Query 031868
Match_columns 151
No_of_seqs 119 out of 702
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uby_A DNA-3-methyladenine gly 100.0 1.6E-69 5.5E-74 443.8 14.5 147 2-150 5-166 (219)
2 2xzm_4 40S ribosomal protein S 32.7 23 0.00077 29.5 2.3 46 7-52 30-86 (265)
3 3j20_A 30S ribosomal protein S 21.7 19 0.00064 28.6 -0.1 36 16-52 27-65 (198)
4 1g9g_A Cellulase CEL48F; proce 19.7 26 0.00088 32.3 0.4 11 71-81 148-158 (629)
5 4fus_A RTX toxins and related 19.7 25 0.00086 32.7 0.3 11 71-81 165-175 (695)
6 1l1y_A Cellobiohydrolase; alph 19.1 26 0.00091 32.4 0.3 10 72-81 179-188 (678)
7 3kc2_A Uncharacterized protein 16.3 40 0.0014 28.0 0.8 45 91-135 22-75 (352)
8 1x57_A Endothelial differentia 16.0 1E+02 0.0036 19.4 2.7 20 124-143 59-80 (91)
9 1d3b_A Protein (small nuclear 13.8 2.3E+02 0.0079 18.2 3.9 30 12-41 5-39 (75)
10 2wh7_A HYLP2, hyaluronidase-ph 13.1 39 0.0013 26.2 -0.2 46 50-102 16-61 (178)
No 1
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=100.00 E-value=1.6e-69 Score=443.77 Aligned_cols=147 Identities=36% Similarity=0.533 Sum_probs=135.7
Q ss_pred CCCCccccCCCHHhHHhhhcCCeEEEc---C--eeEEEEeeeccC-CCCCCccCCCC-CCCccccccCCCCeEEEEEecc
Q 031868 2 TILPHHFFQIDALDLAPRLLGKFLRRD---D--VLLQITEVEAYR-PNDSACHGRFG-ITARTAPVFGPGGLAYVYLCYG 74 (151)
Q Consensus 2 ~~L~~~ff~~~~~~vA~~LLG~~Lv~~---~--~~grIVETEAY~-~~D~AsHa~~g-rT~R~~~mf~~~G~~YVY~~YG 74 (151)
++|+++||++|+++||++||||+||++ + ++|||||||||. ++|||||||+| ||+||++||++|||+|||++||
T Consensus 5 ~~L~~~Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G~~D~AsHa~~GrrT~Rn~~MFg~pG~~YVY~~YG 84 (219)
T 3uby_A 5 TRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYG 84 (219)
T ss_dssp CBCCHHHHCSCHHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEECSTTCTTSTTGGGCCCSGGGGGGSSTTBEEEEEETT
T ss_pred ccCCHHHHCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccCCCCccccccCCCCCcccHHhcCCCcEEEEEEecC
Confidence 579999999999999999999999995 2 689999999999 99999999998 6999999999999999999999
Q ss_pred ceeeeeEEeCCCCCccEEEecccccCCCHHHHHHHhcCC--------CCCCccCCChhHHHHHhCCCcccCCCCCCCCCC
Q 031868 75 LHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL--------TEKPVLLTGPGKVGQALGISTEWSNHPLYMPGE 146 (151)
Q Consensus 75 mh~clNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~--------~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~ 146 (151)
|||||||||+. +++||||||+||++|++.|++||+.+ ...++|||||||||||||||+++||+||+.++.
T Consensus 85 mh~clNvv~~~--~g~aVLIRA~EP~~G~e~m~~rR~~~~~~~~~~~~~~~~L~~GPGkL~~ALgI~~~~ng~dL~~~~~ 162 (219)
T 3uby_A 85 MYFCMNISSQG--DGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEA 162 (219)
T ss_dssp TEEEEEEECSS--TTCEEEEEEEEEEECHHHHHHHHHHC--------CCGGGTSSSHHHHHHHTTCCGGGTTCBTTTCSS
T ss_pred cEEEEEEEecC--CCCEEEEeccccCccHHHHHHhcccccccccccccccchhcCCHHHHHHHhCCCHHHCCCccCCCCc
Confidence 99999999964 56899999999999999999999632 234689999999999999999999999998888
Q ss_pred ceee
Q 031868 147 LNCH 150 (151)
Q Consensus 147 l~~~ 150 (151)
|||+
T Consensus 163 l~l~ 166 (219)
T 3uby_A 163 VWLE 166 (219)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 9985
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=32.71 E-value=23 Score=29.48 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=32.9
Q ss_pred cccC-CCHHhHHhhhcCCeEEEc---------CeeEEEEeeeccC-CCCCCccCCCC
Q 031868 7 HFFQ-IDALDLAPRLLGKFLRRD---------DVLLQITEVEAYR-PNDSACHGRFG 52 (151)
Q Consensus 7 ~ff~-~~~~~vA~~LLG~~Lv~~---------~~~grIVETEAY~-~~D~AsHa~~g 52 (151)
+||. ..|......-+|++++.+ .+.||++|+=-+. .+|..+|+|+.
T Consensus 30 ~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK 86 (265)
T 2xzm_4 30 EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRK 86 (265)
T ss_dssp EEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCE
T ss_pred ceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceE
Confidence 4554 223334455689999984 3789999999998 77865788764
No 3
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.74 E-value=19 Score=28.59 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHhhhcCCeEEEc--CeeEEEEeeeccC-CCCCCccCCCC
Q 031868 16 LAPRLLGKFLRRD--DVLLQITEVEAYR-PNDSACHGRFG 52 (151)
Q Consensus 16 vA~~LLG~~Lv~~--~~~grIVETEAY~-~~D~AsHa~~g 52 (151)
....-+|++++.+ .+.||++|+=-+. .+|. +|+|+.
T Consensus 27 F~~~~iG~T~~~~~~~l~GRv~EvsL~DL~~d~-~~~~~K 65 (198)
T 3j20_A 27 FGGVEVGLTPADDPEKVLNRVVEVTLKDVTGDF-TKSHVK 65 (198)
T ss_dssp SSCCCCCEEEEESSSCCSSCEEEECCCSSTTHH-HHHCCC
T ss_pred cCCceeEEEEccCcccccCeEEEEEHHHhcCCh-hhheEE
Confidence 4445589999987 5889999999997 7776 677764
No 4
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=19.74 E-value=26 Score=32.30 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=9.4
Q ss_pred EeccceeeeeE
Q 031868 71 LCYGLHTMLNV 81 (151)
Q Consensus 71 ~~YGmh~clNi 81 (151)
-+|+|||++.|
T Consensus 148 ~~Y~MHWLlDV 158 (629)
T 1g9g_A 148 MLYGMHWILDV 158 (629)
T ss_dssp SCCSCBSEEET
T ss_pred cceeeeeeeec
Confidence 38999999976
No 5
>4fus_A RTX toxins and related Ca2+-binding protein; glycosyl hydrolase, GH48, hydrolase; HET: OHI CBI GOL; 1.75A {Hahella chejuensis}
Probab=19.72 E-value=25 Score=32.75 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=9.5
Q ss_pred EeccceeeeeE
Q 031868 71 LCYGLHTMLNV 81 (151)
Q Consensus 71 ~~YGmh~clNi 81 (151)
-+|+|||++.|
T Consensus 165 ~iY~MHWLlDV 175 (695)
T 4fus_A 165 DVYGMHWLLDM 175 (695)
T ss_dssp CCCSCCSEEET
T ss_pred cceeeeeeeec
Confidence 38999999976
No 6
>1l1y_A Cellobiohydrolase; alpha/alpha barrel; HET: BGC; 2.40A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1l2a_A*
Probab=19.07 E-value=26 Score=32.45 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=9.0
Q ss_pred eccceeeeeE
Q 031868 72 CYGLHTMLNV 81 (151)
Q Consensus 72 ~YGmh~clNi 81 (151)
+|+|||++.|
T Consensus 179 ~Y~MHWL~DV 188 (678)
T 1l1y_A 179 MYLMHWLMDV 188 (678)
T ss_dssp CCCCCSEEET
T ss_pred cceeeeeeec
Confidence 8999999976
No 7
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=16.25 E-value=40 Score=28.00 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=28.9
Q ss_pred EEEecccccCCCHH-HHHHHhcCCCCCCccCCChh--------HHHHHhCCCcc
Q 031868 91 AVLIRSCAPVSGLK-TIQQRRAQLTEKPVLLTGPG--------KVGQALGISTE 135 (151)
Q Consensus 91 aVLIRA~eP~~G~~-~m~~rR~~~~~~~~L~~GPg--------kL~~ALgI~~~ 135 (151)
+||.++-+|+.|.. .+++.|.....-.-+||+++ +|.+.|||+.+
T Consensus 22 Gvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~ 75 (352)
T 3kc2_A 22 GVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS 75 (352)
T ss_dssp TTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCC
T ss_pred CeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCC
Confidence 46788888888864 55555533222346888864 56667999643
No 8
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=16.04 E-value=1e+02 Score=19.43 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.0
Q ss_pred hHHHHHhCCCccc--CCCCCCC
Q 031868 124 GKVGQALGISTEW--SNHPLYM 143 (151)
Q Consensus 124 gkL~~ALgI~~~~--~g~~l~~ 143 (151)
-+||++|+++.++ .|.++..
T Consensus 59 ~~la~~l~v~~~~l~~g~~~~~ 80 (91)
T 1x57_A 59 GKIERAIGLKLRGKDIGKPIEK 80 (91)
T ss_dssp HHHHHHHTBCCSSTTTTCBSSS
T ss_pred HHHHHHHCcCHHHHccCCCCCC
Confidence 4789999998865 6776544
No 9
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=13.81 E-value=2.3e+02 Score=18.16 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=24.8
Q ss_pred CHHhHHhhhcCCeEEEc-----CeeEEEEeeeccC
Q 031868 12 DALDLAPRLLGKFLRRD-----DVLLQITEVEAYR 41 (151)
Q Consensus 12 ~~~~vA~~LLG~~Lv~~-----~~~grIVETEAY~ 41 (151)
.|..+-++++|+.+.-+ ...|.++..+.|+
T Consensus 5 ~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~M 39 (75)
T 1d3b_A 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNM 39 (75)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTC
T ss_pred CHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccce
Confidence 46788899999988654 3789999999998
No 10
>2wh7_A HYLP2, hyaluronidase-phage associated; triple-stranded beta-helix, hyaluronan lyase, phage tail fibre, hydrolase, glycosidase; 1.60A {Streptococcus pyogenes} PDB: 2wb3_A
Probab=13.10 E-value=39 Score=26.17 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=27.6
Q ss_pred CCCCCCccccccCCCCeEEEEEeccceeeeeEEeCCCCCccEEEecccccCCC
Q 031868 50 RFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSG 102 (151)
Q Consensus 50 ~~grT~R~~~mf~~~G~~YVY~~YGmh~clNivt~~~g~~~aVLIRA~eP~~G 102 (151)
|+|+|.-.......|++.- + --.|||++..|| ++|.-||++|-.-|
T Consensus 16 y~g~tnavnivmrqp~tpn----f--ssALNitS~Ne~-gSAMqlrG~EkalG 61 (178)
T 2wh7_A 16 PRGSHNAVNIVMRQPTTPN----F--SSALNITSANEG-GSAMQIRGVEKALG 61 (178)
T ss_dssp -----CCCCCCCCCCSSCC----S--CCSCCCCCCCTT-SCSCCCCCCCSSSC
T ss_pred ccCcccceEEEEecCCCCC----c--ceeeEeeccCCC-CceeEEecchhhcc
Confidence 5566654444444455431 1 247999999887 68999999997655
Done!