Query 031870
Match_columns 151
No_of_seqs 122 out of 650
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00917 PG-PI_TP The phosphati 100.0 5.5E-31 1.2E-35 184.0 16.1 116 23-140 1-122 (122)
2 KOG4680 Uncharacterized conser 100.0 7.6E-31 1.6E-35 181.9 15.1 132 16-149 20-151 (153)
3 cd00916 Npc2_like Niemann-Pick 100.0 1.1E-29 2.3E-34 177.7 13.0 118 23-140 1-123 (123)
4 cd00918 Der-p2_like Several gr 100.0 4.9E-29 1.1E-33 173.3 12.2 117 23-142 1-120 (120)
5 KOG4063 Major epididymal secre 100.0 2E-28 4.3E-33 172.4 13.6 144 1-144 1-158 (158)
6 smart00737 ML Domain involved 100.0 4.9E-28 1.1E-32 167.8 14.9 113 23-140 1-118 (118)
7 PF02221 E1_DerP2_DerF2: ML do 100.0 9.6E-28 2.1E-32 169.1 13.9 121 20-142 1-134 (134)
8 cd00912 ML The ML (MD-2-relate 99.9 6E-27 1.3E-31 164.5 13.4 117 23-139 1-126 (127)
9 cd00915 MD-1_MD-2 MD-1 and MD- 99.9 7.8E-22 1.7E-26 138.0 12.8 112 21-140 11-130 (130)
10 cd00258 GM2-AP GM2 activator p 99.9 4.1E-20 8.9E-25 132.8 14.7 121 20-144 2-161 (162)
11 PF14558 TRP_N: ML-like domain 98.8 8.4E-08 1.8E-12 68.5 11.4 120 20-145 4-139 (141)
12 PF15418 DUF4625: Domain of un 97.6 0.0044 9.4E-08 43.8 12.9 93 48-142 32-131 (132)
13 smart00697 DM8 Repeats found i 96.7 0.011 2.5E-07 38.4 7.1 36 93-128 40-79 (93)
14 PF14524 Wzt_C: Wzt C-terminal 96.4 0.053 1.1E-06 37.5 9.5 91 34-126 11-108 (142)
15 PF07705 CARDB: CARDB; InterP 95.6 0.22 4.7E-06 32.2 8.8 84 35-130 3-87 (101)
16 PF10633 NPCBM_assoc: NPCBM-as 95.3 0.11 2.4E-06 32.8 6.5 72 49-126 2-76 (78)
17 smart00675 DM11 Domains in hyp 95.3 0.43 9.4E-06 34.9 10.3 107 20-130 10-161 (164)
18 PF06477 DUF1091: Protein of u 94.8 0.043 9.2E-07 34.9 3.4 28 94-121 50-81 (81)
19 PF02115 Rho_GDI: RHO protein 94.3 0.68 1.5E-05 35.0 9.5 94 48-144 103-199 (200)
20 PF04234 CopC: CopC domain; I 94.0 0.37 8.1E-06 31.8 6.8 29 105-133 60-88 (97)
21 PRK10301 hypothetical protein; 92.5 0.38 8.2E-06 33.5 5.1 28 106-133 88-115 (124)
22 TIGR02186 alph_Pro_TM conserve 90.4 1.2 2.6E-05 35.0 6.4 40 104-144 182-221 (261)
23 PF09608 Alph_Pro_TM: Putative 89.1 1.7 3.7E-05 33.6 6.4 41 103-144 156-196 (236)
24 PLN00044 multi-copper oxidase- 87.7 2.9 6.3E-05 36.7 7.6 17 92-108 102-119 (596)
25 PF00339 Arrestin_N: Arrestin 87.7 0.86 1.9E-05 31.5 3.7 32 94-125 87-126 (149)
26 KOG1263 Multicopper oxidases [ 86.8 2.6 5.5E-05 36.8 6.7 34 75-109 83-119 (563)
27 KOG3205 Rho GDP-dissociation i 86.2 12 0.00026 28.0 10.2 92 48-144 101-197 (200)
28 PF00868 Transglut_N: Transglu 85.0 6.1 0.00013 27.1 6.7 78 48-126 29-117 (118)
29 cd00912 ML The ML (MD-2-relate 84.8 3.2 6.9E-05 28.5 5.4 40 86-125 15-55 (127)
30 PF13754 Big_3_4: Bacterial Ig 84.4 3.1 6.6E-05 24.4 4.4 35 110-145 18-52 (54)
31 PF07495 Y_Y_Y: Y_Y_Y domain; 83.8 1.8 4E-05 25.8 3.4 18 114-131 36-53 (66)
32 PF02221 E1_DerP2_DerF2: ML do 82.9 3.1 6.8E-05 28.4 4.7 33 44-76 84-116 (134)
33 smart00737 ML Domain involved 82.5 3.5 7.6E-05 27.8 4.7 32 45-76 71-102 (118)
34 PLN02991 oxidoreductase 79.8 6.7 0.00015 34.1 6.5 17 92-108 101-118 (543)
35 PLN02168 copper ion binding / 79.3 9.8 0.00021 33.1 7.3 16 93-108 100-116 (545)
36 cd00918 Der-p2_like Several gr 78.4 5.4 0.00012 27.5 4.5 31 44-74 71-101 (120)
37 cd00916 Npc2_like Niemann-Pick 77.8 5.7 0.00012 27.4 4.6 31 44-74 75-105 (123)
38 PLN02354 copper ion binding / 77.2 7.6 0.00016 33.8 6.1 16 93-108 101-117 (552)
39 PLN02835 oxidoreductase 76.6 11 0.00023 32.8 6.8 16 93-108 103-119 (539)
40 COG2372 CopC Uncharacterized p 76.6 5.8 0.00013 27.8 4.2 29 105-133 88-116 (127)
41 PF03443 Glyco_hydro_61: Glyco 76.5 12 0.00025 28.6 6.3 42 105-146 137-186 (218)
42 PF13752 DUF4165: Domain of un 76.0 19 0.00041 25.1 6.6 46 99-145 77-122 (124)
43 PF01835 A2M_N: MG2 domain; I 75.5 18 0.00039 23.3 6.4 71 49-127 12-87 (99)
44 PF13002 LDB19: Arrestin_N ter 74.4 15 0.00033 27.5 6.3 52 94-145 44-114 (191)
45 COG2967 ApaG Uncharacterized p 73.3 6.7 0.00015 27.2 3.8 35 97-133 75-110 (126)
46 PF15432 Sec-ASP3: Accessory S 73.2 13 0.00028 26.0 5.4 34 97-133 50-84 (128)
47 PF04729 ASF1_hist_chap: ASF1 72.2 8.4 0.00018 27.9 4.3 101 35-137 3-110 (154)
48 PRK05461 apaG CO2+/MG2+ efflux 71.6 15 0.00033 25.7 5.4 48 94-143 72-121 (127)
49 COG1470 Predicted membrane pro 70.1 71 0.0015 27.5 10.2 32 97-128 438-470 (513)
50 PF02494 HYR: HYR domain; Int 68.7 8.8 0.00019 24.1 3.5 24 113-136 53-76 (81)
51 PF03067 Chitin_bind_3: Chitin 67.0 28 0.00061 25.3 6.4 88 49-139 82-183 (183)
52 PLN02792 oxidoreductase 66.9 9.2 0.0002 33.2 4.2 32 77-108 73-106 (536)
53 PF02402 Lysis_col: Lysis prot 66.8 11 0.00023 21.4 3.1 28 1-28 1-29 (46)
54 PF13750 Big_3_3: Bacterial Ig 65.3 14 0.0003 26.7 4.3 35 98-132 104-138 (158)
55 TIGR03711 acc_sec_asp3 accesso 64.0 20 0.00043 25.4 4.8 38 93-133 56-95 (135)
56 cd00917 PG-PI_TP The phosphati 63.8 24 0.00052 24.1 5.2 32 93-124 20-53 (122)
57 KOG3780 Thioredoxin binding pr 63.2 13 0.00028 30.6 4.4 30 97-126 102-139 (427)
58 PF08138 Sex_peptide: Sex pept 62.4 2.4 5.3E-05 25.0 -0.1 20 1-21 1-20 (56)
59 PRK12633 flgD flagellar basal 62.2 13 0.00029 28.5 4.0 21 113-133 169-189 (230)
60 PF08139 LPAM_1: Prokaryotic m 62.1 2.9 6.3E-05 20.8 0.2 15 1-15 7-21 (25)
61 PRK12634 flgD flagellar basal 60.8 16 0.00035 27.9 4.2 20 113-132 162-181 (221)
62 PF06775 Seipin: Putative adip 60.8 38 0.00081 25.3 6.1 38 97-134 53-94 (199)
63 PF07732 Cu-oxidase_3: Multico 59.9 7.8 0.00017 26.4 2.1 24 92-119 69-93 (117)
64 PLN02604 oxidoreductase 59.5 51 0.0011 28.8 7.5 16 93-108 100-116 (566)
65 COG1952 SecB Preprotein transl 57.8 16 0.00035 26.5 3.5 42 54-96 60-105 (157)
66 PF12984 DUF3868: Domain of un 57.6 54 0.0012 22.3 6.0 26 34-63 28-53 (115)
67 TIGR01480 copper_res_A copper- 56.2 20 0.00044 31.5 4.5 16 93-108 118-134 (587)
68 PF12245 Big_3_2: Bacterial Ig 55.5 42 0.00091 19.9 5.8 24 110-133 16-39 (60)
69 PRK12812 flgD flagellar basal 54.2 21 0.00046 28.1 3.9 21 113-133 181-201 (259)
70 PF11797 DUF3324: Protein of u 53.4 59 0.0013 22.8 5.8 43 98-144 87-131 (140)
71 PF12690 BsuPI: Intracellular 53.2 18 0.0004 23.1 2.9 26 97-123 56-82 (82)
72 PF10633 NPCBM_assoc: NPCBM-as 50.4 58 0.0013 20.0 5.1 27 47-73 45-71 (78)
73 PF09551 Spore_II_R: Stage II 46.8 42 0.00092 23.6 4.1 26 114-139 93-119 (130)
74 PF04379 DUF525: Protein of un 46.8 37 0.00081 22.1 3.6 31 97-129 59-90 (90)
75 TIGR02837 spore_II_R stage II 44.6 40 0.00088 24.8 3.8 42 98-139 102-154 (168)
76 KOG3265 Histone chaperone invo 44.4 1.4E+02 0.0031 23.2 6.8 79 35-116 3-86 (250)
77 PF13860 FlgD_ig: FlgD Ig-like 44.2 20 0.00043 22.6 2.0 67 53-128 11-80 (81)
78 KOG4063 Major epididymal secre 44.1 57 0.0012 23.6 4.4 30 45-74 107-136 (158)
79 PF10029 DUF2271: Predicted pe 44.0 1E+02 0.0022 21.8 5.8 44 97-142 74-120 (139)
80 PF03170 BcsB: Bacterial cellu 43.1 1.5E+02 0.0033 25.9 7.9 75 50-136 42-117 (605)
81 PF11912 DUF3430: Protein of u 42.8 15 0.00032 27.3 1.4 25 95-119 110-134 (212)
82 COG5137 Histone chaperone invo 42.1 1.3E+02 0.0029 23.2 6.4 102 35-137 3-110 (279)
83 cd00146 PKD polycystic kidney 41.5 76 0.0016 19.3 4.4 18 115-132 55-72 (81)
84 PF05404 TRAP-delta: Transloco 41.5 1.4E+02 0.0031 21.9 8.4 25 104-130 80-105 (167)
85 PF02018 CBM_4_9: Carbohydrate 40.9 69 0.0015 21.0 4.5 31 95-130 56-87 (131)
86 TIGR03390 ascorbOXfungal L-asc 39.6 49 0.0011 28.7 4.3 16 93-108 84-100 (538)
87 COG5294 Uncharacterized protei 39.1 40 0.00086 23.1 2.9 38 1-40 1-38 (113)
88 KOG1903 Cell cycle-associated 38.6 19 0.00041 26.5 1.3 30 78-107 70-102 (217)
89 PF00801 PKD: PKD domain; Int 38.6 45 0.00098 19.8 2.9 16 116-131 51-66 (69)
90 PRK09810 entericidin A; Provis 38.5 15 0.00032 20.5 0.6 9 1-9 2-10 (41)
91 PRK13031 preprotein translocas 37.9 65 0.0014 23.2 4.0 44 53-96 54-102 (149)
92 TIGR03786 strep_pil_rpt strept 37.6 95 0.0021 18.8 5.6 34 98-131 8-46 (64)
93 cd00915 MD-1_MD-2 MD-1 and MD- 36.9 58 0.0013 22.9 3.6 30 44-74 81-112 (130)
94 PF13473 Cupredoxin_1: Cupredo 35.4 28 0.0006 22.8 1.7 28 32-59 21-50 (104)
95 PF14734 DUF4469: Domain of un 34.9 68 0.0015 21.5 3.5 22 105-126 65-86 (102)
96 PRK06655 flgD flagellar basal 34.7 65 0.0014 24.7 3.8 13 114-126 167-179 (225)
97 cd02859 AMPKbeta_GBD_like AMP- 32.4 1.3E+02 0.0028 18.7 4.4 12 70-81 14-25 (79)
98 PF10182 Flo11: Flo11 domain; 32.3 1.9E+02 0.0041 20.7 6.0 33 32-69 18-50 (152)
99 TIGR03516 ppisom_GldI peptidyl 32.3 32 0.00068 25.3 1.7 15 48-62 86-100 (177)
100 TIGR03389 laccase laccase, pla 32.1 79 0.0017 27.4 4.3 16 93-108 78-94 (539)
101 TIGR02588 conserved hypothetic 31.9 1.8E+02 0.0038 20.3 5.2 30 116-145 48-77 (122)
102 PRK13792 lysozyme inhibitor; P 31.8 94 0.002 21.8 3.9 8 130-137 119-126 (127)
103 PF07263 DMP1: Dentin matrix p 31.4 28 0.00062 29.8 1.5 15 1-15 1-15 (514)
104 PRK13691 (3R)-hydroxyacyl-ACP 31.2 2E+02 0.0044 20.7 5.9 40 94-133 94-135 (166)
105 PF11106 YjbE: Exopolysacchari 30.7 28 0.00061 22.2 1.0 16 1-16 1-16 (80)
106 PLN02191 L-ascorbate oxidase 30.3 72 0.0016 28.0 3.8 16 93-108 99-115 (574)
107 PF08737 Rgp1: Rgp1; InterPro 29.2 2.6E+02 0.0055 23.5 6.8 48 96-143 114-172 (415)
108 PF11614 FixG_C: IG-like fold 28.8 1.8E+02 0.0039 19.3 5.6 37 97-133 70-108 (118)
109 PRK09934 fimbrial-like adhesin 28.3 89 0.0019 22.5 3.5 16 1-16 1-16 (171)
110 PRK10081 entericidin B membran 28.2 22 0.00048 20.6 0.2 9 1-9 2-10 (48)
111 PF11777 DUF3316: Protein of u 28.1 31 0.00067 23.4 1.0 13 1-13 1-13 (114)
112 PF05452 Clavanin: Clavanin; 27.9 36 0.00079 21.2 1.1 12 1-12 1-12 (80)
113 cd02861 E_set_proteins_like E 27.7 1.2E+02 0.0027 18.7 3.7 12 96-107 43-54 (82)
114 PF09912 DUF2141: Uncharacteri 27.1 77 0.0017 21.3 2.8 33 93-131 34-66 (112)
115 PF10651 DUF2479: Domain of un 25.6 1.3E+02 0.0029 21.6 4.1 42 99-144 81-125 (170)
116 PRK10965 multicopper oxidase; 25.6 94 0.002 26.9 3.7 16 93-108 116-132 (523)
117 smart00060 FN3 Fibronectin typ 25.1 1.3E+02 0.0029 16.6 3.8 25 106-130 57-81 (83)
118 PF03170 BcsB: Bacterial cellu 25.0 2.4E+02 0.0052 24.7 6.1 69 49-125 339-407 (605)
119 PF00041 fn3: Fibronectin type 24.8 1.3E+02 0.0027 17.8 3.3 22 109-130 59-80 (85)
120 PF10989 DUF2808: Protein of u 24.7 1.9E+02 0.0042 20.3 4.6 32 94-127 96-129 (146)
121 COG5510 Predicted small secret 24.6 38 0.00082 19.2 0.7 9 1-9 2-10 (44)
122 cd03452 MaoC_C MaoC_C The C-t 24.2 2.4E+02 0.0053 19.3 6.6 44 94-137 86-133 (142)
123 TIGR02738 TrbB type-F conjugat 24.1 36 0.00077 24.4 0.7 23 1-23 1-23 (153)
124 PRK10449 heat-inducible protei 23.7 47 0.001 23.3 1.3 16 1-16 1-16 (140)
125 PF07610 DUF1573: Protein of u 23.6 1.4E+02 0.0031 16.4 4.0 27 34-60 10-45 (45)
126 PF10969 DUF2771: Protein of u 23.5 2.3E+02 0.0049 20.5 4.9 18 104-121 77-94 (161)
127 PF03896 TRAP_alpha: Transloco 22.8 4E+02 0.0087 21.3 10.8 49 95-143 144-197 (285)
128 PRK12618 flgA flagellar basal 22.8 32 0.0007 24.4 0.3 16 1-16 1-16 (141)
129 PF02521 HP_OMP_2: Putative ou 22.7 3E+02 0.0064 23.7 6.0 28 1-28 1-28 (458)
130 PRK12813 flgD flagellar basal 22.3 1.2E+02 0.0027 23.2 3.4 15 113-127 161-175 (223)
131 KOG4680 Uncharacterized conser 22.1 1.5E+02 0.0033 21.2 3.5 31 94-124 47-78 (153)
132 TIGR03769 P_ac_wall_RPT actino 22.0 1.5E+02 0.0033 16.2 2.9 17 115-131 11-29 (41)
133 PF11033 ComJ: Competence prot 22.0 1.9E+02 0.0041 20.2 4.0 16 93-108 90-105 (125)
134 PF11714 Inhibitor_I53: Thromb 21.3 54 0.0012 20.5 1.0 15 1-16 1-15 (78)
135 PRK13692 (3R)-hydroxyacyl-ACP 21.1 3.2E+02 0.0068 19.5 8.0 44 95-139 95-141 (159)
136 PRK15346 outer membrane secret 21.1 52 0.0011 28.2 1.2 25 1-25 1-28 (499)
137 smart00089 PKD Repeats in poly 20.9 2E+02 0.0044 17.2 4.6 15 116-130 54-68 (79)
138 PF05345 He_PIG: Putative Ig d 20.8 1.8E+02 0.0038 16.5 4.1 16 115-130 34-49 (49)
139 TIGR00809 secB protein-export 20.4 1.1E+02 0.0024 21.8 2.6 43 54-96 52-99 (140)
140 TIGR03503 conserved hypothetic 20.3 5.1E+02 0.011 21.6 9.8 46 23-68 73-123 (374)
141 cd03453 SAV4209_like SAV4209_l 20.2 2.8E+02 0.0061 18.5 5.9 38 95-132 79-118 (127)
142 PF03404 Mo-co_dimer: Mo-co ox 20.0 2.3E+02 0.0049 19.7 4.1 29 102-132 78-106 (131)
No 1
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=99.98 E-value=5.5e-31 Score=183.99 Aligned_cols=116 Identities=37% Similarity=0.698 Sum_probs=108.5
Q ss_pred eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcC-----CCC
Q 031870 23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEV-----SCP 96 (151)
Q Consensus 23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~-----~CP 96 (151)
|++|++ +..+.++|++++++|||++||++++|+++|++++++++| ++.+.+++++++++..+.|+|+.. +||
T Consensus 1 ~~~C~~--~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CP 78 (122)
T cd00917 1 FEYCDK--GGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCP 78 (122)
T ss_pred CccCCC--CCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCC
Confidence 899987 445899999999999999999999999999999999997 899999999999998889999963 899
Q ss_pred CCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870 97 IEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 140 (151)
Q Consensus 97 v~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 140 (151)
+++|++.+..++.||+++|+|+|+++|+++|++++.++|++|++
T Consensus 79 i~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~Ci~~~~ 122 (122)
T cd00917 79 IEPGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCLSFSV 122 (122)
T ss_pred cCCCcEEEEEEeeCCCCCCCceEEEEEEEECCCCCEEEEEEeeC
Confidence 99998779999999999999999999999999999999999975
No 2
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=99.97 E-value=7.6e-31 Score=181.88 Aligned_cols=132 Identities=48% Similarity=0.924 Sum_probs=124.9
Q ss_pred hcccccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCC
Q 031870 16 SSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSC 95 (151)
Q Consensus 16 ~~~~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~C 95 (151)
+..++.++.+|..+ ..+.|+|+.++++|+|+.+|+++++++++...+++..|+..++++|+||++..++.|+|+.++|
T Consensus 20 ~i~~a~~~~yCd~~--d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsC 97 (153)
T KOG4680|consen 20 PINGATPVHYCDIN--DEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSC 97 (153)
T ss_pred cccCCCcchhhhhc--ccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccC
Confidence 46778999999883 4579999999999999999999999999999999999997799999999999999999999999
Q ss_pred CCCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEccccccc
Q 031870 96 PIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVS 149 (151)
Q Consensus 96 Pv~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~~~~~ 149 (151)
|+++|.|....++.+|...|+|+|.++++++|++|++++|++|.|+|.+..+|-
T Consensus 98 PVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTCisfsf~i~~g~~v~ 151 (153)
T KOG4680|consen 98 PVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTCISFSFDIGFGSSVA 151 (153)
T ss_pred CcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEEEEEEEEeeccceec
Confidence 999999999999999999999999999999999999999999999999887764
No 3
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=99.97 E-value=1.1e-29 Score=177.69 Aligned_cols=118 Identities=20% Similarity=0.361 Sum_probs=109.2
Q ss_pred eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEccc--CCCCCCc--CCCCCC
Q 031870 23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE--THDICEE--VSCPIE 98 (151)
Q Consensus 23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~--~~d~C~~--~~CPv~ 98 (151)
|++|+++.+....++|++|+..||+++||++++++++|+++++++++++++.+.++|+++|.. +.|+|+. .+||++
T Consensus 1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~ 80 (123)
T cd00916 1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS 80 (123)
T ss_pred CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence 689998555678999999999999999999999999999999999999999999999877654 7899987 899999
Q ss_pred CC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870 99 AG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 140 (151)
Q Consensus 99 ~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 140 (151)
+| .|+|+++++|++.+|.++|+++|+|+|++++.++||++++
T Consensus 81 ~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d~~~~~~~Cf~~~~ 123 (123)
T cd00916 81 AGEDVTYTLSLPVLAPYPGISVTVEWELTDDDGQVLTCFQIPA 123 (123)
T ss_pred CCcEEEEEEeeeccccCCCeEEEEEEEEEcCCCCEEEEEEeeC
Confidence 99 8999999999999999999999999998899999999974
No 4
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=99.96 E-value=4.9e-29 Score=173.32 Aligned_cols=117 Identities=23% Similarity=0.376 Sum_probs=107.3
Q ss_pred eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEc--ccCCCCCCcCCCCCCCC
Q 031870 23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVH--SETHDICEEVSCPIEAG 100 (151)
Q Consensus 23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~--~~~~d~C~~~~CPv~~G 100 (151)
|++|++ +....++|++|+..||.++||++++++++|++++++++.++++.++++|+++| ..+.|+|+.+.||+++|
T Consensus 1 f~~Cg~--~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G 78 (120)
T cd00918 1 FKDCGK--GEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKG 78 (120)
T ss_pred CeeCCC--CCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCC
Confidence 689988 45789999999999999999999999999999999999999999999997664 44789998899999999
Q ss_pred -cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 031870 101 -NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 142 (151)
Q Consensus 101 -~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 142 (151)
+|+|+++++|++.||..+++++|+|.|++| .++||+++.+|
T Consensus 79 ~~~~y~~~~~V~~~~P~v~~~V~~~L~d~~g-~~~Cf~~~~~~ 120 (120)
T cd00918 79 QHYDIKYTWNVPAILPKIKAVVKAVLIGDHG-VLACGIVNGEV 120 (120)
T ss_pred cEEEEEEeeeccccCCCeEEEEEEEEEcCCC-cEEEEEEcCcC
Confidence 899999999999999999999999999878 49999998764
No 5
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=99.96 E-value=2e-28 Score=172.42 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=124.7
Q ss_pred CcceehHHHHHHhhhhc----ccccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEE
Q 031870 1 MNRQLLLLFTFYVLVSS----IQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 76 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~~----~~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~ 76 (151)
||..++.+++++++++. +.++.+++|+++++....|+|++|+.+||.++||++..|+++|.++++.+..+..++.+
T Consensus 1 m~ms~~~~v~l~alls~a~aq~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~ 80 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAAAQAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGI 80 (158)
T ss_pred CchHHHHHHHHHHHHHHhhhcccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeee
Confidence 55455666666666553 33789999999888889999999999999999999999999999999999998788777
Q ss_pred Ece-EEE--cccCCCCCCc------CCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870 77 YFG-IRV--HSETHDICEE------VSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 144 (151)
Q Consensus 77 ~~~-~~v--~~~~~d~C~~------~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 144 (151)
.+| +++ |....|+|.. ..||+.+| .|+|..+++|-..+|.+...++|+|.|++|+..+||.++++|+.
T Consensus 81 ~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~iew~L~D~d~~~~~Cf~ipakIk~ 158 (158)
T KOG4063|consen 81 TLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVIIEWQLQDQDNEKAVCFEIPAKIKK 158 (158)
T ss_pred ecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEeeccccCCceeEEEEEEEecCCCCeEEEEEEEeeecC
Confidence 776 655 5556788874 58999999 89999999999999999999999999999999999999999863
No 6
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=99.96 E-value=4.9e-28 Score=167.83 Aligned_cols=113 Identities=35% Similarity=0.688 Sum_probs=103.9
Q ss_pred eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceE--EEcccCCCCCCcC--CCCCC
Q 031870 23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGI--RVHSETHDICEEV--SCPIE 98 (151)
Q Consensus 23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~v~~~~~d~C~~~--~CPv~ 98 (151)
|++|++ . ...|.+++++|||+++|++++++++|+++++++++++++.++++|+ +++..+.|+|+.. .||++
T Consensus 1 ~~~C~~--~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~ 75 (118)
T smart00737 1 FKDCGS--N---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIE 75 (118)
T ss_pred CccCCC--C---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCC
Confidence 789987 2 5699999999999999999999999999999999999999999984 5666789999874 89999
Q ss_pred CC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870 99 AG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 140 (151)
Q Consensus 99 ~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 140 (151)
+| .|+|+.++.||+.+|.|+|+++|+++|++++.++|+++++
T Consensus 76 ~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~~i~C~~~~~ 118 (118)
T smart00737 76 KGETVNYTNSLTVPGIFPPGKYTVKWELTDEDGEELACINFTV 118 (118)
T ss_pred CCeeEEEEEeeEccccCCCeEEEEEEEEEcCCCCEEEEEEccC
Confidence 99 7899999999999999999999999999999999999874
No 7
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=99.96 E-value=9.6e-28 Score=169.14 Aligned_cols=121 Identities=32% Similarity=0.677 Sum_probs=108.2
Q ss_pred ccceeecCCCCCCCccEEEeEEEee-CCCCCCCCcEEEEEEE-EEceeecCeEEEEEEEEce-EEEccc----CCCCCCc
Q 031870 20 AIDFTYCGQYDEENFPLKVQQIKII-PDPVVTGKPAIFNISA-VTDRSVSGGKVMIEVRYFG-IRVHSE----THDICEE 92 (151)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~I~~~~~~-Pc~~~~G~~~~i~~~~-~~~~~i~~~~~~v~~~~~~-~~v~~~----~~d~C~~ 92 (151)
++.|++|++ +....++|++++++ ||++++|++++++++| +++++.+.+++++.++++| +++|.. ..|+|+.
T Consensus 1 ~v~~~~C~~--~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~ 78 (134)
T PF02221_consen 1 AVNFKDCGD--GKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDN 78 (134)
T ss_dssp EEEEEESSS--CTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGT
T ss_pred CcEEEECCC--cccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhh
Confidence 468999986 45578899999998 9999999999999999 7888888888999999998 777554 3499993
Q ss_pred -----CCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 031870 93 -----VSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 142 (151)
Q Consensus 93 -----~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 142 (151)
.+||+++| .|+|++++.+|+.+|.|+|+++|+++|++|++++|++++++|
T Consensus 79 ~~~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 79 LFGNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp SCCSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred cccccccCccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 59999999 679999999999999999999999999998999999999987
No 8
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=99.95 E-value=6e-27 Score=164.49 Aligned_cols=117 Identities=17% Similarity=0.324 Sum_probs=105.5
Q ss_pred eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEccc--CCCCCCcC-----CC
Q 031870 23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE--THDICEEV-----SC 95 (151)
Q Consensus 23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~--~~d~C~~~-----~C 95 (151)
|++|+++.+....++|++|+..||++++|++++++++|+++++++++++++.++++|+++|.. +.|+|+.. .|
T Consensus 1 ~~~C~~~~~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~C 80 (127)
T cd00912 1 LVDCSDNSANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFC 80 (127)
T ss_pred CcccCCCCCceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCcccccC
Confidence 789987433445788899999999999999999999999999999999999999999888664 78999863 89
Q ss_pred CCCCC-cEEEEEEEEeCC-CCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 031870 96 PIEAG-NFVLSHAETLPG-YTPPGVYTLKMKMIGKNGYQLTCFSFK 139 (151)
Q Consensus 96 Pv~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~i~C~~~~ 139 (151)
|+++| +|+|+.+++||+ .+|.+.|+++|++.|++|++++|++++
T Consensus 81 Pl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~~v~C~~~~ 126 (127)
T cd00912 81 PLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGEVLACAQAT 126 (127)
T ss_pred CcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCCEEEEEecc
Confidence 99999 999999999997 899999999999999889999999986
No 9
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=99.88 E-value=7.8e-22 Score=137.98 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=98.1
Q ss_pred cceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCC
Q 031870 21 IDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSC 95 (151)
Q Consensus 21 ~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~C 95 (151)
+-|+.|+. . +.-+++++||.++||++++|+++|++++++++.++++.++.+|+++|.....+|++ +.|
T Consensus 11 ~~y~~cd~--~-----~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~~C~~g~~~~s~C 83 (130)
T cd00915 11 FSYSSCDP--M-----QDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEIICHGYLDKYSFC 83 (130)
T ss_pred EEeeeCCc--h-----heeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcccccCCCcccccC
Confidence 45788876 2 22578899999999999999999999999999999999999998887322349996 689
Q ss_pred CCCCC-cEEEE--EEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870 96 PIEAG-NFVLS--HAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 140 (151)
Q Consensus 96 Pv~~G-~~~~~--~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 140 (151)
|+++| +|+|+ +++++.+ ||.++|+++|+|+|++++.++|+++.+
T Consensus 84 P~~kGet~~Y~~p~slpi~~-yP~~~y~V~weL~d~~~~~l~Cf~~ti 130 (130)
T cd00915 84 GALKGETVYYVGPFSFKGIL-IPQGQYRCVAELIVENRETVACANFTI 130 (130)
T ss_pred CccCCceEEEeeeecccccc-cCCccEEEEEEEECCCCCEEEEEEEEC
Confidence 99999 89999 8899999 999999999999999899999999863
No 10
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=99.85 E-value=4.1e-20 Score=132.78 Aligned_cols=121 Identities=22% Similarity=0.486 Sum_probs=100.2
Q ss_pred ccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEE--ce-E-EEc------cc-CC
Q 031870 20 AIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRY--FG-I-RVH------SE-TH 87 (151)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~--~~-~-~v~------~~-~~ 87 (151)
+..|++|+. +.+.+.|++++++|+|+.++++++++++++.++++.++ ++.+.++. .| | ++| .. ..
T Consensus 2 ~fsW~nCg~---~~dp~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~ 78 (162)
T cd00258 2 GFSWSNCDG---ESLPAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYD 78 (162)
T ss_pred CcccccCCC---CCCceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCccccc
Confidence 568999998 45799999999999999999999999999999999998 67666654 33 3 433 12 45
Q ss_pred CCCCcC---------------------CCCCCCCcEEEEEEE-Ee-----CCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870 88 DICEEV---------------------SCPIEAGNFVLSHAE-TL-----PGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 140 (151)
Q Consensus 88 d~C~~~---------------------~CPv~~G~~~~~~~~-~i-----p~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 140 (151)
|+|+.+ +||+++|+|++..+. .| |++++.|+|++++.+ +++|++++|+++.+
T Consensus 79 d~C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~~~l-~~~g~~l~C~~~~~ 157 (162)
T cd00258 79 NACDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRITGIL-MADGKELGCGKFTF 157 (162)
T ss_pred chhhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEEEEE-CCCCCEEEEEEEEE
Confidence 788842 699999999996653 56 888999999999998 68899999999999
Q ss_pred EEcc
Q 031870 141 KIGF 144 (151)
Q Consensus 141 ~i~~ 144 (151)
.+..
T Consensus 158 sL~~ 161 (162)
T cd00258 158 SLES 161 (162)
T ss_pred EEec
Confidence 9864
No 11
>PF14558 TRP_N: ML-like domain
Probab=98.84 E-value=8.4e-08 Score=68.51 Aligned_cols=120 Identities=20% Similarity=0.383 Sum_probs=82.7
Q ss_pred ccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc---CCCC
Q 031870 20 AIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE---VSCP 96 (151)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~---~~CP 96 (151)
...|.+|.+ + ..+.++..++.=.| ..+++.+++.|..+..-...++++++...|........|.|+. ..||
T Consensus 4 t~~f~~Cl~--~--s~~~~~~Fdv~~~~--~n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCP 77 (141)
T PF14558_consen 4 TSSFSNCLD--N--SYFTASRFDVTYDP--DNRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCP 77 (141)
T ss_pred eCChhHcCC--c--cccceEEEeEEEcC--CCCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccc
Confidence 457899977 3 35555555544222 3557888888885543222457777777788777888999995 5899
Q ss_pred CCCCcEEEEEEEEe---------CCC---CCCeEEEEEEEEEeC-CCCEEEEEEEEEEEccc
Q 031870 97 IEAGNFVLSHAETL---------PGY---TPPGVYTLKMKMIGK-NGYQLTCFSFKFKIGFG 145 (151)
Q Consensus 97 v~~G~~~~~~~~~i---------p~~---~P~g~y~v~~~l~d~-~~~~i~C~~~~~~i~~~ 145 (151)
+.||.+....+..+ |.+ +|...-++++++.|. ++++++|++..++=.++
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~ip~iay~~pdl~a~~~v~~~~~~~~~~iaCv~a~ltng~t 139 (141)
T PF14558_consen 78 LPPGFFAIASSQIIVPPSFTSQIPSIAYAFPDLDATVRVILGDTDTGTQIACVQATLTNGKT 139 (141)
T ss_pred ccccccccccccccCCHHHhhcCCceeEEcCCceEEEEEEEccCCCCCEEEEEEEEEECCCc
Confidence 99996555544433 322 366666778888887 68899999999876554
No 12
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=97.62 E-value=0.0044 Score=43.78 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=60.9
Q ss_pred CCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCCCCCCC--cEEEEEEEEeCCCCCCeEEE
Q 031870 48 VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSCPIEAG--NFVLSHAETLPGYTPPGVYT 120 (151)
Q Consensus 48 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~CPv~~G--~~~~~~~~~ip~~~P~g~y~ 120 (151)
.++|+++.+++.++.+..+.+-++.+.-.+.+-. -......|.. -.=.+..| .|.++..+.||..+|+|.|.
T Consensus 32 ~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH 110 (132)
T PF15418_consen 32 ATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDYH 110 (132)
T ss_pred EecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcceE
Confidence 6799999999999998888776555532221110 0000111111 00023334 69999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEEEEEEE
Q 031870 121 LKMKMIGKNGYQLTCFSFKFKI 142 (151)
Q Consensus 121 v~~~l~d~~~~~i~C~~~~~~i 142 (151)
+.++++|+.|.+-. ....++|
T Consensus 111 ~~i~VtD~~Gn~~~-~~~~i~I 131 (132)
T PF15418_consen 111 FMITVTDAAGNQTE-EERSIKI 131 (132)
T ss_pred EEEEEEECCCCEEE-EEEEEEE
Confidence 99999999988643 4444443
No 13
>smart00697 DM8 Repeats found in several Drosophila proteins.
Probab=96.71 E-value=0.011 Score=38.35 Aligned_cols=36 Identities=28% Similarity=0.680 Sum_probs=28.9
Q ss_pred CCCCCCCCcEEEEE-E---EEeCCCCCCeEEEEEEEEEeC
Q 031870 93 VSCPIEAGNFVLSH-A---ETLPGYTPPGVYTLKMKMIGK 128 (151)
Q Consensus 93 ~~CPv~~G~~~~~~-~---~~ip~~~P~g~y~v~~~l~d~ 128 (151)
..||+++|.|.+.- . ..+|+.+|.|.|++++++...
T Consensus 40 ~~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~~~~~~~ 79 (93)
T smart00697 40 DTCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLNLTFFFG 79 (93)
T ss_pred CCCCCcCCeEEEEeeEeCcccCCccCCCeeEEEEEEEEcC
Confidence 37999999876644 2 367888999999999999853
No 14
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=96.44 E-value=0.053 Score=37.46 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=53.4
Q ss_pred ccEEEeEEEeeC-----C-CCCCCCcEEEEEEEEEceeecCeEEEEEEEE-ceEEEcccCCCCCCcCCCCCCCCcEEEEE
Q 031870 34 FPLKVQQIKIIP-----D-PVVTGKPAIFNISAVTDRSVSGGKVMIEVRY-FGIRVHSETHDICEEVSCPIEAGNFVLSH 106 (151)
Q Consensus 34 ~~v~I~~~~~~P-----c-~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~v~~~~~d~C~~~~CPv~~G~~~~~~ 106 (151)
..++|+++.+.. + .+..|+++.+++++..++++....+.+.++- .|..+...+...-.......++|.++++.
T Consensus 11 ~~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~ 90 (142)
T PF14524_consen 11 GEARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTF 90 (142)
T ss_dssp SSEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEE
T ss_pred CCEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECccccCccccccCCCEEEEEE
Confidence 456666666543 3 4678999999999999999888665555442 34444332111111111112266888888
Q ss_pred EEEeCCCCCCeEEEEEEEEE
Q 031870 107 AETLPGYTPPGVYTLKMKMI 126 (151)
Q Consensus 107 ~~~ip~~~P~g~y~v~~~l~ 126 (151)
+++.+ +.+|.|.+.+.+.
T Consensus 91 ~i~~~--L~~G~Y~i~v~l~ 108 (142)
T PF14524_consen 91 TIPKP--LNPGEYSISVGLG 108 (142)
T ss_dssp EEE----B-SEEEEEEEEEE
T ss_pred EEcCc--cCCCeEEEEEEEE
Confidence 87777 7789999999994
No 15
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.57 E-value=0.22 Score=32.23 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=54.0
Q ss_pred cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCC
Q 031870 35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGY 113 (151)
Q Consensus 35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~ 113 (151)
.+.| .....|..+..|+++++++............+.+.+..++-.+-. ... =.+.+| ..++++++..+
T Consensus 3 DL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~--~~i-----~~L~~g~~~~v~~~~~~~-- 72 (101)
T PF07705_consen 3 DLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVST--VTI-----PSLAPGESETVTFTWTPP-- 72 (101)
T ss_dssp -EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEE--EEE-----SEB-TTEEEEEEEEEE-S--
T ss_pred CEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceecc--EEE-----CCcCCCcEEEEEEEEEeC--
Confidence 3555 777888899999999999998877666666677777777754411 111 236888 67778777777
Q ss_pred CCCeEEEEEEEEEeCCC
Q 031870 114 TPPGVYTLKMKMIGKNG 130 (151)
Q Consensus 114 ~P~g~y~v~~~l~d~~~ 130 (151)
-+|.|++++.+ |.++
T Consensus 73 -~~G~~~i~~~i-D~~n 87 (101)
T PF07705_consen 73 -SPGSYTIRVVI-DPDN 87 (101)
T ss_dssp -S-CEEEEEEEE-STTT
T ss_pred -CCCeEEEEEEE-eeCC
Confidence 56899998877 4433
No 16
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.33 E-value=0.11 Score=32.81 Aligned_cols=72 Identities=15% Similarity=0.341 Sum_probs=41.3
Q ss_pred CCCCcEEEEEEEEEcee--ecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEE
Q 031870 49 VTGKPAIFNISAVTDRS--VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKM 125 (151)
Q Consensus 49 ~~G~~~~i~~~~~~~~~--i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l 125 (151)
.+|+.+++++..+...+ +....+.+.+ =.||.+.... .... .+.+| ..++++.+.+|...+.|.|.+++++
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~----~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASP----ASVP-SLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EE----EEE---B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCc----cccc-cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 47889999998887543 3333344443 3566521110 0122 67999 7999999999999999999999886
Q ss_pred E
Q 031870 126 I 126 (151)
Q Consensus 126 ~ 126 (151)
.
T Consensus 76 ~ 76 (78)
T PF10633_consen 76 R 76 (78)
T ss_dssp E
T ss_pred E
Confidence 4
No 17
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=95.31 E-value=0.43 Score=34.91 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=63.1
Q ss_pred ccceeecCCCCC----CCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeE---EEEEEEE---ceE-E-E-cccC
Q 031870 20 AIDFTYCGQYDE----ENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGK---VMIEVRY---FGI-R-V-HSET 86 (151)
Q Consensus 20 ~~~~~~C~~~~~----~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~---~~v~~~~---~~~-~-v-~~~~ 86 (151)
.-.|++|.++-+ ....+++++.++.. -++.++++...+..-+++-+. +++.+.. |-| | + -...
T Consensus 10 ~~ifs~C~n~~pg~~~i~~~~D~S~l~~~~----d~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~ 85 (164)
T smart00675 10 PDLYSPCTDAPPGNIGLREAFDISNLVVDM----DPDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMAT 85 (164)
T ss_pred ccccccCCCCCCCccchhhccchhheEEEE----cCCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeec
Confidence 345899987211 13457778888775 455677777777777785442 3444332 335 2 2 3346
Q ss_pred CCCCCcC-----------------------CCCCCCC-cEEE-----EEEE-EeCCCCCCeEEEEEEEEE--eCCC
Q 031870 87 HDICEEV-----------------------SCPIEAG-NFVL-----SHAE-TLPGYTPPGVYTLKMKMI--GKNG 130 (151)
Q Consensus 87 ~d~C~~~-----------------------~CPv~~G-~~~~-----~~~~-~ip~~~P~g~y~v~~~l~--d~~~ 130 (151)
.|.|... .||-.|| .+.+ ...+ .++...-.|+|.+.+.+. |+.|
T Consensus 86 ~dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~v~~~~AfD~~~ 161 (164)
T smart00675 86 PDFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKAVVTFEAFDEKN 161 (164)
T ss_pred cChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEEEEEEEeecccC
Confidence 7999841 6999999 5433 2333 234344468777766654 5444
No 18
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects. Their function is unknown.
Probab=94.76 E-value=0.043 Score=34.88 Aligned_cols=28 Identities=36% Similarity=0.933 Sum_probs=22.2
Q ss_pred CCCCCCCcEEEEE-E---EEeCCCCCCeEEEE
Q 031870 94 SCPIEAGNFVLSH-A---ETLPGYTPPGVYTL 121 (151)
Q Consensus 94 ~CPv~~G~~~~~~-~---~~ip~~~P~g~y~v 121 (151)
.||+++|.|.+.- . ..+|+.+|.|.|.+
T Consensus 50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i 81 (81)
T PF06477_consen 50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI 81 (81)
T ss_pred CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence 7999999877653 3 36899999999874
No 19
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=94.34 E-value=0.68 Score=34.97 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=57.7
Q ss_pred CCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEEEEE
Q 031870 48 VVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTLKMK 124 (151)
Q Consensus 48 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v~~~ 124 (151)
++-|....+.+.|.+++++-+| +..-.++-.|+++-.... .-+ .-.| ++..|++.+.. ..|+ ++-.|+|+++.+
T Consensus 103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~-miG-sy~P-~~e~y~~~~p~eeaPsG~laRG~Y~aks~ 179 (200)
T PF02115_consen 103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREE-MIG-SYAP-QTEPYEKTFPEEEAPSGMLARGSYTAKSK 179 (200)
T ss_dssp EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEE-EEE-EE---ESSEEEEEEEEEE--BSTTT-EEEEEEEE
T ss_pred ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccce-eee-ccCC-CCcceEEeCcCccCCCceeEeeeeeEEEE
Confidence 6678889999999999885554 555556678887633221 111 1112 12246666543 4554 567899999999
Q ss_pred EEeCCCCEEEEEEEEEEEcc
Q 031870 125 MIGKNGYQLTCFSFKFKIGF 144 (151)
Q Consensus 125 l~d~~~~~i~C~~~~~~i~~ 144 (151)
++|+++....=++-.+.|..
T Consensus 180 f~DdD~~~~l~~~w~feI~K 199 (200)
T PF02115_consen 180 FVDDDKNVHLEWEWSFEIKK 199 (200)
T ss_dssp EEETTSSECEEEEEEEEEES
T ss_pred EEeCCCcEEEEEEEEEEEec
Confidence 99988887666777777754
No 20
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=94.01 E-value=0.37 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 105 SHAETLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 105 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
.+++.+|..+++|.|+++|+....||..+
T Consensus 60 ~~~~~l~~~l~~G~YtV~wrvvs~DGH~~ 88 (97)
T PF04234_consen 60 TLTVPLPPPLPPGTYTVSWRVVSADGHPV 88 (97)
T ss_dssp EEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred EEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence 55677888899999999999999888765
No 21
>PRK10301 hypothetical protein; Provisional
Probab=92.48 E-value=0.38 Score=33.50 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 106 HAETLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 106 ~~~~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
.+++++..+++|.|+|+|+....||..+
T Consensus 88 ~~v~l~~~L~~G~YtV~Wrvvs~DGH~~ 115 (124)
T PRK10301 88 LIVPLADSLKPGTYTVDWHVVSVDGHKT 115 (124)
T ss_pred EEEECCCCCCCccEEEEEEEEecCCCcc
Confidence 4567777889999999999998888754
No 22
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=90.37 E-value=1.2 Score=35.05 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=35.4
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870 104 LSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 144 (151)
Q Consensus 104 ~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 144 (151)
|..++.+|...|.|.|++++.+. ++|+.+.=.+.++++.+
T Consensus 182 Fra~i~LPAnvp~G~Y~v~v~L~-r~G~vv~~~~t~l~V~K 221 (261)
T TIGR02186 182 FRATLRLPANVPNGTHEVRAYLF-RGGVFIARTELALEIVK 221 (261)
T ss_pred EEEeeecCCCCCCceEEEEEEEE-eCCEEEEEEEeEEEEEE
Confidence 56678999999999999999998 68999988888888875
No 23
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=89.06 E-value=1.7 Score=33.62 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=34.0
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870 103 VLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 144 (151)
Q Consensus 103 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 144 (151)
.|..++.+|...|.|.|++++.+. ++|+.+.=.+.++++.+
T Consensus 156 lFra~i~LPanvp~G~Y~v~v~l~-rdG~vv~~~~~~l~V~K 196 (236)
T PF09608_consen 156 LFRARIPLPANVPPGDYTVRVYLF-RDGQVVASQETPLRVRK 196 (236)
T ss_pred eEEEEeEcCCCCCcceEEEEEEEE-ECCEEEEEEeeEEEEEE
Confidence 366789999999999999999998 57888877777776654
No 24
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=87.74 E-value=2.9 Score=36.68 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.2
Q ss_pred cCCCCCCCC-cEEEEEEE
Q 031870 92 EVSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 92 ~~~CPv~~G-~~~~~~~~ 108 (151)
.+.||++|| .|+|.+..
T Consensus 102 ~TQcPI~PG~sftY~F~~ 119 (596)
T PLN00044 102 GTNCAIPAGWNWTYQFQV 119 (596)
T ss_pred CCcCCcCCCCcEEEEEEe
Confidence 378999999 78888775
No 25
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=87.73 E-value=0.86 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=18.0
Q ss_pred CCCCCCCcEEEEEEEEeCCCCCC--------eEEEEEEEE
Q 031870 94 SCPIEAGNFVLSHAETLPGYTPP--------GVYTLKMKM 125 (151)
Q Consensus 94 ~CPv~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l 125 (151)
..-+.+|+|+|.+++.+|..+|+ ..|.+++.+
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l 126 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL 126 (149)
T ss_dssp -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence 45678999999999999988775 468888887
No 26
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.79 E-value=2.6 Score=36.78 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=21.6
Q ss_pred EEEceEEEccc-CCCCCCc-CCCCCCCC-cEEEEEEEE
Q 031870 75 VRYFGIRVHSE-THDICEE-VSCPIEAG-NFVLSHAET 109 (151)
Q Consensus 75 ~~~~~~~v~~~-~~d~C~~-~~CPv~~G-~~~~~~~~~ 109 (151)
+.+.|+.-... -.|. .. +.||++|| +|+|.+++.
T Consensus 83 ihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~ 119 (563)
T KOG1263|consen 83 IHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVK 119 (563)
T ss_pred EEeccccccCCccccC-CccccCCcCCCCeEEEEEEeC
Confidence 33555533222 2367 54 89999999 788887743
No 27
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=86.23 E-value=12 Score=28.01 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=55.3
Q ss_pred CCCCCcEEEEEEEEEceeecCeE-EEEEEEEceEEEcccCCCCCCcCCCCCCCC--cEEEEEEE-EeCC-CCCCeEEEEE
Q 031870 48 VVTGKPAIFNISAVTDRSVSGGK-VMIEVRYFGIRVHSETHDICEEVSCPIEAG--NFVLSHAE-TLPG-YTPPGVYTLK 122 (151)
Q Consensus 48 ~~~G~~~~i~~~~~~~~~i~~~~-~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G--~~~~~~~~-~ip~-~~P~g~y~v~ 122 (151)
++-|.+..+.+.|..+++|.+|- ..-.++--|+.+-...+ .=+. ..|. .|.|.... .-|+ .+-.|+|.++
T Consensus 101 iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~-MlGS----y~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~ 175 (200)
T KOG3205|consen 101 IKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKY-MLGS----YGPQAEPYEFVTPEEEAPSGMLARGSYSAK 175 (200)
T ss_pred eecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhh-hccc----CCCCCcceeeeCCcccCCccceeecceeee
Confidence 56788999999999999998883 33334456666533222 1111 1222 35554322 1221 3456899999
Q ss_pred EEEEeCCCCEEEEEEEEEEEcc
Q 031870 123 MKMIGKNGYQLTCFSFKFKIGF 144 (151)
Q Consensus 123 ~~l~d~~~~~i~C~~~~~~i~~ 144 (151)
-.++|+|+..-.=.+-.+.|..
T Consensus 176 skF~DDDk~~hLe~~w~~~I~K 197 (200)
T KOG3205|consen 176 SKFTDDDKTCHLEWNWTFDIKK 197 (200)
T ss_pred eEEecCCCceEEEEEEEEEEee
Confidence 9999977765555555666543
No 28
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=84.96 E-value=6.1 Score=27.09 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEEEEEceeecCeEEEEEEEEceEE---------Ecc-cCCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCC
Q 031870 48 VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIR---------VHS-ETHDICEEVSCPIEAG-NFVLSHAETLPGYTPP 116 (151)
Q Consensus 48 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~---------v~~-~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~ 116 (151)
++||+.+.+.+.|.-..+-..-.+.+....|.-| ++. ...+.=.. ..=+... .-+.++.+..|+..|-
T Consensus 29 VRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W-~a~v~~~~~~~~tv~V~spa~A~V 107 (118)
T PF00868_consen 29 VRRGQPFTITLRFNRPFDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLDSSSW-SARVESQDGNSVTVSVTSPANAPV 107 (118)
T ss_dssp EETTSEEEEEEEESSS--TTTEEEEEEEEESSS--TTTTSEEEEEECSSS-TSSS-EEEEEEEETTEEEEEEE--TTS--
T ss_pred EECCCEEEEEEEEcCCcCCCCcEEEEEEEEecccccCCCcEEEEEEccCCCCCCE-EEEEEecCCCEEEEEEECCCCCce
Confidence 6899999999999765333344577777776321 111 01110000 0000111 1336667788999999
Q ss_pred eEEEEEEEEE
Q 031870 117 GVYTLKMKMI 126 (151)
Q Consensus 117 g~y~v~~~l~ 126 (151)
|.|++.++..
T Consensus 108 G~y~l~v~~~ 117 (118)
T PF00868_consen 108 GRYKLSVETK 117 (118)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999988754
No 29
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=84.84 E-value=3.2 Score=28.54 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEE
Q 031870 86 THDICEEVSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKM 125 (151)
Q Consensus 86 ~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l 125 (151)
+...|...+||+..| +++++.++........++..+.+++
T Consensus 15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~ 55 (127)
T cd00912 15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMS 55 (127)
T ss_pred EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEE
Confidence 346788889999999 8999999888887777777776664
No 30
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=84.44 E-value=3.1 Score=24.41 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=24.5
Q ss_pred eCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEccc
Q 031870 110 LPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFG 145 (151)
Q Consensus 110 ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~ 145 (151)
+|.. ..|.|.++++..|..|+.-.--...|.|-.+
T Consensus 18 ~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~tiDtt 52 (54)
T PF13754_consen 18 VPAL-ADGTYTITVTATDAAGNTSTSSSVTFTIDTT 52 (54)
T ss_pred CCCC-CCccEEEEEEEEeCCCCCCCccceeEEEeCC
Confidence 4444 6999999999999988764444445555443
No 31
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=83.81 E-value=1.8 Score=25.84 Aligned_cols=18 Identities=44% Similarity=0.833 Sum_probs=13.8
Q ss_pred CCCeEEEEEEEEEeCCCC
Q 031870 114 TPPGVYTLKMKMIGKNGY 131 (151)
Q Consensus 114 ~P~g~y~v~~~l~d~~~~ 131 (151)
+|+|+|+++++..|.+|.
T Consensus 36 L~~G~Y~l~V~a~~~~~~ 53 (66)
T PF07495_consen 36 LPPGKYTLEVRAKDNNGK 53 (66)
T ss_dssp --SEEEEEEEEEEETTS-
T ss_pred CCCEEEEEEEEEECCCCC
Confidence 589999999999997765
No 32
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=82.95 E-value=3.1 Score=28.44 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.5
Q ss_pred eCCCCCCCCcEEEEEEEEEceeecCeEEEEEEE
Q 031870 44 IPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 76 (151)
Q Consensus 44 ~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~ 76 (151)
.+||+++|+..+.+.++.....+..++.+++++
T Consensus 84 ~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~ 116 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWK 116 (134)
T ss_dssp TTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEEEcccceeeEEEEEEEE
Confidence 489999999999999999888888887666544
No 33
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=82.46 E-value=3.5 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=25.7
Q ss_pred CCCCCCCCcEEEEEEEEEceeecCeEEEEEEE
Q 031870 45 PDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 76 (151)
Q Consensus 45 Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~ 76 (151)
.||+.+|+.++.+..+.....+..++.++.+.
T Consensus 71 ~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~ 102 (118)
T smart00737 71 KCPIEKGETVNYTNSLTVPGIFPPGKYTVKWE 102 (118)
T ss_pred CCCCCCCeeEEEEEeeEccccCCCeEEEEEEE
Confidence 79999999999999888887777776655543
No 34
>PLN02991 oxidoreductase
Probab=79.84 E-value=6.7 Score=34.07 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=14.2
Q ss_pred cCCCCCCCC-cEEEEEEE
Q 031870 92 EVSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 92 ~~~CPv~~G-~~~~~~~~ 108 (151)
.+.|||+|| .|+|.+..
T Consensus 101 ~tQcpI~PG~sftY~F~~ 118 (543)
T PLN02991 101 GTTCPIPPGKNYTYALQV 118 (543)
T ss_pred CCCCccCCCCcEEEEEEe
Confidence 478999999 78888875
No 35
>PLN02168 copper ion binding / pectinesterase
Probab=79.27 E-value=9.8 Score=33.07 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=13.8
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.|||.|| .|+|.++.
T Consensus 100 tQcpI~PG~sftY~F~~ 116 (545)
T PLN02168 100 TNCPILPGTNWTYRFQV 116 (545)
T ss_pred CcCCCCCCCcEEEEEEe
Confidence 78999999 78888775
No 36
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=78.43 E-value=5.4 Score=27.54 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=23.5
Q ss_pred eCCCCCCCCcEEEEEEEEEceeecCeEEEEE
Q 031870 44 IPDPVVTGKPAIFNISAVTDRSVSGGKVMIE 74 (151)
Q Consensus 44 ~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~ 74 (151)
.-||+++|+.++.+.++.........++.++
T Consensus 71 l~CPl~~G~~~~y~~~~~V~~~~P~v~~~V~ 101 (120)
T cd00918 71 VKCPIKKGQHYDIKYTWNVPAILPKIKAVVK 101 (120)
T ss_pred EeCCCcCCcEEEEEEeeeccccCCCeEEEEE
Confidence 3699999999999999887665555444444
No 37
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=77.83 E-value=5.7 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred eCCCCCCCCcEEEEEEEEEceeecCeEEEEE
Q 031870 44 IPDPVVTGKPAIFNISAVTDRSVSGGKVMIE 74 (151)
Q Consensus 44 ~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~ 74 (151)
..||+++|+.++.+.++.........++.++
T Consensus 75 ~~CPl~~G~~~~y~~~~~v~~~~P~i~~~v~ 105 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLPVLAPYPGISVTVE 105 (123)
T ss_pred CCCCCcCCcEEEEEEeeeccccCCCeEEEEE
Confidence 6899999999999998887666655554444
No 38
>PLN02354 copper ion binding / oxidoreductase
Probab=77.21 E-value=7.6 Score=33.78 Aligned_cols=16 Identities=38% Similarity=0.837 Sum_probs=13.7
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||+.|| .|+|.++.
T Consensus 101 TQcpI~PG~sf~Y~F~~ 117 (552)
T PLN02354 101 TNCPIPPGTNFTYHFQP 117 (552)
T ss_pred CcCCCCCCCcEEEEEEe
Confidence 78999999 78888873
No 39
>PLN02835 oxidoreductase
Probab=76.61 E-value=11 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.683 Sum_probs=13.5
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||++|| .|+|.+..
T Consensus 103 tQ~pI~PG~sf~Y~F~~ 119 (539)
T PLN02835 103 TNCPIPPNSNYTYKFQT 119 (539)
T ss_pred CcCCCCCCCcEEEEEEE
Confidence 78999999 78888764
No 40
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=76.56 E-value=5.8 Score=27.78 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 105 SHAETLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 105 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
.+.++++..+..|.|++.|++...||...
T Consensus 88 ~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v 116 (127)
T COG2372 88 QLEVPLPQPLKAGVYTVDWRVVSSDGHVV 116 (127)
T ss_pred EEEecCcccCCCCcEEEEEEEEecCCcEe
Confidence 36677888899999999999998887653
No 41
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=76.52 E-value=12 Score=28.61 Aligned_cols=42 Identities=33% Similarity=0.502 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCC------CCE--EEEEEEEEEEcccc
Q 031870 105 SHAETLPGYTPPGVYTLKMKMIGKN------GYQ--LTCFSFKFKIGFGA 146 (151)
Q Consensus 105 ~~~~~ip~~~P~g~y~v~~~l~d~~------~~~--i~C~~~~~~i~~~~ 146 (151)
+.++.||+.+|+|.|-+|.++..=. |.+ ..|+++.|+=..++
T Consensus 137 ~~~~~IP~~l~~G~YLlR~E~IaLH~a~~~~gaQfY~~Caqi~Vtg~G~~ 186 (218)
T PF03443_consen 137 SWTFTIPKNLPPGQYLLRHEIIALHSAGQPGGAQFYPSCAQIKVTGGGTG 186 (218)
T ss_dssp EEEEE--TTBBSEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESSB-B
T ss_pred ceEEEeCCCCCCCCceEEecceeeccCccCCCCEEhhhCEEEEEECCCCC
Confidence 4556699999999999999977422 334 59999988755443
No 42
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=75.99 E-value=19 Score=25.10 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=36.8
Q ss_pred CCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEccc
Q 031870 99 AGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFG 145 (151)
Q Consensus 99 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~ 145 (151)
-|+--|-.++.+|+. ..|.|+++.++.|.+|..+.=-..++.|-..
T Consensus 77 ~G~efYGk~ltlp~l-~dG~ytvk~eiL~s~g~vV~t~s~~~~IDtt 122 (124)
T PF13752_consen 77 NGKEFYGKELTLPAL-GDGTYTVKSEILDSQGTVVQTYSYPFTIDTT 122 (124)
T ss_pred CCceeeeeEEEeccC-CCCcEEEEEEeeccCCCEEEeeeEeEEEecc
Confidence 355446677888887 7999999999999999988887777777543
No 43
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=75.48 E-value=18 Score=23.31 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCCcEEEEEEEEEce----eecCeEEEEEEEE-ceEEEcccCCCCCCcCCCCCCCCcEEEEEEEEeCCCCCCeEEEEEE
Q 031870 49 VTGKPAIFNISAVTDR----SVSGGKVMIEVRY-FGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKM 123 (151)
Q Consensus 49 ~~G~~~~i~~~~~~~~----~i~~~~~~v~~~~-~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~~ip~~~P~g~y~v~~ 123 (151)
++|+.+.+++-..... ......+.+.++- .|..+-.... ... -..|.++ .++.+|+..+.|.|++++
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~---~~~---~~~G~~~--~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSV---NTT---NENGIFS--GSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEE---EET---TCTTEEE--EEEE--SS---EEEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEe---eee---CCCCEEE--EEEECCCCCCCEeEEEEE
Confidence 4688888887655432 1222234444432 2333322111 000 1234444 447799999999999999
Q ss_pred EEEe
Q 031870 124 KMIG 127 (151)
Q Consensus 124 ~l~d 127 (151)
+..+
T Consensus 84 ~~~~ 87 (99)
T PF01835_consen 84 KTDD 87 (99)
T ss_dssp EETT
T ss_pred EEcc
Confidence 8853
No 44
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=74.38 E-value=15 Score=27.54 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCCCCCcEEEEEEEEeCCCCCC-----------eEEEEEEEEEeCC-------C-CEEEEEEEEEEEccc
Q 031870 94 SCPIEAGNFVLSHAETLPGYTPP-----------GVYTLKMKMIGKN-------G-YQLTCFSFKFKIGFG 145 (151)
Q Consensus 94 ~CPv~~G~~~~~~~~~ip~~~P~-----------g~y~v~~~l~d~~-------~-~~i~C~~~~~~i~~~ 145 (151)
+..+.+|.++|.++.-||..+|. +.|.+.+++...+ + .....++.+++|.+.
T Consensus 44 ~t~l~~G~h~fPFS~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~Rs 114 (191)
T PF13002_consen 44 PTTLTKGSHAFPFSYLIPGHLPASMDLGSTPLVSIKYELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKRS 114 (191)
T ss_pred ccccCCCcccCCeeEECCCCCccccccCCCCcEEEEEEEEEEEEEccCccccCCCcceeEEEeeeEEEEEe
Confidence 67789999999999988877653 4577777777621 2 345789999999874
No 45
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=73.26 E-value=6.7 Score=27.20 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=28.8
Q ss_pred CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
++|| .|+|+-...+. .|.|..+.+..+.|++|+.+
T Consensus 75 l~PG~~y~YtSg~~l~--Tp~G~M~GhY~M~~e~G~~F 110 (126)
T COG2967 75 LAPGEEYQYTSGCPLD--TPSGTMQGHYEMIDEDGETF 110 (126)
T ss_pred cCCCCceEEcCCcCcc--CCcceEEEEEEEecCCCcEE
Confidence 5889 78888775554 78999999999999999865
No 46
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=73.19 E-value=13 Score=26.04 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
+++| +|.++..+... |.+.+.+++.+.|..|+.+
T Consensus 50 Lk~G~~Y~l~~~~~~~---P~~svylki~F~dr~~e~i 84 (128)
T PF15432_consen 50 LKRGHTYQLKFNIDVV---PENSVYLKIIFFDRQGEEI 84 (128)
T ss_pred ecCCCEEEEEEEEEEc---cCCeEEEEEEEEccCCCEe
Confidence 3566 67777776665 7788999999999888765
No 47
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
Probab=72.22 E-value=8.4 Score=27.90 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=54.8
Q ss_pred cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEEEeCC-
Q 031870 35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPG- 112 (151)
Q Consensus 35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~~ip~- 112 (151)
.++|+++++..+|-.-...+.++++|...++++.. .+++. ++|...--..+.-+-...-=|+..|...|.++..-|.
T Consensus 3 ~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWkii-YVgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd~ 81 (154)
T PF04729_consen 3 RVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKII-YVGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPDP 81 (154)
T ss_dssp SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEEE-EESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----G
T ss_pred eEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEEE-EEecccccCCcEEEeeEEECCCcceeEEEEEEccCCCh
Confidence 58899999998888888899999999998888754 34442 2232210111111222234588999777777765554
Q ss_pred -CCCC----eEEEEEEEEEeCCCCEEEEEE
Q 031870 113 -YTPP----GVYTLKMKMIGKNGYQLTCFS 137 (151)
Q Consensus 113 -~~P~----g~y~v~~~l~d~~~~~i~C~~ 137 (151)
.+|. |--.+-++.. -+|+++.=+.
T Consensus 82 ~~Ip~~dllGvTvillt~s-Y~~~EFiRVG 110 (154)
T PF04729_consen 82 SKIPPEDLLGVTVILLTCS-YRGQEFIRVG 110 (154)
T ss_dssp GGSSCCHHSEEEEEEEEEE-ETTEEEEEEE
T ss_pred hhCChhhccccEEEEEEEE-ECCeEEEEEe
Confidence 3553 3333333333 2466654443
No 48
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=71.61 E-value=15 Score=25.67 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=32.9
Q ss_pred CCC-CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEc
Q 031870 94 SCP-IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIG 143 (151)
Q Consensus 94 ~CP-v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~ 143 (151)
..| +.|| .|+|+-...+. .|.|.....+.+.+++|+.+-+---.|.+.
T Consensus 72 ~qP~L~PGe~F~Y~S~~~l~--tp~G~M~G~y~~~~~~G~~F~v~Ip~F~L~ 121 (127)
T PRK05461 72 EQPVLAPGESFEYTSGAVLE--TPSGTMQGHYQMVDEDGERFEVPIPPFRLA 121 (127)
T ss_pred CCceECCCCCeEEeCCCCcc--CCCEEEEEEEEEEeCCCCEEEEEccCEEcC
Confidence 445 4688 56766655555 688999999999998898765544444443
No 49
>COG1470 Predicted membrane protein [Function unknown]
Probab=70.13 E-value=71 Score=27.49 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.7
Q ss_pred CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeC
Q 031870 97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGK 128 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~ 128 (151)
++|| .-+.+.++.+|+..++|.|.++++...+
T Consensus 438 L~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 438 LEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 6888 6799999999999999999999998853
No 50
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=68.75 E-value=8.8 Score=24.05 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCCCeEEEEEEEEEeCCCCEEEEE
Q 031870 113 YTPPGVYTLKMKMIGKNGYQLTCF 136 (151)
Q Consensus 113 ~~P~g~y~v~~~l~d~~~~~i~C~ 136 (151)
.+|.|.+.|+++++|..|+.-.|.
T Consensus 53 ~f~~G~t~V~ytA~D~~GN~a~C~ 76 (81)
T PF02494_consen 53 LFPVGTTTVTYTATDAAGNSATCS 76 (81)
T ss_pred eEeeceEEEEEEEEECCCCEEEEE
Confidence 567889999999999989888884
No 51
>PF03067 Chitin_bind_3: Chitin binding domain; InterPro: IPR004302 Entomopoxviruses are a class of insect viruses whose virions are embedded in cytoplasmic occlusion bodies. The major component of these protective complexes is a protein called spheroidin/spindolin. Intermolecular disulphide bonds have been shown to play major roles in the formation and structure of these viral occlusion bodies [] some of which are spindle body proteins.; GO: 0019028 viral capsid; PDB: 3UAM_E 2XWX_A 2LHS_A 2BEM_B 2BEN_B 4A02_A.
Probab=66.98 E-value=28 Score=25.34 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred CCCCcEEEEEEEEEceeecCeEEEEEEEEceEEE--c-ccCCCCCCcCCCCC--------CCCcEEEEEEEEeCCCCCCe
Q 031870 49 VTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRV--H-SETHDICEEVSCPI--------EAGNFVLSHAETLPGYTPPG 117 (151)
Q Consensus 49 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v--~-~~~~d~C~~~~CPv--------~~G~~~~~~~~~ip~~~P~g 117 (151)
+.|+.+.|++..++++ ..+..++.+.-.++.. + ....++-....|.+ .++...|++++.||.- ..|
T Consensus 82 ~~G~~i~~~~~~ta~H--~~g~~~~~itk~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~-~~g 158 (183)
T PF03067_consen 82 TPGQTIDFKWNITAPH--GTGYFEFYITKPGWDPTEPCLTWDDLELIPFCQYDNPGQDPGPADQTNYTMSVTLPDG-RCG 158 (183)
T ss_dssp ESE-EEEEEEEESS-S---EEEEEEEEB-TT--TTS----GGGBESSESEEEEEEEEHHHSSSEEEE--EEEE-TT---E
T ss_pred CCCCeEEEEEEEeccc--CCeeEEEEEcCCCCCcCccccchhhccccCceeecCCCcCcCCCCCceEEEEEECCCC-CcC
Confidence 5677888888888776 3444555554344421 0 00012211111221 1346777778889987 678
Q ss_pred EEEEEEEEEeCCCC--E-EEEEEEE
Q 031870 118 VYTLKMKMIGKNGY--Q-LTCFSFK 139 (151)
Q Consensus 118 ~y~v~~~l~d~~~~--~-i~C~~~~ 139 (151)
...++|.=.-.+.. . ..|..+.
T Consensus 159 ~~Vl~~~W~~~~~~~E~F~~C~Dv~ 183 (183)
T PF03067_consen 159 HCVLQWRWQRGDSWGETFYNCSDVT 183 (183)
T ss_dssp EEEEEEEEEETTSSE-EEEEEEEEE
T ss_pred CEEEEEEEEeccCCCCeEEeeEccC
Confidence 87777765544433 3 5888763
No 52
>PLN02792 oxidoreductase
Probab=66.91 E-value=9.2 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=19.9
Q ss_pred EceEEEccc-CCCCCCcCCCCCCCC-cEEEEEEE
Q 031870 77 YFGIRVHSE-THDICEEVSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 77 ~~~~~v~~~-~~d~C~~~~CPv~~G-~~~~~~~~ 108 (151)
+-|+..+.. ..|.=..+.||++|| .|+|.+++
T Consensus 73 WHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 73 WNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQV 106 (536)
T ss_pred CCCcccCCCCccCCCCCCcCccCCCCcEEEEEEe
Confidence 445544332 234323478999999 78888775
No 53
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=66.76 E-value=11 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=15.6
Q ss_pred CcceehH-HHHHHhhhhcccccceeecCC
Q 031870 1 MNRQLLL-LFTFYVLVSSIQAIDFTYCGQ 28 (151)
Q Consensus 1 m~~~~~l-l~~~~l~~~~~~~~~~~~C~~ 28 (151)
||.++++ ++++.++++.-|+...+|=++
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~iRDvqG 29 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANYIRDVQG 29 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcceecCCC
Confidence 7755555 444444555445556677655
No 54
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=65.34 E-value=14 Score=26.71 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=26.0
Q ss_pred CCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 031870 98 EAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 132 (151)
Q Consensus 98 ~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 132 (151)
..|.|.+.+...+|+.-+.+.|++++++.|..|++
T Consensus 104 ~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 104 GNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCceEEeecccccCCcCCCCeEEEEEEEEecCCCE
Confidence 34556666655566666678999999999998874
No 55
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=63.97 E-value=20 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=26.8
Q ss_pred CCCCCCCC--cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 93 VSCPIEAG--NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 93 ~~CPv~~G--~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
.+=|+-++ +|.+...+. ..|.+.+.+++.+.|..++++
T Consensus 56 P~LPlLk~g~~Y~i~~n~~---~~P~~s~~~ki~F~dr~~~ei 95 (135)
T TIGR03711 56 PSLPLLKRGQTYKLSLNAD---ASPEGSVYLKITFFDRQGEEI 95 (135)
T ss_pred CCCcEEcCCCEEEEEEeee---eCCCceEEEEEEEeccCCcee
Confidence 34565555 466555555 447889999999999888765
No 56
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=63.81 E-value=24 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCCCCCCC-cEEEEEEEEeCCCCCCe-EEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAETLPGYTPPG-VYTLKMK 124 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~~ip~~~P~g-~y~v~~~ 124 (151)
.+||+.+| +.+++.+......+..| ...+.++
T Consensus 20 sP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~ 53 (122)
T cd00917 20 SPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVK 53 (122)
T ss_pred ECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEE
Confidence 47899999 89999999888888776 5555554
No 57
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=63.22 E-value=13 Score=30.64 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=25.3
Q ss_pred CCCCcEEEEEEEEeCCCCCC--------eEEEEEEEEE
Q 031870 97 IEAGNFVLSHAETLPGYTPP--------GVYTLKMKMI 126 (151)
Q Consensus 97 v~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l~ 126 (151)
+.+|+|+|.+.+.||..+|+ ++|.+++.+.
T Consensus 102 l~~G~~~~pF~~~LP~~~P~Sfeg~~G~irY~vk~~id 139 (427)
T KOG3780|consen 102 LPPGNYEFPFSFTLPLNLPPSFEGKFGHVRYFVKAEID 139 (427)
T ss_pred cCCCceEEeEeccCCCCCCCceeeCCceEEEEEEEEEe
Confidence 78999999999999987764 5788888774
No 58
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=62.40 E-value=2.4 Score=25.01 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred CcceehHHHHHHhhhhccccc
Q 031870 1 MNRQLLLLFTFYVLVSSIQAI 21 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~~~~~~ 21 (151)
||+-++|++++++ +..+..+
T Consensus 1 Mk~p~~llllvll-lGla~s~ 20 (56)
T PF08138_consen 1 MKTPIFLLLLVLL-LGLAQSW 20 (56)
T ss_dssp ---------------------
T ss_pred CcchHHHHHHHHH-HHHHhcc
Confidence 8866666666653 3333443
No 59
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=62.25 E-value=13 Score=28.54 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=15.1
Q ss_pred CCCCeEEEEEEEEEeCCCCEE
Q 031870 113 YTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 113 ~~P~g~y~v~~~l~d~~~~~i 133 (151)
.+|.|.|++++...+.+|+.+
T Consensus 169 ~~~~G~Y~~~V~a~~~~G~~~ 189 (230)
T PRK12633 169 PLADGKYSITVSASDADAKPV 189 (230)
T ss_pred cCCCcceEEEEEEEeCCCcEE
Confidence 467888888888777666654
No 60
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=62.06 E-value=2.9 Score=20.82 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=8.6
Q ss_pred CcceehHHHHHHhhh
Q 031870 1 MNRQLLLLFTFYVLV 15 (151)
Q Consensus 1 m~~~~~ll~~~~l~~ 15 (151)
||+++++++.+..+.
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 376666666555443
No 61
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=60.85 E-value=16 Score=27.93 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=13.1
Q ss_pred CCCCeEEEEEEEEEeCCCCE
Q 031870 113 YTPPGVYTLKMKMIGKNGYQ 132 (151)
Q Consensus 113 ~~P~g~y~v~~~l~d~~~~~ 132 (151)
..|.|.|++++...|.+|+.
T Consensus 162 ~~~~G~Yt~~v~a~~~~G~~ 181 (221)
T PRK12634 162 RMAAGKYGVTATQTDTAGSK 181 (221)
T ss_pred cCCCeeeEEEEEEEeCCCcE
Confidence 35677777777776655653
No 62
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=60.84 E-value=38 Score=25.25 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=31.6
Q ss_pred CCCC-cEEEEEEEEeCCC---CCCeEEEEEEEEEeCCCCEEE
Q 031870 97 IEAG-NFVLSHAETLPGY---TPPGVYTLKMKMIGKNGYQLT 134 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~---~P~g~y~v~~~l~d~~~~~i~ 134 (151)
+.+| .|..+..+.+|.. .-.|.+.+.+++.+++|+.+.
T Consensus 53 l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~ 94 (199)
T PF06775_consen 53 LPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLA 94 (199)
T ss_pred cCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEE
Confidence 4668 7999999999975 456899999999999888764
No 63
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=59.93 E-value=7.8 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=16.1
Q ss_pred cCCCCCCCC-cEEEEEEEEeCCCCCCeEE
Q 031870 92 EVSCPIEAG-NFVLSHAETLPGYTPPGVY 119 (151)
Q Consensus 92 ~~~CPv~~G-~~~~~~~~~ip~~~P~g~y 119 (151)
...||+.|| .++|.+. ++. +.|.|
T Consensus 69 ~~~~~i~pG~~~~Y~~~--~~~--~~Gt~ 93 (117)
T PF07732_consen 69 VTQCPIAPGESFTYEFT--ANQ--QAGTY 93 (117)
T ss_dssp TSGSSBSTTEEEEEEEE--ESS--CSEEE
T ss_pred ccceeEEeecceeeeEe--eec--cccce
Confidence 368999999 6777655 443 45654
No 64
>PLN02604 oxidoreductase
Probab=59.51 E-value=51 Score=28.76 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=13.0
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||+.|| .++|.+..
T Consensus 100 tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 100 TQCPILPGETFTYEFVV 116 (566)
T ss_pred ccCccCCCCeEEEEEEc
Confidence 67999999 78887764
No 65
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=57.77 E-value=16 Score=26.47 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=25.9
Q ss_pred EEEEEEEEEceeecCeEEEEEEEEceE-EE---cccCCCCCCcCCCC
Q 031870 54 AIFNISAVTDRSVSGGKVMIEVRYFGI-RV---HSETHDICEEVSCP 96 (151)
Q Consensus 54 ~~i~~~~~~~~~i~~~~~~v~~~~~~~-~v---~~~~~d~C~~~~CP 96 (151)
+.++++.+++.+ ...-..++++++|+ .+ +.++-+.|-+..||
T Consensus 60 VvL~itv~ak~~-~~~~F~~Ev~qaGvF~i~~i~~e~m~~~L~i~CP 105 (157)
T COG1952 60 VVLTVTVTAKLG-EKTAFLCEVQQAGIFRIAGIPEEQMAHLLGIECP 105 (157)
T ss_pred EEEEEEEEEEcC-CeeEEEEEEEEeeEEEEcCCCHHHhhhhhhccCc
Confidence 334444444443 22236788888885 44 55677888888887
No 66
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=57.64 E-value=54 Score=22.30 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=19.3
Q ss_pred ccEEEeEEEeeCCCCCCCCcEEEEEEEEEc
Q 031870 34 FPLKVQQIKIIPDPVVTGKPAIFNISAVTD 63 (151)
Q Consensus 34 ~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~ 63 (151)
..++|++.++. +.|+.+.|+++..++
T Consensus 28 g~i~v~~~~~~----~~gd~L~V~m~idl~ 53 (115)
T PF12984_consen 28 GQIKVTNVSVE----KQGDSLHVDMDIDLS 53 (115)
T ss_pred CcEEEEeeEEE----EECCEEEEEEEEEec
Confidence 36788887765 378888888888764
No 67
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=56.22 E-value=20 Score=31.48 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.1
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||+.|| .|+|.+..
T Consensus 118 t~~~I~PG~s~~Y~f~~ 134 (587)
T TIGR01480 118 SFAGIAPGETFTYRFPV 134 (587)
T ss_pred cccccCCCCeEEEEEEC
Confidence 57999999 78887764
No 68
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=55.49 E-value=42 Score=19.92 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=18.6
Q ss_pred eCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 110 LPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 110 ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
+|..--.|.|++++++.|..|+.-
T Consensus 16 ~P~~~~dg~yt~~v~a~D~AGN~~ 39 (60)
T PF12245_consen 16 IPENDADGEYTLTVTATDKAGNTS 39 (60)
T ss_pred ccCccCCccEEEEEEEEECCCCEE
Confidence 454444679999999999988764
No 69
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=54.21 E-value=21 Score=28.05 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=12.7
Q ss_pred CCCCeEEEEEEEEEeCCCCEE
Q 031870 113 YTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 113 ~~P~g~y~v~~~l~d~~~~~i 133 (151)
.+|.|.|++++...+.+|+.+
T Consensus 181 ~~~~G~Yt~~v~A~~~~G~~~ 201 (259)
T PRK12812 181 YAGDGEYTIKAVYNNKNGEKI 201 (259)
T ss_pred cCCCeeeEEEEEEEcCCCcEE
Confidence 356667777776665555543
No 70
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=53.44 E-value=59 Score=22.76 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCC-cEEEEEEEEeC-CCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870 98 EAG-NFVLSHAETLP-GYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 144 (151)
Q Consensus 98 ~~G-~~~~~~~~~ip-~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 144 (151)
.|. .|.| .+++. ..+++|+|++++++.+.++ -.=|+-+|+|..
T Consensus 87 APNS~f~~--~i~~~~~~lk~G~Y~l~~~~~~~~~--~W~f~k~F~It~ 131 (140)
T PF11797_consen 87 APNSNFNF--PIPLGGKKLKPGKYTLKITAKSGKK--TWTFTKDFTITA 131 (140)
T ss_pred CCCCeEEe--EecCCCcCccCCEEEEEEEEEcCCc--EEEEEEEEEECH
Confidence 455 4444 34443 4688999999999986444 334555666643
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=53.20 E-value=18 Score=23.08 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=17.2
Q ss_pred CCCC-cEEEEEEEEeCCCCCCeEEEEEE
Q 031870 97 IEAG-NFVLSHAETLPGYTPPGVYTLKM 123 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~ 123 (151)
++|| ..+|..+++.+... +|.|++++
T Consensus 56 l~pGe~~~~~~~~~~~~~~-~G~Y~~~a 82 (82)
T PF12690_consen 56 LEPGESLTYEETWDLKDLS-PGEYTLEA 82 (82)
T ss_dssp E-TT-EEEEEEEESS-----SEEEEEEE
T ss_pred ECCCCEEEEEEEECCCCCC-CceEEEeC
Confidence 6899 68888887777655 79999874
No 72
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=50.36 E-value=58 Score=20.03 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=18.7
Q ss_pred CCCCCCcEEEEEEEEEceeecCeEEEE
Q 031870 47 PVVTGKPAIFNISAVTDRSVSGGKVMI 73 (151)
Q Consensus 47 ~~~~G~~~~i~~~~~~~~~i~~~~~~v 73 (151)
.+..|+..++++..+++.+...|...+
T Consensus 45 ~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp -B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 578899999999999999998886433
No 73
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=46.85 E-value=42 Score=23.59 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.7
Q ss_pred CCCeEEEE-EEEEEeCCCCEEEEEEEE
Q 031870 114 TPPGVYTL-KMKMIGKNGYQLTCFSFK 139 (151)
Q Consensus 114 ~P~g~y~v-~~~l~d~~~~~i~C~~~~ 139 (151)
+|.|.|.. ++.+-+..|..-.|+.|+
T Consensus 93 ~PaG~YeAlrI~IG~g~G~NWWCVLfP 119 (130)
T PF09551_consen 93 LPAGEYEALRITIGEGKGHNWWCVLFP 119 (130)
T ss_pred ccCCceEEEEEEecCccCcceEEEecC
Confidence 69999875 666666678999999886
No 74
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=46.79 E-value=37 Score=22.15 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCC
Q 031870 97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKN 129 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~ 129 (151)
+.|| .|+|+-...+. .|.|.....+++.++|
T Consensus 59 L~pGe~f~Y~S~~~l~--t~~G~M~G~y~~~~~~ 90 (90)
T PF04379_consen 59 LAPGESFEYTSGCPLS--TPSGSMEGSYTMVDED 90 (90)
T ss_dssp E-TTEEEEEEEEEEES--SSEEEEEEEEEEEET-
T ss_pred ECCCCcEEEcCCCCcC--CCCEEEEEEEEEEECc
Confidence 4678 56666666665 4789999999998764
No 75
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=44.59 E-value=40 Score=24.77 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=29.2
Q ss_pred CCC-cEEEEEE---EEeCCC------CCCeEEEE-EEEEEeCCCCEEEEEEEE
Q 031870 98 EAG-NFVLSHA---ETLPGY------TPPGVYTL-KMKMIGKNGYQLTCFSFK 139 (151)
Q Consensus 98 ~~G-~~~~~~~---~~ip~~------~P~g~y~v-~~~l~d~~~~~i~C~~~~ 139 (151)
+.| .|..+.. ..+|.. +|.|.|.. ++.+-+..|..-.|+.||
T Consensus 102 ~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlrI~IG~g~G~NWWCVlfP 154 (168)
T TIGR02837 102 AEGADYKVRVELGKYSFPTKLYGNIVLPAGEYEALRILIGEGAGANWWCVVFP 154 (168)
T ss_pred HhCCCCCeEEEEEEEeCCCcccCCEeccCCceEEEEEEecCcCCcceEEEecC
Confidence 456 5555554 356642 69999986 666666678899999886
No 76
>KOG3265 consensus Histone chaperone involved in gene silencing [Transcription; Chromatin structure and dynamics]
Probab=44.39 E-value=1.4e+02 Score=23.20 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=50.5
Q ss_pred cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCC--CCcCCCCCCCCcEEEEEEEEeC
Q 031870 35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDI--CEEVSCPIEAGNFVLSHAETLP 111 (151)
Q Consensus 35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~--C~~~~CPv~~G~~~~~~~~~ip 111 (151)
.++|.++.+.-.|-+-+.++.+.++|.--..+... .+++. ++|... +..+|- =..+--|+..|.+.|.+.-.-|
T Consensus 3 ~v~i~~V~Vl~Npa~F~dPfkFEItFEC~E~Lk~DLEWkli-YVGSa~--See~DQvLdsilVGPVP~G~~~FVf~AD~P 79 (250)
T KOG3265|consen 3 KVNILNVEVLDNPAKFVDPFKFEITFECLEELKHDLEWKLI-YVGSAE--SEEYDQVLDSILVGPVPVGRHKFVFQADAP 79 (250)
T ss_pred eeeeeeEEEccCccccCCceeEEEEEEEhhhcCCCceEEEE-Eeeccc--cchhhhhhhheeeccccccceEEEEecCCC
Confidence 57899999999888899999999999975555443 34442 233332 222221 1124578999977766665444
Q ss_pred --CCCCC
Q 031870 112 --GYTPP 116 (151)
Q Consensus 112 --~~~P~ 116 (151)
..+|.
T Consensus 80 d~~kIP~ 86 (250)
T KOG3265|consen 80 DPSKIPE 86 (250)
T ss_pred CcccCcc
Confidence 34553
No 77
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=44.16 E-value=20 Score=22.57 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=30.3
Q ss_pred cEEEEEEEEEceeecCeEEEEEEEE-ceEEEcccCCCCCCcCCCCCCCCcE--EEEEEEEeCCCCCCeEEEEEEEEEeC
Q 031870 53 PAIFNISAVTDRSVSGGKVMIEVRY-FGIRVHSETHDICEEVSCPIEAGNF--VLSHAETLPGYTPPGVYTLKMKMIGK 128 (151)
Q Consensus 53 ~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~v~~~~~d~C~~~~CPv~~G~~--~~~~~~~ip~~~P~g~y~v~~~l~d~ 128 (151)
....++.+.++.+.... .+.++- .|-.|-.... . +..+|.+ ++.-.-.=-...|+|.|++++...|.
T Consensus 11 ~~~~~~~~~l~~~a~~v--~v~I~d~~G~~V~t~~~---~----~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~~~ 80 (81)
T PF13860_consen 11 GTKGSIEYTLPEDADNV--TVTIYDSNGQVVRTISL---G----SQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTATDG 80 (81)
T ss_dssp TCEEEEEEEECSSCEEE--EEEEEETTS-EEEEEEE---E----ECSSEEEEEEE-SB-TTS-B--SEEEEEEEEEEET
T ss_pred CEEEEEEEeCCCcccEE--EEEEEcCCCCEEEEEEc---C----CcCCceEEEEECCCCCCcCCCCCCCEEEEEEEEeC
Confidence 35666777777665543 333322 2221211100 0 1245643 33333333345788999998888763
No 78
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=44.05 E-value=57 Score=23.63 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCCCCCCCcEEEEEEEEEceeecCeEEEEE
Q 031870 45 PDPVVTGKPAIFNISAVTDRSVSGGKVMIE 74 (151)
Q Consensus 45 Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~ 74 (151)
-||+.+|++++...++-..+...+..+.++
T Consensus 107 ~CPl~age~ytY~~slpI~~~yP~v~v~ie 136 (158)
T KOG4063|consen 107 YCPLSAGEDYTYLNSLPITENYPEVSVIIE 136 (158)
T ss_pred cCcccCCCceEEEEEeeccccCCceeEEEE
Confidence 389999999998888876655444444333
No 79
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.00 E-value=1e+02 Score=21.77 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=29.8
Q ss_pred CCCCcEEEEEE--EEeCCCCCCeEEEEEEEEEeCCC-CEEEEEEEEEEE
Q 031870 97 IEAGNFVLSHA--ETLPGYTPPGVYTLKMKMIGKNG-YQLTCFSFKFKI 142 (151)
Q Consensus 97 v~~G~~~~~~~--~~ip~~~P~g~y~v~~~l~d~~~-~~i~C~~~~~~i 142 (151)
..+|.|.++.. ......+|+|.|++.+...-++| ..+ ++++|++
T Consensus 74 ~~~G~~~~~~d~~~~~~~~l~~g~Y~l~vEaarE~g~~~l--~~~~~~l 120 (139)
T PF10029_consen 74 RPPGKYTLSWDGTDDIGNPLPDGGYTLRVEAAREHGGREL--VRIPFPL 120 (139)
T ss_pred CCCCccEEEEEccccccCccCCCcEEEEEEEEEEECCcEE--EEEEEEe
Confidence 45677666554 56666789999999999876654 445 4555555
No 80
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=43.13 E-value=1.5e+02 Score=25.89 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeC
Q 031870 50 TGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGK 128 (151)
Q Consensus 50 ~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~ 128 (151)
.-+..++++.|+.+..+....-.+.+.++|.++.... +.++ ....+.++.||+.+-.+.-++++++...
T Consensus 42 ~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s~~----------l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~~~ 111 (605)
T PF03170_consen 42 VVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGSIP----------LDAESAQPQTVTIPIPPALIKGFNRLTFEFIGH 111 (605)
T ss_pred cccceEEEEEEEECcccCCCcceEEEEECCEEeEEEe----------cCcCCCCceEEEEecChhhcCCceEEEEEEEec
Confidence 3456778888887777766655677778887664321 2222 2356777888887767777777777653
Q ss_pred CCCEEEEE
Q 031870 129 NGYQLTCF 136 (151)
Q Consensus 129 ~~~~i~C~ 136 (151)
..+. |.
T Consensus 112 ~~~~--C~ 117 (605)
T PF03170_consen 112 YTDD--CE 117 (605)
T ss_pred ccCc--cC
Confidence 3332 65
No 81
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=42.77 E-value=15 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=16.2
Q ss_pred CCCCCCcEEEEEEEEeCCCCCCeEE
Q 031870 95 CPIEAGNFVLSHAETLPGYTPPGVY 119 (151)
Q Consensus 95 CPv~~G~~~~~~~~~ip~~~P~g~y 119 (151)
+...+-.|.+..+..-++.+|+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~p~ip~ns~ 134 (212)
T PF11912_consen 110 SSYSPSNYYYISSCSDNPYIPSNSY 134 (212)
T ss_pred cccCCCCeEEEEEEecCCcCCCccE
Confidence 4444445777776666777787766
No 82
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=42.09 E-value=1.3e+02 Score=23.22 Aligned_cols=102 Identities=14% Similarity=0.234 Sum_probs=57.7
Q ss_pred cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEEEeCC-
Q 031870 35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPG- 112 (151)
Q Consensus 35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~~ip~- 112 (151)
.+++.++.+...|-+-|.++.+.++|.-=..+..+ .+++. ++|..+--..+.-+-...--|+..|...|.+...-|.
T Consensus 3 iv~llsi~VlnnpaKf~DPykFeitFeClE~lK~dlEwklt-Yvgs~~S~~~DQvLd~ilVgPiP~G~nkFvf~ADpP~v 81 (279)
T COG5137 3 IVKLLSIEVLNNPAKFGDPYKFEITFECLEELKCDLEWKLT-YVGSVHSDENDQVLDEILVGPIPKGKNKFVFDADPPDV 81 (279)
T ss_pred eeeeEEEEeecChhhcCCCeeeEEEEEEhhhhcCCceEEEE-EeeccccccchhhhhheeeccccccceeEEeecCCCCc
Confidence 57888999999999999999999999865555444 34443 2333432222222222345688888555555543343
Q ss_pred -CCCCe-EEEEEEEEEeC--CCCEEEEEE
Q 031870 113 -YTPPG-VYTLKMKMIGK--NGYQLTCFS 137 (151)
Q Consensus 113 -~~P~g-~y~v~~~l~d~--~~~~i~C~~ 137 (151)
.+|.. -+-+++.|..- +|+++.-+.
T Consensus 82 ~liPlse~~gvTvILlsc~Y~g~eFvRvG 110 (279)
T COG5137 82 NLIPLSEMFGVTVILLSCRYKGQEFVRVG 110 (279)
T ss_pred cccchhhhhceeEEEEEEeecCceeEEEE
Confidence 24422 13334443321 456554443
No 83
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=41.54 E-value=76 Score=19.28 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=14.7
Q ss_pred CCeEEEEEEEEEeCCCCE
Q 031870 115 PPGVYTLKMKMIGKNGYQ 132 (151)
Q Consensus 115 P~g~y~v~~~l~d~~~~~ 132 (151)
-+|.|+++++..|.+|..
T Consensus 55 ~~G~y~v~l~v~d~~g~~ 72 (81)
T cd00146 55 KPGTYTVTLTVTNAVGSS 72 (81)
T ss_pred CCcEEEEEEEEEeCCCCE
Confidence 379999999999976653
No 84
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.49 E-value=1.4e+02 Score=21.93 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=14.9
Q ss_pred EEEEEEeC-CCCCCeEEEEEEEEEeCCC
Q 031870 104 LSHAETLP-GYTPPGVYTLKMKMIGKNG 130 (151)
Q Consensus 104 ~~~~~~ip-~~~P~g~y~v~~~l~d~~~ 130 (151)
|..++..+ +..++|.|.|++ +|++|
T Consensus 80 YQVSW~~e~k~a~sG~y~V~~--fDEeg 105 (167)
T PF05404_consen 80 YQVSWTEEHKKASSGTYEVKF--FDEEG 105 (167)
T ss_pred eEEEEEechhhccCCceEEEE--eChHH
Confidence 44444444 346789898765 55543
No 85
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=40.88 E-value=69 Score=20.98 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=19.7
Q ss_pred CCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCC
Q 031870 95 CPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNG 130 (151)
Q Consensus 95 CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~ 130 (151)
-++++| +|++++-+..... -.+++++.+.++
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~-----~~~~~~~~~~~~ 87 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG-----GTVSVSLRDEDG 87 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS-----EEEEEEEEESST
T ss_pred eEecCCCEEEEEEEEEeCCC-----CEEEEEEEEcCC
Confidence 457888 7888888777765 445555555444
No 86
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=39.62 E-value=49 Score=28.67 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.6
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||+.|| .|+|.++.
T Consensus 84 TQcpI~PG~sf~Y~f~~ 100 (538)
T TIGR03390 84 SQWPIPPGHFFDYEIKP 100 (538)
T ss_pred ccCCCCCCCcEEEEEEe
Confidence 78999999 78888765
No 87
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.06 E-value=40 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=20.1
Q ss_pred CcceehHHHHHHhhhhcccccceeecCCCCCCCccEEEeE
Q 031870 1 MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQ 40 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~~~~~~~~~~C~~~~~~~~~v~I~~ 40 (151)
||+++..++++.+++. .+...|..=. .|..+..++++.
T Consensus 1 MKkil~~ilall~~ii-~a~~~~~~~~-~d~fnpyvk~~~ 38 (113)
T COG5294 1 MKKILIGILALLLIII-GALFIFYNIN-YDRFNPYVKITD 38 (113)
T ss_pred CcchHHHHHHHHHHHH-hhheEEEecc-cCCCCceEEEec
Confidence 8988777776666643 2233444432 123445565544
No 88
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.63 E-value=19 Score=26.51 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=20.8
Q ss_pred ceEEEcc-cCCCCCCcCCCCCCCC--cEEEEEE
Q 031870 78 FGIRVHS-ETHDICEEVSCPIEAG--NFVLSHA 107 (151)
Q Consensus 78 ~~~~v~~-~~~d~C~~~~CPv~~G--~~~~~~~ 107 (151)
+.+++.. .-.+.|...+||+-.| .|+|--.
T Consensus 70 NRiNLiYGTise~Cte~sCP~MsGG~rYEY~Wq 102 (217)
T KOG1903|consen 70 NRINLIYGTISEFCTETSCPVMSGGPRYEYRWQ 102 (217)
T ss_pred hhhHhhhhhHhhhccccCCCcccCCCcceeEec
Confidence 3344433 3468999999999998 5777543
No 89
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=38.56 E-value=45 Score=19.85 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=14.1
Q ss_pred CeEEEEEEEEEeCCCC
Q 031870 116 PGVYTLKMKMIGKNGY 131 (151)
Q Consensus 116 ~g~y~v~~~l~d~~~~ 131 (151)
+|.|+|+++..|..|.
T Consensus 51 ~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 51 PGTYTVTLTVTNGVGS 66 (69)
T ss_dssp SEEEEEEEEEEETTSE
T ss_pred CeEEEEEEEEEECCCC
Confidence 7999999999998764
No 90
>PRK09810 entericidin A; Provisional
Probab=38.49 E-value=15 Score=20.53 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=4.8
Q ss_pred CcceehHHH
Q 031870 1 MNRQLLLLF 9 (151)
Q Consensus 1 m~~~~~ll~ 9 (151)
||+++.+++
T Consensus 2 Mkk~~~l~~ 10 (41)
T PRK09810 2 MKRLIVLVL 10 (41)
T ss_pred hHHHHHHHH
Confidence 565555543
No 91
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=37.89 E-value=65 Score=23.22 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=26.3
Q ss_pred cEEEEEEEEEceeecCeE-EEEEEEEceE-EE---cccCCCCCCcCCCC
Q 031870 53 PAIFNISAVTDRSVSGGK-VMIEVRYFGI-RV---HSETHDICEEVSCP 96 (151)
Q Consensus 53 ~~~i~~~~~~~~~i~~~~-~~v~~~~~~~-~v---~~~~~d~C~~~~CP 96 (151)
...+.+..++....++.+ ..++++++|+ .+ +....+.+-...||
T Consensus 54 ~yEV~L~vtvta~~~~~t~FlvEv~qaGIF~i~nipee~~~~~L~i~CP 102 (149)
T PRK13031 54 TYETVLTLEVKVENDGMVAFEAEVKQAGIFTVANMQEAQIEHAKKAFCP 102 (149)
T ss_pred cEEEEEEEEEEEEeCCceEEEEEEeEeeEEEEcCCCHHHHHHHHhcCCc
Confidence 355555555554455555 5678889885 33 44455555557787
No 92
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=37.65 E-value=95 Score=18.83 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCCcEEEEEEEEeCCC----CCCeEEEEEEEEEeC-CCC
Q 031870 98 EAGNFVLSHAETLPGY----TPPGVYTLKMKMIGK-NGY 131 (151)
Q Consensus 98 ~~G~~~~~~~~~ip~~----~P~g~y~v~~~l~d~-~~~ 131 (151)
++|.|+|+.+..-... +=...|.+++.+.|. +|+
T Consensus 8 ~~G~Y~YtV~E~~g~~~gvtYD~~~~~vtV~V~~~~~G~ 46 (64)
T TIGR03786 8 KVGTYTYTITEVKGKEPGVTYDTTVHTVTVTVTDDEQGK 46 (64)
T ss_pred CCeEEEEEEEEeCCCCCCeEecCCEEEEEEEEEECCCCc
Confidence 5788999888643321 223467888888886 444
No 93
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=36.92 E-value=58 Score=22.87 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=22.3
Q ss_pred eCCCCCCCCcEEEE--EEEEEceeecCeEEEEE
Q 031870 44 IPDPVVTGKPAIFN--ISAVTDRSVSGGKVMIE 74 (151)
Q Consensus 44 ~Pc~~~~G~~~~i~--~~~~~~~~i~~~~~~v~ 74 (151)
+-||+++|++++.. .++-..+ ...+.+.+.
T Consensus 81 s~CP~~kGet~~Y~~p~slpi~~-yP~~~y~V~ 112 (130)
T cd00915 81 SFCGALKGETVYYVGPFSFKGIL-IPQGQYRCV 112 (130)
T ss_pred ccCCccCCceEEEeeeecccccc-cCCccEEEE
Confidence 57999999999988 6666556 666655554
No 94
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=35.43 E-value=28 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=13.0
Q ss_pred CCccEEEeEEEeeCCC--CCCCCcEEEEEE
Q 031870 32 ENFPLKVQQIKIIPDP--VVTGKPAIFNIS 59 (151)
Q Consensus 32 ~~~~v~I~~~~~~Pc~--~~~G~~~~i~~~ 59 (151)
....+.+++-..+|.. +++|+++++++.
T Consensus 21 ~~v~I~~~~~~f~P~~i~v~~G~~v~l~~~ 50 (104)
T PF13473_consen 21 QTVTITVTDFGFSPSTITVKAGQPVTLTFT 50 (104)
T ss_dssp ---------EEEES-EEEEETTCEEEEEEE
T ss_pred ccccccccCCeEecCEEEEcCCCeEEEEEE
Confidence 3456667777778865 467888887754
No 95
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=34.86 E-value=68 Score=21.48 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCCeEEEEEEEEE
Q 031870 105 SHAETLPGYTPPGVYTLKMKMI 126 (151)
Q Consensus 105 ~~~~~ip~~~P~g~y~v~~~l~ 126 (151)
.+.+.+|..++.|.|+++++=.
T Consensus 65 ~l~~~lPa~L~~G~Y~l~V~Tq 86 (102)
T PF14734_consen 65 RLIFILPADLAAGEYTLEVRTQ 86 (102)
T ss_pred EEEEECcCccCceEEEEEEEEE
Confidence 4456799989999999988754
No 96
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=34.66 E-value=65 Score=24.70 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=6.8
Q ss_pred CCCeEEEEEEEEE
Q 031870 114 TPPGVYTLKMKMI 126 (151)
Q Consensus 114 ~P~g~y~v~~~l~ 126 (151)
+|+|.|++++...
T Consensus 167 lp~G~Yt~~V~A~ 179 (225)
T PRK06655 167 LPDGNYTIKASAS 179 (225)
T ss_pred CCCeeEEEEEEEE
Confidence 4555555555544
No 97
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=32.41 E-value=1.3e+02 Score=18.72 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=7.2
Q ss_pred EEEEEEEEceEE
Q 031870 70 KVMIEVRYFGIR 81 (151)
Q Consensus 70 ~~~v~~~~~~~~ 81 (151)
.+.+...+++|.
T Consensus 14 ~V~v~G~F~~W~ 25 (79)
T cd02859 14 EVYVTGSFDNWK 25 (79)
T ss_pred EEEEEEEcCCCC
Confidence 466666666663
No 98
>PF10182 Flo11: Flo11 domain; InterPro: IPR018789 This presumed domain is found at the N terminus of the Saccharomyces cerevisiae (Baker's yeast) Flo11 protein.
Probab=32.30 E-value=1.9e+02 Score=20.70 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=21.2
Q ss_pred CCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe
Q 031870 32 ENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG 69 (151)
Q Consensus 32 ~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~ 69 (151)
+...+.|++++-- .+....|+++|..++.+...
T Consensus 18 p~~~~~v~~V~~v-----~dn~Y~Vti~f~~~~si~l~ 50 (152)
T PF10182_consen 18 PNASFDVSSVEWV-----GDNTYEVTINFQGDESIPLK 50 (152)
T ss_pred CceEEEEeEEEEe-----cCCeEEEEEEEEEccccchh
Confidence 4567888888743 34456777777776665443
No 99
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=32.26 E-value=32 Score=25.34 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=10.9
Q ss_pred CCCCCcEEEEEEEEE
Q 031870 48 VVTGKPAIFNISAVT 62 (151)
Q Consensus 48 ~~~G~~~~i~~~~~~ 62 (151)
++.|+.++++..+..
T Consensus 86 p~~gd~V~v~Y~~~~ 100 (177)
T TIGR03516 86 PEFGDLVTFEYDIRA 100 (177)
T ss_pred CCCCCEEEEEEEEEe
Confidence 567888888877764
No 100
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=32.08 E-value=79 Score=27.37 Aligned_cols=16 Identities=31% Similarity=0.833 Sum_probs=13.3
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||+.|| .|+|.+..
T Consensus 78 Tq~pI~PG~s~~Y~f~~ 94 (539)
T TIGR03389 78 TQCPIQPGQSYVYNFTI 94 (539)
T ss_pred ccCCcCCCCeEEEEEEe
Confidence 68999999 78777764
No 101
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=31.91 E-value=1.8e+02 Score=20.29 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=18.8
Q ss_pred CeEEEEEEEEEeCCCCEEEEEEEEEEEccc
Q 031870 116 PGVYTLKMKMIGKNGYQLTCFSFKFKIGFG 145 (151)
Q Consensus 116 ~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~ 145 (151)
.|.|.+.|+++|..|++..=+++.-.+...
T Consensus 48 ~gqyyVpF~V~N~gg~TAasV~V~geL~~~ 77 (122)
T TIGR02588 48 TGQYYVPFAIHNLGGTTAAAVNIRGELRQA 77 (122)
T ss_pred CCEEEEEEEEEeCCCcEEEEEEEEEEEccC
Confidence 355777777777666666666665555543
No 102
>PRK13792 lysozyme inhibitor; Provisional
Probab=31.81 E-value=94 Score=21.76 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=5.3
Q ss_pred CCEEEEEE
Q 031870 130 GYQLTCFS 137 (151)
Q Consensus 130 ~~~i~C~~ 137 (151)
++.+.|.+
T Consensus 119 ~~~~~c~~ 126 (127)
T PRK13792 119 TDGVACKE 126 (127)
T ss_pred CCCeeeec
Confidence 55688864
No 103
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=31.40 E-value=28 Score=29.76 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=11.8
Q ss_pred CcceehHHHHHHhhh
Q 031870 1 MNRQLLLLFTFYVLV 15 (151)
Q Consensus 1 m~~~~~ll~~~~l~~ 15 (151)
||+.|||+++|-|..
T Consensus 1 mktsill~~lwgls~ 15 (514)
T PF07263_consen 1 MKTSILLMFLWGLSC 15 (514)
T ss_pred CcceeHHHHHHHhhc
Confidence 999999988776554
No 104
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=31.20 E-value=2e+02 Score=20.70 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=23.9
Q ss_pred CCCCCCC-cEEEEEEE-EeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870 94 SCPIEAG-NFVLSHAE-TLPGYTPPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 94 ~CPv~~G-~~~~~~~~-~ip~~~P~g~y~v~~~l~d~~~~~i 133 (151)
.=|+.+| +.+....+ .+.+..-.+-.+.+..+.|++|+.+
T Consensus 94 ~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V 135 (166)
T PRK13691 94 HKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELV 135 (166)
T ss_pred eCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEE
Confidence 3477888 55555543 2222111245788888889888863
No 105
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=30.75 E-value=28 Score=22.18 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=10.5
Q ss_pred CcceehHHHHHHhhhh
Q 031870 1 MNRQLLLLFTFYVLVS 16 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~ 16 (151)
||.++.++++++.+..
T Consensus 1 MKK~~~~~~~i~~l~~ 16 (80)
T PF11106_consen 1 MKKIIYGLFAILALAS 16 (80)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 8977776665555543
No 106
>PLN02191 L-ascorbate oxidase
Probab=30.33 E-value=72 Score=27.97 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=13.0
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
+.||+.|| .|+|.++.
T Consensus 99 tq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 99 TQCAINPGETFTYKFTV 115 (574)
T ss_pred ccCCcCCCCeEEEEEEC
Confidence 67999999 78887763
No 107
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=29.22 E-value=2.6e+02 Score=23.49 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCCCC-cEEEEEEEEeCCCCCC--------eEEEEEEEEEeC--CCCEEEEEEEEEEEc
Q 031870 96 PIEAG-NFVLSHAETLPGYTPP--------GVYTLKMKMIGK--NGYQLTCFSFKFKIG 143 (151)
Q Consensus 96 Pv~~G-~~~~~~~~~ip~~~P~--------g~y~v~~~l~d~--~~~~i~C~~~~~~i~ 143 (151)
-++|| .-+|.+++.+|+.+|+ ..|.+.+.+.-. .+...-=+.++++|.
T Consensus 114 ~L~pge~k~f~~~~~lP~~lPPsy~g~~i~~~Y~l~vg~~~~~~~~~~~~~~~~Pi~v~ 172 (415)
T PF08737_consen 114 RLAPGESKSFHFSFTLPKDLPPSYRGKAIKISYSLVVGTQRGSSVNSKVKSIRVPIRVL 172 (415)
T ss_pred EECCCCcEEEEEEEeCCCCCCCCCcCcEEEEEEEEEEEEEEcCCCCcceEEEEeCEEEe
Confidence 47899 6788889999988875 346666555431 223344556666665
No 108
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=28.76 E-value=1.8e+02 Score=19.31 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCC-cEEEEEEEEeCCCC-CCeEEEEEEEEEeCCCCEE
Q 031870 97 IEAG-NFVLSHAETLPGYT-PPGVYTLKMKMIGKNGYQL 133 (151)
Q Consensus 97 v~~G-~~~~~~~~~ip~~~-P~g~y~v~~~l~d~~~~~i 133 (151)
+.|| ...+.+.+.+|+.. ..+.-.+++++.|++++..
T Consensus 70 v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~ 108 (118)
T PF11614_consen 70 VPPGETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEI 108 (118)
T ss_dssp E-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEE
T ss_pred ECCCCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEE
Confidence 5788 78999999999864 4555688888876555544
No 109
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=28.33 E-value=89 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=8.4
Q ss_pred CcceehHHHHHHhhhh
Q 031870 1 MNRQLLLLFTFYVLVS 16 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~ 16 (151)
||++++.++.+.++.+
T Consensus 1 m~~~~~~~~~~~~~~~ 16 (171)
T PRK09934 1 MRRVFFACFCGLLWSP 16 (171)
T ss_pred ChhHHHHHHHHHhhCh
Confidence 8866655544434433
No 110
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=28.21 E-value=22 Score=20.57 Aligned_cols=9 Identities=11% Similarity=0.567 Sum_probs=5.0
Q ss_pred CcceehHHH
Q 031870 1 MNRQLLLLF 9 (151)
Q Consensus 1 m~~~~~ll~ 9 (151)
||+.+.+++
T Consensus 2 mKk~i~~i~ 10 (48)
T PRK10081 2 VKKTIAAIF 10 (48)
T ss_pred hHHHHHHHH
Confidence 566555534
No 111
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.08 E-value=31 Score=23.36 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=7.4
Q ss_pred CcceehHHHHHHh
Q 031870 1 MNRQLLLLFTFYV 13 (151)
Q Consensus 1 m~~~~~ll~~~~l 13 (151)
||.+++|++++++
T Consensus 1 MKk~~ll~~~ll~ 13 (114)
T PF11777_consen 1 MKKIILLASLLLL 13 (114)
T ss_pred CchHHHHHHHHHH
Confidence 8866666543333
No 112
>PF05452 Clavanin: Clavanin; InterPro: IPR008453 This family consists of clavanin proteins from the haemocytes of the invertebrate Styela clava (Sea squirt), a solitary tunicate. The family is made up of four alpha-helical antimicrobial peptides, clavanins A, B, C and D. The tunicate peptides resemble magainins in size, primary sequence and antibacterial activity. Synthetic clavanin A displays comparable antimicrobial activity to magainins and cecropins. The presence of alpha-helical antimicrobial peptides in the haemocytes of a urochordate suggests that such peptides are primeval effectors of innate immunity in the vertebrate lineage [].; GO: 0005576 extracellular region
Probab=27.85 E-value=36 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=8.1
Q ss_pred CcceehHHHHHH
Q 031870 1 MNRQLLLLFTFY 12 (151)
Q Consensus 1 m~~~~~ll~~~~ 12 (151)
||+++++|+++-
T Consensus 1 mkt~ilillilg 12 (80)
T PF05452_consen 1 MKTIILILLILG 12 (80)
T ss_pred CceeehhHHHHh
Confidence 887777766443
No 113
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.75 E-value=1.2e+02 Score=18.74 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=6.2
Q ss_pred CCCCCcEEEEEE
Q 031870 96 PIEAGNFVLSHA 107 (151)
Q Consensus 96 Pv~~G~~~~~~~ 107 (151)
|+.+|.|.|++.
T Consensus 43 ~l~~G~y~Ykf~ 54 (82)
T cd02861 43 ELRPGRYEYKFV 54 (82)
T ss_pred eCCCCcEEEEEE
Confidence 455555555543
No 114
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=27.14 E-value=77 Score=21.35 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=21.7
Q ss_pred CCCCCCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCC
Q 031870 93 VSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGY 131 (151)
Q Consensus 93 ~~CPv~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~ 131 (151)
..-|+..|..++.+. .+|+|.|.|.+ ++|++++
T Consensus 34 ~~~~~~~~~~~~~f~-----~lp~G~YAi~v-~hD~N~N 66 (112)
T PF09912_consen 34 VKVPAKGGTVTITFE-----DLPPGTYAIAV-FHDENGN 66 (112)
T ss_pred EEEEcCCCcEEEEEC-----CCCCccEEEEE-EEeCCCC
Confidence 355666665554432 35789999988 7787654
No 115
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=25.65 E-value=1.3e+02 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=25.7
Q ss_pred CCcEEEEEEEEeCCCC--CCeEEEEEEEEEeC-CCCEEEEEEEEEEEcc
Q 031870 99 AGNFVLSHAETLPGYT--PPGVYTLKMKMIGK-NGYQLTCFSFKFKIGF 144 (151)
Q Consensus 99 ~G~~~~~~~~~ip~~~--P~g~y~v~~~l~d~-~~~~i~C~~~~~~i~~ 144 (151)
.|.+.|+ +|... -.|.++.++.+... +++.+.=.+|.+.|..
T Consensus 81 ~G~i~y~----lp~~~l~~~G~v~a~~~i~~~~~~~~~~t~~F~F~V~~ 125 (170)
T PF10651_consen 81 NGIIQYT----LPDEFLKHVGKVKAQLFIYYNGDGQSISTANFTFEVED 125 (170)
T ss_dssp TTEEEEE------TTTTHSSEEEEEEEEEEEESSSEEEE---EEEEEE-
T ss_pred CcEEEEE----ECHHHhccCcEEEEEEEEEECCCCCEEEEeeEEEEEec
Confidence 4666666 55432 37999999999875 6777766667776664
No 116
>PRK10965 multicopper oxidase; Provisional
Probab=25.60 E-value=94 Score=26.91 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=12.8
Q ss_pred CCCCCCCC-cEEEEEEE
Q 031870 93 VSCPIEAG-NFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G-~~~~~~~~ 108 (151)
..||+.|| .++|.+..
T Consensus 116 pq~~I~PG~s~~Y~f~~ 132 (523)
T PRK10965 116 PQGIIAPGGKRTVTFTV 132 (523)
T ss_pred CCCCCCCCCEEEEEecc
Confidence 47999999 78877654
No 117
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=25.14 E-value=1.3e+02 Score=16.60 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=18.4
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCC
Q 031870 106 HAETLPGYTPPGVYTLKMKMIGKNG 130 (151)
Q Consensus 106 ~~~~ip~~~P~g~y~v~~~l~d~~~ 130 (151)
....+....|...|.++++..+..|
T Consensus 57 ~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 57 TSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred cEEEEeCcCCCCEEEEEEEEEcccC
Confidence 3455667777789999999887544
No 118
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=24.97 E-value=2.4e+02 Score=24.67 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=35.9
Q ss_pred CCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEEEeCCCCCCeEEEEEEEE
Q 031870 49 VTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKM 125 (151)
Q Consensus 49 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~~ip~~~P~g~y~v~~~l 125 (151)
..++.+.+++.+.-+...+.....+.+.++|..+-....+. ..|.-.-.+++.||...-.+.-++++.+
T Consensus 339 ~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~--------~~~~~~~~~~v~iP~~~~~~~N~l~~~f 407 (605)
T PF03170_consen 339 WDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTP--------ADGAGFDRYTVSIPRLLLPGRNQLQFEF 407 (605)
T ss_pred cCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCC--------CCCCccceeEEecCchhcCCCcEEEEEE
Confidence 35777777777776654544455666677776553222111 2233334444556654434444444443
No 119
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=24.76 E-value=1.3e+02 Score=17.81 Aligned_cols=22 Identities=23% Similarity=0.687 Sum_probs=17.0
Q ss_pred EeCCCCCCeEEEEEEEEEeCCC
Q 031870 109 TLPGYTPPGVYTLKMKMIGKNG 130 (151)
Q Consensus 109 ~ip~~~P~g~y~v~~~l~d~~~ 130 (151)
.+....|.-.|.++++..+..|
T Consensus 59 ~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 59 TITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp EEESCCTTSEEEEEEEEEETTE
T ss_pred eeccCCCCCEEEEEEEEEeCCc
Confidence 3556678888999999988765
No 120
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.65 E-value=1.9e+02 Score=20.27 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=17.6
Q ss_pred CCCCCCC-cEEEEEE-EEeCCCCCCeEEEEEEEEEe
Q 031870 94 SCPIEAG-NFVLSHA-ETLPGYTPPGVYTLKMKMIG 127 (151)
Q Consensus 94 ~CPv~~G-~~~~~~~-~~ip~~~P~g~y~v~~~l~d 127 (151)
.=|+.|| +++..+. +.-|.. .|.|+..+++.-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~--~G~Y~f~v~a~p 129 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRS--GGTYQFNVTAFP 129 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCC--CCeEEEEEEEEC
Confidence 4577777 5555552 223322 466776666663
No 121
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.58 E-value=38 Score=19.17 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=4.4
Q ss_pred CcceehHHH
Q 031870 1 MNRQLLLLF 9 (151)
Q Consensus 1 m~~~~~ll~ 9 (151)
||+.+++++
T Consensus 2 mk~t~l~i~ 10 (44)
T COG5510 2 MKKTILLIA 10 (44)
T ss_pred chHHHHHHH
Confidence 666444433
No 122
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=24.24 E-value=2.4e+02 Score=19.33 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=26.4
Q ss_pred CCCCCCC-cEEEEEEEE-e-CCCCC-CeEEEEEEEEEeCCCCEEEEEE
Q 031870 94 SCPIEAG-NFVLSHAET-L-PGYTP-PGVYTLKMKMIGKNGYQLTCFS 137 (151)
Q Consensus 94 ~CPv~~G-~~~~~~~~~-i-p~~~P-~g~y~v~~~l~d~~~~~i~C~~ 137 (151)
.=|+.+| +.+...++. + ++.-+ .+..+++..+.|++|+.+.=.+
T Consensus 86 ~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~ 133 (142)
T cd03452 86 LEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYD 133 (142)
T ss_pred CCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEE
Confidence 5688888 666655542 2 22212 2567788888888887653333
No 123
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=24.06 E-value=36 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=14.5
Q ss_pred CcceehHHHHHHhhhhcccccce
Q 031870 1 MNRQLLLLFTFYVLVSSIQAIDF 23 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~~~~~~~~ 23 (151)
|.|+|+.++++...++.++..+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (153)
T TIGR02738 1 MLRKLLIVLLLLAGLAQASTLDE 23 (153)
T ss_pred CchHHHHHHHHHHHHHhcccHHH
Confidence 67777777666655665555444
No 124
>PRK10449 heat-inducible protein; Provisional
Probab=23.71 E-value=47 Score=23.35 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=9.4
Q ss_pred CcceehHHHHHHhhhh
Q 031870 1 MNRQLLLLFTFYVLVS 16 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~ 16 (151)
||+++.++++..++.+
T Consensus 1 mk~~~~~~~~~~~l~~ 16 (140)
T PRK10449 1 MKKVVALVALSLLMAG 16 (140)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 8877755544444444
No 125
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=23.58 E-value=1.4e+02 Score=16.39 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=17.1
Q ss_pred ccEEEeEEEee---------CCCCCCCCcEEEEEEE
Q 031870 34 FPLKVQQIKII---------PDPVVTGKPAIFNISA 60 (151)
Q Consensus 34 ~~v~I~~~~~~---------Pc~~~~G~~~~i~~~~ 60 (151)
..+.|.++..+ .-++.+|+...|++.|
T Consensus 10 ~~L~I~~v~tsCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 10 SPLVITDVQTSCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred CcEEEEEeeEccCCEEeeCCcceECCCCEEEEEEEC
Confidence 56677666543 2346778887777654
No 126
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=23.51 E-value=2.3e+02 Score=20.52 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.3
Q ss_pred EEEEEEeCCCCCCeEEEE
Q 031870 104 LSHAETLPGYTPPGVYTL 121 (151)
Q Consensus 104 ~~~~~~ip~~~P~g~y~v 121 (151)
.+.++.+|+.+-..+.++
T Consensus 77 ~~vqlsVP~~Ia~~pW~l 94 (161)
T PF10969_consen 77 EPVQLSVPEEIADAPWRL 94 (161)
T ss_pred CeEEEeCCHHHccCCcEE
Confidence 344555666554444444
No 127
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=22.75 E-value=4e+02 Score=21.27 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEE--EeCCCCEE--EEEEEEEEEc
Q 031870 95 CPIEAG-NFVLSHAETLPGYTPPGVYTLKMKM--IGKNGYQL--TCFSFKFKIG 143 (151)
Q Consensus 95 CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l--~d~~~~~i--~C~~~~~~i~ 143 (151)
=.+.|| +-++.|++.....+.+..|.+.+.+ .|.+|+.. .=++-.++|+
T Consensus 144 ~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g~~y~~~~fN~TV~Iv 197 (285)
T PF03896_consen 144 REVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDGNQYQVTVFNGTVTIV 197 (285)
T ss_pred cccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCCCEEEEEEecceEEEe
Confidence 367899 7899999888777767766665554 46677642 3355555554
No 128
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=22.75 E-value=32 Score=24.35 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=10.9
Q ss_pred CcceehHHHHHHhhhh
Q 031870 1 MNRQLLLLFTFYVLVS 16 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~ 16 (151)
|+|..+|++++||+-.
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (141)
T PRK12618 1 MMRLVLLLLLLLLAQP 16 (141)
T ss_pred ChhHHHHHHHHhCCcc
Confidence 6777777777776654
No 129
>PF02521 HP_OMP_2: Putative outer membrane protein; InterPro: IPR003678 Helicobacter pylori is a causative agent of gastritis and peptic ulceration in humans. As the first step towards development of a vaccine against H. pylori infection, many attempts have been made to identify protective antigens. Potential targets for vaccine development are H. pylori-specific proteins that are surface-exposed and highly antigenic. This family consists of putative outer membrane proteins from H. pylori.
Probab=22.67 E-value=3e+02 Score=23.66 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=19.7
Q ss_pred CcceehHHHHHHhhhhcccccceeecCC
Q 031870 1 MNRQLLLLFTFYVLVSSIQAIDFTYCGQ 28 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~~~~~~~~~~C~~ 28 (151)
||...++++.++++...+++.+++-=|.
T Consensus 1 mk~~~~~~~~l~~~~~~l~Afdyk~sG~ 28 (458)
T PF02521_consen 1 MKKLKFFLLFLLFLSSSLQAFDYKLSGK 28 (458)
T ss_pred CcchHHHHHHHHHHhhhhheEEEEEEEE
Confidence 7856666666666667788888877654
No 130
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=22.28 E-value=1.2e+02 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=9.7
Q ss_pred CCCCeEEEEEEEEEe
Q 031870 113 YTPPGVYTLKMKMIG 127 (151)
Q Consensus 113 ~~P~g~y~v~~~l~d 127 (151)
..|.|.|++++...+
T Consensus 161 ~l~~G~Yt~~V~A~~ 175 (223)
T PRK12813 161 PLPNGAYSFVVESYS 175 (223)
T ss_pred cCCCccEEEEEEEEe
Confidence 356677777776664
No 131
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=22.06 E-value=1.5e+02 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.5
Q ss_pred CCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEE
Q 031870 94 SCPIEAG-NFVLSHAETLPGYTPPGVYTLKMK 124 (151)
Q Consensus 94 ~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~ 124 (151)
+=|..+| .-+++.+.+.-..+-.|+|.|+++
T Consensus 47 PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~ 78 (153)
T KOG4680|consen 47 PNPPARGENATFSISGNTGETISEGKYVIEVS 78 (153)
T ss_pred CCCCCCCCccEEEEecccccEeeCCeEEEEEE
Confidence 5688899 788988888888888899888765
No 132
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=22.02 E-value=1.5e+02 Score=16.24 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=10.9
Q ss_pred CCeEEEEEEEEE--eCCCC
Q 031870 115 PPGVYTLKMKMI--GKNGY 131 (151)
Q Consensus 115 P~g~y~v~~~l~--d~~~~ 131 (151)
-+|.|+++++.. +.+|+
T Consensus 11 ~PG~Y~l~~~a~~~~~~G~ 29 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDGK 29 (41)
T ss_pred CCeEEEEEEEEEEEeCCCc
Confidence 468888877764 44554
No 133
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=22.01 E-value=1.9e+02 Score=20.22 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=12.3
Q ss_pred CCCCCCCCcEEEEEEE
Q 031870 93 VSCPIEAGNFVLSHAE 108 (151)
Q Consensus 93 ~~CPv~~G~~~~~~~~ 108 (151)
.++|+.+|.|.+....
T Consensus 90 ~~~~ip~G~Y~Lv~~~ 105 (125)
T PF11033_consen 90 LSFDIPKGDYQLVFQT 105 (125)
T ss_pred EEEecCCCcEEEEEEE
Confidence 5788889988877553
No 134
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=21.34 E-value=54 Score=20.50 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=7.9
Q ss_pred CcceehHHHHHHhhhh
Q 031870 1 MNRQLLLLFTFYVLVS 16 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~ 16 (151)
|| +|.+|++...+.+
T Consensus 1 MK-hFaiLilavVaSA 15 (78)
T PF11714_consen 1 MK-HFAILILAVVASA 15 (78)
T ss_pred Cc-hHHHHHHHHHHHH
Confidence 77 5555554444443
No 135
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=21.12 E-value=3.2e+02 Score=19.47 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=26.6
Q ss_pred CCCCCC-cEEEEEEEE-e-CCCCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 031870 95 CPIEAG-NFVLSHAET-L-PGYTPPGVYTLKMKMIGKNGYQLTCFSFK 139 (151)
Q Consensus 95 CPv~~G-~~~~~~~~~-i-p~~~P~g~y~v~~~l~d~~~~~i~C~~~~ 139 (151)
=|+.+| +.+....+. + ++. -.+-++.+.+++||+|+.+.=.+..
T Consensus 95 ~PV~~GDtL~~~~eV~~~~~~~-~~giv~~~~~v~Nq~Ge~V~~~~~~ 141 (159)
T PRK13692 95 KPIVAGDKLYCDVYVDSVREAH-GTQIIVTKNIVTNEEGDVVQETYTT 141 (159)
T ss_pred CCccCCCEEEEEEEEEEEEEcC-CceEEEEEEEEEcCCCCEEEEEEEE
Confidence 478889 666665542 2 221 2356888888889888864333333
No 136
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=21.05 E-value=52 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=11.5
Q ss_pred CcceehHHHHHHhhhh---cccccceee
Q 031870 1 MNRQLLLLFTFYVLVS---SIQAIDFTY 25 (151)
Q Consensus 1 m~~~~~ll~~~~l~~~---~~~~~~~~~ 25 (151)
||+.++|++++.|..+ ++....|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 28 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKSIPWQG 28 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCCCCCCC
Confidence 6645555443333333 344445643
No 137
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=20.94 E-value=2e+02 Score=17.17 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=13.3
Q ss_pred CeEEEEEEEEEeCCC
Q 031870 116 PGVYTLKMKMIGKNG 130 (151)
Q Consensus 116 ~g~y~v~~~l~d~~~ 130 (151)
+|.|++++++.|..|
T Consensus 54 ~G~y~v~l~v~n~~g 68 (79)
T smart00089 54 PGTYTVTLTVTNAVG 68 (79)
T ss_pred CcEEEEEEEEEcCCC
Confidence 689999999998777
No 138
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=20.82 E-value=1.8e+02 Score=16.47 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=12.0
Q ss_pred CCeEEEEEEEEEeCCC
Q 031870 115 PPGVYTLKMKMIGKNG 130 (151)
Q Consensus 115 P~g~y~v~~~l~d~~~ 130 (151)
..|.|++++++.|.+|
T Consensus 34 ~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 34 QPGTYTFTVTATDGSG 49 (49)
T ss_pred cccEEEEEEEEEcCCC
Confidence 4578888888887654
No 139
>TIGR00809 secB protein-export chaperone SecB. The archaeal Methanococcus jannaschii homolog MJ0357 has been shown (PubMed:14985117) to share many properties, including chaperone-like activity, and scores between trusted and noise.
Probab=20.43 E-value=1.1e+02 Score=21.77 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=23.8
Q ss_pred EEEEEEEEEceeecCeE-EEEEEEEceE-EE---cccCCCCCCcCCCC
Q 031870 54 AIFNISAVTDRSVSGGK-VMIEVRYFGI-RV---HSETHDICEEVSCP 96 (151)
Q Consensus 54 ~~i~~~~~~~~~i~~~~-~~v~~~~~~~-~v---~~~~~d~C~~~~CP 96 (151)
..+.+..++....++.+ ..++++++|+ .+ +....+.+-...||
T Consensus 52 ~EV~L~~~vtak~~~~~~Fl~Ev~~aGIF~i~~~~~e~l~~~L~i~cP 99 (140)
T TIGR00809 52 YEVVLNITVTARLEEYTAFLCEVKQAGVFNIIGIESEQMAHCLGVHCP 99 (140)
T ss_pred EEEEEEEEEEEecCCccEEEEEEEEEEEEEecCCCHHHHHHHHhcCCc
Confidence 45555555444444444 6788889885 43 33333444446776
No 140
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=20.35 E-value=5.1e+02 Score=21.61 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=28.8
Q ss_pred eeecCCCCCCCccEEEeEEEee----CCCCCCCCcEEEEEEEEEc-eeecC
Q 031870 23 FTYCGQYDEENFPLKVQQIKII----PDPVVTGKPAIFNISAVTD-RSVSG 68 (151)
Q Consensus 23 ~~~C~~~~~~~~~v~I~~~~~~----Pc~~~~G~~~~i~~~~~~~-~~i~~ 68 (151)
|+-=|..++......|+++++. |-++..|+.+.+++...-+ +.+..
T Consensus 73 Wq~~G~v~p~sri~viS~L~L~v~plP~~l~~gE~lk~ta~L~~d~~~i~~ 123 (374)
T TIGR03503 73 WQAIGKITPGNRVKVISNLRLEVEPLPSPLFQGETLKVTAKLLNDGEPLKL 123 (374)
T ss_pred cEEeeeeCCCCeEEEEeccEEEEecCCccccCCCeEEEEEEEecCCEEeec
Confidence 4444443334445566776654 6778899999999888753 33443
No 141
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=20.15 E-value=2.8e+02 Score=18.48 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=20.3
Q ss_pred CCCCCC-cEEEEEEEE-eCCCCCCeEEEEEEEEEeCCCCE
Q 031870 95 CPIEAG-NFVLSHAET-LPGYTPPGVYTLKMKMIGKNGYQ 132 (151)
Q Consensus 95 CPv~~G-~~~~~~~~~-ip~~~P~g~y~v~~~l~d~~~~~ 132 (151)
=|+-+| +.+....+. ....--.+..+++..+.|++|+.
T Consensus 79 ~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~ 118 (127)
T cd03453 79 KPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGK 118 (127)
T ss_pred CcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCE
Confidence 466677 555554431 11111124567777777877764
No 142
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=20.05 E-value=2.3e+02 Score=19.67 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.2
Q ss_pred EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 031870 102 FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 132 (151)
Q Consensus 102 ~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 132 (151)
..+++.+.+++ -.|.|.+.++.+|.+|+.
T Consensus 78 ~~W~~~~~~~~--~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 78 RLWEYDWPPPS--LPGEYTIMVRATDESGNV 106 (131)
T ss_dssp EEEEEEEEECS--HCCEEEEEEEEEETTS-B
T ss_pred ceeeeccCcCc--cccceEEEEEEeeccccc
Confidence 55677777775 369999999999988864
Done!