Query 031863
Match_columns 151
No_of_seqs 105 out of 323
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo8_A AT1G01470; structural g 100.0 3.2E-48 1.1E-52 287.8 6.9 151 1-151 1-151 (151)
2 1yyc_A LEA protein, putative l 100.0 3E-47 1E-51 288.0 11.8 151 1-151 24-174 (174)
3 3but_A Uncharacterized protein 99.9 1.2E-23 4.1E-28 153.2 11.4 113 24-137 3-116 (136)
4 2xzz_A Protein-glutamine gamma 94.0 0.03 1E-06 38.0 2.6 83 19-108 3-85 (102)
5 3idu_A Uncharacterized protein 86.0 4.8 0.00016 28.0 7.9 70 19-95 14-83 (127)
6 1ex0_A Coagulation factor XIII 81.7 1.1 3.8E-05 40.0 3.7 104 13-125 621-724 (731)
7 1g0d_A Protein-glutamine gamma 79.4 1.4 4.7E-05 39.2 3.6 106 11-125 574-680 (695)
8 2q3z_A Transglutaminase 2; tra 78.7 1.8 6.1E-05 38.5 4.1 104 12-124 577-682 (687)
9 2l0d_A Cell surface protein; s 78.0 14 0.00047 25.1 7.7 67 21-93 2-68 (114)
10 1yq2_A Beta-galactosidase; gly 76.9 4.6 0.00016 37.3 6.4 51 44-94 625-679 (1024)
11 3isy_A Bsupi, intracellular pr 76.6 5.8 0.0002 27.4 5.4 73 39-124 18-103 (120)
12 3mnm_A ADP-ribosylation factor 75.8 16 0.00056 24.9 7.7 91 40-146 32-122 (123)
13 1vjj_A Protein-glutamine gluta 74.5 2.5 8.5E-05 37.6 3.8 93 11-110 583-676 (692)
14 4djm_A DRAB; chaperone, PILI; 69.1 9.6 0.00033 29.2 5.7 42 44-94 171-212 (239)
15 2co7_B SAFB chaperone, putativ 61.5 12 0.00041 28.2 4.8 42 44-94 154-195 (221)
16 2kdd_A Borealin; protein dimer 61.2 1.9 6.7E-05 27.2 0.2 34 61-95 7-40 (76)
17 3cmg_A Putative beta-galactosi 61.2 49 0.0017 28.7 9.3 114 21-144 148-278 (667)
18 4ay0_A Chaperone protein CAF1M 59.9 11 0.00037 28.5 4.3 43 44-96 149-191 (218)
19 1jz7_A Lactase, beta-galactosi 58.2 16 0.00053 33.8 5.8 49 44-94 635-684 (1023)
20 3bga_A Beta-galactosidase; NYS 57.7 20 0.00067 33.1 6.3 49 44-94 631-681 (1010)
21 3qbt_B Inositol polyphosphate 51.9 55 0.0019 22.5 7.4 78 16-98 19-102 (140)
22 3fn9_A Putative beta-galactosi 51.9 59 0.002 28.5 8.3 115 21-144 160-292 (692)
23 2r39_A FIXG-related protein; s 49.4 17 0.00059 24.2 3.6 60 34-101 26-88 (118)
24 3zy7_A AP-1 complex subunit ga 47.9 61 0.0021 21.9 7.8 57 39-97 29-85 (122)
25 3o0l_A Uncharacterized protein 46.1 17 0.00059 24.5 3.1 55 36-93 35-93 (112)
26 1l4i_A SFAE protein; periplasm 43.2 16 0.00054 27.2 2.8 41 44-94 139-179 (206)
27 3f5r_A FACT complex subunit PO 42.8 9.3 0.00032 28.5 1.4 56 4-61 106-162 (191)
28 1klf_A FIMC chaperone, chapero 40.0 16 0.00055 27.1 2.4 41 44-94 139-179 (205)
29 2ia7_A Tail lysozyme, putative 39.4 77 0.0026 21.4 5.8 55 7-66 74-130 (134)
30 1n0w_B Breast cancer type 2 su 39.3 9.6 0.00033 20.5 0.7 13 2-14 20-32 (35)
31 1gyu_A Adapter-related protein 38.2 98 0.0034 21.4 8.0 58 39-98 47-104 (140)
32 2lo0_A Uncharacterized protein 36.6 19 0.00066 22.8 2.0 18 2-19 40-57 (75)
33 2e9g_A AP-1 complex subunit ga 34.4 1.1E+02 0.0037 20.8 6.5 54 39-94 38-91 (131)
34 3mx7_A FAS apoptotic inhibitor 33.7 32 0.0011 22.5 2.8 27 41-72 61-87 (90)
35 2kut_A Uncharacterized protein 29.7 88 0.003 21.3 4.6 56 37-97 14-74 (122)
36 2g30_A AP-2 complex subunit be 29.3 1E+02 0.0035 23.6 5.5 60 37-98 53-113 (258)
37 2jwy_A Uncharacterized lipopro 27.9 1.2E+02 0.004 22.0 5.1 51 41-93 78-138 (168)
38 2fsd_A RBP, putative baseplate 24.9 78 0.0027 21.6 3.6 23 44-66 117-139 (142)
39 1w8o_A Bacterial sialidase; 3D 24.2 1E+02 0.0035 25.7 5.0 55 39-98 373-427 (601)
40 2wq4_A Lectin; LUNG, pathogen, 24.0 1.8E+02 0.0062 20.0 5.5 71 30-100 28-99 (156)
41 4gio_A Putative lipoprotein; u 23.3 70 0.0024 21.2 3.1 46 44-92 39-89 (107)
42 3nqn_A Uncharacterized protein 23.0 52 0.0018 23.7 2.5 22 117-138 47-68 (158)
43 4ah6_A Aspartate--tRNA ligase, 22.4 43 0.0015 29.2 2.4 23 55-77 481-503 (617)
44 2v3s_A Serine/threonine-protei 22.2 1.2E+02 0.004 20.0 3.9 33 41-77 3-35 (96)
45 2qsv_A Uncharacterized protein 21.7 1.7E+02 0.0057 21.4 5.3 69 20-96 116-185 (220)
46 3rfr_A PMOB; membrane, oxidore 21.1 3.6E+02 0.012 22.4 10.3 83 37-127 296-396 (419)
No 1
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=100.00 E-value=3.2e-48 Score=287.82 Aligned_cols=151 Identities=64% Similarity=1.106 Sum_probs=148.6
Q ss_pred ChhHHHHHhhhHHHHhccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCC
Q 031863 1 MAQFLDKAKNFVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPG 80 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~ 80 (151)
|+||+||||+|++||++++++|+|++++++|.++++.+++|.++++|+|||+++|++++++|++++||+++++|.++++.
T Consensus 1 ~~~~~~~~~~f~~~k~~~~~~P~v~v~~v~~~~~~~~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~ 80 (151)
T 1xo8_A 1 MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPG 80 (151)
T ss_dssp CTTSCSCCCTTCSSSCCCCCSCCCBCSEEEECCCTTTEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECC
T ss_pred ChhHHHHHHHHHHHhhcCCCCCEEEEEEeEEeccCcceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCeeeeeeecccChhhhhhhhhhhcCCcceeeEEEeeeEEeeceeeeeeeecCCcceeecCCccCCC
Q 031863 81 SLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDIDYEVELGLTIDLPIIGNFTIPLSKKGEFKLPSLSDIF 151 (151)
Q Consensus 81 ~Ipa~g~~~v~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~~~~~~G~~~ip~~~~G~i~lp~~p~~~ 151 (151)
+|||+|+++++||+++++..+.++++++.+++.++|+++|++.+++|++|.+++||+++|+++||++|++|
T Consensus 81 ~ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~i~lp~~G~~tip~~~~Gei~lp~~~d~~ 151 (151)
T 1xo8_A 81 SLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151 (151)
T ss_dssp CCSSSSEEEEEECCCEEHHHHHHHHHHHHHHSEEEEEEEEEEEECCTTTSSEEEEEEEEEEEECCSCSSCC
T ss_pred EECCCCcEEEEEEEEEEHHHHHHHHHhcccCCcccEEEEEEEEEcccccCcEEEeEeeccEEECCCCCCCC
Confidence 99999999999999999999999999998889999999999999999889999999999999999999997
No 2
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=100.00 E-value=3e-47 Score=288.02 Aligned_cols=151 Identities=60% Similarity=1.024 Sum_probs=148.6
Q ss_pred ChhHHHHHhhhHHHHhccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCC
Q 031863 1 MAQFLDKAKNFVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPG 80 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~ 80 (151)
|+||+||||+|++||++++++|+|++++++|.++++.+++|.++++|+|||+++|++++++|++++||+++++|.+++++
T Consensus 24 ~~~~~~~~k~f~~~ki~~~~~PeV~v~~v~~~~~~l~~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~ 103 (174)
T 1yyc_A 24 ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPG 103 (174)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCCEEEEEEEEEEEECSSSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCC
T ss_pred hhHHHHHhhhhHHHhhcCCCCCEEEEEEeEEeccccceEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCeeeeeeecccChhhhhhhhhhhcCCcceeeEEEeeeEEeeceeeeeeeecCCcceeecCCccCCC
Q 031863 81 SLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDIDYEVELGLTIDLPIIGNFTIPLSKKGEFKLPSLSDIF 151 (151)
Q Consensus 81 ~Ipa~g~~~v~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~~~~~~G~~~ip~~~~G~i~lp~~p~~~ 151 (151)
+|||+|++.++||+++++.++.++++++.+++.++|+++|++.+++|++|.+++||+++|+++||++|++|
T Consensus 104 tIpa~g~~~v~Vpv~v~~~~l~~~~~~l~~~~~i~Y~L~g~L~id~pv~G~~tip~s~~Gei~LP~l~d~~ 174 (174)
T 1yyc_A 104 SLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDIGLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 174 (174)
T ss_dssp BCCSSEEEEEEEEEEESHHHHHHTCCCCCSSEEECEEEEEEEEEECTTSSEEEEEEEEECCEEECTTSSCC
T ss_pred eECCCCcEEEEEEEEEEHHHHHHHHHhcCCCCccceEEEEEEEeccCCcCCEEEeEeeceEEECCCCCCcC
Confidence 99999999999999999999999999998899999999999999999889999999999999999999997
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=99.90 E-value=1.2e-23 Score=153.19 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=101.5
Q ss_pred ceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhh
Q 031863 24 AEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVS 103 (151)
Q Consensus 24 V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~ 103 (151)
|+-.+.+|+.++.+.++|.++|+|+|||++|++++|++|++++||+++++|.+++.++|||+|++++++++++++..+.+
T Consensus 3 v~~i~~~WG~v~~~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~ 82 (136)
T 3but_A 3 LESVKAMWGVVTDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE 82 (136)
T ss_dssp EEEEEEEECCCCSSEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT
T ss_pred ccceeeeeccEeCcEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH
Confidence 45567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh-hhcCCcceeeEEEeeeEEeeceeeeeeeecC
Q 031863 104 LAK-DIGADWDIDYEVELGLTIDLPIIGNFTIPLS 137 (151)
Q Consensus 104 ~~~-~l~~~~~i~Y~l~g~l~~~~~~~G~~~ip~~ 137 (151)
+|. ++.++++..|+++.++.++++ .+.+++|+.
T Consensus 83 ~~~~hi~nge~s~l~i~~~~~l~v~-g~~~~vp~~ 116 (136)
T 3but_A 83 WWVTHIANGEKTKIRVAIKPTIEIG-GRDVEVPVF 116 (136)
T ss_dssp HHHHHHHTTSEEEEEEEEEEEEECC--CCEECCCE
T ss_pred HHHHHhhcCCceEEEEEEEEEEEeC-CEEEEEccc
Confidence 765 557777888888888888877 456777765
No 4
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=94.05 E-value=0.03 Score=38.03 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=54.1
Q ss_pred CCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccCh
Q 031863 19 IEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 19 ~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
+..|.+++ ++.+-.--+..+.++++.+||-+++| .+..+.++=-| +..+..-+-..|+++++..+++.++=..
T Consensus 3 ~~~P~i~I---~v~g~~~v~~~l~v~vsf~NPL~~~L--~~c~~~vEG~G--L~~~~~~~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 3 YFQSMLSL---TLLGAAVVGQECEVQIVFKNPLPVTL--TNVVFRLEGSG--LQRPKILNVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp ---CEEEE---EESSCCCSSSCEEEEEEEECCSSSCB--CSEEEEEEETT--TEEEEEEEECCBCTTCEEEEEEEECCCS
T ss_pred ccCCcEEE---EECCCcccCCeEEEEEEEECCCCCcc--cCEEEEEECCC--CCcceEEEcCcCCCCCEEEEEEEEecCc
Confidence 46777766 55565566899999999999876655 56655555444 3333333446799999999998887666
Q ss_pred hhhhhhhhhh
Q 031863 99 NILVSLAKDI 108 (151)
Q Consensus 99 ~~L~~~~~~l 108 (151)
....+++.++
T Consensus 76 ~G~~~L~a~f 85 (102)
T 2xzz_A 76 PGPRQLIASL 85 (102)
T ss_dssp CSSCCCEEEE
T ss_pred ccceEEEEEE
Confidence 5555544443
No 5
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=86.04 E-value=4.8 Score=27.96 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=52.3
Q ss_pred CCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecc
Q 031863 19 IEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 19 ~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~ 95 (151)
+..|.+.+ ++..-.---.+....+++.|.|=...+ ..+..-.+++||..+.+- ...++++.++++++.++
T Consensus 14 ~~~pDL~V-~is~P~~v~~G~~~ti~vtV~N~G~~~--a~~~~V~lyvng~~v~t~----~v~La~G~s~tv~f~~~ 83 (127)
T 3idu_A 14 FEFPDLTV-EIKGPDVVGVNKLAEYEVHVKNLGGIG--VPSTKVRVYINGTLYKNW----TVSLGPKEEKVLTFNWT 83 (127)
T ss_dssp CSSCCEEE-EEESCSEECTTCCEEEEEEEEECSSSC--EEEEEEEEEETTEEEEEE----EEEECTTCEEEEEEEEC
T ss_pred ccCCCeEE-EecCCCcccCCCEEEEEEEEEECCCCc--cCCcEEEEEECCEEEeeE----EeccCCCCeEEEEEEEE
Confidence 67888877 554222223477888899999988766 578888999999987654 23699999999988865
No 6
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=81.70 E-value=1.1 Score=40.05 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=66.9
Q ss_pred HHHhccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeee
Q 031863 13 AEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQV 92 (151)
Q Consensus 13 ~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~l 92 (151)
+|+--.++.|.+++ ++.+----++.+.+++.+.||-+++ +.+..+.++ |--+..+..-+-..|+++++..+++
T Consensus 621 ~~~di~l~~P~l~I---~v~g~~~v~~~l~v~vsf~NPL~~~--L~~c~~~vE--G~GL~~~~~~~~~~v~pg~~~~~~~ 693 (731)
T 1ex0_A 621 KQKSTVLTIPEIII---KVRGTQVVGSDMTVTVQFTNPLKET--LRNVWVHLD--GPGVTRPMKKMFREIRPNSTVQWEE 693 (731)
T ss_dssp EEEEEECBCCCCEE---EEEECCBTTSCEEEEEEEECCSSSC--EEEEEEEEE--ETTTEEEEEEEEEEECTTCEEEEEE
T ss_pred EEEEEEEeCCCEEE---EeCCCcccCCeEEEEEEEECCCCCc--ccceEEEEE--CCCCCceeeEecCccCCCCEEEEEE
Confidence 34444578898876 4555556688999999999887655 566655555 4333334444445799999999999
Q ss_pred ecccChhhhhhhhhhhcCCcceeeEEEeeeEEe
Q 031863 93 PMKVPPNILVSLAKDIGADWDIDYEVELGLTID 125 (151)
Q Consensus 93 pv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~~ 125 (151)
.++-......+++..+..++- -.|+|...+.
T Consensus 694 ~~~P~~~G~r~L~a~f~s~~l--~~v~G~~~v~ 724 (731)
T 1ex0_A 694 VCRPWVSGHRKLIASMSSDSL--RHVYGELDVQ 724 (731)
T ss_dssp EECCSSCEEEEEEEEEECSSC--CCEEEEEEEE
T ss_pred EEEeccccceEEEEEEECCcc--cCcEeEEEEE
Confidence 888777666666555543321 1345555443
No 7
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=79.43 E-value=1.4 Score=39.20 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=68.7
Q ss_pred hHHHHhccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCC-CCccCCCeee
Q 031863 11 FVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADP-GSLKGNDKTL 89 (151)
Q Consensus 11 ~~~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~-~~Ipa~g~~~ 89 (151)
+.+|+--.++.|.+++ ++.+----++.+.+++...||-+++ +.+..+.++=-| +..+..-+- ..|+++++..
T Consensus 574 ~~~~~di~l~~P~l~I---~v~g~~~v~~~l~a~vsf~NPL~~~--L~~c~~~vEG~G--L~~~~~~~~~~~v~Pg~~~~ 646 (695)
T 1g0d_A 574 IMTVANIPLSTPELLV---QVPGKAVVWEPLTAYVSFTNPLPVP--LKGGVFTLEGAG--LLSATQIHVNGAVAPSGKVS 646 (695)
T ss_dssp EEEEEEEECBCCCCEE---ECCSCEETTCCEEEEEEEECCSSSC--EESCEEEEEETT--TEEEEEEECSSEECTTCEEE
T ss_pred EEEEEEEEEcCCCEEE---EeCCCcccCCeEEEEEEEECCCCCc--ccceEEEEECCC--CCcceEEecCCCcCCCCEEE
Confidence 3344555578899876 5566566689999999999887655 566655555444 334433333 5799999999
Q ss_pred eeeecccChhhhhhhhhhhcCCcceeeEEEeeeEEe
Q 031863 90 LQVPMKVPPNILVSLAKDIGADWDIDYEVELGLTID 125 (151)
Q Consensus 90 v~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~~ 125 (151)
+++.++=......+++..+..++- -.|+|...+.
T Consensus 647 ~~~~~~P~~~G~r~L~a~f~s~~l--~~v~G~~~v~ 680 (695)
T 1g0d_A 647 VKLSFSPMRTGVRKLLVDFDSDRL--KDVKGVTTVV 680 (695)
T ss_dssp EEEEECCSSCEEEEEEEEEECSSC--CCEEEEEEEE
T ss_pred EEEEEEcCCccceEEEEEEECCcc--cCcEeEEEEE
Confidence 999888777666666555543321 1356655544
No 8
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=78.67 E-value=1.8 Score=38.45 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=66.0
Q ss_pred HHHHhccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeee-ecCCC-CCccCCCeee
Q 031863 12 VAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASG-TMADP-GSLKGNDKTL 89 (151)
Q Consensus 12 ~~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G-~~~~~-~~Ipa~g~~~ 89 (151)
.+|+--.++.|.+++ ++.+----+..+.+++.+.||-+++|. +. .+.++|--+..+ ..-.- ..|+++++..
T Consensus 577 ~~~~di~l~~P~l~I---~v~g~~~v~~~~~v~v~f~NPL~~~L~--~c--~~~vEG~GL~~~~~~~~~~~~v~pg~~~~ 649 (687)
T 2q3z_A 577 LAERDLYLENPEIKI---RILGEPKQKRKLVAEVSLQNPLPVALE--GC--TFTVEGAGLTEEQKTVEIPDPVEAGEEVK 649 (687)
T ss_dssp EEEEEEECBCCCCEE---EEESCCSSSSCEEEEEEEECCSSSCBC--SE--EEEEECTTTCSSCEEEEECSCBCTTCEEE
T ss_pred EEEEEEEEeCCCEEE---EeCCCcccCCeEEEEEEEECCCCCccc--ce--EEEEECCCCCCCceEEecCCCcCCCCEEE
Confidence 334445578898876 555555668999999999999877665 44 344455544444 11222 5799999999
Q ss_pred eeeecccChhhhhhhhhhhcCCcceeeEEEeeeEE
Q 031863 90 LQVPMKVPPNILVSLAKDIGADWDIDYEVELGLTI 124 (151)
Q Consensus 90 v~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~ 124 (151)
+++.++-......+++..+..++- -.|+|...+
T Consensus 650 ~~~~~~P~~~G~~~L~a~f~s~~l--~~v~G~~~v 682 (687)
T 2q3z_A 650 VRMDLVPLHMGLHKLVVNFESDKL--KAVKGFRNV 682 (687)
T ss_dssp EEEEECCCSSSCEEEEEEEECSSS--CCEEEEEEE
T ss_pred EEEEEEeccccceEEEEEEEcCcc--cCcEeEEEE
Confidence 999888777666666555543321 134555443
No 9
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=77.97 E-value=14 Score=25.14 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeee
Q 031863 21 KPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVP 93 (151)
Q Consensus 21 ~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lp 93 (151)
.|.+.++.+.+.. -..+....+.+.|.|...-+- ......+++||..+...... .+.++.++++.+.
T Consensus 2 ~PDL~vt~itP~~-~~~~~~~ti~atVkN~G~~~a--~~~~V~ly~~g~~v~t~~v~---~LaaG~s~tv~~~ 68 (114)
T 2l0d_A 2 IPDLVPVSLTPVT-VVPNTVNTMTATIENQGNKDS--TSFNVSLLVDGIVVDTQTVT---SLESENSTNVDFH 68 (114)
T ss_dssp CCCEEEEEEECSE-ECTTSEEEEEEEEEECSSSCB--CCEEEEEEETTEEEEEEEES---CBCBTCEEEEEEE
T ss_pred CCCcEEEeccCCC-cCCCCeEEEEEEEEECCCCCC--CCEEEEEEECCEEEcceecc---cccCCCEEEEEEE
Confidence 3677777775443 234666788889999987663 55777899999988776432 4778888887765
No 10
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3
Probab=76.93 E-value=4.6 Score=37.34 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=42.3
Q ss_pred EEeeeCCCCCc-cCeeEEEEEEeeCCeEEeeeecC---CCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHS-LPICEISYTFKSAGKVIASGTMA---DPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~-L~i~~l~y~l~vnG~~v~~G~~~---~~~~Ipa~g~~~v~lpv 94 (151)
.++|.|-+.|. +.=-.+.|+|..||+.+.+|... ..+.|+|+++..++||+
T Consensus 625 ~~~v~N~~~f~~l~~~~~~w~~~~~g~~~~~g~~~~~~~~~~~~p~~~~~~~l~~ 679 (1024)
T 1yq2_A 625 TLAVANLRHTADASDVVLRWRVEHDGAVAASGEVAAEGSDGPLRAGESATIALPA 679 (1024)
T ss_dssp EEEEEECCSSCCSTTEEEEEEEEETTEEEEEEEEECBCSSSBCCTTCEEEEECCC
T ss_pred eEEEEEccCCCCCccCeEEEEEEECCEEEEeeEEeccccCccCCCCCceEEEecC
Confidence 48999999876 55557889999999999999982 12689999999999984
No 11
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=76.57 E-value=5.8 Score=27.42 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=49.1
Q ss_pred eEEeeEEeeeCCCCCccCee---EEEEEEee---CCeEEeeeecC-------CCCCccCCCeeeeeeecccChhhhhhhh
Q 031863 39 VEYDAKVSVDNPYSHSLPIC---EISYTFKS---AGKVIASGTMA-------DPGSLKGNDKTLLQVPMKVPPNILVSLA 105 (151)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~---~l~y~l~v---nG~~v~~G~~~-------~~~~Ipa~g~~~v~lpv~~~~~~L~~~~ 105 (151)
-.+.+.+.|.|+.+.++.+. |..|++.+ +|.++-.=... ...+|+++.+..++..+.
T Consensus 18 ~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~---------- 87 (120)
T 3isy_A 18 EQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWK---------- 87 (120)
T ss_dssp SCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEES----------
T ss_pred CeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeC----------
Confidence 37889999999999999986 78888887 67666532222 244677777777766654
Q ss_pred hhhcCCcceeeEEEeeeEE
Q 031863 106 KDIGADWDIDYEVELGLTI 124 (151)
Q Consensus 106 ~~l~~~~~i~Y~l~g~l~~ 124 (151)
..+..+ .|++++.+..
T Consensus 88 ~~~~pG---~Ytl~a~l~~ 103 (120)
T 3isy_A 88 EVPEPG---TYEVKVTFKG 103 (120)
T ss_dssp SCCCSE---EEEEEEEECC
T ss_pred CCCCCc---cEEEEEEEEe
Confidence 111222 6888887743
No 12
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=75.78 E-value=16 Score=24.95 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=52.3
Q ss_pred EEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccChhhhhhhhhhhcCCcceeeEEE
Q 031863 40 EYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDIDYEVE 119 (151)
Q Consensus 40 ~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~ 119 (151)
.+.+.+...|-.+. +|.++.+.+-+--..=.+-......+||+++...++=.+.+.... -..+..+..|+|
T Consensus 32 ~~~i~~~fsN~s~~--~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~-------~~~~~~lklR~k 102 (123)
T 3mnm_A 32 VIRIXSFFTNLSSS--PISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAP-------ANPSKALXVKWK 102 (123)
T ss_dssp CEEEEEEEEECSSS--CEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEEESCC-------CC---CCEEEEE
T ss_pred eEEEEEEEecCCCC--ccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEEecCC-------CCCCCCEEEEEE
Confidence 56778888886654 699999999885533333334446689998654444333332211 011234444444
Q ss_pred eeeEEeeceeeeeeeecCCcceeecCC
Q 031863 120 LGLTIDLPIIGNFTIPLSKKGEFKLPS 146 (151)
Q Consensus 120 g~l~~~~~~~G~~~ip~~~~G~i~lp~ 146 (151)
..... |. -|+++.|++.||+
T Consensus 103 lsY~~-----~g--~~~~E~g~~~lp~ 122 (123)
T 3mnm_A 103 VNYSV-----NS--TQAEETAVFTLPN 122 (123)
T ss_dssp EEEEE-----TT--EEEEEEEEEECCC
T ss_pred EEEEE-----CC--eEEEEEEEEecCC
Confidence 44432 22 3788999999986
No 13
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=74.47 E-value=2.5 Score=37.59 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=60.5
Q ss_pred hHHHHhccCCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeee-ecCCCCCccCCCeee
Q 031863 11 FVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASG-TMADPGSLKGNDKTL 89 (151)
Q Consensus 11 ~~~~~~~~~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G-~~~~~~~Ipa~g~~~ 89 (151)
+.+|+--.++.|.+++ ++.+----+..+.+++.+.||-+++|. +..+.+ +|--+..+ ..-+-..|+++++..
T Consensus 583 ~~~~~di~l~~P~l~I---~v~g~~~v~~~l~v~v~f~NPL~~~L~--~c~~~v--EG~GL~~~~~~~~~~~v~pg~~~~ 655 (692)
T 1vjj_A 583 VVVERDIILDNPTLTL---EVLNEARVRKPVNVQMLFSNPLDEPVR--DCVLMV--EGSGLLLGNLKIDVPTLGPKERSR 655 (692)
T ss_dssp EEEEEEEECBCCCEEE---EECSCCBTTSCEEEEEEEECCSSSCBC--SEEEEE--ECTTTSSSCEEEEECCBCTTCEEE
T ss_pred EEEEEEEEEcCCCEEE---EeCCCcccCCeEEEEEEEECCCCCccc--ceEEEE--ECCCCCCCceEEEcCccCCCCEEE
Confidence 3344455578898876 556666668999999999999876654 444444 44433322 111235799999999
Q ss_pred eeeecccChhhhhhhhhhhcC
Q 031863 90 LQVPMKVPPNILVSLAKDIGA 110 (151)
Q Consensus 90 v~lpv~~~~~~L~~~~~~l~~ 110 (151)
+++.++-......+++..+..
T Consensus 656 ~~~~~~P~~~G~r~L~a~f~s 676 (692)
T 1vjj_A 656 VRFDILPSRSGTKQLLADFSC 676 (692)
T ss_dssp EEEEECCCSCEEEEEEEEEEC
T ss_pred EEEEEEeccccceEEEEEEEC
Confidence 998887776666665555433
No 14
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=69.10 E-value=9.6 Score=29.20 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=33.6
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.|+|.||-|+=+.+..+. ++|+.+. ...-|+++++..+.++.
T Consensus 171 ~l~v~NptPyyvtl~~l~----~~g~~~~-----~~~mV~P~s~~~~~l~~ 212 (239)
T 4djm_A 171 RLKGVNPTPFYINLSTLT----VGGKEVK-----EREYIAPFSSREYPLPA 212 (239)
T ss_dssp EEEEECCSSSCBCEEEEE----ETTEECS-----SCCCBCTTCEEEEECCC
T ss_pred EEEEECCCceEEEEEEEE----ECCEecc-----CceeEcCCcceEEEcCC
Confidence 489999999999999864 4787654 35679999999988763
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=61.49 E-value=12 Score=28.22 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=32.1
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.|+|.||-|+=+.+..+. ++|+.+. +..-|+++++..+.++.
T Consensus 154 ~l~v~Nptpy~vtl~~l~----~~g~~~~-----~~~mv~P~s~~~~~l~~ 195 (221)
T 2co7_B 154 KLKVENPTPFYMNLASVT----VGGKPIT-----GLEYVPPFADKTLNMPG 195 (221)
T ss_dssp EEEEEECSSSCBCEEEEE----ETTEECC-----CCCCBCTTEEEEEC---
T ss_pred EEEEECCCCcEEEEEEEe----eCCeecc-----CceeEcCCCceEEecCC
Confidence 499999999999999874 4787643 46789999998888763
No 16
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=61.21 E-value=1.9 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=15.0
Q ss_pred EEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecc
Q 031863 61 SYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMK 95 (151)
Q Consensus 61 ~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~ 95 (151)
-|.+++||.+++ |...--+++|..+...+.+-++
T Consensus 7 vY~iSvNGSPLa-~~~ei~l~vPvG~GesirLLAS 40 (76)
T 2kdd_A 7 IYNISGNGSPLA-DSKEIFLTVPVGGGESLRLLAS 40 (76)
T ss_dssp --------------CCSCEECCCSSSSSCCCEETT
T ss_pred eEEEeecCCcCC-CCCceEEEeecCCCceeeehhh
Confidence 489999999999 5455567888888888877654
No 17
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Probab=61.18 E-value=49 Score=28.68 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=63.6
Q ss_pred CCcceeec-------cccc--cccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeee
Q 031863 21 KPEAEITD-------VDLK--NVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQ 91 (151)
Q Consensus 21 ~P~V~l~~-------v~~~--~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~ 91 (151)
.|++.+.+ +.+. .++...+++.+++.+.|+..-+- -.++.++.-+|..+++... ..++.+.+...+.
T Consensus 148 ~~~~~I~~~~~~~~gv~v~~~~~~~~~a~v~v~~~~~~~~~~~~--~~v~~~l~d~g~~v~~~~~--~~~~~~~~~~~~~ 223 (667)
T 3cmg_A 148 TDETCISPLDYASPGVYLVQEVVSPQEAKVCAKVNLSNRAADGT--AELQVLVTDGTKVICKESR--NVSLKQGADILEQ 223 (667)
T ss_dssp ECSEEECSCSTTSCSEEEEEEEECSSEEEEEEEEEEEECSSSEE--EEEEEEEEETTEEEEEEEE--EEEECTTCEEEEE
T ss_pred ECCEEEeecccCCCceEEecccccCceEEEEEEEEEEcCCCCce--EEEEEEEECCCEEEEEEEE--EEEECCCCceEEE
Confidence 45666654 3333 35556678999999998754321 2345555447888876543 3456666655555
Q ss_pred eecccChhhhhhhhhhhcCCcceeeEEEeeeEE--------eeceeeeeeeecCCcceeec
Q 031863 92 VPMKVPPNILVSLAKDIGADWDIDYEVELGLTI--------DLPIIGNFTIPLSKKGEFKL 144 (151)
Q Consensus 92 lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~~--------~~~~~G~~~ip~~~~G~i~l 144 (151)
+.+.+..- ++|. ..+..-=|+++..+.- ... +|-++|.++..+.+-|
T Consensus 224 ~~~~v~~p---~LWs--g~~~P~LY~l~~~l~~~g~~~D~~~~~-~G~R~i~~~~~~~f~l 278 (667)
T 3cmg_A 224 LPLLIQKP---RLWN--GCEDPFMYQVSISLHKDGKQIDSVTQP-LGLRYYHTDPDKGFFL 278 (667)
T ss_dssp EEEEEESC---CCBC--GGGCBCCEEEEEEEEETTEEEEEEEEE-ECCCCEEEETTTEEEE
T ss_pred EEEEcCCC---eeCC--CCcCceeEEEEEEEEECCEEEEEEEEe-eeeEEEEEeCCCcEEE
Confidence 55554332 2232 1344455777766521 233 5666777765444543
No 18
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=59.86 E-value=11 Score=28.47 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=32.0
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeeccc
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKV 96 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~ 96 (151)
.|+|.||-|+=+.+..+ .++|+.+. ..-|+++++..+.++-.+
T Consensus 149 ~l~v~NptPyyvtl~~l----~~~g~~i~------~~mv~P~s~~~~~l~~~~ 191 (218)
T 4ay0_A 149 KLIAENPSPFYMNIGEL----TFGGKSIP------SHYIPPKSTWAFDLPKGL 191 (218)
T ss_dssp EEEEEECSSSCEEEEEE----EETTEECC------CCEECTTEEEEEEC---C
T ss_pred EEEEECCCCCEEEEEEE----EECCEEcc------CcEECCCCeeEEECCcCC
Confidence 48899999999999765 56888753 357889999888887543
No 19
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Probab=58.18 E-value=16 Score=33.84 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=40.8
Q ss_pred EEeeeCCCC-CccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYS-HSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~-~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.+.|.|-+. ..+.=-.+.|+|..||+.+.+|... +.|+++++..++||.
T Consensus 635 ~~~v~N~~~f~~l~~~~~~~~~~~~g~~~~~g~~~--~~v~p~~~~~~~l~~ 684 (1023)
T 1jz7_A 635 TIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVP--LDVAPQGKQLIELPE 684 (1023)
T ss_dssp EEEEEECCSSCCCTTCEEEEEEEETTEEEEEEEEE--CCCCTTCEEEEECCS
T ss_pred eEEEEeeeEeccCcccEEEEEEEECceEEEeeeEe--eeECCCceEEEEecC
Confidence 589999986 4455457899999999999999986 589999999988884
No 20
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A
Probab=57.67 E-value=20 Score=33.14 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=40.6
Q ss_pred EEeeeCCCCCc-cCeeEEEEEEee-CCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHS-LPICEISYTFKS-AGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~-L~i~~l~y~l~v-nG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.++|.|-+.|. +.=-.+.|++.. ||..+.+|... +.|+++++..++||+
T Consensus 631 ~~~v~N~~~F~~l~~~~~~w~l~~~~G~~~~~g~~~--~~v~p~~~~~~~l~~ 681 (1010)
T 3bga_A 631 KVCIKNWYDFSNLNEYILRWNVKGEDGTVLAEGTKE--VDCEPHATVDVTLGA 681 (1010)
T ss_dssp EEEEEECCSSCCGGGEEEEEEEEETTCCEEEEEEEC--CCCCTTCEEEEECCC
T ss_pred EEEEEeccccCCCcccEEEEEEEEcCceEEEEeEEE--eeeCCCCcEEEEccC
Confidence 58999999653 444467788888 99999999986 589999999999885
No 21
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=51.93 E-value=55 Score=22.52 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=50.4
Q ss_pred hccCCCCcceee--ccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCe----EEeeeecCCCCCccCCCeee
Q 031863 16 MANIEKPEAEIT--DVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGK----VIASGTMADPGSLKGNDKTL 89 (151)
Q Consensus 16 ~~~~~~P~V~l~--~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~----~v~~G~~~~~~~Ipa~g~~~ 89 (151)
+.+--.|.|++. .++++.+...... .-++.|.|--.+|..++-. -..++. ++.+ ..+...+|+++++..
T Consensus 19 ~ENe~~P~i~v~~~~ldFG~v~~~~~~-~~~l~I~Ntg~vpa~F~f~---~~~~~~~~~~~wl~-v~P~~G~L~Pge~~~ 93 (140)
T 3qbt_B 19 MENDFLPSLELSRREFVFENVKFRQLQ-KEKFQISNNGQVPCHFSFI---PKLNDSQYCKPWLR-AEPFEGYLEPNETVD 93 (140)
T ss_dssp HHHHTSCCEEESCCEEEEEEECBTCCE-EEEEEEEECSSSCEEEEEE---CCTTCSSSSCTTEE-EESCEEEECTTCEEE
T ss_pred HhhccCCceEeeeeeEEeeeceeeeee-eeEEEEEcCCccceEEEEe---cCCCchhhhhHhhh-cCCcccccCCCCeeE
Confidence 334445766663 4555665555444 6689999999998875433 222221 2222 235677999999999
Q ss_pred eeeecccCh
Q 031863 90 LQVPMKVPP 98 (151)
Q Consensus 90 v~lpv~~~~ 98 (151)
+.|.+.++-
T Consensus 94 I~v~~~v~~ 102 (140)
T 3qbt_B 94 ISLDVYVSK 102 (140)
T ss_dssp EEEEECBCH
T ss_pred EEEEEEEcc
Confidence 999999886
No 22
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=51.87 E-value=59 Score=28.52 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCcceeecc-------ccc--cccccceEEeeEEeeeCCCCCccCeeEEEEEEe-eCCeEEeeeecCCCCCccCCCeeee
Q 031863 21 KPEAEITDV-------DLK--NVSREAVEYDAKVSVDNPYSHSLPICEISYTFK-SAGKVIASGTMADPGSLKGNDKTLL 90 (151)
Q Consensus 21 ~P~V~l~~v-------~~~--~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-vnG~~v~~G~~~~~~~Ipa~g~~~v 90 (151)
.|++.+.++ .+. .++...+++.+++.|.|+..-+-.+ .+++++. -+|..+++... .+++.+.++..+
T Consensus 160 ~~~~~I~~~~~~~~gv~v~~~~~~~~~a~v~v~~~v~n~~~~~~~~-~v~~~l~d~~g~~v~~~~~--~~~~~~~~~~~~ 236 (692)
T 3fn9_A 160 TEQNNITVTDCASPGVYITQKDVSKKSADITVKVKLDNAGLQPAAV-TLENTIYTQEGQKVGTHSR--SFDLSPQGTQTY 236 (692)
T ss_dssp ECSEEECSCSTTCCSEEEEEESCSSSEEEEEEEEEEEECSSSCEEE-EEEEEEECTTSCEEEEEEE--EEEECSSSCEEE
T ss_pred ECCeEEecccccCCcEEEEeccccCCEEEEEEEEEEEeCCCCceeE-EEEEEEECCCCCEEEEEEe--EEEecCCCeEEE
Confidence 466676652 232 4566778899999999986433211 2334443 25667766532 344566666666
Q ss_pred eeecccChhhhhhhhhhhcCCcceeeEEEeeeE--------EeeceeeeeeeecCCcceeec
Q 031863 91 QVPMKVPPNILVSLAKDIGADWDIDYEVELGLT--------IDLPIIGNFTIPLSKKGEFKL 144 (151)
Q Consensus 91 ~lpv~~~~~~L~~~~~~l~~~~~i~Y~l~g~l~--------~~~~~~G~~~ip~~~~G~i~l 144 (151)
.+.+.+..- ++|. ..+..-=|+++..+. .... +|-++|.++..+.+-|
T Consensus 237 ~~~~~v~~p---~LWs--g~e~P~LY~l~v~l~~~g~~~D~~~~~-~GfR~ie~~~~~~f~l 292 (692)
T 3fn9_A 237 LSTFKLKNP---HLWQ--GRKDPYLYKVVCRLMADGKVIDEVVQP-LGVRKYEIVAGKGFFL 292 (692)
T ss_dssp EEEEEEESC---CCCC--TTSCCCCEEEEEEEESSSSEEEEEEEE-ECCCCEEEETTTEEEE
T ss_pred EEEEEcCCc---eeCC--CCcCcccEEEEEEEEECCEEEEEEEEE-ecceEEEEECCCceEE
Confidence 665555432 2232 134445577776652 1223 5666677764433433
No 23
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=49.41 E-value=17 Score=24.25 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred ccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCC---eEEeeeecCCCCCccCCCeeeeeeecccChhhh
Q 031863 34 VSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAG---KVIASGTMADPGSLKGNDKTLLQVPMKVPPNIL 101 (151)
Q Consensus 34 ~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG---~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~~~L 101 (151)
.+....+=.-+++|.|--..+ ..|.+.+.| .++.. .+.+.++|.....+++-+++....+
T Consensus 26 ~~dG~I~N~Ytlki~Nkt~~~-----~~~~l~v~g~~~l~~~g---~~~i~v~~g~~~~~~v~v~~~~~~~ 88 (118)
T 2r39_A 26 NSAGEVENTYTLKVINKTQQV-----QEYNLDVKGLNDVSWYG---KQTIQVEPGEVLNLPMSLGADPDKL 88 (118)
T ss_dssp --CCSEEEEEEEEEEECSSSC-----EEEEEEEESCSSCEEES---CCEEEECTTCEEEEEEEEEECGGGC
T ss_pred cCCCeEEEEEEEEEEECCCCC-----EEEEEEEeCCcccEEeC---CCcEEECCCCEEEEEEEEEEChHHc
Confidence 344556777889999988766 456777655 33332 3358999999999999988876654
No 24
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=47.92 E-value=61 Score=21.87 Aligned_cols=57 Identities=5% Similarity=-0.019 Sum_probs=35.9
Q ss_pred eEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccC
Q 031863 39 VEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVP 97 (151)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~ 97 (151)
..+.+.+...|-.+. +|.++.+.+-|--..=.+-......+|++++...++=.+.+.
T Consensus 29 ~~~~i~~~~~N~s~~--~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~ 85 (122)
T 3zy7_A 29 SVTVITIQASNSTEL--DMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVL 85 (122)
T ss_dssp CEEEEEEEEEECSSS--CBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEE
T ss_pred CeEEEEEEEEECCCC--ccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEE
Confidence 346778888887654 699999999885533333334445688886555454444443
No 25
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=46.06 E-value=17 Score=24.49 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=40.3
Q ss_pred ccceEEeeEEeeeCCCCCccCeeEEEEEEe---eCCeEEeeeecC-CCCCccCCCeeeeeee
Q 031863 36 REAVEYDAKVSVDNPYSHSLPICEISYTFK---SAGKVIASGTMA-DPGSLKGNDKTLLQVP 93 (151)
Q Consensus 36 ~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~---vnG~~v~~G~~~-~~~~Ipa~g~~~v~lp 93 (151)
..+-.+.+...+.|--..++. +.|.++ -+|..+...... +.+.|+++++.++...
T Consensus 35 ~~~g~l~~~~~l~N~~~~~~~---l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~v 93 (112)
T 3o0l_A 35 AEAGFLRARGTIISKSPKDQR---LQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTAL 93 (112)
T ss_dssp CGGGCEEEEEEEEECSSSCEE---EEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEE
T ss_pred ecCCeEEEEEEEEeCCCCCEE---EEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEE
Confidence 355667788888888888775 788888 688888755345 6677888887776654
No 26
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=43.21 E-value=16 Score=27.19 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=30.8
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.|+|.||-|+=+.+..+. ++|+.+. ..-|+++++..+.++.
T Consensus 139 ~l~v~Nptpy~vtl~~l~----~~g~~~~------~~mv~P~s~~~~~l~~ 179 (206)
T 1l4i_A 139 GLTLFNPTPYYLTVTDLK----AGNKSLE------NTMVPPQGKVTVNIPG 179 (206)
T ss_dssp -CEEECCSSSCEEEEEEE----ETTEECC------CEEECTTCEEECCC--
T ss_pred EEEEECCCCceEEEEEEe----eCCcEee------eeEEcCCCcceeeccC
Confidence 489999999999999874 4787653 1578889888887763
No 27
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=42.79 E-value=9.3 Score=28.54 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=21.3
Q ss_pred HHHHHhhhHHHHhcc-CCCCcceeeccccccccccceEEeeEEeeeCCCCCccCeeEEE
Q 031863 4 FLDKAKNFVAEKMAN-IEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEIS 61 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~P~V~l~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~ 61 (151)
-++++|+|+.+.+.- ++.=++++.+-.|+.+.+.... +.+.|.|.-.|.||+..|+
T Consensus 106 D~~~L~~~fk~~f~i~Le~kEls~kGwNWG~~~f~g~~--L~F~v~~KpaFEIPls~VS 162 (191)
T 3f5r_A 106 DYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNE--MVFALNGKPTFEIPYARIN 162 (191)
T ss_dssp GHHHHHHHHHHHHCCCCEECSSTTTTC--------------------------------
T ss_pred HHHHHHHHHHHHcCCCceeeeeecccccceecEEcCCE--EEEEeCCeeEEEecHHHhh
Confidence 367889999887654 6888999999999999999984 5567889999999988873
No 28
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=40.03 E-value=16 Score=27.12 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=31.8
Q ss_pred EEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 44 KVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
.|+|.||-|+=+.+..+. ++|+.+. ..-|+++++..+.++.
T Consensus 139 ~l~v~Nptpy~vtl~~l~----~~g~~~~------~~mv~P~s~~~~~l~~ 179 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELN----AGTRVLE------NALVPPMGESTVKLPS 179 (205)
T ss_dssp EEEEEECSSSCEEEEEEE----SSSSBCC------CEEECTTEEEEEECCS
T ss_pred EEEEECCCCCEEEEEEEE----eCCcccc------cceEcCCCcceeecCC
Confidence 489999999999998864 4776541 2488899998888763
No 29
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=39.44 E-value=77 Score=21.38 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHhhhHHHHhccCCCCcceeecccccccc--ccceEEeeEEeeeCCCCCccCeeEEEEEEee
Q 031863 7 KAKNFVAEKMANIEKPEAEITDVDLKNVS--REAVEYDAKVSVDNPYSHSLPICEISYTFKS 66 (151)
Q Consensus 7 ~~~~~~~~~~~~~~~P~V~l~~v~~~~~~--~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~v 66 (151)
.++.-|.+.+..+| |++++.++++..-. .....+.++.++..-| .+ ..+.|.+++
T Consensus 74 ~i~~~i~~al~~~E-PRi~~~~V~v~~~~~~~~~l~i~I~~~~~~~~-~~---~~l~~~~~l 130 (134)
T 2ia7_A 74 LIENEVKEALILWE-PRIELLSVTASPREAAEGRLLIDIEYRVRSTN-TR---FNLVYPFYL 130 (134)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEECTTGGGTEEEEEEEEEETTTT-EE---EEEEEEEEC
T ss_pred HHHHHHHHHHHHhC-CCeEEEEEEEeecCCCCCEEEEEEEEEEecCC-CE---EEEEEEEEe
Confidence 44555566666554 89999999887643 3455666666654322 21 356777776
No 30
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=39.30 E-value=9.6 Score=20.50 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=10.1
Q ss_pred hhHHHHHhhhHHH
Q 031863 2 AQFLDKAKNFVAE 14 (151)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (151)
.++|+|||||..+
T Consensus 20 kesL~Kvk~lF~E 32 (35)
T 1n0w_B 20 KESLDKVKNLFDE 32 (35)
T ss_dssp HHHHHHTTTTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 4689999998543
No 31
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=38.23 E-value=98 Score=21.43 Aligned_cols=58 Identities=7% Similarity=0.010 Sum_probs=37.8
Q ss_pred eEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccCh
Q 031863 39 VEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
....+.+...|-++ -+|.++.+++-|----=.+-......+|++++...++=.+.+..
T Consensus 47 ~~~~i~~~f~N~s~--~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n 104 (140)
T 1gyu_A 47 SVTVITIQASNSTE--LDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLN 104 (140)
T ss_dssp TEEEEEEEEEECSS--SCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEEC
T ss_pred CEEEEEEEEEECCC--CccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeC
Confidence 34677778888554 66999999998855333333445567898877765555554433
No 32
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=36.63 E-value=19 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.540 Sum_probs=15.4
Q ss_pred hhHHHHHhhhHHHHhccC
Q 031863 2 AQFLDKAKNFVAEKMANI 19 (151)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (151)
..|.+..|+|+.|++.+-
T Consensus 40 eeFW~DL~gFL~qRlkDe 57 (75)
T 2lo0_A 40 EAFWDDLQGFLEQRLKDY 57 (75)
T ss_dssp HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhcCCH
Confidence 369999999999999864
No 33
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.35 E-value=1.1e+02 Score=20.82 Aligned_cols=54 Identities=2% Similarity=-0.116 Sum_probs=33.5
Q ss_pred eEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeec
Q 031863 39 VEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPM 94 (151)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv 94 (151)
....+.+...|-++ -+|.++.+++-|--..=.+-.-.....|++++...++=.+
T Consensus 38 ~~~~i~~~~~N~s~--~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~ 91 (131)
T 2e9g_A 38 ALLLITITATNFSE--GDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLF 91 (131)
T ss_dssp TEEEEEEEEEECSS--SCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCE
T ss_pred CeEEEEEEEEECCC--CccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEE
Confidence 34677778888654 5699999998875433233333445678887765444333
No 34
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=33.72 E-value=32 Score=22.49 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.1
Q ss_pred EeeEEeeeCCCCCccCeeEEEEEEeeCCeEEe
Q 031863 41 YDAKVSVDNPYSHSLPICEISYTFKSAGKVIA 72 (151)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~ 72 (151)
..+.+.| .+++-...+|.|++||+.+-
T Consensus 61 ~k~~I~I-----~a~~~~~y~YtL~VngKslk 87 (90)
T 3mx7_A 61 TKATINI-----DAISGFAYEYTLEINGKSLK 87 (90)
T ss_dssp EEEEEEE-----EEETTTEEEEEEEETTEEEE
T ss_pred eEEEEEE-----EecCCccEEEEEEECCEeHH
Confidence 4555555 45666789999999999874
No 35
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=29.71 E-value=88 Score=21.34 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=41.0
Q ss_pred cceEEeeEEeeeCCCCCccCeeEEEEEEeeCC-----eEEeeeecCCCCCccCCCeeeeeeecccC
Q 031863 37 EAVEYDAKVSVDNPYSHSLPICEISYTFKSAG-----KVIASGTMADPGSLKGNDKTLLQVPMKVP 97 (151)
Q Consensus 37 ~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG-----~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~ 97 (151)
.+..+.+...|.|=-..+-+- ..-.+|++| ..++.-. ...|++++++++.+++++.
T Consensus 14 ~g~~vTvsatVkN~Gt~~s~a--~~V~~yl~~p~~gg~~vgt~t---v~~LaaG~s~t~~v~~~~~ 74 (122)
T 2kut_A 14 EGEEITVSARVTNRGAAEAHN--VPVAVYLGNPAQGGVEIGRDT---ISRIPVGGTGLARVQWKAT 74 (122)
T ss_dssp TTCEEEEEEEEECCSSSCBCC--CCEEECSSCTTTCCCCCBCCC---CSCBCTTCEEECCEEEECC
T ss_pred CCCeEEEEEEEEeCCCcccCc--EEEEEEeCCCccCCeEEeeEE---ccccCCCCeEEEEEEEecC
Confidence 456777888999998887774 555778888 5555432 3579999999977776655
No 36
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=29.35 E-value=1e+02 Score=23.64 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=39.5
Q ss_pred cceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeec-CCCCCccCCCeeeeeeecccCh
Q 031863 37 EAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTM-ADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 37 ~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~-~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
.+-.+.+++++.|-... +++++...+.-|--=++-+.- +-+..|+++.+.++.||+..+-
T Consensus 53 ~~g~i~l~l~~~N~s~~--~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~~~ 113 (258)
T 2g30_A 53 RQGHIYMEMNFTNKALQ--HMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLG 113 (258)
T ss_dssp ETTEEEEEEEEEECSSS--CBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEEEEESCS
T ss_pred eCCEEEEEEEEecCCcc--ceeeeEEEEcccccCcccCccccCCCccCCCCcEEEEEeeecCC
Confidence 35566688888887665 667765565555433333322 2235799999999999988754
No 37
>2jwy_A Uncharacterized lipoprotein YAJI; structural genomics, GFT northeast S genomics consortium, NESG, membrane, palmitate, PSI-2; NMR {Escherichia coli}
Probab=27.86 E-value=1.2e+02 Score=22.04 Aligned_cols=51 Identities=8% Similarity=0.045 Sum_probs=30.1
Q ss_pred EeeEEeeeCCCCCccCeeEEEEEEe------eCCeEEeeeecCCCCCc----cCCCeeeeeee
Q 031863 41 YDAKVSVDNPYSHSLPICEISYTFK------SAGKVIASGTMADPGSL----KGNDKTLLQVP 93 (151)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~~l~y~l~------vnG~~v~~G~~~~~~~I----pa~g~~~v~lp 93 (151)
-.+.|+|++.+.-+|| .+.-.|+ ..|++......++.+.+ .+.++..|++.
T Consensus 78 trA~L~I~~~~~~~LP--Af~a~veWGqld~~tg~pl~~~~qsQ~i~~~~sllp~s~~~i~lr 138 (168)
T 2jwy_A 78 TTLTLRIQGESNDPLP--AFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQ 138 (168)
T ss_dssp EEEEEEEEESSSSCCC--CEEEEEEEEEECSCSSSCCEEEEEEEEEEECCCCSSSCEEEEEEE
T ss_pred cEEEEEEeCCCCCCCC--cceeEEEeccccCcCCCcccccccceeeecCCCcCCCCcceEEEE
Confidence 3456777888888888 5555555 35566666666554443 34444444444
No 38
>2fsd_A RBP, putative baseplate protein; lactococcus lactis, receptor binding protein, head domain, viral protein; 2.30A {Unidentified phage}
Probab=24.86 E-value=78 Score=21.64 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.1
Q ss_pred EEeeeCCCCCccCeeEEEEEEee
Q 031863 44 KVSVDNPYSHSLPICEISYTFKS 66 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~v 66 (151)
.+.|-|||+..+.=+-+.|.+.+
T Consensus 117 ~I~iGNPN~TsM~GK~I~Fsi~~ 139 (142)
T 2fsd_A 117 GIAVGNPNNTSMNGKTISFALSA 139 (142)
T ss_dssp EEEEECCSSSCBCSCEEEEEEEE
T ss_pred cccccCCCCccccCcEEEEEEcc
Confidence 57899999999988888887653
No 39
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=24.19 E-value=1e+02 Score=25.70 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=34.8
Q ss_pred eEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeecccCh
Q 031863 39 VEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
.+..++++|.|+. ..++.+.++.+++-..--..+ ....+++..+.++++.+++.-
T Consensus 373 ~~~~~~~~vtn~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~t~~~~vt~~~ 427 (601)
T 1w8o_A 373 QQVTVPVAVTNQS--GIAVPKPSLQLDASPDWQVQG---SVEPLMPGRQAKGQVTITVPA 427 (601)
T ss_dssp CEEEEEEEEECCS--SSCBSSCEEEEECCTTSEEEE---EECCBCTTCEEEEEEEEECCT
T ss_pred ceeEEEEEEECCC--ceeccCceEEEecCCCcEEec---cccccCCCCceEEEEEEecCC
Confidence 4788999999975 455566777777644333333 235666666666766666653
No 40
>2wq4_A Lectin; LUNG, pathogen, infection, sugar binding protein; HET: SFU; 1.42A {Burkholderia cenocepacia}
Probab=24.04 E-value=1.8e+02 Score=20.03 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=55.5
Q ss_pred ccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCC-eeeeeeecccChhh
Q 031863 30 DLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGND-KTLLQVPMKVPPNI 100 (151)
Q Consensus 30 ~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g-~~~v~lpv~~~~~~ 100 (151)
++.+.+...-.+.+.|.|--|+..+=.+.|+.|.+--|--.++.|-..-+-.||.+. ...+++..+.+...
T Consensus 28 dv~k~~~~~~~~~i~lniptpyasgnnfpg~~fai~t~qg~~a~g~ftysskipe~sgrmpftlva~~~~~s 99 (156)
T 2wq4_A 28 DVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGS 99 (156)
T ss_dssp CHHHHTCCSSEEEEEEEECSCEEECSSSCEEEEEEEETTEEEEEEEEECSSSSCSSCCCCCEEEEEEEEGGG
T ss_pred EhhhhcCCCceEEEEEcCCCccccCCCCCCeeEEEEecCcEEeecceeecccCCcccCccceEEEEEEEecC
Confidence 344444445558899999888888889999999999998889999999888898764 46677777776643
No 41
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=23.32 E-value=70 Score=21.22 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=29.2
Q ss_pred EEeeeCCCCCccCeeEEEEEEe---eCCeEEeeee-c-CCCCCccCCCeeeeee
Q 031863 44 KVSVDNPYSHSLPICEISYTFK---SAGKVIASGT-M-ADPGSLKGNDKTLLQV 92 (151)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~---vnG~~v~~G~-~-~~~~~Ipa~g~~~v~l 92 (151)
.+.+.|-|..+. .+.|.++ -+|..+.... . =+.+.|+++++.++.-
T Consensus 39 ~v~v~~~s~~~~---~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~ 89 (107)
T 4gio_A 39 EFEVILRSTFAK---DVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRK 89 (107)
T ss_dssp EEEEEECCSSCE---EEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEE
T ss_pred EEEEEecCCCce---EEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEE
Confidence 455556666654 5789988 5788775532 2 2466777777766554
No 42
>3nqn_A Uncharacterized protein; protein with unknown function, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.88A {Deinococcus radiodurans}
Probab=23.01 E-value=52 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEeeeEEeeceeeeeeeecCC
Q 031863 117 EVELGLTIDLPIIGNFTIPLSK 138 (151)
Q Consensus 117 ~l~g~l~~~~~~~G~~~ip~~~ 138 (151)
+++|.+....|++|.+.+||..
T Consensus 47 ~l~G~Lr~~~PllGEv~lPF~S 68 (158)
T 3nqn_A 47 QVWGELLVTVPLLGEVDLPFRS 68 (158)
T ss_dssp EEEEEEEEEETTTEEEEEEEEE
T ss_pred eeEEEEEecccccceeecchhe
Confidence 6899999999999999999985
No 43
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=22.43 E-value=43 Score=29.24 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.1
Q ss_pred cCeeEEEEEEeeCCeEEeeeecC
Q 031863 55 LPICEISYTFKSAGKVIASGTMA 77 (151)
Q Consensus 55 L~i~~l~y~l~vnG~~v~~G~~~ 77 (151)
+.+.+-.||+.+||..++.|...
T Consensus 481 ~~~~a~~ydlv~~g~El~~gs~r 503 (617)
T 4ah6_A 481 KKARSQHYDLVLNGNEIGGGSIR 503 (617)
T ss_dssp TSSBCCCEEEEETTEEEEEEECC
T ss_pred hhhhhceEEEEECCEEEeeeeEE
Confidence 46789999999999999999665
No 44
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=22.22 E-value=1.2e+02 Score=20.00 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=23.0
Q ss_pred EeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecC
Q 031863 41 YDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMA 77 (151)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~ 77 (151)
+.+.||++|++. .++.|+|++.. |..=+.|...
T Consensus 3 v~LvLRlRn~~r---ELnDIrFeF~~-g~DTaegiA~ 35 (96)
T 2v3s_A 3 ISLVLRLRNSKK---ELNDIRFEFTP-GRDTAEGVSQ 35 (96)
T ss_dssp EEEEEEEECTTS---CEEEEEEEECT-TTCCHHHHHH
T ss_pred eeEEEEeccccc---hhcceEEEeec-CCCcHHHHHH
Confidence 567899999996 78899888654 3444444433
No 45
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=21.74 E-value=1.7e+02 Score=21.35 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCCccee-eccccccccccceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEeeeecCCCCCccCCCeeeeeeeccc
Q 031863 20 EKPEAEI-TDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKV 96 (151)
Q Consensus 20 ~~P~V~l-~~v~~~~~~~~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~~G~~~~~~~Ipa~g~~~v~lpv~~ 96 (151)
..|++++ ..++++.+. +......+.+.|--..||.|..+.-. .|--.++ .. ...|+++.+..+++....
T Consensus 116 ~~~~i~~~~~~dfG~i~--g~~~~~~f~i~N~G~~pL~I~~v~~s---cgct~~~--~~-~~~i~PGe~~~i~v~~~~ 185 (220)
T 2qsv_A 116 QTGVMELSTYLDMGQLD--GETTKAAIEIRNVGAGPLRLHSVTTR---NPALTAV--PD-RTEIKPGGSTLLRIAVDP 185 (220)
T ss_dssp GCCCEECCCEEEEEECT--TSCEEEEEEEEECSSSCEEEEEEEEC---STTEEEE--ES-CSEECTTCEEEEEEEECH
T ss_pred cCCEEEEEeEEeeeccC--CCeEEEEEEEEECCCCCEEEEEEEeC---CCCEeee--cC-CccCCCCCEEEEEEEEec
Confidence 4565555 688888888 57888899999999999999988543 4433333 22 346888888776666543
No 46
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=21.09 E-value=3.6e+02 Score=22.35 Aligned_cols=83 Identities=19% Similarity=0.107 Sum_probs=54.6
Q ss_pred cceEEeeEEeeeCCCCCccCeeEEEEEEeeCCeEEe------------------eeecCCCCCccCCCeeeeeeecccCh
Q 031863 37 EAVEYDAKVSVDNPYSHSLPICEISYTFKSAGKVIA------------------SGTMADPGSLKGNDKTLLQVPMKVPP 98 (151)
Q Consensus 37 ~~~~~~~~l~V~NPN~~~L~i~~l~y~l~vnG~~v~------------------~G~~~~~~~Ipa~g~~~v~lpv~~~~ 98 (151)
.+-++.++++|.|--+-|+.+..+.. .|.++. .|.+++. .|.+..+.++++.++=..
T Consensus 296 pgR~l~~~~~VtN~g~~pvrlgeF~t----A~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~-pI~PGETrt~~V~a~da~ 370 (419)
T 3rfr_A 296 PGRELTINVKVKNGTSQPVRLGEYTA----AGLRFLNPTVFTQKPDFPDYLLADRGLSNDD-VIAPGESKEIVVKIQDAR 370 (419)
T ss_dssp SSSEEEEEEEEECCSSSCBEEEEEEC----SSCEEECTTTCSSCCCCCTTTEESCCCCCCC-CBCTTCEEEEEEEEECHH
T ss_pred CCcEEEEEEEEecCCCCceEEeeEEE----ccEEEeCcccccCCCCCchhhhhccCCCCCC-CcCCCcceEEEEEeehHH
Confidence 46789999999999999999987643 233332 2555445 899999999998887665
Q ss_pred hhhhhhhhhhcCCcceeeEEEeeeEEeec
Q 031863 99 NILVSLAKDIGADWDIDYEVELGLTIDLP 127 (151)
Q Consensus 99 ~~L~~~~~~l~~~~~i~Y~l~g~l~~~~~ 127 (151)
-+..++..-+.. .+.|+-|-+.+--+
T Consensus 371 WeveRL~~l~~D---~dSrfgGLLfF~d~ 396 (419)
T 3rfr_A 371 WDIERLSDLAYD---TDSQVGGLLFFFTP 396 (419)
T ss_dssp HHHTTGGGGGGS---SSCEEEEEEEEECS
T ss_pred HHHHHHhhhhcC---chhheeEEEEEEcC
Confidence 544444332222 23466666655444
Done!