BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031864
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
Length = 174
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 105/146 (71%), Gaps = 7/146 (4%)
Query: 13 TLVDAKAP-RQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEA-- 69
T++D++AP + A AS S +LP P+ S TR KAT YCRK+ RNV+ AT E
Sbjct: 11 TIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGE 70
Query: 70 ----PAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLV 125
E TELPEIVKT QEAW+KV+DKYA+ SLA +A+WGS GMISAIDRLPLV
Sbjct: 71 APATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLV 130
Query: 126 PGVLELVGIGYTGWFAYKNLVFKPDR 151
PGVLELVGIGYTGWF YKNLVFKPDR
Sbjct: 131 PGVLELVGIGYTGWFTYKNLVFKPDR 156
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
thaliana GN=At4g01150 PE=1 SV=1
Length = 164
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 5 ALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPV--PSQTRPWKATTYCRKMARNVM 62
A+S+++SS++ PR A ST+C ++P LPP S T P K + + V
Sbjct: 2 AISVAASSSMA-VMVPRVPA-VSTRCSAVPYLPPRSFGRSSFTVPLKLVS--GNGLQKVE 57
Query: 63 AMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRL 122
+ T + E ++ + E++ ++E WD +E+K V +AVW S+ ++ AI+ +
Sbjct: 58 LLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117
Query: 123 PLVPGVLELVGIGYTGWFAYKNLVFKPDR 151
PL+P V+ELVG+GYTGWF Y+ L+FK R
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFKSSR 146
>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=valS PE=3 SV=1
Length = 1014
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 50 ATTYCRKMAR-NVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLA-VTVAI 107
+Y + +A+ + +A G+ P+ V + + +KT+ + L + VA+
Sbjct: 812 GQSYIKDLAKVETLTIAAGQQPSTVTKKKPQKGLKTI---------GLVIAGLVFLRVAL 862
Query: 108 AVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151
AV +D +P + E+VG+GY+ WF +NL+ P R
Sbjct: 863 AV------ADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPAR 900
>sp|Q8MVR1|GBPC_DICDI Cyclic GMP-binding protein C OS=Dictyostelium discoideum GN=gbpC PE=1
SV=1
Length = 2631
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 10/45 (22%)
Query: 3 SSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRP 47
SS +S+S+S+T PAS + ++ PTLP PP P Q+ P
Sbjct: 2189 SSIMSLSNSNT----------PPASPRVMTTPTLPSPPAPLQSPP 2223
>sp|Q14766|LTBP1_HUMAN Latent-transforming growth factor beta-binding protein 1 OS=Homo
sapiens GN=LTBP1 PE=1 SV=4
Length = 1721
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 17 AKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAAT 76
K P P +TQ V+ T PPP+P++ P +A T+ R+ V AP E
Sbjct: 751 GKGPVFVKPKNTQPVAKST-HPPPLPAKEEPVEALTFSREHGPGVAEPEVATAPPE---K 806
Query: 77 ELPEI 81
E+P +
Sbjct: 807 EIPSL 811
>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=gltX PE=3 SV=1
Length = 881
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 115 MISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151
+I A+D +P++ + EL+G+ Y WF Y+ L+ + +R
Sbjct: 826 VIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNR 862
>sp|Q54DV3|Y2016_DICDI von Willebrand factor A domain-containing protein DDB_G0292016
OS=Dictyostelium discoideum GN=DDB_G0292016 PE=4 SV=1
Length = 918
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 6 LSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKAT-------------- 51
L + S + +++P S P +T +S P PSQ + K+T
Sbjct: 772 LKVKPSKVPLPSRSPSVSKPTTTSLLSPSPKSAPSAPSQQKSVKSTGDLLIDLLKIQKSN 831
Query: 52 TYCRKMARNVMAMATGEAPAEVAATELPEIVKTV 85
K + + + + T +APAE++ TEL +I T+
Sbjct: 832 GSWTKSSIDQLKIPTDKAPAELSTTELNDIWVTI 865
>sp|A1D3C5|RSP5_NEOFI Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=hulA PE=3 SV=1
Length = 816
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 4 SALSISSSSTLVDAKAPRQSAPAST------QCVSLPTLPPPPVPSQTRP 47
S + S+SS LV AP S PA++ S P+L P VPS TRP
Sbjct: 149 SHVQSSTSSGLVPQVAPSSSHPAASGAAPVDPSASNPSLNPQRVPSTTRP 198
>sp|Q4WTF3|RSP5_ASPFU Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=hulA PE=3 SV=2
Length = 813
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 4 SALSISSSSTLVDAKAPRQSAPAST------QCVSLPTLPPPPVPSQTRP 47
S + S+SS LV AP S PA++ S P+L P VPS TRP
Sbjct: 146 SHVQSSTSSGLVPQVAPSSSHPAASGTAPVDPSASNPSLNPQRVPSTTRP 195
>sp|B0XQ72|RSP5_ASPFC Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=hulA PE=3
SV=2
Length = 813
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 4 SALSISSSSTLVDAKAPRQSAPAST------QCVSLPTLPPPPVPSQTRP 47
S + S+SS LV AP S PA++ S P+L P VPS TRP
Sbjct: 146 SHVQSSTSSGLVPQVAPSSSHPAASGTAPVDPSASNPSLNPQRVPSTTRP 195
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 65 ATGEAPAEVAATELPEIVKTVQEAWDKV 92
TG AP V+ T +P ++K +Q+ WD V
Sbjct: 59 GTGSAPRNVSGTSIPSLLKMLQDEWDTV 86
>sp|Q92NL6|MURE_RHIME UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Rhizobium meliloti (strain 1021) GN=murE PE=3
SV=1
Length = 486
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 105 VAIAVWGSTGM-----ISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPD 150
VA + STG+ SA++RL G LELVG G AY + KPD
Sbjct: 308 VAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAYVDYAHKPD 358
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 49 KATTYCRKMARNVMAMA-TGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAI 107
+ CR R V+ MA G AP + + QEA DK E++ L +
Sbjct: 92 RVVNMCR--PRKVLMMAIDGVAPRAKMNQQRSRRFRAAQEAADKEEERREAIKLFEAMGH 149
Query: 108 AVWGSTGMISAIDRLPLVPG--VLELVGIGYTGWFAYK 143
AV T + D + PG ++L+ I W ++K
Sbjct: 150 AVSEETANHKSWDTNAITPGTPFMDLLSISLKYWVSHK 187
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 49 KATTYCRKMARNVMAMA-TGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAI 107
+ CR R V+ MA G AP + + QEA DK E++ L +
Sbjct: 92 RVVNMCR--PRKVLMMAIDGVAPRAKMNQQRSRRFRAAQEAADKEEERREAIKLFEAMGH 149
Query: 108 AVWGSTGMISAIDRLPLVPG--VLELVGIGYTGWFAYK 143
AV T + D + PG ++L+ I W ++K
Sbjct: 150 AVSEETANHKSWDTNAITPGTPFMDLLSISLKYWVSHK 187
>sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 2
GN=gag-pro-pol PE=1 SV=4
Length = 1461
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 20 PRQSAPASTQCVSLPTLPPPPVPSQTRPWK 49
P P +TQC P L PP PS RPW+
Sbjct: 125 PPYVEPTTTQC--FPILHPPGAPSAHRPWQ 152
>sp|P03353|PRO_HTLV2 Gag-Pro polyprotein OS=Human T-cell leukemia virus 2 GN=gag-pro
PE=1 SV=3
Length = 602
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 20 PRQSAPASTQCVSLPTLPPPPVPSQTRPWK 49
P P +TQC P L PP PS RPW+
Sbjct: 125 PPYVEPTTTQC--FPILHPPGAPSAHRPWQ 152
>sp|A6Q2B4|CH60_NITSB 60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL
PE=3 SV=1
Length = 547
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 10 SSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEA 69
++T+V K + + A + + + T + ++A+ +A G A
Sbjct: 329 ENTTIVGGKGDKAAVEARIKEIK------AQIEQTTSEYDKEKLQERLAK----LAGGVA 378
Query: 70 PAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPL 124
+V A E+ +E D+V+D A T AV I + G T ++ A +++ L
Sbjct: 379 VIKVGAATETEM----KEKKDRVDDALAATKAAVEEGIVIGGGTALVRAANKVNL 429
>sp|Q7V5V5|MURD_PROMM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9313) GN=murD PE=3 SV=1
Length = 460
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 8 ISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPV---PSQTRPWKATTYCRKMARNVMAM 64
I S D+KA A CV L +PPP V QT+ A+ + +++ +N A+
Sbjct: 325 IQQMSVYNDSKATNYDAA----CVGLKAVPPPAVVLAGGQTKQGDASGWLKQLDQNACAV 380
Query: 65 ATGEAPAEVAATELPEIVKT 84
A A+EL E++KT
Sbjct: 381 ILFGA----GASELQELIKT 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.127 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,025,436
Number of Sequences: 539616
Number of extensions: 1991828
Number of successful extensions: 13287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 13115
Number of HSP's gapped (non-prelim): 203
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)