Query 031863
Match_columns 151
No_of_seqs 105 out of 323
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5608 LEA14-like dessication 99.9 1.7E-25 3.7E-30 164.4 10.5 122 16-140 27-151 (161)
2 smart00769 WHy Water Stress an 99.9 2.5E-24 5.3E-29 149.8 9.8 99 25-123 1-99 (100)
3 PF03168 LEA_2: Late embryogen 99.7 1.7E-17 3.8E-22 113.6 7.3 97 44-140 1-101 (101)
4 PLN03160 uncharacterized prote 98.5 1.3E-06 2.7E-11 68.9 10.4 106 20-127 65-182 (219)
5 PF11797 DUF3324: Protein of u 95.6 0.2 4.4E-06 36.6 9.6 90 20-124 26-116 (140)
6 PF07705 CARDB: CARDB; InterP 93.4 0.57 1.2E-05 30.9 7.0 72 21-97 1-72 (101)
7 PF11906 DUF3426: Protein of u 91.9 1.2 2.5E-05 32.4 7.4 73 23-95 52-135 (149)
8 PF07092 DUF1356: Protein of u 91.7 0.33 7.2E-06 38.8 4.7 61 38-98 123-183 (238)
9 PRK15285 putative fimbrial cha 79.4 1.9 4.2E-05 34.6 2.9 45 44-93 165-209 (250)
10 PF12751 Vac7: Vacuolar segreg 77.9 3.9 8.4E-05 35.0 4.4 49 23-71 332-380 (387)
11 PRK09525 lacZ beta-D-galactosi 77.6 5.1 0.00011 38.4 5.6 48 43-93 638-687 (1027)
12 PF00927 Transglut_C: Transglu 77.6 2.5 5.4E-05 28.9 2.7 66 30-95 6-75 (107)
13 PRK15253 putative fimbrial ass 77.1 2.6 5.6E-05 33.8 3.0 42 44-93 175-216 (242)
14 PF12505 DUF3712: Protein of u 75.8 3.5 7.6E-05 29.2 3.1 42 23-64 83-125 (125)
15 PF08102 Antimicrobial_7: Scor 75.2 2.3 4.9E-05 24.8 1.6 15 4-18 27-41 (43)
16 PF02753 PapD_C: Pili assembly 73.6 2.4 5.2E-05 26.6 1.6 50 45-99 1-50 (68)
17 PF08626 TRAPPC9-Trs120: Trans 72.4 5.9 0.00013 38.5 4.7 52 40-95 652-704 (1185)
18 PF11739 DctA-YdbH: Dicarboxyl 66.1 44 0.00096 25.6 7.6 79 38-127 12-92 (207)
19 PF12505 DUF3712: Protein of u 64.5 30 0.00064 24.4 5.9 48 99-149 32-80 (125)
20 PRK10340 ebgA cryptic beta-D-g 64.0 18 0.00039 34.7 6.0 50 44-95 613-664 (1021)
21 COG3121 FimC P pilus assembly 61.3 14 0.00031 29.2 4.1 46 43-94 165-210 (235)
22 PF12690 BsuPI: Intracellular 61.1 9.3 0.0002 25.3 2.6 33 41-73 2-40 (82)
23 PHA02516 W baseplate wedge sub 59.0 29 0.00063 23.8 4.9 42 5-47 53-94 (103)
24 PF07233 DUF1425: Protein of u 58.0 17 0.00038 24.5 3.6 53 38-93 23-79 (94)
25 PRK15254 fimbrial chaperone pr 57.8 12 0.00027 29.8 3.2 44 44-93 155-199 (239)
26 PRK15224 pili assembly chapero 54.9 17 0.00037 29.0 3.6 41 44-93 170-210 (237)
27 PF06280 DUF1034: Fn3-like dom 54.0 38 0.00081 23.2 4.9 58 41-98 10-82 (112)
28 PRK15274 putative periplasmic 53.3 14 0.0003 29.9 2.8 43 45-93 168-210 (257)
29 PF10633 NPCBM_assoc: NPCBM-as 53.2 54 0.0012 20.8 5.3 59 38-99 4-63 (78)
30 PF10045 DUF2280: Uncharacteri 52.3 4.2 9.1E-05 28.5 -0.3 29 1-29 1-29 (104)
31 PRK09926 putative chaperone pr 50.3 23 0.00049 28.3 3.6 44 44-93 174-217 (246)
32 PF08531 Bac_rhamnosid_N: Alph 48.9 16 0.00034 27.4 2.4 16 61-76 15-30 (172)
33 PRK15218 fimbrial chaperone pr 48.7 18 0.00039 28.6 2.8 41 44-93 160-200 (226)
34 PRK15211 fimbrial chaperone pr 48.6 27 0.00058 27.7 3.8 46 44-93 159-206 (229)
35 PRK15246 fimbrial assembly cha 47.6 26 0.00057 27.8 3.6 39 45-93 155-193 (233)
36 PRK15195 fimbrial chaperone pr 47.4 26 0.00057 27.6 3.6 40 44-93 164-203 (229)
37 PRK15249 fimbrial chaperone pr 46.7 26 0.00057 28.1 3.5 45 44-94 177-221 (253)
38 PRK15290 lfpB fimbrial chapero 45.6 26 0.00057 28.0 3.3 40 44-93 177-216 (243)
39 PRK11385 putativi pili assembl 45.5 32 0.00069 27.4 3.8 41 44-93 168-208 (236)
40 PRK15208 long polar fimbrial c 43.9 33 0.00071 27.0 3.6 41 44-93 159-199 (228)
41 PF11622 DUF3251: Protein of u 43.9 45 0.00098 25.3 4.1 37 28-66 65-101 (165)
42 PRK15295 fimbrial assembly cha 42.6 35 0.00077 26.8 3.6 41 44-93 158-198 (226)
43 PF10296 DUF2404: Putative int 42.5 84 0.0018 20.8 5.0 46 2-48 15-61 (91)
44 PRK15192 fimbrial chaperone Bc 40.9 36 0.00079 27.1 3.4 40 45-93 164-203 (234)
45 PF13027 DUF3888: Protein of u 40.3 1.1E+02 0.0024 20.4 6.1 52 22-73 25-83 (88)
46 cd09030 DUF1425 Putative perip 39.3 77 0.0017 21.4 4.5 52 39-93 32-87 (101)
47 PRK15188 fimbrial chaperone pr 38.8 44 0.00095 26.5 3.6 38 44-91 165-202 (228)
48 PF11322 DUF3124: Protein of u 38.0 1E+02 0.0022 22.3 5.1 57 37-95 21-78 (125)
49 PF05494 Tol_Tol_Ttg2: Toluene 37.7 1E+02 0.0022 22.6 5.4 50 2-52 61-114 (170)
50 PRK06789 flagellar motor switc 35.7 35 0.00075 22.4 2.2 15 63-77 45-59 (74)
51 PF06030 DUF916: Bacterial pro 35.4 1.6E+02 0.0035 20.8 6.2 21 38-58 26-46 (121)
52 COG4719 Uncharacterized protei 35.4 31 0.00066 26.0 2.0 61 59-120 112-175 (176)
53 PF13757 VIT_2: Vault protein 35.0 1.3E+02 0.0029 19.8 5.1 33 24-56 12-45 (78)
54 PF12371 DUF3651: Protein of u 34.0 28 0.0006 22.3 1.5 24 37-60 50-73 (73)
55 PF12733 Cadherin-like: Cadher 33.4 95 0.0021 19.9 4.1 33 62-95 38-71 (88)
56 PHA00415 25 baseplate wedge su 33.3 1.6E+02 0.0036 21.1 5.6 46 6-52 72-118 (131)
57 PRK15299 fimbrial chaperone pr 32.9 64 0.0014 25.3 3.7 41 44-93 161-201 (227)
58 TIGR02745 ccoG_rdxA_fixG cytoc 32.9 1.6E+02 0.0035 25.6 6.4 63 34-101 341-404 (434)
59 PF03531 SSrecog: Structure-sp 32.6 22 0.00049 28.1 1.0 57 5-63 9-66 (222)
60 PF07977 FabA: FabA-like domai 32.5 1.3E+02 0.0029 21.0 5.1 52 24-75 86-138 (138)
61 PF00354 Pentaxin: Pentaxin fa 31.9 83 0.0018 24.0 4.1 29 60-88 98-126 (195)
62 PF00254 FKBP_C: FKBP-type pep 31.6 38 0.00081 22.1 1.9 15 59-73 12-27 (94)
63 PF12723 DUF3809: Protein of u 31.5 47 0.001 24.2 2.5 22 117-138 35-56 (134)
64 PF06832 BiPBP_C: Penicillin-B 30.5 1.4E+02 0.0031 19.3 4.6 34 61-94 44-77 (89)
65 PF08154 NLE: NLE (NUC135) dom 29.6 67 0.0014 20.1 2.7 35 85-119 15-51 (65)
66 PF05506 DUF756: Domain of unk 29.0 1.1E+02 0.0025 19.9 3.9 45 42-94 21-65 (89)
67 PF02381 MraZ: MraZ protein; 28.0 37 0.00081 21.3 1.3 18 129-146 3-20 (72)
68 PF14343 PrcB_C: PrcB C-termin 27.0 52 0.0011 20.2 1.8 33 29-61 18-50 (60)
69 PRK15233 putative fimbrial cha 26.5 68 0.0015 25.8 2.8 39 44-90 184-222 (246)
70 COG5556 Uncharacterized conser 26.4 33 0.00072 23.8 0.9 30 1-30 1-30 (110)
71 PF11611 DUF4352: Domain of un 26.3 1.3E+02 0.0029 20.2 4.0 36 36-71 33-69 (123)
72 PF07660 STN: Secretin and Ton 25.9 66 0.0014 18.6 2.1 31 94-124 18-48 (52)
73 PF11209 DUF2993: Protein of u 25.5 2.9E+02 0.0064 20.7 10.0 96 6-106 12-111 (225)
74 KOG2411 Aspartyl-tRNA syntheta 25.1 37 0.0008 30.4 1.1 23 54-76 507-529 (628)
75 PF04965 GPW_gp25: Gene 25-lik 25.0 1.1E+02 0.0025 20.1 3.4 41 7-48 48-90 (99)
76 PF14274 DUF4361: Domain of un 24.8 1.7E+02 0.0036 22.0 4.5 71 42-125 78-148 (157)
77 TIGR01750 fabZ beta-hydroxyacy 24.5 2.5E+02 0.0054 19.5 6.0 49 25-76 88-136 (140)
78 PF06674 DUF1176: Protein of u 23.7 2.2E+02 0.0048 23.8 5.5 81 27-118 42-122 (340)
79 PF15516 BpuSI_N: BpuSI N-term 23.5 1.1E+02 0.0024 22.7 3.1 50 4-53 75-125 (159)
80 COG0858 RbfA Ribosome-binding 23.4 58 0.0013 23.1 1.7 24 4-27 68-95 (118)
81 PF05753 TRAP_beta: Translocon 23.2 2.1E+02 0.0045 21.8 4.9 71 20-96 19-97 (181)
82 PF11614 FixG_C: IG-like fold 22.7 71 0.0015 22.0 2.1 61 34-101 26-89 (118)
83 PF14874 PapD-like: Flagellar- 22.5 2.3E+02 0.0051 18.5 5.9 61 28-95 10-72 (102)
84 PF13598 DUF4139: Domain of un 22.1 2.7E+02 0.0059 22.4 5.7 44 43-91 170-213 (317)
85 PF02883 Alpha_adaptinC2: Adap 21.7 2.6E+02 0.0057 18.8 7.3 59 35-96 20-79 (115)
86 PRK09918 putative fimbrial cha 21.4 1.4E+02 0.0031 23.4 3.8 45 44-93 156-200 (230)
87 PF00868 Transglut_N: Transglu 21.2 3E+02 0.0064 19.2 5.9 29 37-67 31-59 (118)
No 1
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=99.93 E-value=1.7e-25 Score=164.36 Aligned_cols=122 Identities=15% Similarity=0.280 Sum_probs=112.8
Q ss_pred hccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecc
Q 031863 16 MANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 16 ~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~ 95 (151)
+.-+++|.++..+.+|+.++..++++..+++|+||||||||++|+.|++|+||.++++|...++.+||+++..++.++++
T Consensus 27 ~i~~~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~ 106 (161)
T COG5608 27 MIPVKKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLR 106 (161)
T ss_pred ceEcCCCCceEEEEEEEEEeccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhh-hhcCCcc--eeeEEEeeeEEeeceeeeeeeecCCcc
Q 031863 96 VPPNILVSLAK-DIGADWD--IDYEVELGLTIDLPIIGNFTIPLSKKG 140 (151)
Q Consensus 96 ~~~~~L~~~~~-~l~~~~~--i~Y~l~g~l~~~~~~~G~~~ip~~~~G 140 (151)
+++..+.++|. ++.++++ ++|++++.+++++- .+.+|+...+
T Consensus 107 ~d~~~~ke~w~~hi~ngErs~Ir~~i~~~v~vg~~---d~eVpi~~~~ 151 (161)
T COG5608 107 LDNSKIKEWWVTHIENGERSTIRVRIKGVVKVGGM---DYEVPIKDNE 151 (161)
T ss_pred EehHHHHHHHHHHhhccCcccEEEEEEEEEEEccE---EEEEEEEEcc
Confidence 99999999998 7777765 99999999988754 3678888766
No 2
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.91 E-value=2.5e-24 Score=149.85 Aligned_cols=99 Identities=32% Similarity=0.498 Sum_probs=95.1
Q ss_pred eeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhhh
Q 031863 25 EITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSL 104 (151)
Q Consensus 25 ~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~~ 104 (151)
++++++|.++++.++++.++++|+|||++|+++++++|++++||+++++|.+.+..+|||+|++.+++|+++++..+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~~~~~~ 80 (100)
T smart00769 1 DVVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEAL 80 (100)
T ss_pred CcceeEeccccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehhHhHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcceeeEEEeeeE
Q 031863 105 AKDIGADWDIDYEVELGLT 123 (151)
Q Consensus 105 ~~~l~~~~~i~Y~l~g~l~ 123 (151)
+.++.++++++|+++|++.
T Consensus 81 ~~~l~~~~~~~y~l~g~l~ 99 (100)
T smart00769 81 IWHIANGEEIPYRLDGKLT 99 (100)
T ss_pred HHhhccCCCccEEEEEEEC
Confidence 9999999999999999975
No 3
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.72 E-value=1.7e-17 Score=113.60 Aligned_cols=97 Identities=26% Similarity=0.419 Sum_probs=85.6
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhhhhhhhc---CCcceeeEEEe
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAKDIG---ADWDIDYEVEL 120 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~~~~~l~---~~~~i~Y~l~g 120 (151)
+++|+|||++++++++++|+++++|.++++|...+.+.+|+++++.+++++++++..+.+.+.++. ...+++|+++|
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~~l~~~~~~~~~~~v~~~~~g 80 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPRLLKDLLAGRVPFDVTYRIRG 80 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHHHHHhhhccccceEEEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999888887665 55799999999
Q ss_pred eeE-EeeceeeeeeeecCCcc
Q 031863 121 GLT-IDLPIIGNFTIPLSKKG 140 (151)
Q Consensus 121 ~l~-~~~~~~G~~~ip~~~~G 140 (151)
++. ++.++.+..++|++.+|
T Consensus 81 ~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 81 TFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEcccceeeeEEEeEEeEC
Confidence 999 57776778889988765
No 4
>PLN03160 uncharacterized protein; Provisional
Probab=98.52 E-value=1.3e-06 Score=68.87 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=77.5
Q ss_pred CCCcceeecccccccccc---------ceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeee
Q 031863 20 EKPEAEITDVDLKNVSRE---------AVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLL 90 (151)
Q Consensus 20 ~~P~V~l~~v~~~~~~~~---------~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v 90 (151)
+.|++++.++++.++++. ..++.++++|+|||..++.-++.+-.++-+|+.++++..+ ...++|+++..+
T Consensus 65 k~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p-~g~~~ar~T~~l 143 (219)
T PLN03160 65 KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP-PGKAKARRTMRM 143 (219)
T ss_pred cCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC-CcccCCCCeEEE
Confidence 899999999999887752 3457777899999999999999999999999999999876 678999998777
Q ss_pred eeecccChhhh---hhhhhhhcCCcceeeEEEeeeEEeec
Q 031863 91 QVPMKVPPNIL---VSLAKDIGADWDIDYEVELGLTIDLP 127 (151)
Q Consensus 91 ~lpv~~~~~~L---~~~~~~l~~~~~i~Y~l~g~l~~~~~ 127 (151)
...+.+....+ ..+..+. ..+.++...+.++...+.
T Consensus 144 ~~tv~~~~~~~~~~~~L~~D~-~~G~v~l~~~~~v~gkVk 182 (219)
T PLN03160 144 NVTVDIIPDKILSVPGLLTDI-SSGLLNMNSYTRIGGKVK 182 (219)
T ss_pred EEEEEEEeceeccchhHHHHh-hCCeEEEEEEEEEEEEEE
Confidence 76655444332 2333342 234555555555544434
No 5
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=95.60 E-value=0.2 Score=36.58 Aligned_cols=90 Identities=10% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCe-EEeeeecCCCCCccCCCeeeeeeecccCh
Q 031863 20 EKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGK-VIASGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 20 ~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~-~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
..|.+++.++.+...+. +-.+.+.|+||.|.=|.=-.+++.|+=.|. ++......+...+.+++.-.+++++.-.
T Consensus 26 ~~p~L~l~~v~~~~~n~---~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~- 101 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQING---RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGK- 101 (140)
T ss_pred cCcccEEeeeeeeEECC---eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCc-
Confidence 68899998888887776 677889999999999998899999987774 5665567778999999998887774221
Q ss_pred hhhhhhhhhhcCCcceeeEEEeeeEE
Q 031863 99 NILVSLAKDIGADWDIDYEVELGLTI 124 (151)
Q Consensus 99 ~~L~~~~~~l~~~~~i~Y~l~g~l~~ 124 (151)
.|..+ .|+++..+.-
T Consensus 102 --------~lk~G---~Y~l~~~~~~ 116 (140)
T PF11797_consen 102 --------KLKPG---KYTLKITAKS 116 (140)
T ss_pred --------CccCC---EEEEEEEEEc
Confidence 33444 7888888764
No 6
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=93.41 E-value=0.57 Score=30.95 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccC
Q 031863 21 KPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVP 97 (151)
Q Consensus 21 ~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~ 97 (151)
+|.+.+........-..+..+.+.+.|.|..... ..++...++++|..+..-.. ..|+++.+.++.+.+...
T Consensus 1 ~pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i---~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 1 KPDLTVSITVSPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI---PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp ---EEE-EEEC-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE---SEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEeeCCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE---CCcCCCcEEEEEEEEEeC
Confidence 4666662222223334578899999999988776 77888999999998833322 588899999888887766
No 7
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=91.85 E-value=1.2 Score=32.43 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=57.4
Q ss_pred cceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEe-eCCeEEeeeecCC----------CCCccCCCeeeee
Q 031863 23 EAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFK-SAGKVIASGTMAD----------PGSLKGNDKTLLQ 91 (151)
Q Consensus 23 ~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-vnG~~v~~G~~~~----------~~~Ipa~g~~~v~ 91 (151)
.+.+.+.++.........+.++..|.|..+++.++-.++-++. .+|+.+++=...- ...++++++..+.
T Consensus 52 ~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~ 131 (149)
T PF11906_consen 52 ALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFR 131 (149)
T ss_pred eEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEE
Confidence 3444445566666678889999999999999999999999999 8998888766622 5578888888887
Q ss_pred eecc
Q 031863 92 VPMK 95 (151)
Q Consensus 92 lpv~ 95 (151)
+.+.
T Consensus 132 ~~~~ 135 (149)
T PF11906_consen 132 LRLE 135 (149)
T ss_pred EEee
Confidence 7654
No 8
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=91.75 E-value=0.33 Score=38.79 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=52.9
Q ss_pred ceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccCh
Q 031863 38 AVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
...+.-.+.|.|||=+++.+.+++-++.-...-++++.......|++.++..+...+....
T Consensus 123 ~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t~i 183 (238)
T PF07092_consen 123 QLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKTTI 183 (238)
T ss_pred EEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeEEe
Confidence 4567778999999999999999999999888999999998889999999887777666555
No 9
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=79.41 E-value=1.9 Score=34.64 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=34.7
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+++..+ .+.++|..+.. .+...|+++++..+.++
T Consensus 165 ~l~i~NPTPyyvtl~~l--~~~~~~~~~~~---~~~~mi~Pfs~~~~~~~ 209 (250)
T PRK15285 165 GYQVSNPTGYYVVLSNA--SNRMDGTPARG---FSPLVIAPKSNVTLGGD 209 (250)
T ss_pred EEEEECCCCcEEEeehe--eeccCCeeccc---CCCceECCCCccEEEcc
Confidence 48999999999999877 44467765421 14567999999999887
No 10
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=77.94 E-value=3.9 Score=34.96 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=38.0
Q ss_pred cceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEE
Q 031863 23 EAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVI 71 (151)
Q Consensus 23 ~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v 71 (151)
.|++..|+=.=++..+.-|.++++=.|||=|++.|+.++.+|+.--.-+
T Consensus 332 ~v~v~~I~NVlaS~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yv 380 (387)
T PF12751_consen 332 DVQVVSIQNVLASEQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYV 380 (387)
T ss_pred cceEEEeeeeeeccceEEEeeEEEEECCCeEEEEeccceeeeEecCCcc
Confidence 4555555555567778888888888999999999999999998654433
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=77.61 E-value=5.1 Score=38.43 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=40.7
Q ss_pred eEEeeeCCCCCccCee--EEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 43 AKVSVDNPYSHSLPIC--EISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 43 ~~l~V~NPN~~~L~i~--~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+++|.|-+.| ..++ .+.|++..||..+.+|.. ...|+|+.+..+++|
T Consensus 638 ~~~~i~N~~~F-~~l~~~~~~w~~~~~G~~~~~g~~--~~~~~p~~~~~i~l~ 687 (1027)
T PRK09525 638 LTIEVTSEYLF-RHSDNELLHWSVALDGKPLASGEV--PLDLAPQGSQRITLP 687 (1027)
T ss_pred cEEEEEEcccC-CcccccEEEEEEEECCEEEEeeeE--ccccCCCCceEEecC
Confidence 47999999998 4544 667888899999999986 358999999999998
No 12
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=77.56 E-value=2.5 Score=28.89 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=39.6
Q ss_pred ccccccccceEEeeEEeeeCCCCCccCeeE---EEEEEeeCCeEEeeee-cCCCCCccCCCeeeeeeecc
Q 031863 30 DLKNVSREAVEYDAKVSVDNPYSHSLPICE---ISYTFKSAGKVIASGT-MADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 30 ~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~---l~y~l~vnG~~v~~G~-~~~~~~Ipa~g~~~v~lpv~ 95 (151)
++.+----+.+|.+.+++.||.+.+|.=-. -...++-+|..-.... .....+|+++++..+++.++
T Consensus 6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 333333467899999999999888743222 2224456777543322 33367899999988888765
No 13
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=77.08 E-value=2.6 Score=33.76 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=33.3
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+++..+. ++|+.+. .+...|+++++..+.++
T Consensus 175 ~l~v~NpTPyyvtl~~l~----~~~~~~~----~~~~mi~Pfs~~~~~~~ 216 (242)
T PRK15253 175 TVIMKNDTANWITVTDVK----AGNTKIN----DQTIMLPPLSTQNINMK 216 (242)
T ss_pred EEEEECCCCcEEEeEeeE----ECCcccC----CCCceECCCCccEEecC
Confidence 489999999999998775 4777542 24568999999988876
No 14
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=75.79 E-value=3.5 Score=29.23 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=33.2
Q ss_pred cceeecccccccc-ccceEEeeEEeeeCCCCCccCeeEEEEEE
Q 031863 23 EAEITDVDLKNVS-REAVEYDAKVSVDNPYSHSLPICEISYTF 64 (151)
Q Consensus 23 ~V~l~~v~~~~~~-~~~~~~~~~l~V~NPN~~~L~i~~l~y~l 64 (151)
.+++.++++..-. ..+..+...+.+.||-++.+.+..+.+++
T Consensus 83 g~~I~~~~v~~~~~~~g~~~~~~~~l~NPS~~ti~lG~v~~~l 125 (125)
T PF12505_consen 83 GFTISDFDVTGGTPADGINLNATVTLPNPSPLTIDLGNVTLNL 125 (125)
T ss_pred CceEeeEEeecCCCCCcEEEEEEEEEcCCCeEEEEeccEEEeC
Confidence 3447778866555 68999999999999999998888887653
No 15
>PF08102 Antimicrobial_7: Scorpion antimicrobial peptide ; InterPro: IPR012526 This family consists of antimicrobial peptides secreted by scorpions. Novel antimicrobial peptides have been isolated from scorpions, namely the opistoporin [] and the pandinin []. These peptides form essentially helical structures and demonstrate high antimicrobial activity against Gram-negative and Gram-positive bacteria respectively.; GO: 0005576 extracellular region
Probab=75.16 E-value=2.3 Score=24.80 Aligned_cols=15 Identities=60% Similarity=0.782 Sum_probs=12.5
Q ss_pred HHHHHhhhHHHHhcc
Q 031863 4 FLDKAKNFVAEKMAN 18 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (151)
-||.+|||++++++.
T Consensus 27 alnAaknfVaeKiGa 41 (43)
T PF08102_consen 27 ALNAAKNFVAEKIGA 41 (43)
T ss_pred HHHHHHHHHHHHhCC
Confidence 478899999999863
No 16
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=73.56 E-value=2.4 Score=26.62 Aligned_cols=50 Identities=14% Similarity=0.331 Sum_probs=31.1
Q ss_pred EeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChh
Q 031863 45 VSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPN 99 (151)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~ 99 (151)
|+|.||-|+=+.+..+..+ -+++ .........|+++++..++++......
T Consensus 1 L~v~NpTPy~vtl~~~~~~--~~~~---~~~~~~~~mi~P~s~~~~~~~~~~~~~ 50 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLN--GGGK---KKKIDNSGMIAPFSSKSFPLPANSSSS 50 (68)
T ss_dssp EEEEE-SSS-EEEEEEEET--HHHC---CEECCCETEE-TTEEEEEETSTTSTT-
T ss_pred CEEECCCCcEEEEEeeeec--cccc---ccccCCceEECCCCceEEeccCCCcCC
Confidence 6899999999999988433 2233 112233338999999999988665543
No 17
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=72.44 E-value=5.9 Score=38.50 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=39.3
Q ss_pred EEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCc-cCCCeeeeeeecc
Q 031863 40 EYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSL-KGNDKTLLQVPMK 95 (151)
Q Consensus 40 ~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~I-pa~g~~~v~lpv~ 95 (151)
...+.+.++||-+|+|.|.+| .+..+|..+.. ....+.| |++....+.+..+
T Consensus 652 ~~~v~VtLqNPf~fel~I~~I--~L~~egv~fes--~~~s~~l~~p~s~~~v~L~g~ 704 (1185)
T PF08626_consen 652 PAEVKVTLQNPFKFELEISSI--SLSTEGVPFES--YPVSIVLLPPNSTQTVRLSGT 704 (1185)
T ss_pred eEEEEEEEECCccceEEEEEE--EEEEcCCcccc--ceeeeEecCCCcceEEEEEEE
Confidence 366788899999999999999 66778877733 3345566 8888888776544
No 18
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=66.14 E-value=44 Score=25.63 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=49.1
Q ss_pred ceEEeeEEeeeCC--CCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhhhhhhhcCCccee
Q 031863 38 AVEYDAKVSVDNP--YSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDID 115 (151)
Q Consensus 38 ~~~~~~~l~V~NP--N~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~~~~~l~~~~~i~ 115 (151)
-..+.+++.++.| .+-++.+++.+.++. +|+ .+-.+..++. .+.. .++++++.-+|.+++..+... .
T Consensus 12 l~n~~~~~~~~~~~~~~~~l~l~~~s~~l~-gG~-----v~~~~~~~~~-~~~~-~~~l~l~~idL~ell~~~~~~---~ 80 (207)
T PF11739_consen 12 LTNIRASFQLEAPNSEAGPLRLSNASAELL-GGR-----VSLEPLRLPL-ADKS-SATLKLENIDLAELLALQGQK---G 80 (207)
T ss_pred eeeeEEEEEEecCCccCCcEEEEEeEEEcc-CCE-----EEccceecCc-ccCe-EEEEEEcCCCHHHHHhhcCcc---c
Confidence 3444555555554 467888888888866 666 3445677777 4444 777788887777777654332 2
Q ss_pred eEEEeeeEEeec
Q 031863 116 YEVELGLTIDLP 127 (151)
Q Consensus 116 Y~l~g~l~~~~~ 127 (151)
...+|.+.-.+|
T Consensus 81 ~~~tG~lsG~lP 92 (207)
T PF11739_consen 81 ISATGRLSGRLP 92 (207)
T ss_pred eEEEEEEEEEEe
Confidence 355666654444
No 19
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=64.52 E-value=30 Score=24.38 Aligned_cols=48 Identities=6% Similarity=0.145 Sum_probs=30.9
Q ss_pred hhhhhhhhhhcCCcceeeEEEeeeEEeeceeeeeeee-cCCcceeecCCccC
Q 031863 99 NILVSLAKDIGADWDIDYEVELGLTIDLPIIGNFTIP-LSKKGEFKLPSLSD 149 (151)
Q Consensus 99 ~~L~~~~~~l~~~~~i~Y~l~g~l~~~~~~~G~~~ip-~~~~G~i~lp~~p~ 149 (151)
..+.++...+-.++++.++++|+-. +. +|.+++. ++.++.++++.+..
T Consensus 32 ~~f~~f~~~~~~~~~~~l~l~g~~~--~~-~g~l~~~~i~~~k~i~l~Gln~ 80 (125)
T PF12505_consen 32 DAFTQFVTALLFNEEVTLTLRGKTD--TH-LGGLPFSGIPFDKTITLKGLNG 80 (125)
T ss_pred HHHHHHHHHHHhCCcEEEEEEEeee--EE-EccEEEEEEeecceeeccccCC
Confidence 4456666777777789999999853 33 3444443 44455788876543
No 20
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=64.00 E-value=18 Score=34.73 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=40.9
Q ss_pred EEeeeCCCCCccCee--EEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecc
Q 031863 44 KVSVDNPYSHSLPIC--EISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~--~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~ 95 (151)
.++|.|-+.| .+++ .+.|++..||+.+.+|... ...|+++++..++||+.
T Consensus 613 ~~~i~N~~~F-~~l~~~~~~w~l~~dG~~~~~g~~~-~~~i~p~~~~~v~l~~~ 664 (1021)
T PRK10340 613 ELKVENKLWF-TNLDDYTLHAEVRAEGETLASGQIK-LRDVAPNSEAPLQITLP 664 (1021)
T ss_pred EEEEEECccC-CCccccEEEEEEEECCEEEEEeeec-cCccCCCCceEEEecCC
Confidence 7999999987 3444 5677788899999999854 56899999999999864
No 21
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.28 E-value=14 Score=29.22 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=35.8
Q ss_pred eEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 43 AKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 43 ~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
-.++|.||-++=+.+.+++... +|.++. ....-|++.++..+.++-
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~--~~~~~~----~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV--GGRKLG----LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee--CceecC----CCcceECCCccceeecCC
Confidence 5789999999999999885554 888776 346677788887777774
No 22
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=61.08 E-value=9.3 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.2
Q ss_pred EeeEEeeeCCCCCccCee---EEEEEEee---CCeEEee
Q 031863 41 YDAKVSVDNPYSHSLPIC---EISYTFKS---AGKVIAS 73 (151)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~---~l~y~l~v---nG~~v~~ 73 (151)
+.+.+.|.|+.+.++++. |..||+.+ +|..+-.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwr 40 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWR 40 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEE
Confidence 678999999999999987 77778775 4554444
No 23
>PHA02516 W baseplate wedge subunit; Provisional
Probab=58.98 E-value=29 Score=23.81 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=30.3
Q ss_pred HHHHhhhHHHHhccCCCCcceeeccccccccccceEEeeEEee
Q 031863 5 LDKAKNFVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSV 47 (151)
Q Consensus 5 ~~~~~~~~~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V 47 (151)
...++.-|.+.+..+| |++++.++++.........+.++..+
T Consensus 53 ~~~i~~~i~~aI~~~E-PRi~~~~V~v~~~~~g~l~i~i~~~~ 94 (103)
T PHA02516 53 RLQIYAACAMALMRWE-PRITLTRVQIERAADGRMTVDITGWH 94 (103)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEEEEECCCCeEEEEEEEEE
Confidence 3456667788888888 99999999997766445555555554
No 24
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=57.96 E-value=17 Score=24.50 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred ceEEeeEEeeeCCCCCccCeeEEEEEEe---eCCeEEeee-ecCCCCCccCCCeeeeeee
Q 031863 38 AVEYDAKVSVDNPYSHSLPICEISYTFK---SAGKVIASG-TMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~~l~y~l~---vnG~~v~~G-~~~~~~~Ipa~g~~~v~lp 93 (151)
.-.+.+.+.+.|-.+.++. +.|.++ -+|..+... ..-+.+.|+++++.++...
T Consensus 23 ~g~~~~~~~l~N~~~~~~~---l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ 79 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLT---LQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAV 79 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EE---EEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE
T ss_pred CCeEEEEEEEEECCCCcEE---EEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEE
Confidence 5667888888888888876 678877 688888765 4555778888877776654
No 25
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=57.83 E-value=12 Score=29.79 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=32.5
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCe-EEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGK-VIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~-~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.++|.||-|+=+++..+. ++|. .+. + ..+...|+++++..+.++
T Consensus 155 ~l~v~NpTPYyitl~~l~----~~~~~~~~-~-~~~~~mi~Pfs~~~~~~~ 199 (239)
T PRK15254 155 HLTLRNPTPYYITVAWLG----ADRSHRLS-G-FREGVMVPPLGSLPLKAV 199 (239)
T ss_pred EEEEECCCceEEEeeeEE----ecCccccc-c-cCCCceECCCCceEEecc
Confidence 489999999999998765 4664 332 1 224568999999988864
No 26
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=54.93 E-value=17 Score=29.01 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=32.2
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.++|.||-|+=+++.++. ++|+.+ +....|+++++..+.++
T Consensus 170 ~l~v~NpTPYyvtl~~l~----~~~~~~-----~~~~miaPfs~~~~~~~ 210 (237)
T PRK15224 170 KLKVENPTPFYMNLASVT----VGGKPI-----TGLEYIPPFADKTLNMP 210 (237)
T ss_pred EEEEECCCCcEEEeEeEE----ECCccc-----CCceeECCCCccEEEcC
Confidence 389999999999998764 588865 11346999999988876
No 27
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=54.04 E-value=38 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=29.9
Q ss_pred EeeEEeeeCCCCCccCe--eEE-EEEEe---eCCeEE---------eeeecCCCCCccCCCeeeeeeecccCh
Q 031863 41 YDAKVSVDNPYSHSLPI--CEI-SYTFK---SAGKVI---------ASGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 41 ~~~~l~V~NPN~~~L~i--~~l-~y~l~---vnG~~v---------~~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
...+++|+|..+-++.. +.. -+.-. -+|... ......+.++|||+++..+++.+++.-
T Consensus 10 ~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 10 FSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred eEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 66667777777655442 222 11111 123322 344566789999999999999988744
No 28
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=53.33 E-value=14 Score=29.93 Aligned_cols=43 Identities=21% Similarity=0.111 Sum_probs=31.0
Q ss_pred EeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 45 VSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
+.|.||-|+=+++..+.. +|..... ..+...|+++++..+.++
T Consensus 168 l~v~NpTPYyvtl~~i~~----~~~~~~~--~~~~~mi~Pfs~~~~~l~ 210 (257)
T PRK15274 168 VIFDNPTPFYLVISNAGS----KENETAS--GFKNLLIAPREKVTSPIK 210 (257)
T ss_pred EEEECCCCcEEEeeeeEe----ccCcccc--cCCCceECCCCccEEecc
Confidence 899999999999997653 3331110 114568999999999887
No 29
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=53.23 E-value=54 Score=20.82 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=31.4
Q ss_pred ceEEeeEEeeeCCCCCccCeeEEEEEEee-CCeEEeeeecCCCCCccCCCeeeeeeecccChh
Q 031863 38 AVEYDAKVSVDNPYSHSLPICEISYTFKS-AGKVIASGTMADPGSLKGNDKTLLQVPMKVPPN 99 (151)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~~l~y~l~v-nG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~ 99 (151)
+....+++.|.|...-++ .++..++.+ +|=.+..+ ......|+++.+..+.+.+++.-+
T Consensus 4 G~~~~~~~tv~N~g~~~~--~~v~~~l~~P~GW~~~~~-~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPL--TNVSLSLSLPEGWTVSAS-PASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-B--SS-EEEEE--TTSE---E-EEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCce--eeEEEEEeCCCCccccCC-ccccccCCCCCEEEEEEEEECCCC
Confidence 456788999999886665 445444443 45442222 122238999999999988887643
No 30
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.28 E-value=4.2 Score=28.47 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=24.2
Q ss_pred ChhHHHHHhhhHHHHhccCCCCcceeecc
Q 031863 1 MAQFLDKAKNFVAEKMANIEKPEAEITDV 29 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~P~V~l~~v 29 (151)
||..-+.+|-||-|.++-|.+|+--+..+
T Consensus 1 MA~L~~~vK~FIVQ~LAcfdTPs~v~~aV 29 (104)
T PF10045_consen 1 MAALKKEVKAFIVQSLACFDTPSEVAEAV 29 (104)
T ss_pred CCCccHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 77778899999999999999997655433
No 31
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=50.35 E-value=23 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=33.5
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.|+|.||-|+=+.+..+... .+|+.+.. +..-|+++++..+.++
T Consensus 174 ~L~v~Nptpy~itl~~l~~~--~~g~~~~~----~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 174 SLRVTNPTPYYVSFSSGDLE--AGGKRYPV----DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEECCCceEEEEEeeeee--cCCeeccc----CcceECCCCcceEecC
Confidence 39999999999999987554 46775432 2357999999988876
No 32
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=48.93 E-value=16 Score=27.36 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=13.2
Q ss_pred EEEEeeCCeEEeeeec
Q 031863 61 SYTFKSAGKVIASGTM 76 (151)
Q Consensus 61 ~y~l~vnG~~v~~G~~ 76 (151)
.|+++|||++++.|..
T Consensus 15 ~Y~l~vNG~~V~~~~l 30 (172)
T PF08531_consen 15 RYELYVNGERVGDGPL 30 (172)
T ss_dssp EEEEEETTEEEEEE--
T ss_pred eEEEEECCEEeeCCcc
Confidence 6999999999999873
No 33
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=48.75 E-value=18 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=31.4
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.++|.||-|+=+++..+. +++. + ..+...|+++++..+.++
T Consensus 160 ~l~v~NpTPyyitl~~l~----~~~~-~----~~~~~mi~Pfs~~~~~~~ 200 (226)
T PRK15218 160 SISVKNNSANWITIPEIK----AKSK-V----NKETLLLAPWSSQSITTT 200 (226)
T ss_pred EEEEECCCCcEEEeEeee----cCCc-c----cCCcceECCCCccEEEcc
Confidence 499999999999999885 3443 2 114567999999999876
No 34
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=48.59 E-value=27 Score=27.68 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=33.1
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeec--CCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTM--ADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~--~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+++..+. ++|..+..... .....|+++++..+.++
T Consensus 159 ~l~v~NpTPyyitl~~l~----v~~~~~~~~~~~~~~~~mi~Pfs~~~~~~~ 206 (229)
T PRK15211 159 ETYLKNPTPYYFAVTGVK----LNGQPVKLSDRVMNEIAQLAPFSEVSLGKL 206 (229)
T ss_pred EEEEECCCCcEEEeEeEE----ECCeeccccccccccceeECCCCcceEecC
Confidence 389999999999998775 58887632111 12346999999888765
No 35
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=47.58 E-value=26 Score=27.78 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=31.2
Q ss_pred EeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 45 VSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
+.|.||-|+=+++..+.. +|..+ +...|+++++..+.++
T Consensus 155 l~v~NpTPyyvtl~~l~~----~~~~~------~~~mi~P~s~~~~~~~ 193 (233)
T PRK15246 155 IRIVNPTSWYMSLTLTMD----NKKSI------GDIMVAPKTALDVPLT 193 (233)
T ss_pred EEEECCCCcEEEEEeEEE----CCccc------CcceECCCCccEEEcC
Confidence 899999999999986653 66644 2467999999999876
No 36
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=47.42 E-value=26 Score=27.64 Aligned_cols=40 Identities=10% Similarity=0.275 Sum_probs=31.8
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+.+..+.. +|..+ +...|+++++..+.++
T Consensus 164 ~L~v~NptPy~vtl~~l~v----~~~~i------~~~mv~P~s~~~~~l~ 203 (229)
T PRK15195 164 HLKVHNPSPYYVTLVNLQV----GSQKL------GNAMIAPKVNSQIPLP 203 (229)
T ss_pred EEEEECCCceEEEEEEEEE----CCccc------CceEECCCCceEEEcC
Confidence 4999999999999987754 67654 1237999999999887
No 37
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=46.74 E-value=26 Score=28.05 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=33.9
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.++|.||-|+=+.+..+... ++|+.+.. ....|+++++..+.++.
T Consensus 177 ~l~v~Nptpyyitl~~l~~~--~~~~~~~~----~~~mv~P~s~~~~~l~~ 221 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVK--VNGASYNL----DADMIAPFSSQTWWLPG 221 (253)
T ss_pred EEEEECCCceEEEeeeeeec--cCCeecCC----CCceECCCCccEEEccC
Confidence 39999999999999988543 46654321 34569999999998873
No 38
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=45.57 E-value=26 Score=28.00 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=32.1
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+.+..+. ++|..+ +...|+++++..+.++
T Consensus 177 ~l~v~NptPyyvtl~~l~----v~g~~~------~~~mI~P~s~~~~~~~ 216 (243)
T PRK15290 177 NLIAENPNPIHISVMDVI----VDGHDV------PLNMIRPFETLTLPLP 216 (243)
T ss_pred EEEEECCCcEEEEEEEEe----ecCccc------CCceECCCCceEEEcC
Confidence 499999999999998774 577754 2357999999988876
No 39
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=45.53 E-value=32 Score=27.37 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=31.6
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+++..+. ++|+.+. ....|+++++..+.++
T Consensus 168 ~l~v~NpTPyyvtl~~l~----~~~~~~~-----~~~mi~Pfs~~~~~~~ 208 (236)
T PRK11385 168 GVQLTNPTPYYINLIQVS----VNGKALS-----NAGVVPPKSQRQTSWC 208 (236)
T ss_pred EEEEECCCCcEEEEEeEE----ECCcccC-----CCceECCCCccEEecc
Confidence 388999999999998764 4777541 2346999999998875
No 40
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=43.92 E-value=33 Score=27.01 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=32.3
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+.+..+.. +|+.+. ...-|+++++..+.++
T Consensus 159 ~l~v~Nptpy~vtl~~l~~----~g~~~~-----~~~mi~P~s~~~~~l~ 199 (228)
T PRK15208 159 QIKVENPSAFNLTFNQFYA----NGRDIE-----KAGMVPAKGSLNIELP 199 (228)
T ss_pred EEEEECCCccEEEEEEEEE----CCcccC-----CCceECCCCccEEEcc
Confidence 4899999999999998753 677442 2457999999988876
No 41
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=43.90 E-value=45 Score=25.28 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=22.2
Q ss_pred ccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEee
Q 031863 28 DVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKS 66 (151)
Q Consensus 28 ~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~v 66 (151)
.+++..+.-+.---.+.|+|.|++..+|| ++.+.++-
T Consensus 65 ~~~l~~I~~~AnGs~a~L~i~~~~~~pLp--af~~~veW 101 (165)
T PF11622_consen 65 RLSLSNIEPEANGSRATLRIQNLSSAPLP--AFSATVEW 101 (165)
T ss_dssp EEEEEEEEE-SSSEEEEEEEEESSSS------EEEEEEE
T ss_pred EEEEecccccCCccEEEEEEeCCCCCccc--CceeEEEE
Confidence 34455555555556788999999988877 77777763
No 42
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=42.64 E-value=35 Score=26.84 Aligned_cols=41 Identities=7% Similarity=0.181 Sum_probs=31.8
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.++|.||-|+=+.+..+. ++|..+ .....|+++++..+.++
T Consensus 158 ~l~v~NptPyyitl~~l~----~~~~~~-----~~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 158 VITVNNPTPYYMNFASVT----LNSHEV-----KSATFVPPKSSASFKLG 198 (226)
T ss_pred EEEEECCCceEEEEEEEE----ECCccc-----CCCceECCCCccEEEcc
Confidence 389999999999999875 367654 12356999999988876
No 43
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=42.49 E-value=84 Score=20.80 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=32.0
Q ss_pred hhHHHHHhhhHHHHhccCCCCcceeecccccccccc-ceEEeeEEeee
Q 031863 2 AQFLDKAKNFVAEKMANIEKPEAEITDVDLKNVSRE-AVEYDAKVSVD 48 (151)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~P~V~l~~v~~~~~~~~-~~~~~~~l~V~ 48 (151)
+.|.+.++..+..++..+..|.+= .++++.++++- ..-..-..++.
T Consensus 15 ~~~~~~i~~~L~~kL~~i~~P~fl-~~i~v~~~~lG~~~P~i~~~~~~ 61 (91)
T PF10296_consen 15 EAFRDKIKEKLQKKLNKIKLPSFL-DEISVTELDLGDSPPIISNVRIP 61 (91)
T ss_pred HHHHHHHHHHHHHHHccccCCCcc-CcEEEEEEECCCCCCEEEecccc
Confidence 357788999999999999999775 67777776663 33333444443
No 44
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=40.86 E-value=36 Score=27.05 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=31.5
Q ss_pred EeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 45 VSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
+.|.||-|+=+++..+. ++|+.+ .....|+++++..+.++
T Consensus 164 l~v~NpTPyyvtl~~l~----v~~~~~-----~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 164 ATVRNPTPYYVTLFLLR----ANERAQ-----DNAGVVAPFATRQTDWC 203 (234)
T ss_pred EEEECCCCcEEEEEeEE----EcCccc-----CCCceECCCCccEEecc
Confidence 99999999999998764 477643 23457999999988875
No 45
>PF13027 DUF3888: Protein of unknown function (DUF3888)
Probab=40.28 E-value=1.1e+02 Score=20.44 Aligned_cols=52 Identities=12% Similarity=0.252 Sum_probs=34.9
Q ss_pred Ccceeeccccccccc----cceEEeeEEeeeC---CCCCccCeeEEEEEEeeCCeEEee
Q 031863 22 PEAEITDVDLKNVSR----EAVEYDAKVSVDN---PYSHSLPICEISYTFKSAGKVIAS 73 (151)
Q Consensus 22 P~V~l~~v~~~~~~~----~~~~~~~~l~V~N---PN~~~L~i~~l~y~l~vnG~~v~~ 73 (151)
|.++...+++.++.- .+-.|.++++|.. |-.-|...+.|.|++.-+|.++..
T Consensus 25 ~~~~~~~~~Il~i~r~~~~~~~~f~vti~v~~~~g~h~pp~g~d~ITf~i~~~~vkv~~ 83 (88)
T PF13027_consen 25 PQYSPYCVKILEIKRVNGFRGFNFEVTIEVTTYEGAHNPPYGKDTITFEIDPNGVKVIK 83 (88)
T ss_pred cccCcccceEEEEEEecCCCcEEEEEEEEEEeccCCcCCCcccEEEEEEeCCCcEEEEE
Confidence 555555555555444 3445999999984 555577788898888877766654
No 46
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=39.30 E-value=77 Score=21.37 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=40.2
Q ss_pred eEEeeEEeeeCCCCCccCeeEEEEEEe---eCCeEEeee-ecCCCCCccCCCeeeeeee
Q 031863 39 VEYDAKVSVDNPYSHSLPICEISYTFK---SAGKVIASG-TMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~---vnG~~v~~G-~~~~~~~Ipa~g~~~v~lp 93 (151)
-.+.+.+.+.|-.+.++. +.|.++ -+|..+... ..-+.+.|+++++.++.-.
T Consensus 32 g~~~~~~~l~N~~~~~~~---l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ 87 (101)
T cd09030 32 GLLEAQATLSNTSSKPLT---LQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAV 87 (101)
T ss_pred CeEEEEEEEEeCCCCCEE---EEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEE
Confidence 567888899999888876 467776 788888887 7777788888887776543
No 47
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=38.78 E-value=44 Score=26.49 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=29.3
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQ 91 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~ 91 (151)
.+.|.||-|+=+++..+. ++|..+ +...|+++++..++
T Consensus 165 ~l~v~NpTPyyvtl~~l~----v~~~~~------~~~mi~P~s~~~~~ 202 (228)
T PRK15188 165 QLTITNPSPYYVSMVELY----SAGKKL------PNTMVPPKGAITLP 202 (228)
T ss_pred EEEEECCCCcEEEEEEEE----ECCccc------CCceECCCCcceee
Confidence 489999999999998664 577765 23579999997654
No 48
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=38.03 E-value=1e+02 Score=22.28 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=44.7
Q ss_pred cceEEeeEEeeeCCCC-CccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecc
Q 031863 37 EAVEYDAKVSVDNPYS-HSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 37 ~~~~~~~~l~V~NPN~-~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~ 95 (151)
....|.++|.|+|-.+ -+|.|..++|= .-+|+.+- -..++++.+++.++..+-|+-.
T Consensus 21 ~~~~Lt~tLSiRNtd~~~~i~i~~v~Yy-dt~G~lvr-~yl~~Pi~L~Pl~t~~~vV~e~ 78 (125)
T PF11322_consen 21 RPFNLTATLSIRNTDPTDPIYITSVDYY-DTDGKLVR-SYLDKPIYLKPLATTEFVVEES 78 (125)
T ss_pred ceEeEEEEEEEEcCCCCCCEEEEEEEEE-CCCCeEhH-HhcCCCeEcCCCceEEEEEecc
Confidence 4566889999999875 58999999884 44555444 4688999999999999988843
No 49
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=37.73 E-value=1e+02 Score=22.60 Aligned_cols=50 Identities=6% Similarity=0.104 Sum_probs=24.3
Q ss_pred hhHHHHHhhhHHH----HhccCCCCcceeeccccccccccceEEeeEEeeeCCCC
Q 031863 2 AQFLDKAKNFVAE----KMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYS 52 (151)
Q Consensus 2 ~~~~~~~~~~~~~----~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~ 52 (151)
++|.+..+.++.. .+..+...++++.+....+-. .+....+..+|..++.
T Consensus 61 ~~F~~~f~~~l~~~Y~~~l~~y~~~~v~~~~~~~~~~~-~~~~~~V~t~i~~~~g 114 (170)
T PF05494_consen 61 QRFVEAFKQLLVRTYAKRLDEYSGQSVEVLSEPPNGRK-GGNRAIVRTEIISKDG 114 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-SS-EEEE------S-T-T-SEEEEEEEEEET-T
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCC-CCCEEEEEEEEEcCCC
Confidence 3677777777774 445567767777655554431 3445566666666654
No 50
>PRK06789 flagellar motor switch protein; Validated
Probab=35.68 E-value=35 Score=22.39 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred EEeeCCeEEeeeecC
Q 031863 63 TFKSAGKVIASGTMA 77 (151)
Q Consensus 63 ~l~vnG~~v~~G~~~ 77 (151)
++++||+.+|+|+.-
T Consensus 45 dI~vNg~lia~GEvV 59 (74)
T PRK06789 45 RLMLENEEIGTGKIL 59 (74)
T ss_pred EEEECCEEEeEEeEE
Confidence 789999999999753
No 51
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=35.41 E-value=1.6e+02 Score=20.78 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=13.9
Q ss_pred ceEEeeEEeeeCCCCCccCee
Q 031863 38 AVEYDAKVSVDNPYSHSLPIC 58 (151)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~ 58 (151)
++.-.+.++|.|.-+-++.++
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~ 46 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVK 46 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEE
Confidence 456667788888766665554
No 52
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.39 E-value=31 Score=25.98 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=42.2
Q ss_pred EEEEEEeeCCeEEeeeecCCCCCccCCCe-eeeeeecccChhhhhhhhhhhcCCc--ceeeEEEe
Q 031863 59 EISYTFKSAGKVIASGTMADPGSLKGNDK-TLLQVPMKVPPNILVSLAKDIGADW--DIDYEVEL 120 (151)
Q Consensus 59 ~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~-~~v~lpv~~~~~~L~~~~~~l~~~~--~i~Y~l~g 120 (151)
+-.++++++|-+=.+|.-...++++.+|+ +..+.|.+ .|.+++..+..+..+. ..+|+++.
T Consensus 112 ka~~~~sIDgG~sf~~nPt~kvt~~e~Gk~~~~~apAs-~YtniRw~lp~laa~~Tv~~tyrvqV 175 (176)
T COG4719 112 KAAFEVSIDGGESFQGNPTYKVTTLEDGKKSRVEAPAS-DYTNIRWRLPALAAGATVVTTYRVQV 175 (176)
T ss_pred hhcEEEEecCCcccccCCcEEEEecCCCeEEEeecCcc-ccceeEEeccccCCCcEEEEEEEEEe
Confidence 34567778876666777777888886666 56678877 8888877777665554 44566553
No 53
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=34.98 E-value=1.3e+02 Score=19.78 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=25.8
Q ss_pred ceeecccccc-ccccceEEeeEEeeeCCCCCccC
Q 031863 24 AEITDVDLKN-VSREAVEYDAKVSVDNPYSHSLP 56 (151)
Q Consensus 24 V~l~~v~~~~-~~~~~~~~~~~l~V~NPN~~~L~ 56 (151)
+-+++.++.. +.+..+.+.+++.-+||++.++.
T Consensus 12 LpL~~~~v~a~v~G~~~~~ta~lty~N~~~~plE 45 (78)
T PF13757_consen 12 LPLQSSRVTACVNGYSAGTTASLTYENPEDRPLE 45 (78)
T ss_pred ceEEEeEEEEEEEcccccEEEEEEEECCCCCcEE
Confidence 5556666655 77788899999999999998764
No 54
>PF12371 DUF3651: Protein of unknown function (DUF3651); InterPro: IPR022113 This domain family is found in eukaryotes, and is approximately 70 amino acids in length. This family is frequently annotated as a membrane protein but there is little associated literature to back this up.
Probab=34.02 E-value=28 Score=22.27 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=19.6
Q ss_pred cceEEeeEEeeeCCCCCccCeeEE
Q 031863 37 EAVEYDAKVSVDNPYSHSLPICEI 60 (151)
Q Consensus 37 ~~~~~~~~l~V~NPN~~~L~i~~l 60 (151)
...++.-.+.+.||++.++.++.+
T Consensus 50 ~~~t~~~~i~~~Np~~~~l~v~ei 73 (73)
T PF12371_consen 50 LNTTFSPLISLFNPHSQPLQVDEI 73 (73)
T ss_pred cCccccccEEEECCCCcceEeeeC
Confidence 456777889999999999988753
No 55
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=33.41 E-value=95 Score=19.93 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=21.5
Q ss_pred EEEeeCCeEEeeeecCCCCCccCCCeee-eeeecc
Q 031863 62 YTFKSAGKVIASGTMADPGSLKGNDKTL-LQVPMK 95 (151)
Q Consensus 62 y~l~vnG~~v~~G~~~~~~~Ipa~g~~~-v~lpv~ 95 (151)
+.+.+||.....|.....+.+.. |... +++.++
T Consensus 38 a~v~vng~~~~~~~~~~~i~L~~-G~n~~i~i~Vt 71 (88)
T PF12733_consen 38 ATVTVNGVPVNSGGYSATIPLNE-GENTVITITVT 71 (88)
T ss_pred EEEEEcCEEccCCCcceeeEccC-CCceEEEEEEE
Confidence 67889998888764445666654 4443 666654
No 56
>PHA00415 25 baseplate wedge subunit
Probab=33.31 E-value=1.6e+02 Score=21.15 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHhhhHHHHhccCCCCcceeecccccccc-ccceEEeeEEeeeCCCC
Q 031863 6 DKAKNFVAEKMANIEKPEAEITDVDLKNVS-REAVEYDAKVSVDNPYS 52 (151)
Q Consensus 6 ~~~~~~~~~~~~~~~~P~V~l~~v~~~~~~-~~~~~~~~~l~V~NPN~ 52 (151)
..++.-|.+.+..| +|++++.++++..-. .....+.+..+|..-|+
T Consensus 72 ~~i~~~I~~AI~~~-EPRI~~~~V~v~~~~~~~~l~i~l~y~i~~tn~ 118 (131)
T PHA00415 72 DTIERNIESAIRNY-EPRVYNLNVEVIPVYDDNSIIVTIYFSIIDNPD 118 (131)
T ss_pred HHHHHHHHHHHHHh-CcCeeeEEEEEEecCCCCEEEEEEEEEEcCCCC
Confidence 34555666777777 899999999887643 23477777778877774
No 57
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=32.91 E-value=64 Score=25.29 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=31.3
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+.+..+.. +|..+. ...-|+++++..+.++
T Consensus 161 ~l~v~Nptpy~vtl~~l~~----~~~~~~-----~~~mv~P~s~~~~~l~ 201 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLSV----GSQKVK-----APRYVAPFGNAQYTLP 201 (227)
T ss_pred EEEEECCCccEEEEEeEEE----CCcccC-----CCceECCCCccEEEcC
Confidence 4999999999999987753 566431 2346999999888876
No 58
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=32.89 E-value=1.6e+02 Score=25.62 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=43.2
Q ss_pred ccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecC-CCCCccCCCeeeeeeecccChhhh
Q 031863 34 VSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMA-DPGSLKGNDKTLLQVPMKVPPNIL 101 (151)
Q Consensus 34 ~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~-~~~~Ipa~g~~~v~lpv~~~~~~L 101 (151)
.+....+=.-+++|.|-...+ .+|++.++|.+=++-... +.++++|.+..++++-++++...+
T Consensus 341 ~~~g~i~N~Y~~~i~Nk~~~~-----~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~ 404 (434)
T TIGR02745 341 NSDGVVENTYTLKILNKTEQP-----HEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDAL 404 (434)
T ss_pred CCCCcEEEEEEEEEEECCCCC-----EEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhc
Confidence 355567778889999976554 456777766432222233 378999999999999988885544
No 59
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin. An 81kDa protein is predicted, containing several highly-charged domains and a stretch of 75 residues that share 47% identity with a portion of the high mobility group (HMG) protein HMG1. This HMG box probably constitutes the structure recognition element for cisplatin-modified DNA, the probable recognition motif being the local duplex unwinding and bending that occurs on formation of intra-strand cross-links []. SSRP1 is the human homologue of a recently identified mouse protein that binds to recombination signal sequences []. These sequences have been postulated to form stem-loop structures, further implicating local bends and unwinding in DNA as a recognition target for HMG-box proteins. A Drosophila melanogaster cDNA encoding an HMG-box-containing protein has also been isolated [, ]. This protein shares 50% sequence identity with human SSRP1. In vitro binding studies using Drosophila SSRP showed that the protein binds to single-stranded DNA and RNA, with highest affinity for nucleotides G and U. Comparison of the predicted amino acid sequences among SSRP family members reveals 48% identity, with structural conservation in the C terminus of the HMG box, as well as domains of highly charged residues. The most highly conserved regions lie in the poorly understood N terminus, suggesting that this portion of the protein is critical for its function []. This entry contains Pob3 Q04636 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p (IPR013953 from INTERPRO)-Pob3p) []. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 3F5R_A 2GCL_B 2GCJ_D.
Probab=32.57 E-value=22 Score=28.13 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=16.2
Q ss_pred HHHHhhhHHHHhc-cCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEE
Q 031863 5 LDKAKNFVAEKMA-NIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYT 63 (151)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~ 63 (151)
.+++++|+.+.+. +++.=++++.+-.|+.+...+..+.. .|.|.-.|.||++.++=.
T Consensus 9 ~~~L~~~~k~~y~i~le~~els~kGwNWG~~~~~g~~L~F--~v~~K~aFEIPl~~Vsn~ 66 (222)
T PF03531_consen 9 FEKLKKFFKKNYDIELEEKELSVKGWNWGKADFEGSELVF--NVDNKPAFEIPLSDVSNC 66 (222)
T ss_dssp HHHHHHHHHHHH----EE-SSTTTT-----------------------------------
T ss_pred HHHHHHHHHHHcCCCCcccceecCCEeeceeEEcCCEEEE--EECCeEEEEeeHHHhhhc
Confidence 4678888877554 45888999999999999999877665 689999999999988643
No 60
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=32.48 E-value=1.3e+02 Score=21.04 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred ceeeccccccccccce-EEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeee
Q 031863 24 AEITDVDLKNVSREAV-EYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGT 75 (151)
Q Consensus 24 V~l~~v~~~~~~~~~~-~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~ 75 (151)
..+.++++.+.=.-+. ++.+++++..-....-..-..+.+++++|..+++++
T Consensus 86 ~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~vdg~~v~~~~ 138 (138)
T PF07977_consen 86 AGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYVDGELVAEAE 138 (138)
T ss_dssp EEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred ccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEECCEEEEEEC
Confidence 3566777766555566 888888887644455567778899999999999863
No 61
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=31.89 E-value=83 Score=24.03 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=20.0
Q ss_pred EEEEEeeCCeEEeeeecCCCCCccCCCee
Q 031863 60 ISYTFKSAGKVIASGTMADPGSLKGNDKT 88 (151)
Q Consensus 60 l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~ 88 (151)
=.+++|+||...........-.|++.|.-
T Consensus 98 G~~~ly~dG~~~~~~~~~~g~~i~~gG~~ 126 (195)
T PF00354_consen 98 GRWQLYVDGVRLSSTGLATGHSIPGGGTL 126 (195)
T ss_dssp TEEEEEETTEEEEEEESSTT--B-SSEEE
T ss_pred cEEEEEECCEecccccccCCceECCCCEE
Confidence 36788999998777777777888887763
No 62
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=31.57 E-value=38 Score=22.05 Aligned_cols=15 Identities=47% Similarity=0.561 Sum_probs=7.0
Q ss_pred EEEEEEee-CCeEEee
Q 031863 59 EISYTFKS-AGKVIAS 73 (151)
Q Consensus 59 ~l~y~l~v-nG~~v~~ 73 (151)
.++|..+. +|..+.+
T Consensus 12 ~i~y~~~~~~g~~~~~ 27 (94)
T PF00254_consen 12 TIHYTGRLEDGKVFDS 27 (94)
T ss_dssp EEEEEEEETTSEEEEE
T ss_pred EEEEEEEECCCcEEEE
Confidence 45555554 4444333
No 63
>PF12723 DUF3809: Protein of unknown function (DUF3809); InterPro: IPR024219 This family of proteins has no known function. ; PDB: 3NQN_B.
Probab=31.54 E-value=47 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEeeeEEeeceeeeeeeecCC
Q 031863 117 EVELGLTIDLPIIGNFTIPLSK 138 (151)
Q Consensus 117 ~l~g~l~~~~~~~G~~~ip~~~ 138 (151)
+++|.+.+..|++|.+.+||..
T Consensus 35 ~vrG~L~~~~pllGEv~lPF~S 56 (134)
T PF12723_consen 35 RVRGELRVPVPLLGEVDLPFRS 56 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEEEE
T ss_pred eeEEEEeeccccccccccchhh
Confidence 6899999999999999999985
No 64
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=30.51 E-value=1.4e+02 Score=19.32 Aligned_cols=34 Identities=3% Similarity=-0.042 Sum_probs=25.4
Q ss_pred EEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 61 SYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 61 ~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.+..++||+.++++...+...+++.......|.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 6688899999988888888777765555555444
No 65
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=29.59 E-value=67 Score=20.09 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=27.0
Q ss_pred CCeeeeeeecccChhhhhhhhhhhc--CCcceeeEEE
Q 031863 85 NDKTLLQVPMKVPPNILVSLAKDIG--ADWDIDYEVE 119 (151)
Q Consensus 85 ~g~~~v~lpv~~~~~~L~~~~~~l~--~~~~i~Y~l~ 119 (151)
-....+.||..++..+|-.+++.+. ..+.++|.+-
T Consensus 15 ~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~ 51 (65)
T PF08154_consen 15 VPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFL 51 (65)
T ss_pred CCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEE
Confidence 3457899999999999999998776 3357777654
No 66
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=28.99 E-value=1.1e+02 Score=19.92 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=31.4
Q ss_pred eeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 42 DAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 42 ~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.+.|.+.|+..-++. +.++-|.. .+......+|+|+++..+..++
T Consensus 21 ~l~l~l~N~g~~~~~-----~~v~~~~y---~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVT-----FTVYDNAY---GGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEE-----EEEEeCCc---CCCCCEEEEECCCCEEEEEEee
Confidence 788889999766553 44444332 2345678899999998888876
No 67
>PF02381 MraZ: MraZ protein; InterPro: IPR020603 this entry represents the 70 amino acid region found duplicated in the bacterial proteins MraZ. These proteins may be DNA-binding transcription factors, its members are probably enzymes containing a conserved DXXXR motif that probably forms part of the active site.; PDB: 1N0F_E 1N0E_F 1N0G_A.
Probab=28.04 E-value=37 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=12.4
Q ss_pred eeeeeeecCCcceeecCC
Q 031863 129 IGNFTIPLSKKGEFKLPS 146 (151)
Q Consensus 129 ~G~~~ip~~~~G~i~lp~ 146 (151)
.|.....+|.+|++.+|+
T Consensus 3 ~g~~~~~lD~kGRi~iP~ 20 (72)
T PF02381_consen 3 AGAYEHTLDDKGRISIPA 20 (72)
T ss_dssp TTEEEEEB-TTSEEE--C
T ss_pred CCCeeCCcCCCCCEecCH
Confidence 467778999999999986
No 68
>PF14343 PrcB_C: PrcB C-terminal
Probab=27.03 E-value=52 Score=20.19 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=23.7
Q ss_pred cccccccccceEEeeEEeeeCCCCCccCeeEEE
Q 031863 29 VDLKNVSREAVEYDAKVSVDNPYSHSLPICEIS 61 (151)
Q Consensus 29 v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~ 61 (151)
+++.++...+-++.+.++...|.+=.+--..+.
T Consensus 18 I~v~~v~~~~~~i~V~~~~~~P~~~~~~~q~iT 50 (60)
T PF14343_consen 18 IEVESVEETENTIVVYVKLTEPAPGEMVTQVIT 50 (60)
T ss_pred EEEEEEEEeCCEEEEEEEEECCCCCCEeccccc
Confidence 456667777888999999999987555544443
No 69
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=26.50 E-value=68 Score=25.76 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=29.6
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLL 90 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v 90 (151)
.+.|.||-|+=+++..+ .++|+.+.. +...|+++++..+
T Consensus 184 ~l~i~NPTPYyitl~~l----~v~~~~i~~----~~~mIaPfs~~~~ 222 (246)
T PRK15233 184 SIVIKNPTSSYVNIANI----KSGNLSFNI----PNGYIEPFGYAQL 222 (246)
T ss_pred EEEEECCCCcEEEeEeE----EECCcccCC----CCceECCCCcccc
Confidence 38999999999999875 468886421 3456888888864
No 70
>COG5556 Uncharacterized conserved protein [Function unknown]
Probab=26.36 E-value=33 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=24.6
Q ss_pred ChhHHHHHhhhHHHHhccCCCCcceeeccc
Q 031863 1 MAQFLDKAKNFVAEKMANIEKPEAEITDVD 30 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~P~V~l~~v~ 30 (151)
||..-|.+|-||-|.++-|.+|.+--..++
T Consensus 1 kAkLsdevKtfIvQalACFDs~S~Va~aVk 30 (110)
T COG5556 1 KAKLSDEVKTFIVQALACFDSPSVVAAAVK 30 (110)
T ss_pred CCcccHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 466678999999999999999987655444
No 71
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=26.31 E-value=1.3e+02 Score=20.19 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=24.5
Q ss_pred ccceEEeeEEeeeCCCCCccCeeEEEEEEe-eCCeEE
Q 031863 36 REAVEYDAKVSVDNPYSHSLPICEISYTFK-SAGKVI 71 (151)
Q Consensus 36 ~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-vnG~~v 71 (151)
....-+.++++|.|...-++.+...++.+. -+|...
T Consensus 33 ~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~ 69 (123)
T PF11611_consen 33 EGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKY 69 (123)
T ss_dssp --SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B-
T ss_pred CCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEE
Confidence 345679999999999999999998888886 454433
No 72
>PF07660 STN: Secretin and TonB N terminus short domain; InterPro: IPR011662 This is a conserved region found at the N-terminal region of bacterial proteins involved in either protein secretion or the uptake of selective substrates, including: Bundle-forming pilus protein B, an outer-membrane protein absolutely required for pilus biogenesis, and for enteropathogenic Escherichia coli localized adherence and autoaggregation []. PilQ, which is required for type IV pilus biogenesis and competence and is thought to function both as a pore for exit of the pilus and as a channel for entry of haem and antimicrobial agents and uptake of transforming DNA []. PupB, a specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions []. TonB, which couples the electrochemical potential of the cytoplasmic membrane to the active transport of iron-siderophores and vitamin B12 across the outer membrane []. ; GO: 0019867 outer membrane; PDB: 2D1U_A 1ZZV_A 2W75_B 2O5P_A 2W77_A 2W16_A 2W6U_B 2W6T_A 2W76_B 2W78_B ....
Probab=25.88 E-value=66 Score=18.58 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=22.4
Q ss_pred cccChhhhhhhhhhhcCCcceeeEEEeeeEE
Q 031863 94 MKVPPNILVSLAKDIGADWDIDYEVELGLTI 124 (151)
Q Consensus 94 v~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~ 124 (151)
+.+....+.+++..+-++..+.|++.++..+
T Consensus 18 l~~~~~~~~~~L~~ll~~t~l~y~~~~~~i~ 48 (52)
T PF07660_consen 18 LDVKNMSLEEALDQLLKGTGLTYKISGNTIV 48 (52)
T ss_dssp EE-EEE-HHHHHHHHTTTSTEEEEEETTEEE
T ss_pred EEcCCcCHHHHHHHHHccCCcEEEEECCEEE
Confidence 3445567788888888899999999887643
No 73
>PF11209 DUF2993: Protein of unknown function (DUF2993); InterPro: IPR021373 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.54 E-value=2.9e+02 Score=20.72 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=54.4
Q ss_pred HHHhhhHHHHhccCCCCcceeeccccc----cccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCC
Q 031863 6 DKAKNFVAEKMANIEKPEAEITDVDLK----NVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGS 81 (151)
Q Consensus 6 ~~~~~~~~~~~~~~~~P~V~l~~v~~~----~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~ 81 (151)
+.+...+.+++..-++|+|++.+.=+. .-+....++.+.=-.. ..-++.+..+ ++.+.|.++-.+..- ...
T Consensus 12 ~~i~~~l~~~~~~~~~~~V~i~g~P~l~qll~G~~~~v~v~~~~~~~--~~~~~~~~~~--~~~~~~v~~~~~~~~-~g~ 86 (225)
T PF11209_consen 12 KQIADALRAQLDLAEDPEVSIGGFPFLTQLLGGRLDSVTVDAPGVTV--DGQGLRIAEV--TVTAEDVRLDPSDLL-SGD 86 (225)
T ss_pred HHHHHHHHHhcCCCCCceEEEcCcCcHHHHhCCEeCeEEEEeCCcEE--eccCcceeEE--EEEEEEEEEcchhcc-ccc
Confidence 346667777776689999999887742 2333333333322221 1123334444 444455544444321 111
Q ss_pred ccCCCeeeeeeecccChhhhhhhhh
Q 031863 82 LKGNDKTLLQVPMKVPPNILVSLAK 106 (151)
Q Consensus 82 Ipa~g~~~v~lpv~~~~~~L~~~~~ 106 (151)
+....-..++..+++++.+|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~l~~~~l~~~l~ 111 (225)
T PF11209_consen 87 VSLVRADSLTATVTLSEDDLNRALG 111 (225)
T ss_pred ccccceEEEEEEEEECHHHHHHHHc
Confidence 3344467788888899999888876
No 74
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=25.12 E-value=37 Score=30.44 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.0
Q ss_pred ccCeeEEEEEEeeCCeEEeeeec
Q 031863 54 SLPICEISYTFKSAGKVIASGTM 76 (151)
Q Consensus 54 ~L~i~~l~y~l~vnG~~v~~G~~ 76 (151)
+..+.|..||+-+||..++-|..
T Consensus 507 p~~~rgqhYDlV~NGvElGGGSi 529 (628)
T KOG2411|consen 507 PEKIRGQHYDLVVNGVELGGGSI 529 (628)
T ss_pred chhhhcceeeeEEccEeecCcee
Confidence 45789999999999999999854
No 75
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=25.03 E-value=1.1e+02 Score=20.08 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHhhhHHHHhccCCCCcceeecccccccc--ccceEEeeEEeee
Q 031863 7 KAKNFVAEKMANIEKPEAEITDVDLKNVS--REAVEYDAKVSVD 48 (151)
Q Consensus 7 ~~~~~~~~~~~~~~~P~V~l~~v~~~~~~--~~~~~~~~~l~V~ 48 (151)
.++.-|.+.+..| .|+++..++++..-. .....|.++..+.
T Consensus 48 ~i~~~I~~aI~~~-EPRl~~~~V~~~~~~~~~~~l~~~I~~~l~ 90 (99)
T PF04965_consen 48 AIRREIREAIQRF-EPRLKVVSVEVEEDDDEDGKLTFTISGTLR 90 (99)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEEEEE-TTGGGTEEEEEEEEEET
T ss_pred HHHHHHHHHHHHh-CCcEEEEEEEEEecCCCCCEEEEEEEEEEE
Confidence 3455555666666 899999999999855 4445555555443
No 76
>PF14274 DUF4361: Domain of unknown function (DUF4361); PDB: 3P02_A 3SOT_D 3NQK_A.
Probab=24.76 E-value=1.7e+02 Score=22.03 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=37.3
Q ss_pred eeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhhhhhhhcCCcceeeEEEee
Q 031863 42 DAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDIDYEVELG 121 (151)
Q Consensus 42 ~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~ 121 (151)
.+++...+||+ ++ .+.++|++.-+-...-..+-|-.-...++|.+.-.+.+... .++.++.|+++|.
T Consensus 78 ~~tl~~~~~~~------~i--~f~~~~~~~y~i~e~mD~~~pYL~h~yiti~l~Y~f~D~T~-----~pg~~i~y~veGs 144 (157)
T PF14274_consen 78 TVTLSSDDPNP------KI--KFKSYGQPTYSISEEMDAVRPYLKHRYITINLSYEFVDYTS-----VPGYPIKYRVEGS 144 (157)
T ss_dssp BEEEEECCTTG------CC----EESS--EEEEEEEE-SSSTTEEEEEEEEEEEEEEEE-ST-----TTT--EEEEEEEE
T ss_pred eEEEEecCCCc------cc--ceEECCCccEEEEEEeCCCccceeEEEEEEEEEEEEEEecc-----CCCcEEEEEEEEE
Confidence 34555555553 33 33346665555544444455555556666665555555444 3577899999999
Q ss_pred eEEe
Q 031863 122 LTID 125 (151)
Q Consensus 122 l~~~ 125 (151)
+...
T Consensus 145 ltme 148 (157)
T PF14274_consen 145 LTME 148 (157)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9764
No 77
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=24.45 E-value=2.5e+02 Score=19.53 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=33.8
Q ss_pred eeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeec
Q 031863 25 EITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTM 76 (151)
Q Consensus 25 ~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~ 76 (151)
.+.++++...-.-+.++.+++++.--. -.+-.++..++++|..+++|+.
T Consensus 88 ~~~~~kF~~~v~pGd~l~i~~~i~~~~---~~~~~~~~~~~~~g~~va~~~~ 136 (140)
T TIGR01750 88 GIDKAKFRRPVVPGDQLILHAEFLKKR---RKIGKFKGEATVDGKVVAEAEI 136 (140)
T ss_pred ecceeEECCccCCCCEEEEEEEEEEcc---CCEEEEEEEEEECCEEEEEEEE
Confidence 345667766666677777777776322 2455667778889999999875
No 78
>PF06674 DUF1176: Protein of unknown function (DUF1176); InterPro: IPR009560 This family consists of several hypothetical bacterial proteins of around 340 residues in length. Members of this family contain six highly conserved cysteine residues. The function of this family is unknown.
Probab=23.67 E-value=2.2e+02 Score=23.76 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=50.3
Q ss_pred eccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhhhhh
Q 031863 27 TDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAK 106 (151)
Q Consensus 27 ~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~~~~ 106 (151)
.++.+.+--...+...+++.+.-+.. +.+ .-..++++||++++........ -+.+. .+++-.+...++.
T Consensus 42 ~sl~ltR~AG~~~~v~~~l~~~~~~~-~~~--~~~~~l~ldg~~lg~~~~~~~~-~~~~~-------~~l~~~q~~alL~ 110 (340)
T PF06674_consen 42 VSLLLTRDAGADAPVSARLTLAEPDE-DDP--PGKIELLLDGKPLGPLPAEWDD-EPDMD-------ATLSGAQTQALLA 110 (340)
T ss_pred EEEEEEEccCCCCCEEEEEEeCCccc-cCC--CCceEEEECCeECCCccccccc-ccccc-------ccCCHHHHHHHHH
Confidence 34567776777788888888844433 222 5566899999999875444321 11111 1666677777777
Q ss_pred hhcCCcceeeEE
Q 031863 107 DIGADWDIDYEV 118 (151)
Q Consensus 107 ~l~~~~~i~Y~l 118 (151)
.+.+++++..+.
T Consensus 111 al~~~~~i~~~~ 122 (340)
T PF06674_consen 111 ALRNGQKIEFRL 122 (340)
T ss_pred HhhcCCeEEEEe
Confidence 777776664443
No 79
>PF15516 BpuSI_N: BpuSI N-terminal domain
Probab=23.49 E-value=1.1e+02 Score=22.72 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHhhhHHHHhccCCCCcceeecccccc-ccccceEEeeEEeeeCCCCC
Q 031863 4 FLDKAKNFVAEKMANIEKPEAEITDVDLKN-VSREAVEYDAKVSVDNPYSH 53 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~P~V~l~~v~~~~-~~~~~~~~~~~l~V~NPN~~ 53 (151)
+-..|+.++++.-..+++|=.-++++++.. ..-+.-+=.+.-++.||-|+
T Consensus 75 Y~~QA~SYv~Ea~~~le~pYy~itNLEV~~~Fk~d~~rp~v~~qi~~psp~ 125 (159)
T PF15516_consen 75 YRMQAQSYVQEANQKLESPYYAITNLEVTDFFKYDGNRPSVEQQIIEPSPF 125 (159)
T ss_pred HHHHHHHHHHHhcccccCceEEEechhhheeeeeCCCCCCeeeeeccCCce
Confidence 556799999988889999999999888876 33344445556667677654
No 80
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=23.36 E-value=58 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=17.9
Q ss_pred HHHHHhhhHHHHhcc----CCCCcceee
Q 031863 4 FLDKAKNFVAEKMAN----IEKPEAEIT 27 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~P~V~l~ 27 (151)
=|++|+||+...++. ...|++++.
T Consensus 68 ~L~~A~g~ir~~l~~~~~lr~~PeL~F~ 95 (118)
T COG0858 68 ALNKAKGFIRSELGKRLRLRKTPELHFV 95 (118)
T ss_pred HHHHhHHHHHHHHHHhCCeEeCCeEEEE
Confidence 489999999866554 388888763
No 81
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.22 E-value=2.1e+02 Score=21.78 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=51.0
Q ss_pred CCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCe-------EEeeeecCC-CCCccCCCeeeee
Q 031863 20 EKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGK-------VIASGTMAD-PGSLKGNDKTLLQ 91 (151)
Q Consensus 20 ~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~-------~v~~G~~~~-~~~Ipa~g~~~v~ 91 (151)
..|.+-+.+--..+.-..+.++.+++.|+|-.+- -.|+|.+.+. .+.+|..+. .-+||++++.+..
T Consensus 19 ~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~------~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~ 92 (181)
T PF05753_consen 19 SPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSS------AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHS 92 (181)
T ss_pred CCcEEEEEEeeccccccCCcEEEEEEEEEECCCC------eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEE
Confidence 4667777777777777789999999999999864 4567776553 567775544 4588888877666
Q ss_pred eeccc
Q 031863 92 VPMKV 96 (151)
Q Consensus 92 lpv~~ 96 (151)
+.++-
T Consensus 93 ~vv~p 97 (181)
T PF05753_consen 93 YVVRP 97 (181)
T ss_pred EEEee
Confidence 65553
No 82
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=22.68 E-value=71 Score=21.95 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=34.8
Q ss_pred ccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCC---eEEeeeecCCCCCccCCCeeeeeeecccChhhh
Q 031863 34 VSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAG---KVIASGTMADPGSLKGNDKTLLQVPMKVPPNIL 101 (151)
Q Consensus 34 ~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG---~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L 101 (151)
.+....+=.-+++|.|--.-+ ..|++.+.| .++.. ....++|+|++...+.+-+++....+
T Consensus 26 ~~dg~I~N~Y~lkl~Nkt~~~-----~~~~i~~~g~~~~~l~~--~~~~i~v~~g~~~~~~v~v~~p~~~~ 89 (118)
T PF11614_consen 26 LSDGSIRNQYTLKLTNKTNQP-----RTYTISVEGLPGAELQG--PENTITVPPGETREVPVFVTAPPDAL 89 (118)
T ss_dssp ----SEEEEEEEEEEE-SSS------EEEEEEEES-SS-EE-E--S--EEEE-TT-EEEEEEEEEE-GGG-
T ss_pred cCCCeEEEEEEEEEEECCCCC-----EEEEEEEecCCCeEEEC--CCcceEECCCCEEEEEEEEEECHHHc
Confidence 344456666778888876654 456666654 44422 45688999999999999999888763
No 83
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=22.49 E-value=2.3e+02 Score=18.47 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred ccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCC--eEEeeeecCCCCCccCCCeeeeeeecc
Q 031863 28 DVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAG--KVIASGTMADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 28 ~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG--~~v~~G~~~~~~~Ipa~g~~~v~lpv~ 95 (151)
.++++.+. .+.+....+.+.|--..+. .|.+.... ....+= ......|+++.+..+.|.+.
T Consensus 10 ~ldFG~v~-~g~~~~~~v~l~N~s~~p~-----~f~v~~~~~~~~~~~v-~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 10 ELDFGNVF-VGQTYSRTVTLTNTSSIPA-----RFRVRQPESLSSFFSV-EPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEEeeEEc-cCCEEEEEEEEEECCCCCE-----EEEEEeCCcCCCCEEE-ECCCCEECCCCEEEEEEEEE
Confidence 34555554 4567789999999988874 44444432 223332 33456788888887777765
No 84
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=22.09 E-value=2.7e+02 Score=22.37 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=31.8
Q ss_pred eEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeee
Q 031863 43 AKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQ 91 (151)
Q Consensus 43 ~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~ 91 (151)
+..++.|+-+.+|+=. .-.|+.+|.-++++..+. ++++.+-.+.
T Consensus 170 l~a~~~n~~~~~L~~G--~~~v~~dg~~vG~~~l~~---~~~ge~~~l~ 213 (317)
T PF13598_consen 170 LVARFKNTSGLPLLPG--PVSVYRDGTFVGESRLPH---TAPGEEFELS 213 (317)
T ss_pred EEEEEECCCCCcccCC--cEEEEECCEEEEeeecCC---CCCCCEEEEE
Confidence 4567889988888744 559999999999987765 5555554443
No 85
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=21.71 E-value=2.6e+02 Score=18.76 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=38.2
Q ss_pred cccceEEeeEEeeeCCCCCccCeeEEEEEEeeC-CeEEeeeecCCCCCccCCCeeeeeeeccc
Q 031863 35 SREAVEYDAKVSVDNPYSHSLPICEISYTFKSA-GKVIASGTMADPGSLKGNDKTLLQVPMKV 96 (151)
Q Consensus 35 ~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vn-G~~v~~G~~~~~~~Ipa~g~~~v~lpv~~ 96 (151)
+...-...+.+...|- -+-++.++.+.+.+. +..+.-... ...+|++.+..+-.+.++-
T Consensus 20 ~~~~~~~~i~~~f~N~--s~~~it~f~~q~avpk~~~l~l~~~-s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 20 SPNPNQGRIKLTFGNK--SSQPITNFSFQAAVPKSFKLQLQPP-SSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp CCETTEEEEEEEEEE---SSS-BEEEEEEEEEBTTSEEEEEES-S-SSB-TTTEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEC--CCCCcceEEEEEEeccccEEEEeCC-CCCeeCCCCeEEEEEEEEE
Confidence 4567778888899886 677788998888664 444444333 4678888777666666655
No 86
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=21.39 E-value=1.4e+02 Score=23.38 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=32.5
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.+.|.||-|+=+.+.++.. +..+|+.+.. ...-|.++++..+.++
T Consensus 156 ~l~v~N~~p~~i~l~~l~~-~~~~g~~~~~----~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 156 NLVVSNPSPYVVRLGQQVI-LLPSGKVVAL----PKPYILPGESLTVAIT 200 (230)
T ss_pred EEEEECCCCEEEEEeccEE-EccCCceecc----CCceECCCceEEEEcc
Confidence 4899999999999998532 2336775432 2256889999888876
No 87
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=21.22 E-value=3e+02 Score=19.21 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=22.7
Q ss_pred cceEEeeEEeeeCCCCCccCeeEEEEEEeeC
Q 031863 37 EAVEYDAKVSVDNPYSHSLPICEISYTFKSA 67 (151)
Q Consensus 37 ~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vn 67 (151)
-+|.|.+.++..+| |.-.-+.+.+.+.+.
T Consensus 31 RGQ~F~i~l~f~r~--~~~~~d~l~l~~~~G 59 (118)
T PF00868_consen 31 RGQPFTITLRFNRP--FDPSKDQLSLEFETG 59 (118)
T ss_dssp TTSEEEEEEEESSS----TTTEEEEEEEEES
T ss_pred CCCEEEEEEEEcCC--cCCCCcEEEEEEEEe
Confidence 47899999999888 677778888887764
Done!