Query 031869
Match_columns 151
No_of_seqs 164 out of 909
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06558 V-type ATP synthase s 100.0 2.3E-33 5E-38 219.0 11.3 135 10-147 12-150 (159)
2 PRK06649 V-type ATP synthase s 100.0 3.3E-32 7.1E-37 209.0 11.7 125 14-146 3-136 (143)
3 PRK09621 V-type ATP synthase s 100.0 2.2E-31 4.7E-36 204.4 12.2 128 14-146 4-135 (141)
4 TIGR01100 V_ATP_synt_C vacuola 100.0 4.9E-31 1.1E-35 194.4 11.2 108 13-121 1-108 (108)
5 PRK08344 V-type ATP synthase s 100.0 7.9E-31 1.7E-35 204.4 12.7 134 14-147 2-148 (157)
6 PRK14893 V-type ATP synthase s 100.0 1E-27 2.2E-32 187.6 13.5 137 11-147 7-149 (161)
7 PRK06271 V-type ATP synthase s 99.9 2.9E-27 6.2E-32 192.1 11.6 124 16-147 2-129 (213)
8 KOG0233 Vacuolar H+-ATPase V0 99.9 5E-28 1.1E-32 190.6 4.2 137 11-147 39-184 (196)
9 PRK06271 V-type ATP synthase s 99.9 2.1E-26 4.6E-31 187.1 12.9 130 12-147 70-203 (213)
10 KOG0232 Vacuolar H+-ATPase V0 99.9 6.1E-24 1.3E-28 164.4 8.9 140 7-146 2-145 (156)
11 PF00137 ATP-synt_C: ATP synth 99.7 2.2E-16 4.8E-21 106.6 8.6 66 14-79 1-66 (66)
12 COG0636 AtpE F0F1-type ATP syn 99.6 1.3E-14 2.8E-19 101.7 8.6 68 13-80 7-78 (79)
13 PRK06251 V-type ATP synthase s 99.5 4.4E-14 9.6E-19 103.4 8.7 66 14-79 35-100 (102)
14 PRK06558 V-type ATP synthase s 99.5 4.8E-14 1E-18 110.3 9.2 68 13-80 91-158 (159)
15 CHL00061 atpH ATP synthase CF0 99.5 8.6E-14 1.9E-18 98.1 8.5 66 14-79 8-77 (81)
16 PRK13471 F0F1 ATP synthase sub 99.5 8.8E-14 1.9E-18 98.9 8.4 66 14-79 15-84 (85)
17 PRK14893 V-type ATP synthase s 99.5 1.2E-13 2.7E-18 108.2 9.0 66 14-79 91-156 (161)
18 PRK13469 F0F1 ATP synthase sub 99.5 1.6E-13 3.4E-18 96.3 8.4 67 12-79 8-78 (79)
19 PRK07354 F0F1 ATP synthase sub 99.5 3.3E-13 7.2E-18 95.0 8.5 66 14-79 8-77 (81)
20 PRK06876 F0F1 ATP synthase sub 99.4 8E-13 1.7E-17 92.6 8.6 66 14-79 7-76 (78)
21 PRK08344 V-type ATP synthase s 99.4 3.6E-12 7.7E-17 99.6 9.6 67 13-79 88-155 (157)
22 PRK13468 F0F1 ATP synthase sub 99.4 3.8E-12 8.2E-17 89.9 8.5 67 13-79 7-77 (82)
23 TIGR03322 alt_F1F0_F0_C altern 99.4 4.5E-12 9.7E-17 90.3 8.3 67 13-79 8-78 (86)
24 PRK07558 F0F1 ATP synthase sub 99.3 5.6E-12 1.2E-16 87.5 8.1 65 13-78 5-73 (74)
25 PRK07159 F0F1 ATP synthase sub 99.3 7.3E-12 1.6E-16 91.4 8.1 65 14-79 31-99 (100)
26 PRK08482 F0F1 ATP synthase sub 99.3 9.2E-12 2E-16 91.6 8.4 68 13-80 30-101 (105)
27 PRK09621 V-type ATP synthase s 99.3 1.1E-11 2.3E-16 95.5 8.8 65 12-76 76-140 (141)
28 MTH00222 ATP9 ATP synthase F0 99.3 3.8E-11 8.3E-16 83.9 8.2 66 13-79 7-76 (77)
29 PRK13464 F0F1 ATP synthase sub 99.2 4.1E-11 9E-16 87.5 8.3 67 14-80 14-84 (101)
30 PRK06649 V-type ATP synthase s 99.2 6.7E-11 1.4E-15 91.3 8.2 64 14-77 79-142 (143)
31 PRK13467 F0F1 ATP synthase sub 99.2 1.1E-10 2.4E-15 79.4 7.2 56 21-76 6-65 (66)
32 PRK13466 F0F1 ATP synthase sub 99.2 1.4E-10 3.1E-15 78.9 7.1 57 20-76 5-65 (66)
33 PRK05880 F0F1 ATP synthase sub 99.2 3E-10 6.6E-15 80.1 8.9 66 14-79 8-77 (81)
34 TIGR01260 ATP_synt_c ATP synth 99.1 1.1E-10 2.4E-15 77.5 5.7 53 26-78 1-57 (58)
35 PRK07874 F0F1 ATP synthase sub 99.1 1.7E-10 3.7E-15 81.2 6.5 56 20-75 20-79 (80)
36 COG0636 AtpE F0F1-type ATP syn 98.8 5.9E-09 1.3E-13 73.1 4.3 56 91-146 6-69 (79)
37 PF00137 ATP-synt_C: ATP synth 98.8 8.2E-09 1.8E-13 69.6 3.7 55 93-147 1-59 (66)
38 KOG0232 Vacuolar H+-ATPase V0 98.8 7E-09 1.5E-13 80.8 3.8 71 10-80 82-154 (156)
39 PRK07354 F0F1 ATP synthase sub 98.7 2E-08 4.3E-13 70.7 4.4 58 89-146 4-69 (81)
40 PRK06251 V-type ATP synthase s 98.7 1.8E-08 3.9E-13 73.9 4.1 59 88-146 30-92 (102)
41 PRK13468 F0F1 ATP synthase sub 98.6 3.6E-08 7.7E-13 69.7 4.3 60 87-146 2-69 (82)
42 TIGR03322 alt_F1F0_F0_C altern 98.6 3.7E-08 8.1E-13 70.2 4.1 60 87-146 3-70 (86)
43 KOG0233 Vacuolar H+-ATPase V0 98.6 5.1E-08 1.1E-12 77.6 5.1 69 13-81 125-193 (196)
44 CHL00061 atpH ATP synthase CF0 98.4 3.1E-07 6.7E-12 64.8 4.5 57 90-146 5-69 (81)
45 PRK13469 F0F1 ATP synthase sub 98.3 8.1E-07 1.8E-11 62.3 4.3 57 89-146 6-70 (79)
46 PRK13471 F0F1 ATP synthase sub 98.1 3.2E-06 7E-11 60.2 4.3 58 89-146 11-76 (85)
47 PRK06876 F0F1 ATP synthase sub 98.1 4.6E-06 1E-10 58.5 4.3 57 90-146 4-68 (78)
48 PRK08482 F0F1 ATP synthase sub 97.8 2.6E-05 5.6E-10 57.5 3.8 58 88-145 26-91 (105)
49 PRK05880 F0F1 ATP synthase sub 97.6 0.00012 2.7E-09 51.6 4.6 53 90-142 5-64 (81)
50 PRK07159 F0F1 ATP synthase sub 97.6 7.6E-05 1.6E-09 54.6 3.4 52 93-145 31-90 (100)
51 PRK07558 F0F1 ATP synthase sub 97.6 8.2E-05 1.8E-09 51.7 3.4 54 91-145 4-65 (74)
52 PRK13464 F0F1 ATP synthase sub 97.4 0.00027 5.8E-09 51.9 4.2 55 91-145 12-74 (101)
53 MTH00222 ATP9 ATP synthase F0 97.2 0.00042 9E-09 48.5 3.5 56 89-145 4-67 (77)
54 PRK13466 F0F1 ATP synthase sub 97.0 0.00083 1.8E-08 45.7 3.1 48 98-145 4-59 (66)
55 KOG3025 Mitochondrial F1F0-ATP 96.8 0.0027 5.9E-08 48.0 5.2 65 14-79 68-136 (137)
56 PRK13467 F0F1 ATP synthase sub 96.6 0.002 4.2E-08 43.9 2.9 46 100-145 6-59 (66)
57 TIGR01100 V_ATP_synt_C vacuola 96.5 0.0035 7.5E-08 46.5 3.7 54 93-146 2-59 (108)
58 PRK07874 F0F1 ATP synthase sub 96.3 0.004 8.6E-08 43.9 3.2 55 87-145 12-74 (80)
59 TIGR01260 ATP_synt_c ATP synth 95.7 0.0035 7.7E-08 41.5 0.5 40 106-145 2-49 (58)
60 TIGR02973 nitrate_rd_NapE peri 35.0 94 0.002 19.3 3.9 22 56-77 15-36 (42)
61 TIGR02972 TMAO_torE trimethyla 30.6 1.5E+02 0.0032 18.9 4.4 23 56-78 20-42 (47)
62 PF06796 NapE: Periplasmic nit 30.4 86 0.0019 20.7 3.3 22 56-77 28-49 (56)
63 PF11947 DUF3464: Protein of u 28.1 2.8E+02 0.006 21.7 6.4 59 52-117 62-120 (153)
64 PRK08124 flagellar motor prote 21.6 3E+02 0.0065 23.0 5.9 29 48-79 175-203 (263)
No 1
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=2.3e-33 Score=218.99 Aligned_cols=135 Identities=29% Similarity=0.448 Sum_probs=128.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccch
Q 031869 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (151)
Q Consensus 10 ~~~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~~ 89 (151)
.+++++++|++++++++++||+||+++++++++++.+||||.++|.+++++|||+++|||++++++++++++++ +++
T Consensus 12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~~---~~~ 88 (159)
T PRK06558 12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITPE---LSL 88 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---ccH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998543 788
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHhh
Q 031869 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALIS 147 (151)
Q Consensus 90 ~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~~ 147 (151)
+++|.+|++||++|++++.||++||+++++++++++||||+ .++..+++|+++ ++|+.
T Consensus 89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvv 150 (159)
T PRK06558 89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVV 150 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 788899999999 77764
No 2
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.98 E-value=3.3e-32 Score=208.98 Aligned_cols=125 Identities=25% Similarity=0.277 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccc-----cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY 88 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~-----~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~ 88 (151)
++++|++++++++++||++|++++|+++++++.| |||+|. .++.+.+|.||+|||||++++++. +++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s 74 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS 74 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence 6899999999999999999999999999999998 999999 999999999999999999999986 267
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHh
Q 031869 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALI 146 (151)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~ 146 (151)
++++|.+|++||++|+++++|+++||+++++|+++.+||||+ .+++..++|||+ +++.
T Consensus 75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv 136 (143)
T PRK06649 75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMV 136 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999 899999999999 5654
No 3
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.97 E-value=2.2e-31 Score=204.39 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhHH
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY 93 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~~~~g~ 93 (151)
++++|++++++++++||+||++++|+++.+++.|+||.|.|.++.+++||+|+|||||++++++.+++++ ..+++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~ 78 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999887643 35899
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHh
Q 031869 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALI 146 (151)
Q Consensus 94 ~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~ 146 (151)
..+++||++|++++.||++||+++++++++++||||. .++..+++|+|+ +++.
T Consensus 79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv 135 (141)
T PRK09621 79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFV 135 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 888899999999 5553
No 4
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.97 E-value=4.9e-31 Score=194.41 Aligned_cols=108 Identities=70% Similarity=1.228 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhH
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG 92 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~~~~g 92 (151)
+|+++|++++++|+++||+||++++|.+...+..++||+++|++++++|||+|+|||||++++++.|+++++ +++++++
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g 79 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG 79 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence 478999999999999999999999998888888888999999999999999999999999999999987643 4889999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 031869 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGV 121 (151)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~gaagi 121 (151)
|.+|++||++|+++|+||++||+++|+++
T Consensus 80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g~ 108 (108)
T TIGR01100 80 FIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 99999999999999999999999999874
No 5
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=7.9e-31 Score=204.38 Aligned_cols=134 Identities=22% Similarity=0.235 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--------PKAK 85 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~--------~~~~ 85 (151)
|+++|++++++++++||+||++++|++++++++||||.++|+++++++||+|+|||+|++|++..+.+ ++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999877644321 1134
Q ss_pred ccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCC-Cc---eeehHHHHHHHH-HHHhh
Q 031869 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVF-KI---GMLGITSMETDL-IALIS 147 (151)
Q Consensus 86 ~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p-~l---~~il~~~~E~~a-~~~~~ 147 (151)
++++.++|.++++||++|++++.||++||+++++++++++||| |+ .++..+++|+++ ++++.
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvv 148 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVF 148 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999 88 888899999998 66653
No 6
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.95 E-value=1e-27 Score=187.57 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC--Ccccc
Q 031869 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK--AKSYY 88 (151)
Q Consensus 11 ~~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~--~~~~~ 88 (151)
++-+.++|++++++++++|+++|+++++.+++++..||||.++|+++..+++|+++|||+++++++.++.+.. .+.++
T Consensus 7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~~ 86 (161)
T PRK14893 7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLS 86 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccch
Confidence 4468999999999999999999999999999999999999999999999999999999999999998865332 34578
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHhh
Q 031869 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALIS 147 (151)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~~ 147 (151)
+.++|.++++||++|++++.|++.||+++++++++++||||. .+++.+++|++. |+++.
T Consensus 87 ~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv 149 (161)
T PRK14893 87 VTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLI 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 888899999999 77764
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.95 E-value=2.9e-27 Score=192.14 Aligned_cols=124 Identities=27% Similarity=0.381 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhHHHH
Q 031869 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH 95 (151)
Q Consensus 16 ~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~~~~g~~~ 95 (151)
.+|++++++++++|+++|+++++.+.+++++||||.++|+++..+++|+++|||++++++++++.++ .++|.+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~ 74 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM 74 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999987543 379999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHhh
Q 031869 96 LSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALIS 147 (151)
Q Consensus 96 ~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~~ 147 (151)
+++||++|++++ |+++||+++++++++++||||. .+++..++|+++ +|+|.
T Consensus 75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIv 129 (213)
T PRK06271 75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLV 129 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8999999999999999999998 889999999999 88874
No 8
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.94 E-value=5e-28 Score=190.61 Aligned_cols=137 Identities=28% Similarity=0.535 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----
Q 031869 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK----- 85 (151)
Q Consensus 11 ~~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~----- 85 (151)
+++|+.+|++++++|+.+|++||+-+.|++..++..|.||..+|+|+.++|||+++|||+|++++++.|+++.++
T Consensus 39 p~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~ 118 (196)
T KOG0233|consen 39 PYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYG 118 (196)
T ss_pred hhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhc
Confidence 446999999999999999999999999999999999999999999999999999999999999999999876431
Q ss_pred ccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc----eeehHHHHHHHHHHHhh
Q 031869 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI----GMLGITSMETDLIALIS 147 (151)
Q Consensus 86 ~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l----~~il~~~~E~~a~~~~~ 147 (151)
..++++||.+|++|+++|+|+++||++.|++|++...+|||||.+ -++.+.-....++|||-
T Consensus 119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIv 184 (196)
T KOG0233|consen 119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIV 184 (196)
T ss_pred cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHH
Confidence 247889999999999999999999999999999999999999999 66667778888888874
No 9
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.94 E-value=2.1e-26 Score=187.07 Aligned_cols=130 Identities=24% Similarity=0.333 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhh
Q 031869 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD 91 (151)
Q Consensus 12 ~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~~~~ 91 (151)
..|+++|++++++++++ |++++|+++++++++.+||||.|+|+++.++|||+++|||+|++++++.+.+++ +..+
T Consensus 70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~ 144 (213)
T PRK06271 70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE 144 (213)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence 45899999999999999 789999999999999999999999999999999999999999999999887543 3468
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHhh
Q 031869 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALIS 147 (151)
Q Consensus 92 g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~~ 147 (151)
+|.++++||++|++++ ||+.||+++++++++++||||. .++..+++|+++ ++++.
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvv 203 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLI 203 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999 777799999998 66653
No 10
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.90 E-value=6.1e-24 Score=164.37 Aligned_cols=140 Identities=63% Similarity=0.991 Sum_probs=129.4
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 031869 7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS 86 (151)
Q Consensus 7 ~~~~~~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~ 86 (151)
+|+++||+..+|++.++.++++|+++|+.+.|...+....++||+.+|++++++|++..+|||++++.++..+++++.+.
T Consensus 2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~ 81 (156)
T KOG0232|consen 2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA 81 (156)
T ss_pred CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred cchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc--eeehHHH--HHHHHHHHh
Q 031869 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI--GMLGITS--METDLIALI 146 (151)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l--~~il~~~--~E~~a~~~~ 146 (151)
|++++++.++++|+.+|++++..|+++|++++++++..+||||+ +++|+.+ --..+.|||
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLi 145 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLI 145 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999 7666444 334556666
No 11
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.68 E-value=2.2e-16 Score=106.60 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
|.++|++++++++++|+++|+++++++..++.+||||.++|+++..+|+|+++|||++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999864
No 12
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.57 E-value=1.3e-14 Score=101.72 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccch----hhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~~~~e~~~IYGlIva~li~~~~ 80 (151)
-+.+++++++++++++|+++|+|+++.+..++.+|||| +|+|+++..+|+|+++||++++++++.++.
T Consensus 7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 37899999999999999999999999999999999999 999999999999999999999999998764
No 13
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.53 E-value=4.4e-14 Score=103.37 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
..++|++++++++++|+++|+|+++++++++++||||.++|+++..+|+|+++|||+++++++++.
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999999999999999999999999998754
No 14
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.53 E-value=4.8e-14 Score=110.33 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~ 80 (151)
-+.++++++++|++++++++++|+++++++++.+||||.++|+++..+|+|+++|||||+++++.+++
T Consensus 91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~ 158 (159)
T PRK06558 91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGV 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 38899999999999999999999999999999999999999999999999999999999999988765
No 15
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.51 E-value=8.6e-14 Score=98.08 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhh----hhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
+..++++++++++++|+++|+|++++++.++.+||||.+ +++++..+|.|+++||++++++++.+.
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999965 559999999999999999999998876
No 16
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.51 E-value=8.8e-14 Score=98.85 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
..++|++++++++++|+++|+|.++++++++++||||.+. ++++..+++|+++||++++++++++.
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999876 68999999999999999999998764
No 17
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.49 E-value=1.2e-13 Score=108.22 Aligned_cols=66 Identities=23% Similarity=0.427 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
+.+++++++++++++||++|+++++++++++.+||||.|.|+++..+|+|+++||||+++++++..
T Consensus 91 ~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~ 156 (161)
T PRK14893 91 LVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVF 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998764
No 18
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.49 E-value=1.6e-13 Score=96.28 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 12 ~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
..+.++|+++++ ++++|+++|+|.++++++++.+||||.+. ++++..+|+|+++|||+++++++++.
T Consensus 8 ~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 8 MGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347899999999 99999999999999999999999999654 46899999999999999999998753
No 19
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.46 E-value=3.3e-13 Score=95.04 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhh----hhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
+.++|++++++++++|+++|+|++++++.++++||||.+ +++++..+|+|+++||++++++++.+.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999975 556999999999999999999998776
No 20
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.43 E-value=8e-13 Score=92.59 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
..+++++++++++++|+++|+|+++++++++++||||... ++++..++.|+++||++++++++.+.
T Consensus 7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999754 79999999999999999999998775
No 21
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.37 E-value=3.6e-12 Score=99.65 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRP-ELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P-~~~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
-+.+++++++++++++++++++|+++++.+++..||| |+++|+++..+|+|+++||++++++++..-
T Consensus 88 g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~ 155 (157)
T PRK08344 88 ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3889999999999999999999999999999999999 999999999999999999999999997653
No 22
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.37 E-value=3.8e-12 Score=89.93 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
...++|++++++++++|+++|+|+++.++.++++||||.+. ++++..+|+|+.+||++++++++.+.
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999765 56778999999999999999998775
No 23
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.35 E-value=4.5e-12 Score=90.29 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhh----hhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
.+.++|++++++++++|+++|+|++..++.++++||||.. +++++..++.|+.+||++++++++.+.
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999974 567888999999999999999998876
No 24
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.34 E-value=5.6e-12 Score=87.49 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccch----hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~~~~e~~~IYGlIva~li~~ 78 (151)
...++|+++++ ++++|+++|+|.++.++.++.+|||| +++++++..+|.|+.+||++++++++.+
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999 99999999999999999999999999 6788999999999999999999999865
No 25
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.32 E-value=7.3e-12 Score=91.40 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhh----hhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
+.++|+++++ ++++|+++|+|.++.++.++++||||.. +++++..+++|+++||++++++++.+.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999 9999999999999999999999999974 558899999999999999999998753
No 26
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.32 E-value=9.2e-12 Score=91.63 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTGI 80 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k----~li~~~~~e~~~IYGlIva~li~~~~ 80 (151)
...++|+++++|++++|+++|+|.++.++++++.||||...| +++..++.|+++||++++++++.+..
T Consensus 30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~n 101 (105)
T PRK08482 30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYAN 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999999997654 89999999999999999999998763
No 27
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.31 E-value=1.1e-11 Score=95.53 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031869 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 76 (151)
Q Consensus 12 ~~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li 76 (151)
..+..+++++++++++++|++++|+++++++++.+||||.++|+++..+|.|+.+||++++++++
T Consensus 76 ~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 76 SALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778899999999999999999999999999999999999999999999999999999999986
No 28
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.25 E-value=3.8e-11 Score=83.93 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
...++|+++++ ++++|+++|+|.+..+..++.+||||. ++++++..++.|+++||++++++++.+.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 999999999999999999999999996 5679999999999999999999998764
No 29
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.24 E-value=4.1e-11 Score=87.52 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li~~~~ 80 (151)
...++++++++++++|+++|+|.+.++..++.+||||. ++++++..++.|+.+||++++++++.+..
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~ 84 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999995 56799999999999999999999998874
No 30
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.20 E-value=6.7e-11 Score=91.26 Aligned_cols=64 Identities=11% Similarity=0.204 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 77 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~ 77 (151)
+.+++++++++++++.|++.+|+++.+.+.+..||||.|+|.++..+|+|+.+||+|++++++.
T Consensus 79 ~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 79 WLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999998863
No 31
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.17 E-value=1.1e-10 Score=79.44 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=50.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHH
Q 031869 21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (151)
Q Consensus 21 la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li 76 (151)
++.+++++|+++|+|.+.+++.++++||||. ++.+++..++.|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777899999999999999999999996 5669999999999999999999985
No 32
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.16 E-value=1.4e-10 Score=78.87 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHH
Q 031869 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (151)
Q Consensus 20 ~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li 76 (151)
+++++++++|+++|+|++..+.++++.||||. ++.+++..++.|+++||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999996 5668999999999999999999974
No 33
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.15 E-value=3e-10 Score=80.09 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
..++|++++++++++|+++|+|.+.++++++++||||. ++++++..++.|++.+|.+++.+++.+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999995 5679999999999999998888887655
No 34
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.14 E-value=1.1e-10 Score=77.53 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.5
Q ss_pred HhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 031869 26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST 78 (151)
Q Consensus 26 a~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li~~ 78 (151)
+++|+++|+|.+.++++++++||||. ++++++..+|.|+.+||++++++++++
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999997 788999999999999999999999865
No 35
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.12 E-value=1.7e-10 Score=81.19 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHH
Q 031869 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI 75 (151)
Q Consensus 20 ~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~l 75 (151)
.++.|++++|+++|+|.+..+++++++||||. ++++++..++.|+.+||+++++|+
T Consensus 20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777999999999999999999999996 466899999999999999999986
No 36
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=98.80 E-value=5.9e-09 Score=73.11 Aligned_cols=56 Identities=34% Similarity=0.517 Sum_probs=50.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCC----c---eeehHHHHHHHH-HHHh
Q 031869 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK----I---GMLGITSMETDL-IALI 146 (151)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~----l---~~il~~~~E~~a-~~~~ 146 (151)
+++.++++||++|++++.+|++||+++++++++++|||| + .++..+++|+.. |+|+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lv 69 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLV 69 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999 5 667789999987 5553
No 37
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=98.76 E-value=8.2e-09 Score=69.56 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=51.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHhh
Q 031869 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALIS 147 (151)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~~ 147 (151)
|.++++|+++|++++.|+++||+++++.+.+.+||||+ .++..+++|+.. ++++.
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~ 59 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVV 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 888899999998 77764
No 38
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=98.75 E-value=7e-09 Score=80.77 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=66.3
Q ss_pred chhH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 031869 10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (151)
Q Consensus 10 ~~~~--~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~ 80 (151)
+.++ +..+++++.++++++++++.+++.+++......|||++|..+++..+|+|++++|||+++..+..+.
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 5565 8889999999999999999999999999999999999999999999999999999999999987653
No 39
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=98.70 E-value=2e-08 Score=70.74 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHHh
Q 031869 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IALI 146 (151)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~~ 146 (151)
+.+++.++++|+++|++++.+|++||+++++++.+++||||. -++..+++|+++ |+++
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lv 69 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLV 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999997 366799999998 6655
No 40
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=98.69 E-value=1.8e-08 Score=73.87 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHh
Q 031869 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALI 146 (151)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~ 146 (151)
....+..++++|+++|++++.||++||+++++++++++||||. .++..+++|+++ |+++
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglv 92 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGIL 92 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999998 788899999998 6665
No 41
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=98.64 E-value=3.6e-08 Score=69.71 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=52.3
Q ss_pred cchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc------eeeh-HHHHHHHH-HHHh
Q 031869 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI------GMLG-ITSMETDL-IALI 146 (151)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l------~~il-~~~~E~~a-~~~~ 146 (151)
.++.++..++++|+++|++.+.+|++||+++++++.+++||||. .+++ .+++|+++ +++.
T Consensus 2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alv 69 (82)
T PRK13468 2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFV 69 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999987 3444 89999998 5554
No 42
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=98.63 E-value=3.7e-08 Score=70.19 Aligned_cols=60 Identities=7% Similarity=0.138 Sum_probs=53.2
Q ss_pred cchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc------eeeh-HHHHHHHH-HHHh
Q 031869 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI------GMLG-ITSMETDL-IALI 146 (151)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l------~~il-~~~~E~~a-~~~~ 146 (151)
.++..++..+++|+.+|++.+.+|++||++++..+.+++||||. .|++ .+++|+++ ++++
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alv 70 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFV 70 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999988 5555 89999998 5554
No 43
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=98.62 E-value=5.1e-08 Score=77.58 Aligned_cols=69 Identities=19% Similarity=0.433 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031869 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN 81 (151)
Q Consensus 13 ~~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~~~~e~~~IYGlIva~li~~~~~ 81 (151)
-+..+++++.+|++++-+++.+|+.|+++.-+-++||.+|.|.++..+|+..+|++|+|+++++..|..
T Consensus 125 gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~ 193 (196)
T KOG0233|consen 125 GYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKAS 193 (196)
T ss_pred hHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccc
Confidence 389999999999999999999999999999999999999999999999999999999999999988754
No 44
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=98.43 E-value=3.1e-07 Score=64.79 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHHh
Q 031869 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IALI 146 (151)
Q Consensus 90 ~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~~ 146 (151)
..++.++++|+++|++++.+|++||+++++.+.+++||||. -++..+++|+.+ |+|+
T Consensus 5 ~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lv 69 (81)
T CHL00061 5 ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLV 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999986 356688999877 5554
No 45
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=98.31 E-value=8.1e-07 Score=62.30 Aligned_cols=57 Identities=28% Similarity=0.438 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHHh
Q 031869 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IALI 146 (151)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~~ 146 (151)
+..++.++++|+++ ++++.+|++||+++++.+.+++||||. -++..+++|+.. |+++
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glv 70 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLV 70 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999 999999999999999999999999986 345588999987 6655
No 46
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=98.14 E-value=3.2e-06 Score=60.15 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-e------eehHHHHHHHH-HHHh
Q 031869 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-G------MLGITSMETDL-IALI 146 (151)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-~------~il~~~~E~~a-~~~~ 146 (151)
...+..++++|+.+|++.+.+|+++|.++++.+.+.+||||. + ++..+++|+.+ |++.
T Consensus 11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lv 76 (85)
T PRK13471 11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLL 76 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999998 3 77899999976 5543
No 47
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=98.09 E-value=4.6e-06 Score=58.47 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHHh
Q 031869 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IALI 146 (151)
Q Consensus 90 ~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~~ 146 (151)
-.+..++++|+.+|++.+.+|++||++++..+.+++||||. -++..+++|+.+ |++.
T Consensus 4 ~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lv 68 (78)
T PRK06876 4 IMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVG 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999988 455688999877 5543
No 48
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=97.79 E-value=2.6e-05 Score=57.53 Aligned_cols=58 Identities=19% Similarity=0.376 Sum_probs=50.6
Q ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
+...+..++++|+.+|++.+.+|++||++.+..+.+++||||. -++-.+++|+.+ |++
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~al 91 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYAL 91 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999 345588899876 444
No 49
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=97.57 E-value=0.00012 Score=51.63 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH
Q 031869 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL 142 (151)
Q Consensus 90 ~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a 142 (151)
..+..++++|+.+|++.+.+|+++|.+.+..+.+++||||. -++-.++.|...
T Consensus 5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~ 64 (81)
T PRK05880 5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAY 64 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999998 333377777653
No 50
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=97.56 E-value=7.6e-05 Score=54.65 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=45.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
+..+++|+.+ ++.+.+|++||++++..+.+++||||. -++..+++|+.+ |++
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~l 90 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYAL 90 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999 999999999999999999999999987 344578999877 554
No 51
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=97.55 E-value=8.2e-05 Score=51.68 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=46.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
++...+++|+.+ ++.+.+|++||++.+..+.+++||||. -++-.++.|+.+ |++
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~al 65 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSF 65 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999 999999999999999999999999996 455588889876 444
No 52
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=97.36 E-value=0.00027 Score=51.88 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=47.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
.+...+++|+.+|++.+.+|+++|.+.+..+.+.+||||. -++-.++.|..+ |++
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~al 74 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISI 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999998 344477888766 444
No 53
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=97.20 E-value=0.00042 Score=48.53 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
..++...+++|+.+ ++.+.+|+.+|.+.+..+.+.+||||. -++-.+++|..+ |++
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~l 67 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCL 67 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999 999999999999999999999999998 444478888765 443
No 54
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=96.95 E-value=0.00083 Score=45.74 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 98 SGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 98 aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
.++.+|++.+.+|+.||.+.+..+.+.+||||. -++-.+++|..+ |++
T Consensus 4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~al 59 (66)
T PRK13466 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTL 59 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999998 344477888766 444
No 55
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=96.83 E-value=0.0027 Score=47.96 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 14 ~~~lGa~la~gla~iGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
--++|++.+. ....|++.|+|..=.+-+-..+|||++ |.-.++..++.|+.|+|-+.++|+++..
T Consensus 68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 5678888776 566788888888888889999999985 5667889999999999999999998763
No 56
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=96.61 E-value=0.002 Score=43.93 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 100 LACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 100 L~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
+..|++.+.+|+++|.+.+..+.+.+||||. -++-.++.|..+ |++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~l 59 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTL 59 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999998 334477888776 444
No 57
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=96.47 E-value=0.0035 Score=46.49 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc---eeehHHHHHHHH-HHHh
Q 031869 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI---GMLGITSMETDL-IALI 146 (151)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l---~~il~~~~E~~a-~~~~ 146 (151)
|..+++.++++|+++.|++..+++|.+=..+-.++||. .+|+.+++|+.+ +|+|
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlI 59 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLV 59 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999994444444445887 999999999998 7776
No 58
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=96.35 E-value=0.004 Score=43.93 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=42.3
Q ss_pred cchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
.+..++...+++|+ +.+.+|+++|.+....+.+.+||||. -++-.++.|..+ |++
T Consensus 12 ~~~~~~~~~ig~Gl----aaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~l 74 (80)
T PRK07874 12 ETTFTGLGAVGYGL----AAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGL 74 (80)
T ss_pred HHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566776666654 55789999999999999999999998 344478888776 444
No 59
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=95.69 E-value=0.0035 Score=41.53 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhhhhhcccccCCCc-------eeehHHHHHHHH-HHH
Q 031869 106 GLSAGMAIGIVGDAGVRHPSFVFKI-------GMLGITSMETDL-IAL 145 (151)
Q Consensus 106 ~l~Sgi~qGi~gaagi~a~a~~p~l-------~~il~~~~E~~a-~~~ 145 (151)
++.+|+++|.+.+..+.+++||||. .++-.+++|+.+ +++
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~l 49 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAV 49 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999988 555688999877 444
No 60
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=35.02 E-value=94 Score=19.34 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031869 56 IVPVVMAGVLGIYGLIIAVIIS 77 (151)
Q Consensus 56 li~~~~~e~~~IYGlIva~li~ 77 (151)
+.++.....++-||+++.+.-.
T Consensus 15 l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 15 IWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556688999999988744
No 61
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=30.63 E-value=1.5e+02 Score=18.91 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 031869 56 IVPVVMAGVLGIYGLIIAVIIST 78 (151)
Q Consensus 56 li~~~~~e~~~IYGlIva~li~~ 78 (151)
+.++.....++-||+++.+.-..
T Consensus 20 l~PiLsV~~Vg~YGF~vWm~Q~~ 42 (47)
T TIGR02972 20 LFPILSVAGIGGYGFIIWMIQAF 42 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566888999999987543
No 62
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=30.42 E-value=86 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031869 56 IVPVVMAGVLGIYGLIIAVIIS 77 (151)
Q Consensus 56 li~~~~~e~~~IYGlIva~li~ 77 (151)
+.++.....++-|||++.++-.
T Consensus 28 l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 28 LFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556788999999998755
No 63
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=28.11 E-value=2.8e+02 Score=21.73 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 031869 52 VMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVG 117 (151)
Q Consensus 52 ~~k~li~~~~~e~~~IYGlIva~li~~~~~~~~~~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~g 117 (151)
..++.+....|-.+|+=-|++..++..+-.-+ +-....++...++-|++-+ |++-|+..
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~d-----vP~~~~~~~S~~~Fg~gll--GisYGilS 120 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYLKSRQIVD-----VPPWAVLLVSLVFFGLGLL--GISYGILS 120 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHhccccc-----cCchHHHHHHHHHHHHHHH--hhhhhhcc
Confidence 45788888888888888888877776653222 1122333444444444444 66666554
No 64
>PRK08124 flagellar motor protein MotA; Validated
Probab=21.61 E-value=3e+02 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.128 Sum_probs=18.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 031869 48 RPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (151)
Q Consensus 48 ~P~~~~k~li~~~~~e~~~IYGlIva~li~~~ 79 (151)
+|+..+.. ++-+=.-..||+++|.++...
T Consensus 175 ~p~~lg~g---Ia~ALitT~yGl~vA~~~~~P 203 (263)
T PRK08124 175 DIEKLGHA---ISAAFVATLLGIFTGYVLWHP 203 (263)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 57654433 233335678999999886553
Done!