Query 031864
Match_columns 151
No_of_seqs 132 out of 170
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 3.8E-58 8.2E-63 367.0 13.3 149 1-151 1-149 (167)
2 PF14159 CAAD: CAAD domains of 99.9 7.2E-27 1.6E-31 170.0 5.6 71 81-151 4-74 (90)
3 PF14159 CAAD: CAAD domains of 89.8 0.7 1.5E-05 33.8 4.5 45 82-126 1-46 (90)
4 PF01810 LysE: LysE type trans 73.9 5.3 0.00012 30.6 3.9 35 115-149 47-82 (191)
5 PRK09304 arginine exporter pro 71.5 4.3 9.4E-05 32.3 3.0 47 99-145 39-88 (207)
6 PF11351 DUF3154: Protein of u 70.6 12 0.00027 28.4 5.2 24 122-147 95-118 (123)
7 PF08606 Prp19: Prp19/Pso4-lik 69.2 4.5 9.9E-05 29.0 2.4 19 74-92 2-20 (70)
8 PRK10958 leucine export protei 65.1 15 0.00032 29.5 4.9 33 113-145 63-95 (212)
9 PRK10323 cysteine/O-acetylseri 65.1 7.8 0.00017 30.6 3.3 50 97-146 42-92 (195)
10 PRK10520 rhtB homoserine/homos 62.6 8.3 0.00018 30.4 3.0 35 113-147 59-93 (205)
11 TIGR00948 2a75 L-lysine export 60.7 11 0.00024 28.9 3.4 34 113-146 42-75 (177)
12 TIGR00949 2A76 The Resistance 60.6 10 0.00022 29.1 3.1 34 113-146 41-74 (185)
13 PRK10229 threonine efflux syst 60.3 18 0.00039 28.4 4.5 48 99-146 41-91 (206)
14 PF13124 DUF3963: Protein of u 60.2 23 0.0005 22.9 4.1 30 79-111 10-39 (40)
15 PRK07193 fliF flagellar MS-rin 57.2 21 0.00045 33.8 5.0 50 77-126 4-58 (552)
16 PF12911 OppC_N: N-terminal TM 49.5 39 0.00084 21.4 4.0 26 85-110 5-31 (56)
17 PF11364 DUF3165: Protein of u 46.8 35 0.00077 25.2 3.8 51 101-151 29-79 (81)
18 PF11190 DUF2976: Protein of u 45.2 55 0.0012 24.1 4.7 41 80-123 14-54 (87)
19 PF14372 DUF4413: Domain of un 41.1 91 0.002 22.5 5.3 30 76-106 31-60 (101)
20 PF11833 DUF3353: Protein of u 40.2 44 0.00096 27.4 3.9 62 77-144 74-135 (194)
21 PF11833 DUF3353: Protein of u 37.9 1.3E+02 0.0028 24.7 6.3 42 85-126 129-170 (194)
22 PRK06007 fliF flagellar MS-rin 37.4 64 0.0014 30.2 4.9 51 77-127 4-56 (542)
23 PF06522 B12D: NADH-ubiquinone 37.0 13 0.00029 25.9 0.4 18 133-150 16-33 (73)
24 TIGR00206 fliF flagellar basal 36.3 76 0.0016 29.9 5.3 18 77-94 4-21 (555)
25 COG1280 RhtB Putative threonin 35.1 37 0.00081 27.3 2.7 33 115-147 61-93 (208)
26 PF07787 DUF1625: Protein of u 34.9 1.2E+02 0.0025 25.2 5.6 30 99-128 188-218 (248)
27 PF06072 Herpes_US9: Alphaherp 34.7 1.6E+02 0.0035 20.6 6.0 43 77-119 10-55 (60)
28 TIGR00766 ribonuclease, putati 34.0 1E+02 0.0022 25.3 5.1 22 101-122 85-110 (263)
29 PF04418 DUF543: Domain of unk 34.0 1E+02 0.0022 22.0 4.5 30 84-113 17-49 (75)
30 PF05603 DUF775: Protein of un 33.8 83 0.0018 25.9 4.6 47 49-97 148-196 (202)
31 KOG0289 mRNA splicing factor [ 32.3 36 0.00079 32.2 2.5 19 74-92 65-83 (506)
32 PF06295 DUF1043: Protein of u 31.1 45 0.00097 25.4 2.4 19 96-114 1-19 (128)
33 COG4956 Integral membrane prot 29.1 1.3E+02 0.0028 27.5 5.3 50 100-149 83-134 (356)
34 PRK04949 putative sulfate tran 28.9 2E+02 0.0043 24.4 6.2 77 53-143 101-179 (251)
35 PF10031 DUF2273: Small integr 25.6 1.3E+02 0.0029 19.9 3.6 32 86-119 1-33 (51)
36 PF10958 DUF2759: Protein of u 25.5 51 0.0011 22.5 1.7 42 105-146 3-44 (52)
37 PF10192 GpcrRhopsn4: Rhodopsi 24.1 58 0.0013 27.0 2.1 53 90-142 168-222 (257)
38 PF10710 DUF2512: Protein of u 24.0 68 0.0015 25.1 2.4 57 91-148 55-112 (136)
39 PF04367 DUF502: Protein of un 23.6 1.7E+02 0.0036 21.4 4.2 31 98-128 10-40 (108)
40 PF13706 PepSY_TM_3: PepSY-ass 23.5 1.4E+02 0.003 18.2 3.2 22 98-119 10-31 (37)
41 PF03904 DUF334: Domain of unk 23.0 2.7E+02 0.0059 24.1 5.9 43 77-119 128-170 (230)
42 PRK11281 hypothetical protein; 22.9 2.3E+02 0.0049 29.4 6.3 62 84-145 775-856 (1113)
43 PF03208 PRA1: PRA1 family pro 22.8 1.4E+02 0.0031 22.4 3.9 34 77-110 25-58 (153)
44 TIGR03745 conj_TIGR03745 integ 22.5 3E+02 0.0066 21.1 5.5 40 80-122 30-69 (104)
45 PF15225 IL32: Interleukin 32 21.5 3.8E+02 0.0082 20.5 6.0 25 51-92 37-61 (104)
46 PF14257 DUF4349: Domain of un 21.4 4.1E+02 0.0088 21.9 6.6 31 80-110 217-247 (262)
47 COG4280 Predicted membrane pro 21.4 1.4E+02 0.0031 25.8 3.9 67 77-145 16-82 (236)
48 KOG4452 Predicted membrane pro 21.0 22 0.00049 25.9 -0.8 21 122-142 18-38 (79)
49 TIGR02240 PHA_depoly_arom poly 21.0 59 0.0013 25.7 1.5 56 67-122 63-119 (276)
50 PF06716 DUF1201: Protein of u 20.9 30 0.00064 23.6 -0.2 16 134-149 24-39 (54)
51 COG2076 EmrE Membrane transpor 20.8 2.6E+02 0.0056 21.3 4.9 51 79-140 13-64 (106)
52 PF09991 DUF2232: Predicted me 20.8 4.4E+02 0.0096 21.0 8.5 54 77-130 145-199 (290)
53 TIGR02427 protocat_pcaD 3-oxoa 20.5 57 0.0012 23.7 1.2 55 67-121 51-106 (251)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=3.8e-58 Score=366.95 Aligned_cols=149 Identities=83% Similarity=1.280 Sum_probs=145.8
Q ss_pred CCccccccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHhcCCcccccccchHH
Q 031864 1 MASSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATELPE 80 (151)
Q Consensus 1 ma~~~~~~~~~~~~~~~k~~~~~~~~~~~~~sLp~LPp~~~~s~~~~~k~~~~~r~~ar~v~~~a~~e~~~~~~~~~~~e 80 (151)
|++ |++++||+++|+|+|++++++++||.+||.||||+.++|+++||+++||||++|+|++||+||+++++++++++|
T Consensus 1 ~~~--l~~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~e 78 (167)
T PLN02777 1 MTP--LSISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPE 78 (167)
T ss_pred CCc--cccccccccccCCCCCcCcccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHH
Confidence 555 999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhcccCCCC
Q 031864 81 IVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151 (151)
Q Consensus 81 ~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyLlf~~~R 151 (151)
+++++||+||+.|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++||
T Consensus 79 i~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~R 149 (167)
T PLN02777 79 IVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 149 (167)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.93 E-value=7.2e-27 Score=170.03 Aligned_cols=71 Identities=39% Similarity=0.825 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhcccCCCC
Q 031864 81 IVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151 (151)
Q Consensus 81 ~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyLlf~~~R 151 (151)
+-+.+.+.|+++++++..+++++++++++|++.+|++|||+||++|++|||||+||++||+||||+|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R 74 (90)
T PF14159_consen 4 LPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENR 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhH
Confidence 33455555778888999999999999999999999999999999999999999999999999999999998
No 3
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=89.76 E-value=0.7 Score=33.77 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCcc
Q 031864 82 VKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISA-IDRLPLVP 126 (151)
Q Consensus 82 v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~A-Id~iPLlp 126 (151)
++++++.|++.++++....+.+++++++-+..-+..+ +|.|--+|
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iP 46 (90)
T PF14159_consen 1 LSKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIP 46 (90)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3689999999999999999999998888777766554 56565555
No 4
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=73.89 E-value=5.3 Score=30.63 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHh-hcCCCcchhhhhhhhhheehhhhhhcccCC
Q 031864 115 MISAI-DRLPLVPGVLELVGIGYTGWFAYKNLVFKP 149 (151)
Q Consensus 115 vl~AI-d~iPLlp~llELVGigyt~WF~yRyLlf~~ 149 (151)
-+.++ +..|.+-..++++|..|..|+.|+.+..+.
T Consensus 47 g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 47 GLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445 669999999999999999999999876543
No 5
>PRK09304 arginine exporter protein; Provisional
Probab=71.52 E-value=4.3 Score=32.33 Aligned_cols=47 Identities=13% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhcCCCcchhhhhhhhhheehhhhhhc
Q 031864 99 TSLAVTVAIAVWGS---TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNL 145 (151)
Q Consensus 99 ~~l~~~aival~~~---~~vl~AId~iPLlp~llELVGigyt~WF~yRyL 145 (151)
.+++++.-..+|+. .++-.-++..|.+=.++.++|..|..|..||-+
T Consensus 39 ~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~ 88 (207)
T PRK09304 39 IALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAF 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444 333334789999999999999999999999865
No 6
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=70.61 E-value=12 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.0
Q ss_pred CCCcchhhhhhhhhheehhhhhhccc
Q 031864 122 LPLVPGVLELVGIGYTGWFAYKNLVF 147 (151)
Q Consensus 122 iPLlp~llELVGigyt~WF~yRyLlf 147 (151)
|| -.+..|.|+|++++|+.|..-+
T Consensus 95 vp--e~lw~Llg~~vlgy~~~Rs~eK 118 (123)
T PF11351_consen 95 VP--EPLWWLLGAGVLGYFGARSQEK 118 (123)
T ss_pred CC--HHHHHHHHHHHhhhHHHhhHHH
Confidence 55 4788999999999999997544
No 7
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=69.22 E-value=4.5 Score=28.98 Aligned_cols=19 Identities=37% Similarity=0.863 Sum_probs=16.2
Q ss_pred cccchHHHHHHHHHHHHhh
Q 031864 74 AATELPEIVKTVQEAWDKV 92 (151)
Q Consensus 74 ~~~~~~e~v~~l~~~Wd~~ 92 (151)
+.+.+|.+++.||++||.+
T Consensus 2 ~~~SIP~lL~~lQnEWDa~ 20 (70)
T PF08606_consen 2 TATSIPSLLSTLQNEWDAL 20 (70)
T ss_pred CcCcHHHHHHHHHHHHHHH
Confidence 3468999999999999974
No 8
>PRK10958 leucine export protein LeuE; Provisional
Probab=65.10 E-value=15 Score=29.50 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCcchhhhhhhhhheehhhhhhc
Q 031864 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNL 145 (151)
Q Consensus 113 ~~vl~AId~iPLlp~llELVGigyt~WF~yRyL 145 (151)
.++-.-++..|.+-..++++|.+|..|+.||-+
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~ 95 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKML 95 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677899999999999999999999765
No 9
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=65.08 E-value=7.8 Score=30.64 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCCCcchhhhhhhhhheehhhhhhcc
Q 031864 97 AVTSLAVTVAIAVWGSTGMI-SAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 97 ~~~~l~~~aival~~~~~vl-~AId~iPLlp~llELVGigyt~WF~yRyLl 146 (151)
..+|...|-++-..+..+.+ .-++..|.+=.++.++|..|..|..||-+-
T Consensus 42 ~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~ 92 (195)
T PRK10323 42 VLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIAT 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555444444444 346688999999999999999999998764
No 10
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=62.65 E-value=8.3 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCcchhhhhhhhhheehhhhhhccc
Q 031864 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVF 147 (151)
Q Consensus 113 ~~vl~AId~iPLlp~llELVGigyt~WF~yRyLlf 147 (151)
.++-.-++..|.+=.+++++|..|..|+.+|-+-.
T Consensus 59 ~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 59 VGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555678889999999999999999999987643
No 11
>TIGR00948 2a75 L-lysine exporter.
Probab=60.73 E-value=11 Score=28.93 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCcchhhhhhhhhheehhhhhhcc
Q 031864 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 113 ~~vl~AId~iPLlp~llELVGigyt~WF~yRyLl 146 (151)
.++-..++..|.+=..+.++|-.|..|..||-+-
T Consensus 42 ~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r 75 (177)
T TIGR00948 42 FGVAALLAASPILLAVLTWGGALFLLWYGFLAAK 75 (177)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456789999999999999999999997654
No 12
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=60.60 E-value=10 Score=29.08 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCcchhhhhhhhhheehhhhhhcc
Q 031864 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 113 ~~vl~AId~iPLlp~llELVGigyt~WF~yRyLl 146 (151)
.++-.-++..|.+-..+.++|-.|..|+.||-+-
T Consensus 41 ~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 41 LGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999999999999999998554
No 13
>PRK10229 threonine efflux system; Provisional
Probab=60.32 E-value=18 Score=28.42 Aligned_cols=48 Identities=21% Similarity=0.505 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhcCCCcchhhhhhhhhheehhhhhhcc
Q 031864 99 TSLAVTVAIAVWGS---TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 99 ~~l~~~aival~~~---~~vl~AId~iPLlp~llELVGigyt~WF~yRyLl 146 (151)
..+++..-..+|+. .++-.-+...|.+-.++.++|..|..|+.|+-+-
T Consensus 41 ~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 41 GVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344433 3555566888999999999999999999998664
No 14
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=60.24 E-value=23 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 031864 79 PEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWG 111 (151)
Q Consensus 79 ~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~ 111 (151)
..|++++|. | .++.-..+++.+.++|++|+
T Consensus 10 eryfddiqk-w--irnit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 10 ERYFDDIQK-W--IRNITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHc
Confidence 356666654 3 33455578888999999996
No 15
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=57.24 E-value=21 Score=33.75 Aligned_cols=50 Identities=10% Similarity=0.216 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcc
Q 031864 77 ELPEIVKTVQEAWDKVE----DKYAVTSLAVTVAIAVWGSTGMI-SAIDRLPLVP 126 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~e----dk~~~~~l~~~aival~~~~~vl-~AId~iPLlp 126 (151)
.+.++++.+++.|.++. .+..+++.++++++++-++..+. ..=+-.||+.
T Consensus 4 ~~~~~~~~l~~~w~~l~~l~~~r~~~l~~~~~~~va~~~~~~~~~~~p~Y~~Lys 58 (552)
T PRK07193 4 LMNDMLDKLKQKWSPFQLLRGNRKLILLALLALLVAAAIVLSLWRSSQGYRPLYG 58 (552)
T ss_pred hHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCeeeccc
Confidence 56789999999999884 34444444444444433333332 3344455544
No 16
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=49.52 E-value=39 Score=21.38 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=14.7
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHHHH
Q 031864 85 VQEAWDKVE-DKYAVTSLAVTVAIAVW 110 (151)
Q Consensus 85 l~~~Wd~~e-dk~~~~~l~~~aival~ 110 (151)
.++.|++.. ||.+++|+++-+++.+-
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ 31 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLL 31 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 344555543 47777777665554443
No 17
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=46.78 E-value=35 Score=25.16 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhcccCCCC
Q 031864 101 LAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151 (151)
Q Consensus 101 l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyLlf~~~R 151 (151)
+++.+++++-+..++++.+.-.-+-|-+|=-+|+...++|..|-+.+=++|
T Consensus 29 i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k 79 (81)
T PF11364_consen 29 IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTK 79 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 344556666677788888888888899999999999999999988765543
No 18
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=45.24 E-value=55 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031864 80 EIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLP 123 (151)
Q Consensus 80 e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iP 123 (151)
++++.++. =..|-..+++++++++..+++..+.++.-+++-
T Consensus 14 ~~~~~i~~---y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir 54 (87)
T PF11190_consen 14 GIMETIKG---YAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIR 54 (87)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 344578899999999999999999999887763
No 19
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=41.13 E-value=91 Score=22.50 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 031864 76 TELPEIVKTVQEAWDKVEDKYAVTSLAVTVA 106 (151)
Q Consensus 76 ~~~~e~v~~l~~~Wd~~edk~~~~~l~~~ai 106 (151)
..+-+.++..++++|+|.+..-.+ +.+|+|
T Consensus 31 ~~l~~ma~~M~~KfdKYw~~~~~~-l~ia~I 60 (101)
T PF14372_consen 31 PDLKNMAKKMKEKFDKYWKDCNLL-LAIATI 60 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-HHHHHH
Confidence 378899999999999999866555 555544
No 20
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=40.17 E-value=44 Score=27.45 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhh
Q 031864 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKN 144 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRy 144 (151)
..|..++++...++..+..-...-.++-+++++|.... .-+=.|.+.=-+|++.++||.+|.
T Consensus 74 ~~p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~------~~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 74 PSPPWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLF------PAASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred ccchHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHH------cCCCCcchHHHHHHHHHHHHHHHh
Confidence 44555666655577766666666666666667776544 133344555568999999999986
No 21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=37.87 E-value=1.3e+02 Score=24.70 Aligned_cols=42 Identities=7% Similarity=-0.095 Sum_probs=31.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 031864 85 VQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVP 126 (151)
Q Consensus 85 l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp 126 (151)
+.-.-+|-.+....+++.+++++.-|+.++++...-..+.+|
T Consensus 129 iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p 170 (194)
T PF11833_consen 129 IYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVP 170 (194)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 333334655566789999999999999999998777666655
No 22
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=37.44 E-value=64 Score=30.23 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 031864 77 ELPEIVKTVQEAWDKVED--KYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPG 127 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~ed--k~~~~~l~~~aival~~~~~vl~AId~iPLlp~ 127 (151)
.+.++++++.+.|.++.. +..+++.+++.++++-++.-..+-=+..||+.+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~qk~~l~~~~~~~v~~~~~l~~~~~~p~y~~Ly~~ 56 (542)
T PRK06007 4 KLKELMEKLKEFLQKLSKKRKIALIGAGAAVVAAIVALVLWASRPDYRVLYSN 56 (542)
T ss_pred hHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHhhCCCCeeehhcC
Confidence 456888999999987654 444444444444443333333344455566554
No 23
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=36.95 E-value=13 Score=25.86 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=13.7
Q ss_pred hhhheehhhhhhcccCCC
Q 031864 133 GIGYTGWFAYKNLVFKPD 150 (151)
Q Consensus 133 Gigyt~WF~yRyLlf~~~ 150 (151)
|++..++|.+|+|+..+|
T Consensus 16 a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 16 AVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 445666999999988775
No 24
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=36.30 E-value=76 Score=29.91 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHhhhh
Q 031864 77 ELPEIVKTVQEAWDKVED 94 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~ed 94 (151)
.+..+.+++++.|.++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~ 21 (555)
T TIGR00206 4 TFTQFKVSAKEFFKKLSK 21 (555)
T ss_pred HHHHHHHHHHHHHHhcCh
Confidence 455777888888987763
No 25
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=35.08 E-value=37 Score=27.31 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=28.1
Q ss_pred HHHHhhcCCCcchhhhhhhhhheehhhhhhccc
Q 031864 115 MISAIDRLPLVPGVLELVGIGYTGWFAYKNLVF 147 (151)
Q Consensus 115 vl~AId~iPLlp~llELVGigyt~WF~yRyLlf 147 (151)
+-.-+..-|.+-.++.++|-.|..|..++-+..
T Consensus 61 l~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra 93 (208)
T COG1280 61 LAALLATSPALFTVLKLAGAAYLLYLGWKALRA 93 (208)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335678899999999999999999999986653
No 26
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=34.87 E-value=1.2e+02 Score=25.15 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhcCCCcchh
Q 031864 99 TSLAVTVAIAVWGSTGMISA-IDRLPLVPGV 128 (151)
Q Consensus 99 ~~l~~~aival~~~~~vl~A-Id~iPLlp~l 128 (151)
++..+..++++.+....|.. +|-+|++..+
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeech
Confidence 44445556677777777766 4889998863
No 27
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=34.72 E-value=1.6e+02 Score=20.63 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHHHHHHHHHHHHHh
Q 031864 77 ELPEIVKTVQEAWDKVED--K-YAVTSLAVTVAIAVWGSTGMISAI 119 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~ed--k-~~~~~l~~~aival~~~~~vl~AI 119 (151)
...|++..+-.+=.+.++ + -.+..+++.+++++-++++.++++
T Consensus 10 TA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 10 TATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777442212222 2 233445556666777888888876
No 28
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=33.98 E-value=1e+02 Score=25.26 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHH----HHHHHHhhcC
Q 031864 101 LAVTVAIAVWGS----TGMISAIDRL 122 (151)
Q Consensus 101 l~~~aival~~~----~~vl~AId~i 122 (151)
.+++.++++|.. .++-.++|++
T Consensus 85 ~~ig~~~ll~tas~~~~~l~~aln~i 110 (263)
T TIGR00766 85 GLIGLATALYSGLNWMGNLREAISDV 110 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666654 4445556655
No 29
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=33.96 E-value=1e+02 Score=22.01 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhH---HHHHHHHHHHHHHHHHH
Q 031864 84 TVQEAWDKVEDKY---AVTSLAVTVAIAVWGST 113 (151)
Q Consensus 84 ~l~~~Wd~~edk~---~~~~l~~~aival~~~~ 113 (151)
.+.++||+.=+.. ..+|+++|+++++++.-
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~fr 49 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFFR 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHc
Confidence 7889999876644 34677777777776653
No 30
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=33.82 E-value=83 Score=25.89 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHHHHHHhcCCccc--ccccchHHHHHHHHHHHHhhhhhHH
Q 031864 49 KATTYCRKMARNVMAMATGEAPAE--VAATELPEIVKTVQEAWDKVEDKYA 97 (151)
Q Consensus 49 k~~~~~r~~ar~v~~~a~~e~~~~--~~~~~~~e~v~~l~~~Wd~~edk~~ 97 (151)
.+..+++|+++|....+++=+... ....-+| ++-|+++|++.|+|+.
T Consensus 148 ~~~~~A~ki~~NlfNyl~SF~~~~~~~~~~~VP--~~~~~~W~~kFe~Kl~ 196 (202)
T PF05603_consen 148 STKEFAQKIAENLFNYLSSFSGSQPQGGEEVVP--LSVFDKWWEKFERKLR 196 (202)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCCCceEEe--HHHHHHHHHHHHHHHh
Confidence 456788999999999876332221 0111111 4678999999999875
No 31
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.35 E-value=36 Score=32.23 Aligned_cols=19 Identities=47% Similarity=0.982 Sum_probs=16.2
Q ss_pred cccchHHHHHHHHHHHHhh
Q 031864 74 AATELPEIVKTVQEAWDKV 92 (151)
Q Consensus 74 ~~~~~~e~v~~l~~~Wd~~ 92 (151)
+.+.+|.+++.||+.||.+
T Consensus 65 satSIPalL~~lQdEWDav 83 (506)
T KOG0289|consen 65 SATSIPALLKTLQDEWDAV 83 (506)
T ss_pred CccchHHHHHHHHHHHHHH
Confidence 4567899999999999974
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.15 E-value=45 Score=25.41 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031864 96 YAVTSLAVTVAIAVWGSTG 114 (151)
Q Consensus 96 ~~~~~l~~~aival~~~~~ 114 (151)
|+++++++|+||++++.-.
T Consensus 1 y~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4677888888887776543
No 33
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=29.10 E-value=1.3e+02 Score=27.53 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcCCCcchhhhhhhhhheehhhhhhcccCC
Q 031864 100 SLAVTVAIAVWGSTGMISA--IDRLPLVPGVLELVGIGYTGWFAYKNLVFKP 149 (151)
Q Consensus 100 ~l~~~aival~~~~~vl~A--Id~iPLlp~llELVGigyt~WF~yRyLlf~~ 149 (151)
...+|.+++|-++.-+... .-.+|++..++-.++-...++|.+++-.++.
T Consensus 83 f~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 83 FGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhh
Confidence 3334444444444444443 3457889999999999999999998866553
No 34
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=28.92 E-value=2e+02 Score=24.37 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCccccc-ccchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-hhhh
Q 031864 53 YCRKMARNVMAMATGEAPAEVA-ATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVP-GVLE 130 (151)
Q Consensus 53 ~~r~~ar~v~~~a~~e~~~~~~-~~~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp-~llE 130 (151)
|..++|+.|-...+|++..+.. ..-+.|....+...|+| +.+.+.-.+++-+ +.-||.+. .+-=
T Consensus 101 F~~~lAE~VE~~l~g~~~~~~~~~~~~~~~~r~l~~el~k-------l~y~l~~~i~lll-------l~fIP~vg~~~~p 166 (251)
T PRK04949 101 FNGLLAEKVEARLTGETLPDTGIAGLVKDVPRILKREWQK-------LAYYLPRAIVLLL-------LSFIPVVGQTVAP 166 (251)
T ss_pred HhHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHhhhccHHHH
Confidence 5578888887778887432111 12223334444444443 3333332222211 23567664 2333
Q ss_pred hhhhhheehhhhh
Q 031864 131 LVGIGYTGWFAYK 143 (151)
Q Consensus 131 LVGigyt~WF~yR 143 (151)
+++.++++|+.-+
T Consensus 167 vl~~~~~awll~~ 179 (251)
T PRK04949 167 VLWFLFSAWMMAI 179 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 5778888887654
No 35
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.64 E-value=1.3e+02 Score=19.86 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 031864 86 QEAWDKVEDKYAVTSLAVTVAIAV-WGSTGMISAI 119 (151)
Q Consensus 86 ~~~Wd~~edk~~~~~l~~~aival-~~~~~vl~AI 119 (151)
+|.|++++.|. ++.++|.++++ ++..+...++
T Consensus 1 ~e~~~~~~~~i--iG~~~G~ila~l~l~~GF~~tl 33 (51)
T PF10031_consen 1 MEFWKNHRGKI--IGGLIGLILALLILTFGFWKTL 33 (51)
T ss_pred ChHHHHCcchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677765554 44444444444 4555555554
No 36
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=25.52 E-value=51 Score=22.49 Aligned_cols=42 Identities=14% Similarity=0.381 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhcc
Q 031864 105 VAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 105 aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyLl 146 (151)
++|++-..-|++.++.+=-+++-+|-++-+..-|||...-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777888887888888888888888888765443
No 37
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=24.14 E-value=58 Score=26.95 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=43.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCcchhhhhhhhhheehhhh
Q 031864 90 DKVEDKYAVTSLAVTVAIAVWGSTGMISAI--DRLPLVPGVLELVGIGYTGWFAY 142 (151)
Q Consensus 90 d~~edk~~~~~l~~~aival~~~~~vl~AI--d~iPLlp~llELVGigyt~WF~y 142 (151)
..+|.....+.+++=.++++|...+...++ .+=|.--.++-.-|++++.||.+
T Consensus 168 ~~y~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~ 222 (257)
T PF10192_consen 168 YFYDSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLS 222 (257)
T ss_pred eecccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777788889899999988 88898889999999999999985
No 38
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=23.97 E-value=68 Score=25.06 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=44.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cchhhhhhhhhheehhhhhhcccC
Q 031864 91 KVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPL-VPGVLELVGIGYTGWFAYKNLVFK 148 (151)
Q Consensus 91 ~~edk~~~~~l~~~aival~~~~~vl~AId~iPL-lp~llELVGigyt~WF~yRyLlf~ 148 (151)
++.|..++++=.+.+.+.+|+....+.. +..+. ...++=-+.++..=||.=|||.++
T Consensus 55 r~gN~~AtiaD~~La~~~iW~~~~~~~~-~~~~~~~~allsA~~i~v~E~fFH~yl~~~ 112 (136)
T PF10710_consen 55 RTGNIVATIADFGLAFLVIWLMGYILTG-NYVSIAWAALLSAVLIGVGEYFFHRYLLRN 112 (136)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888889999999999998887 44444 444555677788889999998764
No 39
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=23.59 E-value=1.7e+02 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchh
Q 031864 98 VTSLAVTVAIAVWGSTGMISAIDRLPLVPGV 128 (151)
Q Consensus 98 ~~~l~~~aival~~~~~vl~AId~iPLlp~l 128 (151)
++|++.--.++-|+...+=+-+++||++..+
T Consensus 10 ~iG~l~~~~~g~~l~~~~e~ll~riP~v~~i 40 (108)
T PF04367_consen 10 LIGLLARNYFGKWLLNWLERLLQRIPLVKSI 40 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 4455555566677777777778899986544
No 40
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=23.53 E-value=1.4e+02 Score=18.18 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031864 98 VTSLAVTVAIAVWGSTGMISAI 119 (151)
Q Consensus 98 ~~~l~~~aival~~~~~vl~AI 119 (151)
-+|+++|.++.+|..+|.+-..
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999887654
No 41
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.98 E-value=2.7e+02 Score=24.08 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031864 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAI 119 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AI 119 (151)
+...++.++++.-++|+.....+-.++++++++.++.+++-.+
T Consensus 128 e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 128 ENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 5567777888888888888888888888888777777777654
No 42
>PRK11281 hypothetical protein; Provisional
Probab=22.91 E-value=2.3e+02 Score=29.43 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhhcCCC-----------------cchhhhhhhhhheehhhhh
Q 031864 84 TVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMIS---AIDRLPL-----------------VPGVLELVGIGYTGWFAYK 143 (151)
Q Consensus 84 ~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~---AId~iPL-----------------lp~llELVGigyt~WF~yR 143 (151)
++...+++.-.-..++.+++..++.+|+..-++. -.|++.| ++.++..+-+.+.+|++.|
T Consensus 775 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r 854 (1113)
T PRK11281 775 ALEQVNQQSLRLTDLLLFALFFVMFYWVWSDLITVFSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVR 854 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544455555555555555544443 3345554 4667777778888898888
Q ss_pred hc
Q 031864 144 NL 145 (151)
Q Consensus 144 yL 145 (151)
++
T Consensus 855 ~l 856 (1113)
T PRK11281 855 NL 856 (1113)
T ss_pred HH
Confidence 76
No 43
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=22.83 E-value=1.4e+02 Score=22.37 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 031864 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVW 110 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~ 110 (151)
+..|..+.++..-..+...|.++.+++.++..++
T Consensus 25 ~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~ 58 (153)
T PF03208_consen 25 SFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLT 58 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668888888888888889988777765554443
No 44
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=22.48 E-value=3e+02 Score=21.10 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031864 80 EIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRL 122 (151)
Q Consensus 80 e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~i 122 (151)
.+++.+|+ =..|-..+++++++++..+++..+.+.+-+++
T Consensus 30 g~~~tik~---Y~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 30 GIMQTIKN---YGYDGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777 34458889999999999999998888877654
No 45
>PF15225 IL32: Interleukin 32
Probab=21.46 E-value=3.8e+02 Score=20.51 Aligned_cols=25 Identities=32% Similarity=0.617 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHhh
Q 031864 51 TTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKV 92 (151)
Q Consensus 51 ~~~~r~~ar~v~~~a~~e~~~~~~~~~~~e~v~~l~~~Wd~~ 92 (151)
-+||.|.-|.+.+|.. .+|.+|+++
T Consensus 37 Esf~dkvmR~Fqamlq-----------------rLQ~ww~~v 61 (104)
T PF15225_consen 37 ESFCDKVMRWFQAMLQ-----------------RLQTWWQAV 61 (104)
T ss_pred hhHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 4789999999988876 788888874
No 46
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.41 E-value=4.1e+02 Score=21.86 Aligned_cols=31 Identities=3% Similarity=0.114 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 031864 80 EIVKTVQEAWDKVEDKYAVTSLAVTVAIAVW 110 (151)
Q Consensus 80 e~v~~l~~~Wd~~edk~~~~~l~~~aival~ 110 (151)
.+.+.|++-|+..-.-+..+..++++++-+|
T Consensus 217 ~~~~al~~~~~~~~~~~~~lv~~l~~l~p~~ 247 (262)
T PF14257_consen 217 RFRDALKNGWNALVSFLSGLVVFLVGLLPWL 247 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666654433333333333333333
No 47
>COG4280 Predicted membrane protein [Function unknown]
Probab=21.41 E-value=1.4e+02 Score=25.81 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhc
Q 031864 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNL 145 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyL 145 (151)
|+.|++.=..-.=.-+..+.++.+-++|..+.+-+...+-.-+--+|+= .+++|-=+-..||.||++
T Consensus 16 ElvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~lvPln--~lqiv~gvLLllFG~rw~ 82 (236)
T COG4280 16 ELVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLYLVPLN--YLQIVSGVLLLLFGYRWI 82 (236)
T ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccceeeeech--HHHHHHHHHHHHHHHHHH
Confidence 4444443332222245556667666666666666666666666667763 466665566789999875
No 48
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=21.05 E-value=22 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.679 Sum_probs=17.3
Q ss_pred CCCcchhhhhhhhhheehhhh
Q 031864 122 LPLVPGVLELVGIGYTGWFAY 142 (151)
Q Consensus 122 iPLlp~llELVGigyt~WF~y 142 (151)
.|.+..++--||+.++.||..
T Consensus 18 fPhLttvLl~iG~fftAwFf~ 38 (79)
T KOG4452|consen 18 FPHLTTVLLGIGLFFTAWFFM 38 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 577777888899999999863
No 49
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=20.99 E-value=59 Score=25.74 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=37.6
Q ss_pred cCCcccccccchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031864 67 GEAPAEVAATELPEIVKTVQEAWDKVE-DKYAVTSLAVTVAIAVWGSTGMISAIDRL 122 (151)
Q Consensus 67 ~e~~~~~~~~~~~e~v~~l~~~Wd~~e-dk~~~~~l~~~aival~~~~~vl~AId~i 122 (151)
|+++.+.....+.++.+++.+..+.++ ++..++|.-.|+.+++.++.--=+-|+++
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 554332233467788888888888876 57888888889999888775433334433
No 50
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=20.93 E-value=30 Score=23.61 Aligned_cols=16 Identities=31% Similarity=0.793 Sum_probs=12.5
Q ss_pred hhheehhhhhhcccCC
Q 031864 134 IGYTGWFAYKNLVFKP 149 (151)
Q Consensus 134 igyt~WF~yRyLlf~~ 149 (151)
+.|-.||+|+.+||..
T Consensus 24 ~~~F~~F~~Kqilfr~ 39 (54)
T PF06716_consen 24 LVVFIWFVYKQILFRN 39 (54)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3467899999998864
No 51
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=20.82 E-value=2.6e+02 Score=21.27 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehh
Q 031864 79 PEIVKTVQEAWDKVED-KYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWF 140 (151)
Q Consensus 79 ~e~v~~l~~~Wd~~ed-k~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF 140 (151)
-|++-..--||.+-.. +.-.+..+++..++++..+ -|++++| +|+.|..|=
T Consensus 13 ~EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls---~alk~ip--------vgvAYAiW~ 64 (106)
T COG2076 13 LEVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLS---LALKTIP--------LGVAYAIWT 64 (106)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH---HHHhhCc--------hHHHHHHHH
Confidence 3677777666665322 3334555566666666554 4566677 477777774
No 52
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=20.78 E-value=4.4e+02 Score=21.04 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhhh
Q 031864 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDR-LPLVPGVLE 130 (151)
Q Consensus 77 ~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~-iPLlp~llE 130 (151)
+..+.+++..+.+...=--...+...+.+.+.+++...+++-.+. +|-.|++-|
T Consensus 145 ~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~~~~~~~~~~ 199 (290)
T PF09991_consen 145 QLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGIPIPPLPPFRE 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHH
Confidence 344444444444433333344566667777788888888877753 466666544
No 53
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.46 E-value=57 Score=23.68 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=34.1
Q ss_pred cCCcccccccchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031864 67 GEAPAEVAATELPEIVKTVQEAWDKVE-DKYAVTSLAVTVAIAVWGSTGMISAIDR 121 (151)
Q Consensus 67 ~e~~~~~~~~~~~e~v~~l~~~Wd~~e-dk~~~~~l~~~aival~~~~~vl~AId~ 121 (151)
|+++.......+.++.+++.+..+... +++.++|.-.|+.+++.++..--+.|++
T Consensus 51 G~s~~~~~~~~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~ 106 (251)
T TIGR02427 51 GLSDAPEGPYSIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRA 106 (251)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHH
Confidence 444332223356777778877777664 4677778888888888766543333333
Done!