Query 031864
Match_columns 151
No_of_seqs 132 out of 170
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tx3_A Uncharacterized protein 42.8 54 0.0018 26.5 6.1 74 52-143 103-179 (249)
2 2k1k_A Ephrin type-A receptor 29.5 65 0.0022 19.3 3.5 18 97-114 12-29 (38)
3 3qmv_A Thioesterase, REDJ; alp 19.8 35 0.0012 25.0 1.1 47 74-120 96-144 (280)
4 1mj5_A 1,3,4,6-tetrachloro-1,4 17.2 48 0.0016 23.8 1.3 50 76-125 80-131 (302)
5 2kyh_A KVAP, voltage-gated pot 16.0 1.5E+02 0.0053 21.7 3.9 56 89-146 15-71 (147)
6 1ors_C Potassium channel; volt 16.0 1.4E+02 0.0049 21.0 3.6 45 102-146 11-56 (132)
7 3r0v_A Alpha/beta hydrolase fo 15.6 44 0.0015 23.3 0.7 40 75-114 68-107 (262)
8 3llc_A Putative hydrolase; str 13.7 56 0.0019 22.8 0.8 48 67-114 78-126 (270)
9 2kfe_A Meucin-24; alpha-helix, 13.3 1.3E+02 0.0044 17.1 2.1 17 80-96 5-21 (26)
10 3g9x_A Haloalkane dehalogenase 13.2 70 0.0024 22.7 1.2 49 67-115 70-119 (299)
No 1
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=42.77 E-value=54 Score=26.46 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhcCCcccccccc-hHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhc-CCCcchh
Q 031864 52 TYCRKMARNVMAMATGEAPAEVAATE-LPEIVKTVQEAWDKVEDKYAVTSLAV-TVAIAVWGSTGMISAIDR-LPLVPGV 128 (151)
Q Consensus 52 ~~~r~~ar~v~~~a~~e~~~~~~~~~-~~e~v~~l~~~Wd~~edk~~~~~l~~-~aival~~~~~vl~AId~-iPLlp~l 128 (151)
-|...+|+.|-.+.+|+.+++....+ ..|+...+++.|.+ +++.+ .+++.+ .++- ||.+..
T Consensus 103 pF~~~LAE~VE~~l~g~~~~~~~~~~~~~~l~r~l~~~l~~-------l~~~l~~~l~ll--------~L~f~IP~vg~- 166 (249)
T 3tx3_A 103 PFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQK-------LMYYIPRALGFF--------LLSLVIPVIGQ- 166 (249)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCSSGGGSSSHHHHHHHHHHH-------HHHHHHHHHHHH--------HHHHHSTTHHH-
T ss_pred HhhHHHHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--------HHHhccchHHH-
Confidence 45678888887788888765432223 24555666666655 22222 122222 1233 676654
Q ss_pred hhhhhhhheehhhhh
Q 031864 129 LELVGIGYTGWFAYK 143 (151)
Q Consensus 129 lELVGigyt~WF~yR 143 (151)
++...+++|+.-+
T Consensus 167 --vl~~~~~~~~lg~ 179 (249)
T 3tx3_A 167 --VLWYIFVCWMMSI 179 (249)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 7777788877543
No 2
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.54 E-value=65 Score=19.28 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031864 97 AVTSLAVTVAIAVWGSTG 114 (151)
Q Consensus 97 ~~~~l~~~aival~~~~~ 114 (151)
+..+++++.++++-++.+
T Consensus 12 aIAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHH
Confidence 345555555555544443
No 3
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*
Probab=19.76 E-value=35 Score=24.99 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031864 74 AATELPEIVKTVQEAWDKV--EDKYAVTSLAVTVAIAVWGSTGMISAID 120 (151)
Q Consensus 74 ~~~~~~e~v~~l~~~Wd~~--edk~~~~~l~~~aival~~~~~vl~AId 120 (151)
...++.++++++.+..++. .+++.++|.=.|+.+++.++.-.-+-+.
T Consensus 96 ~~~~~~~~a~~~~~~l~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~~~ 144 (280)
T 3qmv_A 96 PYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGA 144 (280)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCSSSEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHHcCC
Confidence 3457888888888888877 4578888888999999988776555444
No 4
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A
Probab=17.16 E-value=48 Score=23.77 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 031864 76 TELPEIVKTVQEAWDKVE--DKYAVTSLAVTVAIAVWGSTGMISAIDRLPLV 125 (151)
Q Consensus 76 ~~~~e~v~~l~~~Wd~~e--dk~~~~~l~~~aival~~~~~vl~AId~iPLl 125 (151)
.++.++++++.+..++.. ++..++|.-.|+.+++.+..--=+-|+++=++
T Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~ 131 (302)
T 1mj5_A 80 YAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYM 131 (302)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCceEEEEEECCccHHHHHHHHHCHHHHhheeee
Confidence 467788888888777776 67888999999999998776543445554333
No 5
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=16.04 E-value=1.5e+02 Score=21.66 Aligned_cols=56 Identities=13% Similarity=-0.120 Sum_probs=32.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cchhhhhhhhhheehhhhhhcc
Q 031864 89 WDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPL-VPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 89 Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPL-lp~llELVGigyt~WF~yRyLl 146 (151)
|+-.|+|..-..++ +++.+.+...+++....++- ....++.+-....+||+.-|++
T Consensus 15 ~~~~e~~~f~~~i~--~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~l 71 (147)
T 2kyh_A 15 GDVMEHPLVELGVS--YAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAY 71 (147)
T ss_dssp HHHHTCHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHH--HHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566665433222 23333444555666655542 2346788888888888877765
No 6
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=15.97 E-value=1.4e+02 Score=21.02 Aligned_cols=45 Identities=13% Similarity=-0.141 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-cchhhhhhhhhheehhhhhhcc
Q 031864 102 AVTVAIAVWGSTGMISAIDRLPL-VPGVLELVGIGYTGWFAYKNLV 146 (151)
Q Consensus 102 ~~~aival~~~~~vl~AId~iPL-lp~llELVGigyt~WF~yRyLl 146 (151)
.+.+++.+-+...++++.+.++- ....++.+-...++||+.-|++
T Consensus 11 ~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~l 56 (132)
T 1ors_C 11 GVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAY 56 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666655542 4567888889999999988876
No 7
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Probab=15.59 E-value=44 Score=23.33 Aligned_cols=40 Identities=5% Similarity=0.095 Sum_probs=31.3
Q ss_pred ccchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 031864 75 ATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTG 114 (151)
Q Consensus 75 ~~~~~e~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~ 114 (151)
..++.++.+++.+.-+...++..++|.-.|+.+++.+..-
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~l~G~S~Gg~ia~~~a~~ 107 (262)
T 3r0v_A 68 PYAVEREIEDLAAIIDAAGGAAFVFGMSSGAGLSLLAAAS 107 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCEEEEEETHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHHHHh
Confidence 3467788888888777777788888888899988876543
No 8
>3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis}
Probab=13.69 E-value=56 Score=22.81 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=34.7
Q ss_pred cCCcccccccchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH
Q 031864 67 GEAPAEVAATELPEIVKTVQEAWDKVE-DKYAVTSLAVTVAIAVWGSTG 114 (151)
Q Consensus 67 ~e~~~~~~~~~~~e~v~~l~~~Wd~~e-dk~~~~~l~~~aival~~~~~ 114 (151)
|+++.......+.++++++.+..+.+. +++.++|.-.|+.+++.++..
T Consensus 78 G~s~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~G~S~Gg~~a~~~a~~ 126 (270)
T 3llc_A 78 GASGGAFRDGTISRWLEEALAVLDHFKPEKAILVGSSMGGWIALRLIQE 126 (270)
T ss_dssp TTCCSCGGGCCHHHHHHHHHHHHHHHCCSEEEEEEETHHHHHHHHHHHH
T ss_pred CCCCCccccccHHHHHHHHHHHHHHhccCCeEEEEeChHHHHHHHHHHH
Confidence 444433344577788888888777774 577888888999999887765
No 9
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=13.33 E-value=1.3e+02 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhhH
Q 031864 80 EIVKTVQEAWDKVEDKY 96 (151)
Q Consensus 80 e~v~~l~~~Wd~~edk~ 96 (151)
|+++.++++..+..||.
T Consensus 5 ei~~kiK~kl~~akdK~ 21 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKM 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888888775
No 10
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A
Probab=13.24 E-value=70 Score=22.69 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=34.6
Q ss_pred cCCcccccccchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHH
Q 031864 67 GEAPAEVAATELPEIVKTVQEAWDKVE-DKYAVTSLAVTVAIAVWGSTGM 115 (151)
Q Consensus 67 ~e~~~~~~~~~~~e~v~~l~~~Wd~~e-dk~~~~~l~~~aival~~~~~v 115 (151)
|+++......++.++++++.+.-+... ++..++|.-.|+.+++.++..-
T Consensus 70 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~ 119 (299)
T 3g9x_A 70 GKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRN 119 (299)
T ss_dssp TTSCCCCCCCCHHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEeCccHHHHHHHHHhc
Confidence 444333334577788888888777766 4778888889999998877653
Done!