Query 031865
Match_columns 151
No_of_seqs 163 out of 944
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_5 Ribosomal protein L35; 100.0 4.7E-45 1.6E-49 288.9 0.2 142 4-149 9-158 (159)
2 2zjr_3 50S ribosomal protein L 99.9 3.2E-28 1.1E-32 168.7 5.6 66 80-145 1-66 (66)
3 3v2d_8 50S ribosomal protein L 99.9 4.3E-28 1.5E-32 167.5 5.5 65 80-144 1-65 (65)
4 3r8s_3 50S ribosomal protein L 99.9 1E-27 3.5E-32 165.1 6.5 64 81-144 1-64 (64)
5 3bbn_T Ribosomal protein S20; 39.5 4.5 0.00015 33.0 -0.9 52 40-98 48-99 (202)
6 2con_A RUH-035 protein, NIN on 29.8 19 0.00065 25.1 1.2 19 8-26 29-47 (79)
7 1l8d_A DNA double-strand break 25.5 20 0.00069 24.7 0.7 11 10-20 48-58 (112)
8 2m0e_A Zinc finger and BTB dom 17.2 45 0.0015 15.5 0.8 13 11-23 4-16 (29)
9 3j20_Y 30S ribosomal protein S 16.8 50 0.0017 20.7 1.1 13 6-18 16-28 (50)
10 1ard_A Yeast transcription fac 14.2 59 0.002 15.1 0.8 13 11-23 4-16 (29)
No 1
>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.7e-45 Score=288.85 Aligned_cols=142 Identities=60% Similarity=0.793 Sum_probs=61.9
Q ss_pred ceeeeeeeccCCCCCCcc-ccccccceeeeccccc-cccccccccceec----Cccc--ccccccCCCcccCCCCceEEE
Q 031865 4 MISFNLKFCPLCPSSSSV-RASRGSSLRLALSNKL-NNSLRLNSSYSIS----ASPL--LFRHNNLPTTVTQNRPQTVTV 75 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~----~~~~--~~~~~~~~~~~~~~~~~s~~~ 75 (151)
|+||++.+||| +|+++ |++|+ +++|+++++. +.+|+|+||++|+ +||+ +++.+++.+|+.+ ++.++++
T Consensus 9 ~~~~~~~~~~~--~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~is~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~v 84 (159)
T 3bbo_5 9 TLSFKTPSLSL--SPPSTRCSAAQ-GISLTHFNKQLKSTLNLSSSSSISSSKVQPIVLKNKRISTVDSSVST-SSPSFTV 84 (159)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhcccccc--CCCCcceeecc-cccCchhHHHHhhhhhhhhccccccCCCccccccccccccccCcccc-cccceee
Confidence 89999999998 66666 99999 9999998876 4599999999998 4999 9999999999998 8999999
Q ss_pred eeccccCcccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCeeeccccHHHHHHhCCCcchhcc
Q 031865 76 FAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 149 (151)
Q Consensus 76 ~~~~~~KmKThKgAaKRFKvTgSGKIkR~rAgkrHlltkKS~KrKRrLrk~~~V~~~d~k~IKrlLPY~k~~r~ 149 (151)
++.+|+|||||+||+||||+||+|||+|++||++|++++|+.+|+|+||++.+|+++|+++|++||||++|||+
T Consensus 85 v~~~MPKMKThsgAaKRFKvTgSGKiKR~kAgkrHiLtkKS~KrKR~LRk~~~V~~aD~k~IKrlLPy~kv~r~ 158 (159)
T 3bbo_5 85 FAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158 (159)
T ss_dssp ------CCCCCHHHHTTCCBCSSSCBEEECSSCTTCCSSCCSSCTTSCSEEECCSTHHHHTTTTTTTC------
T ss_pred hhcCCcccccchhhhheeEEcCCccEEeccCCCCCCcCcCCHHHHHhcCCCeeECHHHHHHHHHhcCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ...
Probab=99.94 E-value=3.2e-28 Score=168.74 Aligned_cols=66 Identities=29% Similarity=0.395 Sum_probs=64.4
Q ss_pred ccCcccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCeeeccccHHHHHHhCCCcc
Q 031865 80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYLK 145 (151)
Q Consensus 80 ~~KmKThKgAaKRFKvTgSGKIkR~rAgkrHlltkKS~KrKRrLrk~~~V~~~d~k~IKrlLPY~k 145 (151)
|+|||||+||+|||++||+|||+|++||++|++++||.+++|+|+++.+|+++|+++|++||||++
T Consensus 1 MPKmKT~~gaaKRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~ik~lLp~~~ 66 (66)
T 2zjr_3 1 MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKLMLPRGK 66 (66)
T ss_pred CCCcccchhhhheeEEcCCCcEEeccCCCccCcccCCHHHHHhcCCCeeECHHHHHHHHHhcCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999974
No 3
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Probab=99.94 E-value=4.3e-28 Score=167.54 Aligned_cols=65 Identities=31% Similarity=0.454 Sum_probs=63.2
Q ss_pred ccCcccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCeeeccccHHHHHHhCCCc
Q 031865 80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 144 (151)
Q Consensus 80 ~~KmKThKgAaKRFKvTgSGKIkR~rAgkrHlltkKS~KrKRrLrk~~~V~~~d~k~IKrlLPY~ 144 (151)
|+|||||+||+|||++||+|||+|++||++|++++||.+++|+|+++.+|+++|+++|++||||+
T Consensus 1 MPKmKT~~ga~KRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~vk~lLpy~ 65 (65)
T 3v2d_8 1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPYE 65 (65)
T ss_dssp -CCCCCCHHHHTTEEECTTSCEEEECSSCSSCCTTSCHHHHHHTTSEEECCHHHHHHHHHTCTTC
T ss_pred CCCcccchhhhheeEEcCCCCEEeccCCCCCCccCCCHHHHHhcCCCEEECHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999995
No 4
>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...
Probab=99.94 E-value=1e-27 Score=165.13 Aligned_cols=64 Identities=47% Similarity=0.679 Sum_probs=62.9
Q ss_pred cCcccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCeeeccccHHHHHHhCCCc
Q 031865 81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 144 (151)
Q Consensus 81 ~KmKThKgAaKRFKvTgSGKIkR~rAgkrHlltkKS~KrKRrLrk~~~V~~~d~k~IKrlLPY~ 144 (151)
+|||||+||+|||++||+|||+|++||++|++++||.+++|+|+++.+|+++|+++|++||||+
T Consensus 1 PKmKT~~~a~KRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~vk~lLpy~ 64 (64)
T 3r8s_3 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA 64 (64)
T ss_dssp CCCCCCTTTTTTCEECSSSCEEEECSSCSSSCTTSCHHHHHHTSSEEECCTTTHHHHHHHCTTC
T ss_pred CCCccchhhhheeEEcCCCCEEeccCCCCCCccCCCHHHHHhcCCCEEECHHHHHHHHHHcCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999995
No 5
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=39.49 E-value=4.5 Score=33.02 Aligned_cols=52 Identities=21% Similarity=0.100 Sum_probs=16.4
Q ss_pred cccccccceecCcccccccccCCCcccCCCCceEEEeeccccCcccCcccccceEEccC
Q 031865 40 SLRLNSSYSISASPLLFRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGK 98 (151)
Q Consensus 40 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~KmKThKgAaKRFKvTgS 98 (151)
+|.++.|.++..-|.....+... +. + +. +|..-..||+-++++.||.+.+..
T Consensus 48 ~~~fs~s~~~~~~~~~~~~~~~~---~~-r--~~-~v~~a~~~~aN~KSAkKRiRqneK 99 (202)
T 3bbn_T 48 SLSFSQSVSQCVAFSTGNLWVQK---PM-R--QL-IVCEAAAPTKKADSAAKRARQAEK 99 (202)
T ss_dssp ---------------------------------------CCCSSCCCCCSSHHHHHHHH
T ss_pred ccchhhhcccceeeccccccccc---cc-c--ce-eEEeccccccCchhHHHHHHHHHH
Confidence 66666665444334444222111 12 2 22 444334688999999999988654
No 6
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=29.76 E-value=19 Score=25.08 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.9
Q ss_pred eeeeccCCCCCCccccccc
Q 031865 8 NLKFCPLCPSSSSVRASRG 26 (151)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ 26 (151)
+-.|||-|+..+-.||+..
T Consensus 29 ~k~FCp~CGn~TL~Rvsvs 47 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVT 47 (79)
T ss_dssp SCCSCSSSCCSCCEEEECB
T ss_pred ccccccccCcccceEEEEE
Confidence 4568999999988898874
No 7
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.46 E-value=20 Score=24.72 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=8.2
Q ss_pred eeccCCCCCCc
Q 031865 10 KFCPLCPSSSS 20 (151)
Q Consensus 10 ~~~~~~~~~~~ 20 (151)
..||+|++.-.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 46999987644
No 8
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=17.24 E-value=45 Score=15.45 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=8.9
Q ss_pred eccCCCCCCcccc
Q 031865 11 FCPLCPSSSSVRA 23 (151)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (151)
.|+.|+..+....
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 4 KCPHCDKKFNQVG 16 (29)
T ss_dssp CCSSCCCCCCTTT
T ss_pred cCCCCCcccCCHH
Confidence 4888887766543
No 9
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=16.78 E-value=50 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=9.4
Q ss_pred eeeeeeccCCCCC
Q 031865 6 SFNLKFCPLCPSS 18 (151)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (151)
.....+||.|++.
T Consensus 16 ~~~~k~CP~CG~~ 28 (50)
T 3j20_Y 16 IRKNKFCPRCGPG 28 (50)
T ss_dssp ECSSEECSSSCSS
T ss_pred EEecccCCCCCCc
Confidence 4456789999764
No 10
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=14.18 E-value=59 Score=15.12 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=9.0
Q ss_pred eccCCCCCCcccc
Q 031865 11 FCPLCPSSSSVRA 23 (151)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (151)
.|+.|+..+....
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 1ard_A 4 VCEVCTRAFARQE 16 (29)
T ss_dssp BCTTTCCBCSSHH
T ss_pred ECCCCCcccCCHH
Confidence 4888888766543
Done!