BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031865
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23326|RK35_SPIOL 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea
GN=RPL35 PE=1 SV=1
Length = 159
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 108/152 (71%), Gaps = 6/152 (3%)
Query: 3 SMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSIS---ASPLLFRHN 59
+ +SF L P S+ A++G SL + +L ++L L+SS SIS P++ ++
Sbjct: 8 ATLSFKTPSLSLSPPSTRCSAAQGISL-THFNKQLKSTLNLSSSSSISSSKVQPIVLKNK 66
Query: 60 NLPTTVTQNRPQT--VTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNT 117
+ T + + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNT
Sbjct: 67 RISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNT 126
Query: 118 KRKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 149
KRK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct: 127 KRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158
>sp|Q8YRL9|RL35_NOSS1 50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmI PE=3 SV=1
Length = 65
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR TG GKI+RR+A K HLL K T +K + SKM V+ D +NV L
Sbjct: 3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|Q3M7I2|RL35_ANAVT 50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmI PE=3 SV=1
Length = 65
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR TG GKI+RR+A K HLL K T +K + SKM V+ D +NV L
Sbjct: 3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|B2J0D1|RL35_NOSP7 50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rpmI PE=3 SV=1
Length = 65
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 43/63 (68%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR TG GKI+RR+AGK HLL K++ +K +SK V D NV L
Sbjct: 3 KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|A5GQ04|RL35_SYNR3 50S ribosomal protein L35 OS=Synechococcus sp. (strain RCC307)
GN=rpmI PE=3 SV=1
Length = 66
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 40/62 (64%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT +A+AKRFRVTG GK +RRRA HLL K+ KRK L M V D+D V L
Sbjct: 3 KLKTRRAAAKRFRVTGSGKFMRRRAFHNHLLDHKSPKRKRYLGTMAVVDERDHDRVSHML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|B5YLD0|RL35_THEYD 50S ribosomal protein L35 OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=rpmI PE=3 SV=1
Length = 66
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KTH+ +AKRF+VTG GKI+RRRA K HLL K +KR L ++ +V + Y + +
Sbjct: 3 KLKTHRGAAKRFKVTGTGKIMRRRANKSHLLTGKPSKRTRHLRQIAQVDETQYKAIRMLI 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|A9BDA5|RL35_PROM4 50S ribosomal protein L35 OS=Prochlorococcus marinus (strain MIT
9211) GN=rpmI PE=3 SV=1
Length = 65
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+VTG GK +RRRA + HLL K+TK K L+ V D DNV L
Sbjct: 3 KLKTRKAAAKRFKVTGTGKFMRRRAFRNHLLDHKSTKLKRHLATKAVVDERDADNVSLML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|B7K4V5|RL35_CYAP8 50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 8801)
GN=rpmI PE=3 SV=1
Length = 67
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 82 KMKTHKASAKRFRVTGKG-KILRRRAGKQHLLAKKNTKRKL-RLSKMHEVSRSDYDNVIG 139
K+KT KA+AKRFRVTG G KI RR+A K HLL K+++RK RLS + VS D NV
Sbjct: 3 KLKTRKAAAKRFRVTGSGKKIFRRKAFKNHLLQHKSSERKFRRLSGLSLVSEQDEANVRL 62
Query: 140 CLPYL 144
LPYL
Sbjct: 63 MLPYL 67
>sp|Q5N5F4|RL35_SYNP6 50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpmI PE=3 SV=1
Length = 66
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR++G GK +RR+A K HLL KN R+ RLS+ V +D + V L
Sbjct: 3 KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q31NR1|RL35_SYNE7 50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC
7942) GN=rpmI PE=3 SV=1
Length = 66
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR++G GK +RR+A K HLL KN R+ RLS+ V +D + V L
Sbjct: 3 KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|B8HPI6|RL35_CYAP4 50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpmI PE=3 SV=1
Length = 65
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR TG GK RR+A + HLL K+T RK +LS M V D + V L
Sbjct: 3 KLKTRKAAAKRFRQTGTGKFTRRKANRNHLLEHKSTARKNKLSHMAIVDERDEERVSLML 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|Q7NGV2|RL35_GLOVI 50S ribosomal protein L35 OS=Gloeobacter violaceus (strain PCC
7421) GN=rpmI PE=3 SV=1
Length = 65
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKT +++AKR+ VTG GK+ RRRAGK HLL K+ RK LS EVS +D V
Sbjct: 3 KMKTRQSAAKRYEVTGSGKLRRRRAGKNHLLQHKSAARKRSLSTKVEVSETDLYKVTRQC 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|Q2JR50|RL35_SYNJA 50S ribosomal protein L35 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpmI PE=3 SV=1
Length = 66
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR+TG GK +RRRAG HLL K + RK +L+ + VS+ D NV L
Sbjct: 3 KIKTRKAAAKRFRLTGSGKFMRRRAGHNHLLEHKTSNRKRKLAGVALVSKQDLANVRLML 62
Query: 142 P 142
P
Sbjct: 63 P 63
>sp|Q2JI03|RL35_SYNJB 50S ribosomal protein L35 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpmI PE=3 SV=1
Length = 66
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRFR+TG GK +RRRAG HLL K +KRK +L+ + V + D NV L
Sbjct: 3 KIKTRKAAAKRFRLTGSGKFMRRRAGHNHLLEHKTSKRKRKLAGVALVDKRDVVNVRLML 62
Query: 142 P 142
P
Sbjct: 63 P 63
>sp|A9KHG8|RL35_CLOPH 50S ribosomal protein L35 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rpmI PE=3 SV=1
Length = 65
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+VTG GK+ R +AGKQH+L KK+ K K L K + S+ N+ L
Sbjct: 3 KLKTSKAAAKRFKVTGTGKLKRMKAGKQHILTKKSQKTKRNLRKATMMDPSNEKNMKKIL 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|B0BZS9|RL35_ACAM1 50S ribosomal protein L35 OS=Acaryochloris marina (strain MBIC
11017) GN=rpmI PE=3 SV=1
Length = 65
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT +++AKRF+ +G GK +RR+A K HLL K RK RLSK VS D +NV +
Sbjct: 3 KLKTRRSAAKRFKRSGSGKFMRRKAYKNHLLEHKGPDRKSRLSKKCVVSEQDAENVRAMM 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|A5GHS0|RL35_SYNPW 50S ribosomal protein L35 OS=Synechococcus sp. (strain WH7803)
GN=rpmI PE=3 SV=1
Length = 65
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+ TG GK LRRRA + HLL K+ K K L+ V R+D D V +
Sbjct: 3 KLKTRKAAAKRFKATGTGKFLRRRAFRNHLLDHKSPKLKRHLATKAVVDRTDEDRVALMM 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q114D7|RL35_TRIEI 50S ribosomal protein L35 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmI PE=3 SV=1
Length = 65
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+A+RF+ TG GKI RR+A K HLL K++ RK LSK V +++ +NV +
Sbjct: 3 KLKTRKAAARRFKATGSGKIKRRKAFKSHLLEHKSSTRKNNLSKTTLVHKTNEENVRLMI 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|Q3ANJ5|RL35_SYNSC 50S ribosomal protein L35 OS=Synechococcus sp. (strain CC9605)
GN=rpmI PE=3 SV=1
Length = 65
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+ TG GK LRRRA + HLL K K+K L+ V R+D + V +
Sbjct: 3 KLKTRKAAAKRFKATGTGKFLRRRAFRNHLLDHKTPKQKRHLATKAVVDRTDEERVTLMM 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q3B0U8|RL35_SYNS9 50S ribosomal protein L35 OS=Synechococcus sp. (strain CC9902)
GN=rpmI PE=3 SV=1
Length = 65
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+ TG GK LRRRA + HLL K K+K L V R+D + V +
Sbjct: 3 KLKTRKAAAKRFKATGTGKFLRRRAFRNHLLDHKTPKQKRHLGTKAVVDRTDVERVTLMM 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|P51270|RK35_PORPU 50S ribosomal protein L35, chloroplastic OS=Porphyra purpurea
GN=rpl35 PE=3 SV=1
Length = 65
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA AKRF+V+ GKILR +A K HLL KK++K + LS +V D N+ L
Sbjct: 3 KLKTSKAIAKRFKVSSSGKILRHKASKSHLLQKKSSKHRRHLSSTCQVDSRDAKNISINL 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|Q7V9L2|RL35_PROMA 50S ribosomal protein L35 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpmI PE=3 SV=1
Length = 65
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+VTG GK +RRRA + HLL K++K K L V D +NV L
Sbjct: 3 KLKTRKAAAKRFKVTGTGKFMRRRAFRNHLLDHKSSKLKRHLGTKAVVDERDSENVSLML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q8DH01|RL35_THEEB 50S ribosomal protein L35 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpmI PE=3 SV=1
Length = 65
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT +A+AKRFR TG GK +RR+A K HLL K + RK RLS V D + V L
Sbjct: 3 KLKTRRAAAKRFRTTGSGKFVRRKANKNHLLEHKGSDRKNRLSHKALVDPRDVERVSLML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|B0K8B4|RL35_THEP3 50S ribosomal protein L35 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpmI PE=3 SV=1
Length = 65
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKRF+V GK+ R RA K HLL KN KRK RL K + +D N+ L
Sbjct: 3 KMKTHRGAAKRFKVLKSGKVKRSRAYKSHLLTHKNAKRKRRLRKATYLVGADAKNIKRLL 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q1XDL6|RK35_PORYE 50S ribosomal protein L35, chloroplastic OS=Porphyra yezoensis
GN=rpl35 PE=3 SV=1
Length = 65
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA AKRF+V+ GK LR +A K HLL KK++K++ LS V D N+ L
Sbjct: 3 KLKTSKAIAKRFKVSSSGKFLRHKASKSHLLQKKSSKQRRHLSSTCSVDLKDIKNIAMQL 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|Q6ANB9|RL35_DESPS 50S ribosomal protein L35 OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=rpmI PE=3 SV=2
Length = 65
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKT++ +AKRF+ TG G+I R +A H+L KK+TKRK L + VS +D N+ L
Sbjct: 3 KMKTNRGAAKRFKKTGSGRIKRGKAFTSHILTKKSTKRKRSLRQADLVSSADVKNIKKIL 62
Query: 142 PYL 144
PY+
Sbjct: 63 PYM 65
>sp|Q3A4P1|RL35_PELCD 50S ribosomal protein L35 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rpmI PE=3 SV=1
Length = 65
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT++ +AKRFR TG GKI R +A H+L KK+TKRK L + V+++D N+ +
Sbjct: 3 KIKTNRGAAKRFRKTGSGKIRRNKAFTSHILTKKSTKRKRELRQGTLVAKADQKNISRLI 62
Query: 142 PYL 144
PY+
Sbjct: 63 PYI 65
>sp|P14810|RK35_CYAPA 50S ribosomal protein L35, cyanelle OS=Cyanophora paradoxa GN=rpl35
PE=3 SV=1
Length = 65
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGC 140
YK+KT KA+AKR++ G KI RR+A + HLL KK+T RK +LS++ S D +
Sbjct: 2 YKLKTRKAAAKRYKAVGNKKISRRKAFRSHLLQKKSTNRKRQLSQVVIASPGDTKKIYLM 61
Query: 141 LPYL 144
LPYL
Sbjct: 62 LPYL 65
>sp|A4W9M5|RL35_ENT38 50S ribosomal protein L35 OS=Enterobacter sp. (strain 638) GN=rpmI
PE=3 SV=1
Length = 65
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT + +AKRF+ TGKG +RA +H+L KK TKRK L VS+ D VI CL
Sbjct: 3 KIKTVRGAAKRFKKTGKGGFKHKRANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACL 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q0IE25|RL35_SYNS3 50S ribosomal protein L35 OS=Synechococcus sp. (strain CC9311)
GN=rpmI PE=3 SV=1
Length = 65
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKRF+ TG GK +RRRA HLL K K+K L V R+D + V +
Sbjct: 3 KLKTRKAAAKRFKATGTGKFMRRRAFHNHLLDHKTPKQKRHLKTKAVVDRTDEERVTLMM 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|B7K6S5|RL35_CYAP7 50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 7424)
GN=rpmI PE=3 SV=1
Length = 67
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 82 KMKTHKASAKRFRVTGKG-KILRRRAGKQHLLAKKNTKRK-LRLSKMHEVSRSDYDNVIG 139
K+KT KA+AKRFR TG G KI RR+A K HLL K+ +RK RLS + VS D V
Sbjct: 3 KLKTRKAAAKRFRATGSGNKIFRRKAYKNHLLYHKSAERKRRRLSGLALVSEEDIKEVRL 62
Query: 140 CLPYL 144
LPYL
Sbjct: 63 MLPYL 67
>sp|A8LE32|RL35_FRASN 50S ribosomal protein L35 OS=Frankia sp. (strain EAN1pec) GN=rpmI
PE=3 SV=1
Length = 64
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDN 136
KMKTH + KRFRVTG GKI+RRRA + HLL K ++R RL EV S DN
Sbjct: 3 KMKTHTGTGKRFRVTGTGKIMRRRANRAHLLEHKTSRRTRRL--YDEVPLSSADN 55
>sp|B9MRK1|RL35_CALBD 50S ribosomal protein L35 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpmI PE=3 SV=1
Length = 65
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KTH+ AKR +++G GK LR++AGK HLL+ K+ KRK L K V ++ V L
Sbjct: 3 KLKTHRGLAKRIKISGSGKYLRKKAGKSHLLSGKSRKRKRNLKKTVVVDATNVKAVKKLL 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|B0K3V4|RL35_THEPX 50S ribosomal protein L35 OS=Thermoanaerobacter sp. (strain X514)
GN=rpmI PE=3 SV=1
Length = 65
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKRF+V GK+ R +A K HLL KN KRK RL K + D N+ L
Sbjct: 3 KMKTHRGAAKRFKVLKSGKVKRSKAYKSHLLTHKNAKRKRRLRKATYLVGGDAKNIRRLL 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|A4XKC0|RL35_CALS8 50S ribosomal protein L35 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpmI PE=3 SV=1
Length = 65
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KTH+ AKR +++G GK LR++AGK HLL+ K+ KRK L K V ++ V L
Sbjct: 3 KLKTHRGLAKRIKISGSGKYLRKKAGKSHLLSGKSRKRKRNLKKTVIVDSTNVKAVKKLL 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|A0L4J8|RL35_MAGSM 50S ribosomal protein L35 OS=Magnetococcus sp. (strain MC-1)
GN=rpmI PE=3 SV=1
Length = 65
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KTH+ +AKRF+VTG GKI R +A K H+L KK+ KRK V D V L
Sbjct: 3 KLKTHRGAAKRFKVTGSGKIRRNKAFKSHILTKKSAKRKRGFRAGDLVHERDVAGVRKML 62
Query: 142 PYL 144
PYL
Sbjct: 63 PYL 65
>sp|A0T0F5|RK35_PHATC 50S ribosomal protein L35, chloroplastic OS=Phaeodactylum
tricornutum (strain CCAP 1055/1) GN=rpl35 PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT KA+AKR++ TG LRR A K HLL KK+ K+K +LS+ VSRSD ++ L
Sbjct: 3 KLKTRKAAAKRYKRTGTSNFLRRHAFKGHLLMKKSNKQKRKLSQTICVSRSDIKSIKLML 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|A8MI83|RL35_ALKOO 50S ribosomal protein L35 OS=Alkaliphilus oremlandii (strain
OhILAs) GN=rpmI PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKRF+ TG GKI R +A H+L KK+ KRK +L K V + D + L
Sbjct: 3 KMKTHRGAAKRFKKTGTGKIKRSKAYTSHILTKKSPKRKRKLRKAGIVFKGDQRRIAQLL 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|Q2RHN1|RL35_MOOTA 50S ribosomal protein L35 OS=Moorella thermoacetica (strain ATCC
39073) GN=rpmI PE=3 SV=1
Length = 66
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 37/62 (59%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKR RVT GK+ R RA K HLLA K K+K RL V +D V L
Sbjct: 3 KMKTHRGAAKRLRVTASGKVKRFRAYKSHLLASKTPKQKRRLRHPALVDSTDRRRVARLL 62
Query: 142 PY 143
PY
Sbjct: 63 PY 64
>sp|A9N8K3|RL35_COXBR 50S ribosomal protein L35 OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=rpmI PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT++ + KRF+VTG GKI R + H+L KK+ KRK RL K+HEV+ SD V L
Sbjct: 3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHMLTKKSQKRKRRLRKIHEVAPSDMRAVSEML 62
>sp|Q83C12|RL35_COXBU 50S ribosomal protein L35 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpmI PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT++ + KRF+VTG GKI R + H+L KK+ KRK RL K+HEV+ SD V L
Sbjct: 3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEML 62
>sp|A9KGB9|RL35_COXBN 50S ribosomal protein L35 OS=Coxiella burnetii (strain Dugway
5J108-111) GN=rpmI PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT++ + KRF+VTG GKI R + H+L KK+ KRK RL K+HEV+ SD V L
Sbjct: 3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEML 62
>sp|B6IZF7|RL35_COXB2 50S ribosomal protein L35 OS=Coxiella burnetii (strain CbuG_Q212)
GN=rpmI PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT++ + KRF+VTG GKI R + H+L KK+ KRK RL K+HEV+ SD V L
Sbjct: 3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEML 62
>sp|B6J7Y0|RL35_COXB1 50S ribosomal protein L35 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rpmI PE=3 SV=1
Length = 64
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
K+KT++ + KRF+VTG GKI R + H+L KK+ KRK RL K+HEV+ SD V L
Sbjct: 3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEML 62
>sp|P48959|RL35_SYNY3 50S ribosomal protein L35 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpmI PE=3 SV=1
Length = 67
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 82 KMKTHKASAKRFRVTGKG-KILRRRAGKQHLLAKKNTKRK-LRLSKMHEVSRSDYDNVIG 139
K+KT KA+AKRFR TG G KI+RR+A K HLL K++++K RLS + V +D NV
Sbjct: 3 KLKTRKAAAKRFRPTGSGKKIIRRKAFKNHLLEHKSSEQKHRRLSNLALVHEADEKNVRL 62
Query: 140 CLPYL 144
LPY+
Sbjct: 63 MLPYM 67
>sp|Q4L720|RL35_STAHJ 50S ribosomal protein L35 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpmI PE=3 SV=1
Length = 66
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKR + TG G++ R RA HL A KNTK+K +L K VS+SD V L
Sbjct: 3 KMKTHRGAAKRVKRTGSGQLKRSRAFTSHLFANKNTKQKRKLRKAKLVSKSDMKRVKQLL 62
Query: 142 PYLK 145
Y K
Sbjct: 63 AYKK 66
>sp|Q0SI46|RL35_RHOSR 50S ribosomal protein L35 OS=Rhodococcus sp. (strain RHA1) GN=rpmI
PE=3 SV=1
Length = 64
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSD 133
K KTH +AKRF+V+G GKILR++AG++HLL K TK RL + VS++D
Sbjct: 3 KSKTHSGTAKRFKVSGSGKILRQKAGRRHLLEHKATKVTRRLDGVAVVSKAD 54
>sp|C1AT08|RL35_RHOOB 50S ribosomal protein L35 OS=Rhodococcus opacus (strain B4) GN=rpmI
PE=3 SV=1
Length = 64
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSD 133
K KTH +AKRF+V+G GKILR++AG++HLL K TK RL + VS++D
Sbjct: 3 KSKTHSGTAKRFKVSGSGKILRQKAGRRHLLEHKATKVTRRLDGVAVVSKAD 54
>sp|Q8CS76|RL35_STAES 50S ribosomal protein L35 OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=rpmI PE=3 SV=1
Length = 66
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKR + TG G++ R RA HL A KNTK+K +L K VS+SD V L
Sbjct: 3 KMKTHRGAAKRVKRTGSGQLKRSRAFTSHLFANKNTKQKRQLRKAKLVSKSDMKRVKQLL 62
Query: 142 PYLK 145
Y K
Sbjct: 63 AYKK 66
>sp|Q5HNM4|RL35_STAEQ 50S ribosomal protein L35 OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=rpmI PE=3 SV=1
Length = 66
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCL 141
KMKTH+ +AKR + TG G++ R RA HL A KNTK+K +L K VS+SD V L
Sbjct: 3 KMKTHRGAAKRVKRTGSGQLKRSRAFTSHLFANKNTKQKRQLRKAKLVSKSDMKRVKQLL 62
Query: 142 PYLK 145
Y K
Sbjct: 63 AYKK 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,385,141
Number of Sequences: 539616
Number of extensions: 1545658
Number of successful extensions: 5718
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 4898
Number of HSP's gapped (non-prelim): 794
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)