BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031868
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QI5|A Chain A, Crystal Structure Of Human Alkyladenine Dna Glycosylase In
Complex With 3,N4-Ethenocystosine Containing Duplex Dna
pdb|3QI5|B Chain B, Crystal Structure Of Human Alkyladenine Dna Glycosylase In
Complex With 3,N4-Ethenocystosine Containing Duplex Dna
pdb|3UBY|A Chain A, Crystal Structure Of Human Alklyadenine Dna Glycosylase In
A Lower And Higher-Affinity Complex With Dna
pdb|3UBY|B Chain B, Crystal Structure Of Human Alklyadenine Dna Glycosylase In
A Lower And Higher-Affinity Complex With Dna
Length = 219
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
MT L FF A+ LA LG+ L R ++ +I E EAY P D A H R G
Sbjct: 4 MTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++Q R+ L
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
+ L +GP K+ QAL I+ + L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157
>pdb|1BNK|A Chain A, Human 3-Methyladenine Dna Glycosylase Complexed To Dna
Length = 216
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
+T L FF A+ LA LG+ L R ++ +I E EAY P D A H R G
Sbjct: 4 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++ R+QL
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRHVRSQL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
+ L +GP K+ QAL I+ + L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157
>pdb|1F4R|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase
Complexed With 1,N6-Ethenoadenine-Dna
pdb|1F6O|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase
Complexed With Dna
Length = 219
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
+T L FF A+ LA LG+ L R ++ +I E EAY P D A H R G
Sbjct: 4 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++Q R+ L
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
+ L +GP K+ QAL I+ + L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157
>pdb|1EWN|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase
Complexed With 1,N6-Ethenoadenine-Dna
Length = 219
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
+T L FF A+ LA LG+ L R ++ +I E +AY P D A H R G
Sbjct: 4 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++Q R+ L
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
+ L +GP K+ QAL I+ + L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
Length = 461
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 86 EGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPG 145
+ +GA +L+ S +SG T+ +R A+ + V+ G V A +S W+ PLY+P
Sbjct: 371 QDLGANILVFS---MSG--TLARRIAKFRPRGVVYVGTPNVRVARSLSIVWALEPLYIPA 425
Query: 146 E 146
E
Sbjct: 426 E 426
>pdb|1JOB|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P3121
Length = 162
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 LIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWS 137
LIR V L IQQ++ Q V+L PGKV G S W+
Sbjct: 44 LIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVT-ITGTSQNWT 87
>pdb|1F35|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein
pdb|1F35|B Chain B, Crystal Structure Of Murine Olfactory Marker Protein
pdb|1JOD|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P43212
pdb|1JOD|B Chain B, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P43212
Length = 162
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 LIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWS 137
LIR V L IQQ++ Q V+L PGKV G S W+
Sbjct: 44 LIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVT-ITGTSQNWT 87
>pdb|1JYT|A Chain A, Solution Structure Of Olfactory Marker Protein From Rat
pdb|1ZRI|A Chain A, Noe-Based Solution Structure With Dipolar Coupling
Restraints Of Rat Omp (Olfactory Marker Protein)
Length = 163
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 LIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWS 137
L+R V L IQQ++ Q V+L PGKV G S W+
Sbjct: 45 LLRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVT-ITGTSQNWT 88
>pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
Length = 460
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 38 EAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSC 97
E P S+ +GR TAR FG G Y Y + LN++++ E +GA L +C
Sbjct: 144 ETVVPFFSSGYGRVIETARK---FGEGFFGY---NYSTNAALNIISESEVMGADSLTPTC 197
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 92 VLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSN 138
V RS + L + QR Q+ +P++LTG + + LG SN
Sbjct: 256 VTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSN 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,781,718
Number of Sequences: 62578
Number of extensions: 180915
Number of successful extensions: 424
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 13
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)