BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031871
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X57|A Chain A, Solution Structures Of The Hth Domain Of Human Edf-1
Protein
Length = 91
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 50/68 (73%)
Query: 83 CTDDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERA 142
+ DRV E+ K I Q R K LTQ LA INEKPQVI +YESG+AIPN Q+L K+ERA
Sbjct: 5 SSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERA 64
Query: 143 LGVKLRGK 150
+G+KLRGK
Sbjct: 65 IGLKLRGK 72
>pdb|2JVL|A Chain A, Nmr Structure Of The C-Terminal Domain Of Mbf1 Of
Trichoderm
Length = 107
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 88 VPSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 145
V E+ KAI Q R + +TQ++L + I E + YE G A P+Q IL+K+ER L V
Sbjct: 31 VGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNV 90
Query: 146 KLRG 149
KLRG
Sbjct: 91 KLRG 94
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 29.6 bits (65), Expect = 0.70, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 87 RVPSEL--KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 128
++PS++ +K + Q ND+KL + + + + + P+ +Q+Y+SGK
Sbjct: 405 KMPSQIVEEKGLTQI-NDEKLIEELVKKAMEQNPKAVQDYKSGK 447
>pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of
Hydroxyl Groups, Nmr, 20 Structures
Length = 64
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 105 LTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 145
L Q++LAQ + Q I++ E+GKA + L +L RALGV
Sbjct: 16 LNQAELAQKVGVDQQAIEQLENGKA-KRPRFLPELARALGV 55
>pdb|4HWG|A Chain A, Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
Rickettsia Bellii
Length = 385
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 83 CTDDRVPSELKKAIVQARNDKKLTQSQLAQ--LINEKPQVIQEYESGKAIP 131
C D RVP E+ + I+ +D +T ++ A+ LI E ++SG +P
Sbjct: 129 CFDQRVPEEINRKIIDHISDVNITLTEHARRYLIAEGLPAELTFKSGSHMP 179
>pdb|2IV1|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC 83
Query: 84 TDDRVPSELKKAIVQARNDKKLTQSQLAQLINEK 117
DDR+P++ + Q ++ + L L++EK
Sbjct: 84 IDDRIPTD--PTMYQFYEMLQVYGTTLKALVHEK 115
>pdb|1ZZ6|A Chain A, Crystal Structure Of Apo-hppe
pdb|1ZZ6|B Chain B, Crystal Structure Of Apo-hppe
pdb|1ZZ7|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ7|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ8|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|C Chain C, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ9|A Chain A, Crystal Structure Of Feii Hppe
pdb|1ZZ9|B Chain B, Crystal Structure Of Feii Hppe
pdb|1ZZ9|C Chain C, Crystal Structure Of Feii Hppe
pdb|1ZZB|A Chain A, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZB|B Chain B, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZC|A Chain A, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|1ZZC|B Chain B, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|2BNM|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNM|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNN|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNN|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNO|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNO|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|3SCF|A Chain A, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|B Chain B, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|C Chain C, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCG|A Chain A, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|B Chain B, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|C Chain C, Fe(Ii)-Hppe With R-Hpp
Length = 198
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLER 141
R K+ + LA L+ E P+ + +E+G+ + LT+L R
Sbjct: 19 REQVKMDHAALASLLGETPETVAAWENGEG--GELTLTQLGR 58
>pdb|2IUO|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IUO|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
Length = 156
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC 83
Query: 84 TDDRVPSE 91
DDR+P++
Sbjct: 84 IDDRIPTD 91
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
VIK A K DE VV A +G D+ +++A + KA S S+ N K+ E
Sbjct: 377 VIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQE 431
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
VIK A K DE VV A +G D+ +++A + KA S S+ N K+ E
Sbjct: 377 VIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQE 431
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
VIK A K DE VV A +G D+ +++A + KA S S+ N K+ E
Sbjct: 377 VIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQE 431
>pdb|2IVQ|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVQ|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
Length = 156
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC 83
Query: 84 TDDRVPSE 91
DDR+P++
Sbjct: 84 IDDRIPTD 91
>pdb|2IVB|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVB|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
Length = 156
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC 83
Query: 84 TDDRVPSE 91
DDR+P++
Sbjct: 84 IDDRIPTD 91
>pdb|2XCJ|A Chain A, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2XCJ|B Chain B, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2L49|A Chain A, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
pdb|2L49|B Chain B, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
Length = 99
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 139
+ + IV R + L++ QLA L + YESG++ P ++ +
Sbjct: 5 ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNI 52
>pdb|2IVG|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IVG|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
Length = 156
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC 83
Query: 84 TDDRVPSE 91
DDR+P++
Sbjct: 84 IDDRIPTD 91
>pdb|2IU7|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
pdb|2IU7|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In
The Catalytic Mechanism Of Cyanase
Length = 156
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC 83
Query: 84 TDDRVPSE 91
DDR+P++
Sbjct: 84 IDDRIPTD 91
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From
Campylobacter Jejuni, Northeast Structural Genomics
Target Br19
Length = 370
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 79 SVLYCTDDRVPSELKKAIVQARNDK 103
S ++C D ++ S+ K I+ ARN K
Sbjct: 176 SEIFCLDPKLESDFKNEILNARNSK 200
>pdb|3MLF|A Chain A, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|B Chain B, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|C Chain C, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|D Chain D, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|E Chain E, Putative Transcriptional Regulator From Staphylococcus
Aureus
Length = 111
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVK 146
S K + + R D LTQ +L L + IQ E +L+K A VK
Sbjct: 20 FQSNAXKTLKELRTDYGLTQKELGDLFKVSSRTIQNXEKDSTNIKDSLLSKYXSAFNVK 78
>pdb|1DW9|A Chain A, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|B Chain B, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|C Chain C, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|D Chain D, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|E Chain E, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|F Chain F, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|G Chain G, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|H Chain H, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|I Chain I, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|J Chain J, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DWK|A Chain A, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|B Chain B, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|C Chain C, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|D Chain D, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|E Chain E, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|F Chain F, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|G Chain G, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|H Chain H, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|I Chain I, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|J Chain J, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
Length = 156
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALL--LSVLYC 83
KKD A G V + G + + L KLD D +++ LL + + C
Sbjct: 24 KKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQXIPLRGC 83
Query: 84 TDDRVPSE 91
DDR+P++
Sbjct: 84 IDDRIPTD 91
>pdb|3CEC|A Chain A, Crystal Structure Of A Putative Antidote Protein Of
Plasmid Maintenance System (Npun_f2943) From Nostoc
Punctiforme Pcc 73102 At 1.60 A Resolution
Length = 104
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 83 CTDDRV--PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLE 140
TDDR+ P + I +D + + A+++ Q IQE +G+ I +L
Sbjct: 8 ITDDRLVRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLG 67
Query: 141 RALG 144
+ALG
Sbjct: 68 KALG 71
>pdb|3GN5|B Chain B, Structure Of The E. Coli Protein Mqsa (YgitB3021)
Length = 133
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 96 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERAL 143
IV+ R LTQ + +++ YE G A P+ + KL R L
Sbjct: 76 IVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRVL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,773,196
Number of Sequences: 62578
Number of extensions: 122525
Number of successful extensions: 429
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 42
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)