Query 031871
Match_columns 151
No_of_seqs 386 out of 2487
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvl_A TRMBF1; coactivator, he 99.7 2E-16 6.9E-21 110.8 9.0 83 59-150 11-95 (107)
2 2ewt_A BLDD, putative DNA-bind 99.6 1.6E-15 5.5E-20 97.2 6.8 62 88-149 5-68 (71)
3 3s8q_A R-M controller protein; 99.6 3.5E-15 1.2E-19 98.5 6.8 63 86-148 6-68 (82)
4 1x57_A Endothelial differentia 99.6 1.4E-14 4.7E-19 97.7 8.5 64 86-149 8-71 (91)
5 3g5g_A Regulatory protein; tra 99.6 4.4E-15 1.5E-19 102.7 6.2 62 87-148 24-85 (99)
6 2kpj_A SOS-response transcript 99.5 1.6E-14 5.5E-19 98.1 8.2 62 87-148 5-66 (94)
7 1y7y_A C.AHDI; helix-turn-heli 99.5 1.4E-14 4.8E-19 93.2 7.5 61 89-149 11-71 (74)
8 3kz3_A Repressor protein CI; f 99.5 1.2E-14 3.9E-19 96.0 7.0 61 89-149 10-70 (80)
9 3qq6_A HTH-type transcriptiona 99.5 8E-15 2.8E-19 96.8 6.1 62 87-148 6-68 (78)
10 3eus_A DNA-binding protein; st 99.5 2.3E-14 7.9E-19 96.2 7.9 58 89-146 12-69 (86)
11 3f6w_A XRE-family like protein 99.5 1.3E-14 4.3E-19 95.9 6.5 60 89-148 12-71 (83)
12 2b5a_A C.BCLI; helix-turn-heli 99.5 9.1E-15 3.1E-19 94.9 5.6 61 88-148 7-67 (77)
13 2k9q_A Uncharacterized protein 99.5 5.9E-15 2E-19 96.6 4.5 58 91-148 2-59 (77)
14 3b7h_A Prophage LP1 protein 11 99.5 2.2E-14 7.5E-19 93.3 7.1 60 89-148 5-65 (78)
15 3omt_A Uncharacterized protein 99.5 4.9E-15 1.7E-19 95.9 3.5 59 91-149 8-66 (73)
16 3op9_A PLI0006 protein; struct 99.5 1.1E-14 3.7E-19 102.0 5.1 61 88-148 6-66 (114)
17 2r1j_L Repressor protein C2; p 99.5 2E-14 6.9E-19 90.9 5.8 58 91-148 5-62 (68)
18 3vk0_A NHTF, transcriptional r 99.5 2.6E-14 8.9E-19 100.5 6.4 62 87-148 17-78 (114)
19 3ivp_A Putative transposon-rel 99.5 6E-14 2.1E-18 99.9 8.3 60 89-148 10-69 (126)
20 1adr_A P22 C2 repressor; trans 99.5 3.2E-14 1.1E-18 91.9 6.1 58 91-148 5-62 (76)
21 2a6c_A Helix-turn-helix motif; 99.5 8.5E-14 2.9E-18 92.7 8.2 60 89-148 16-76 (83)
22 3t76_A VANU, transcriptional r 99.5 5E-14 1.7E-18 95.9 7.0 59 90-149 23-81 (88)
23 2wiu_B HTH-type transcriptiona 99.5 3.9E-14 1.3E-18 94.2 6.1 60 89-148 10-69 (88)
24 3lfp_A CSP231I C protein; tran 99.5 3.3E-14 1.1E-18 97.2 5.7 57 92-148 2-62 (98)
25 3mlf_A Transcriptional regulat 99.5 1.3E-14 4.4E-19 102.2 3.6 64 86-149 18-81 (111)
26 1lmb_3 Protein (lambda repress 99.5 7E-14 2.4E-18 93.9 6.9 61 89-149 15-75 (92)
27 4ghj_A Probable transcriptiona 99.5 8.7E-14 3E-18 97.0 7.3 58 88-147 33-90 (101)
28 3f52_A CLP gene regulator (CLG 99.5 5.4E-14 1.8E-18 98.8 6.0 62 87-148 24-85 (117)
29 2xi8_A Putative transcription 99.5 2E-14 6.9E-19 90.4 3.2 57 92-148 2-58 (66)
30 3bs3_A Putative DNA-binding pr 99.5 3.7E-14 1.3E-18 91.8 4.2 58 92-149 11-68 (76)
31 1r69_A Repressor protein CI; g 99.5 7.9E-14 2.7E-18 88.5 5.5 56 92-148 2-57 (69)
32 3trb_A Virulence-associated pr 99.5 1.6E-13 5.3E-18 96.0 7.1 59 90-148 12-71 (104)
33 1zug_A Phage 434 CRO protein; 99.4 9.4E-14 3.2E-18 88.6 4.4 57 91-148 3-59 (71)
34 2wus_R RODZ, putative uncharac 99.4 1.5E-13 5.1E-18 97.4 5.7 60 89-148 5-70 (112)
35 2ef8_A C.ECOT38IS, putative tr 99.4 3E-13 1E-17 89.0 6.8 60 89-148 8-71 (84)
36 2l49_A C protein; P2 bacteriop 99.4 1.1E-13 3.6E-18 94.2 4.5 59 90-148 3-63 (99)
37 1y9q_A Transcriptional regulat 99.4 2.6E-13 8.9E-18 102.6 6.8 61 88-148 8-68 (192)
38 2ict_A Antitoxin HIGA; helix-t 99.4 2E-13 6.9E-18 92.4 5.5 59 90-148 7-65 (94)
39 2o38_A Hypothetical protein; a 99.4 3.4E-13 1.2E-17 96.5 6.5 60 89-148 38-98 (120)
40 3fmy_A HTH-type transcriptiona 99.4 2E-13 6.9E-18 89.0 4.8 57 91-148 11-67 (73)
41 1b0n_A Protein (SINR protein); 99.4 3.7E-13 1.3E-17 93.1 6.1 57 92-148 2-59 (111)
42 3fym_A Putative uncharacterize 99.4 1.7E-13 5.9E-18 99.0 4.6 58 91-148 3-66 (130)
43 3cec_A Putative antidote prote 99.4 3.9E-13 1.3E-17 92.7 6.1 59 90-148 17-75 (104)
44 2eby_A Putative HTH-type trans 99.4 3.1E-13 1.1E-17 94.3 5.4 59 90-148 9-68 (113)
45 2bnm_A Epoxidase; oxidoreducta 99.4 6.4E-13 2.2E-17 100.7 7.5 62 87-148 6-68 (198)
46 2ppx_A AGR_C_3184P, uncharacte 99.4 1.4E-13 4.8E-18 94.5 3.5 58 90-148 29-86 (99)
47 2ofy_A Putative XRE-family tra 99.4 1.7E-12 5.7E-17 86.2 7.1 58 89-148 14-72 (86)
48 3r1f_A ESX-1 secretion-associa 99.3 1.3E-12 4.6E-17 95.3 6.0 60 89-148 5-76 (135)
49 3kxa_A NGO0477 protein, putati 99.3 5.8E-13 2E-17 97.6 4.0 59 90-148 67-125 (141)
50 3qwg_A ESX-1 secretion-associa 99.3 6.1E-12 2.1E-16 90.5 6.9 59 90-148 4-74 (123)
51 3u3w_A Transcriptional activat 99.3 4.6E-12 1.6E-16 99.6 6.2 58 90-148 4-61 (293)
52 3bd1_A CRO protein; transcript 99.3 2E-12 6.7E-17 85.0 3.4 52 94-147 2-55 (79)
53 4ich_A Transcriptional regulat 99.2 6.6E-13 2.2E-17 106.6 0.0 60 89-148 28-87 (311)
54 3pxp_A Helix-turn-helix domain 99.2 1.1E-11 3.7E-16 101.1 6.6 60 90-149 5-71 (292)
55 2awi_A PRGX; repressor, pherom 99.2 1.2E-11 4E-16 101.0 3.9 58 90-148 2-59 (317)
56 3bdn_A Lambda repressor; repre 99.1 2.5E-11 8.7E-16 94.1 4.8 60 89-148 15-74 (236)
57 3o9x_A Uncharacterized HTH-typ 99.1 3.5E-11 1.2E-15 86.3 4.6 55 93-148 73-127 (133)
58 2p5t_A Putative transcriptiona 99.1 4.8E-12 1.6E-16 93.6 0.0 57 92-148 2-58 (158)
59 2l1p_A DNA-binding protein SAT 99.1 4.8E-11 1.6E-15 79.8 4.5 53 89-145 19-71 (83)
60 2qfc_A PLCR protein; TPR, HTH, 99.1 1.5E-11 5.1E-16 96.7 2.1 58 90-148 4-61 (293)
61 1neq_A DNA-binding protein NER 99.0 2E-10 6.7E-15 75.6 4.8 53 93-148 11-63 (74)
62 2fjr_A Repressor protein CI; g 99.0 4.9E-10 1.7E-14 84.2 6.9 56 89-147 7-62 (189)
63 2auw_A Hypothetical protein NE 98.8 1E-08 3.4E-13 77.6 6.5 46 93-138 92-137 (170)
64 1dw9_A Cyanate lyase; cyanate 98.6 6.1E-08 2.1E-12 72.2 7.0 60 89-148 11-70 (156)
65 1nr3_A MTH0916, DNA-binding pr 98.6 9.9E-11 3.4E-15 83.4 -8.5 48 100-148 2-55 (122)
66 1rzs_A Antirepressor, regulato 98.4 3E-07 1E-11 57.8 4.8 41 104-147 10-50 (61)
67 2h8r_A Hepatocyte nuclear fact 98.3 2.4E-06 8.1E-11 66.9 7.8 52 88-139 28-79 (221)
68 1uxc_A FRUR (1-57), fructose r 98.3 2E-06 6.8E-11 55.0 5.9 44 105-148 1-50 (65)
69 3g7d_A PHPD; non heme Fe(II) d 98.2 1.2E-06 4E-11 72.5 5.3 57 92-148 231-288 (443)
70 1zx4_A P1 PARB, plasmid partit 98.2 5.3E-07 1.8E-11 69.3 1.8 54 89-143 10-79 (192)
71 2l8n_A Transcriptional repress 98.1 7.6E-06 2.6E-10 52.5 5.6 45 104-148 9-56 (67)
72 2pij_A Prophage PFL 6 CRO; tra 98.0 4.8E-06 1.6E-10 52.1 3.7 38 95-133 5-42 (67)
73 1ic8_A Hepatocyte nuclear fact 98.0 1.7E-05 5.9E-10 60.9 7.5 48 89-136 28-75 (194)
74 1s4k_A Putative cytoplasmic pr 98.0 2.3E-05 7.9E-10 55.6 7.0 49 93-141 5-55 (120)
75 2hin_A GP39, repressor protein 97.5 0.00016 5.5E-09 46.9 5.3 41 106-147 12-52 (71)
76 1jhf_A LEXA repressor; LEXA SO 97.5 0.0001 3.4E-09 55.7 4.3 38 89-126 8-48 (202)
77 2cw1_A SN4M; lambda CRO fold, 97.4 0.0002 6.8E-09 45.7 4.6 36 95-132 6-41 (65)
78 2l0k_A Stage III sporulation p 97.4 0.00016 5.6E-09 49.2 4.0 52 94-145 10-62 (93)
79 4ich_A Transcriptional regulat 97.3 0.00014 4.6E-09 57.8 3.3 114 16-129 31-165 (311)
80 1zs4_A Regulatory protein CII; 97.1 0.0006 2.1E-08 45.5 4.6 41 104-148 24-64 (83)
81 1xwr_A Regulatory protein CII; 96.8 7.4E-05 2.5E-09 51.4 -2.2 28 101-128 20-47 (97)
82 2ao9_A Phage protein; structur 96.6 0.0019 6.4E-08 47.9 3.9 38 104-143 48-86 (155)
83 2x48_A CAG38821; archeal virus 96.4 0.0059 2E-07 36.3 5.0 34 92-126 20-53 (55)
84 1tc3_C Protein (TC3 transposas 96.4 0.0074 2.5E-07 34.1 5.2 36 91-127 9-44 (51)
85 1jhg_A Trp operon repressor; c 96.4 0.0032 1.1E-07 43.5 3.8 55 90-144 42-98 (101)
86 3kjx_A Transcriptional regulat 95.6 0.015 5.3E-07 46.1 5.3 47 102-148 8-57 (344)
87 1jko_C HIN recombinase, DNA-in 95.6 0.013 4.3E-07 33.6 3.6 33 95-128 13-45 (52)
88 1pdn_C Protein (PRD paired); p 95.5 0.029 9.9E-07 37.9 5.7 40 86-126 16-55 (128)
89 2xsd_C POU domain, class 3, tr 95.4 0.033 1.1E-06 41.2 6.1 50 89-140 15-70 (164)
90 3h5t_A Transcriptional regulat 95.3 0.017 5.9E-07 46.2 4.4 45 102-146 7-54 (366)
91 1e3o_C Octamer-binding transcr 95.2 0.038 1.3E-06 40.6 5.9 49 89-139 9-63 (160)
92 1au7_A Protein PIT-1, GHF-1; c 95.2 0.029 1E-06 40.6 5.2 50 90-141 6-61 (146)
93 2w7n_A TRFB transcriptional re 95.1 0.04 1.4E-06 37.9 5.3 35 92-126 22-56 (101)
94 2ovg_A Phage lambda CRO; trans 95.1 0.015 5.2E-07 36.8 2.9 32 96-129 7-38 (66)
95 1u78_A TC3 transposase, transp 94.9 0.096 3.3E-06 36.1 6.9 76 30-126 24-101 (141)
96 2jn6_A Protein CGL2762, transp 94.7 0.064 2.2E-06 35.4 5.3 39 88-126 6-45 (97)
97 1k78_A Paired box protein PAX5 94.6 0.06 2.1E-06 38.0 5.4 40 86-126 31-70 (149)
98 2elh_A CG11849-PA, LD40883P; s 94.5 0.065 2.2E-06 35.0 4.9 37 89-126 24-60 (87)
99 3d1n_I POU domain, class 6, tr 94.4 0.2 6.7E-06 36.2 7.8 49 89-139 6-60 (151)
100 2glo_A Brinker CG9653-PA; prot 94.2 0.09 3.1E-06 31.7 4.8 37 89-126 7-47 (59)
101 2o20_A Catabolite control prot 94.1 0.0087 3E-07 47.3 0.0 45 103-147 4-51 (332)
102 1j9i_A GPNU1 DBD;, terminase s 94.0 0.038 1.3E-06 34.5 2.9 24 105-128 3-26 (68)
103 2csf_A DNA-binding protein SAT 94.0 0.16 5.5E-06 34.7 6.1 59 89-147 19-84 (101)
104 1x2l_A CUT-like 2, homeobox pr 93.8 0.1 3.4E-06 35.9 4.9 56 89-144 19-81 (101)
105 2jml_A DNA binding domain/tran 93.7 0.092 3.2E-06 33.8 4.5 65 31-114 8-74 (81)
106 3l1p_A POU domain, class 5, tr 93.7 0.21 7.3E-06 36.3 6.8 51 89-141 12-68 (155)
107 2k27_A Paired box protein PAX- 93.5 0.087 3E-06 37.7 4.4 38 88-126 26-63 (159)
108 3h5o_A Transcriptional regulat 93.4 0.014 4.8E-07 46.2 0.0 45 103-147 3-50 (339)
109 1wh6_A CUT-like 2, homeobox pr 93.3 0.37 1.3E-05 33.0 7.1 62 89-150 19-87 (101)
110 1u78_A TC3 transposase, transp 93.3 0.16 5.4E-06 35.0 5.3 37 89-126 8-44 (141)
111 3me5_A Cytosine-specific methy 93.3 0.13 4.3E-06 44.2 5.7 51 93-145 20-79 (482)
112 3frw_A Putative Trp repressor 93.1 0.16 5.5E-06 35.2 5.1 37 90-126 43-80 (107)
113 3kor_A Possible Trp repressor; 92.8 0.14 4.9E-06 36.1 4.5 38 90-127 60-98 (119)
114 2p7v_B Sigma-70, RNA polymeras 92.8 0.21 7E-06 30.7 4.8 25 102-126 23-47 (68)
115 1r71_A Transcriptional repress 92.7 0.21 7.2E-06 37.4 5.6 37 89-126 38-74 (178)
116 3jvd_A Transcriptional regulat 92.6 0.022 7.4E-07 45.3 0.0 45 103-147 5-52 (333)
117 1qgp_A Protein (double strande 92.6 0.13 4.5E-06 33.1 3.8 30 95-124 19-51 (77)
118 2o8x_A Probable RNA polymerase 92.6 0.22 7.5E-06 30.2 4.7 32 95-126 22-53 (70)
119 3fmy_A HTH-type transcriptiona 92.5 0.019 6.4E-07 36.2 -0.4 27 30-56 26-52 (73)
120 3bil_A Probable LACI-family tr 92.5 0.023 7.7E-07 45.4 0.0 43 105-147 9-54 (348)
121 3e3m_A Transcriptional regulat 92.5 0.023 7.8E-07 45.4 0.0 45 103-147 11-58 (355)
122 2w48_A Sorbitol operon regulat 92.3 0.21 7.3E-06 39.9 5.6 36 90-125 7-42 (315)
123 3omt_A Uncharacterized protein 92.3 0.026 8.8E-07 35.1 0.0 28 30-57 23-50 (73)
124 3hug_A RNA polymerase sigma fa 92.1 0.25 8.5E-06 32.2 4.8 33 94-126 43-75 (92)
125 2xi8_A Putative transcription 91.9 0.028 9.7E-07 33.7 -0.1 26 30-55 16-41 (66)
126 1y7y_A C.AHDI; helix-turn-heli 91.9 0.034 1.2E-06 34.2 0.2 26 30-55 28-53 (74)
127 3kz3_A Repressor protein CI; f 91.9 0.028 9.4E-07 35.7 -0.2 28 30-57 27-54 (80)
128 2dk5_A DNA-directed RNA polyme 91.8 0.17 5.8E-06 33.8 3.7 30 96-125 26-57 (91)
129 1ku3_A Sigma factor SIGA; heli 91.7 0.32 1.1E-05 30.2 4.8 24 103-126 29-52 (73)
130 1r69_A Repressor protein CI; g 91.6 0.075 2.6E-06 32.1 1.6 27 30-56 16-42 (69)
131 2r1j_L Repressor protein C2; p 91.6 0.031 1.1E-06 33.7 -0.2 26 30-55 20-45 (68)
132 2htj_A P fimbrial regulatory p 91.6 0.31 1.1E-05 31.0 4.8 29 97-125 7-35 (81)
133 3s8q_A R-M controller protein; 91.6 0.032 1.1E-06 35.4 -0.1 41 30-70 26-66 (82)
134 1oyi_A Double-stranded RNA-bin 91.5 0.27 9.3E-06 32.4 4.4 34 91-124 17-50 (82)
135 1vz0_A PARB, chromosome partit 91.5 0.26 8.9E-06 38.1 5.0 49 89-139 120-168 (230)
136 1hlv_A CENP-B, major centromer 91.4 0.27 9.3E-06 33.7 4.7 42 87-128 7-49 (131)
137 1qbj_A Protein (double-strande 91.2 0.31 1.1E-05 31.8 4.4 29 96-124 16-47 (81)
138 2ewt_A BLDD, putative DNA-bind 91.1 0.036 1.2E-06 33.9 -0.3 26 30-55 23-50 (71)
139 2ox6_A Hypothetical protein SO 91.0 1 3.4E-05 32.4 7.2 45 94-138 10-54 (166)
140 1adr_A P22 C2 repressor; trans 91.0 0.04 1.4E-06 34.0 -0.1 26 30-55 20-45 (76)
141 2jml_A DNA binding domain/tran 90.9 0.15 5.2E-06 32.8 2.7 24 103-126 4-27 (81)
142 2b5a_A C.BCLI; helix-turn-heli 90.9 0.04 1.4E-06 34.2 -0.1 26 30-55 25-50 (77)
143 1xn7_A Hypothetical protein YH 90.9 0.26 8.8E-06 32.0 3.8 33 92-124 4-36 (78)
144 1wiz_A DNA-binding protein SAT 90.8 0.39 1.3E-05 32.9 4.8 59 89-147 19-84 (101)
145 3bs3_A Putative DNA-binding pr 90.8 0.043 1.5E-06 33.9 -0.1 26 30-55 25-50 (76)
146 3f6w_A XRE-family like protein 90.7 0.037 1.3E-06 35.1 -0.5 26 30-55 29-54 (83)
147 1x3u_A Transcriptional regulat 90.6 0.94 3.2E-05 28.1 6.2 46 102-147 29-78 (79)
148 1tty_A Sigma-A, RNA polymerase 90.6 0.45 1.5E-05 30.7 4.8 24 103-126 37-60 (87)
149 1wh8_A CUT-like 2, homeobox pr 90.5 0.36 1.2E-05 33.6 4.5 57 89-145 29-92 (111)
150 1fse_A GERE; helix-turn-helix 90.5 0.73 2.5E-05 28.1 5.6 43 102-144 24-70 (74)
151 2jpc_A SSRB; DNA binding prote 90.4 0.27 9.3E-06 29.2 3.4 44 101-144 10-57 (61)
152 3eus_A DNA-binding protein; st 90.3 0.056 1.9E-06 34.9 0.1 39 30-68 29-67 (86)
153 2kpj_A SOS-response transcript 90.1 0.048 1.6E-06 35.7 -0.3 26 30-55 24-49 (94)
154 2ofy_A Putative XRE-family tra 90.1 0.052 1.8E-06 34.7 -0.1 26 30-55 29-55 (86)
155 2d1h_A ST1889, 109AA long hypo 90.1 0.54 1.8E-05 30.5 5.0 31 94-124 25-56 (109)
156 2k9q_A Uncharacterized protein 90.1 0.043 1.5E-06 34.5 -0.6 26 30-55 17-42 (77)
157 2w25_A Probable transcriptiona 90.0 0.6 2.1E-05 32.9 5.5 32 93-124 10-41 (150)
158 1zug_A Phage 434 CRO protein; 89.8 0.13 4.6E-06 31.1 1.6 26 30-55 18-43 (71)
159 3e7l_A Transcriptional regulat 89.8 0.51 1.7E-05 28.8 4.3 34 93-126 21-54 (63)
160 2rn7_A IS629 ORFA; helix, all 89.8 0.25 8.6E-06 33.0 3.2 23 104-126 30-52 (108)
161 2vz4_A Tipal, HTH-type transcr 89.8 0.27 9.2E-06 33.4 3.3 24 104-127 1-24 (108)
162 3ivp_A Putative transposon-rel 89.8 0.05 1.7E-06 37.5 -0.5 44 29-72 26-69 (126)
163 2o4a_A DNA-binding protein SAT 89.7 0.45 1.5E-05 32.1 4.2 60 89-148 9-75 (93)
164 1z4h_A TORI, TOR inhibition pr 89.6 0.14 4.8E-06 31.8 1.6 29 104-132 10-38 (66)
165 3qwg_A ESX-1 secretion-associa 89.6 0.064 2.2E-06 37.7 -0.0 81 30-119 26-113 (123)
166 1lmb_3 Protein (lambda repress 89.6 0.058 2E-06 34.8 -0.2 27 30-56 32-58 (92)
167 1je8_A Nitrate/nitrite respons 89.5 0.76 2.6E-05 29.4 5.2 43 102-144 34-80 (82)
168 2ef8_A C.ECOT38IS, putative tr 89.4 0.055 1.9E-06 34.1 -0.5 26 30-55 25-50 (84)
169 3g5g_A Regulatory protein; tra 89.3 0.066 2.3E-06 35.8 -0.1 42 29-70 42-83 (99)
170 3b7h_A Prophage LP1 protein 11 89.1 0.059 2E-06 33.5 -0.5 26 30-55 22-48 (78)
171 2heo_A Z-DNA binding protein 1 89.1 0.46 1.6E-05 29.5 3.8 23 103-125 24-46 (67)
172 3bd1_A CRO protein; transcript 89.0 0.082 2.8E-06 33.4 0.1 26 30-55 13-38 (79)
173 1yse_A DNA-binding protein SAT 88.8 0.3 1E-05 35.4 3.1 61 86-146 20-87 (141)
174 3cuo_A Uncharacterized HTH-typ 88.7 0.49 1.7E-05 30.4 3.9 29 96-124 30-58 (99)
175 2k27_A Paired box protein PAX- 88.7 2.4 8.1E-05 29.9 7.9 80 30-126 43-133 (159)
176 2l49_A C protein; P2 bacteriop 88.7 0.1 3.5E-06 34.0 0.5 37 30-66 19-55 (99)
177 3op9_A PLI0006 protein; struct 88.6 0.061 2.1E-06 36.3 -0.7 42 30-71 24-65 (114)
178 3ulq_B Transcriptional regulat 88.6 0.99 3.4E-05 29.6 5.4 35 90-126 32-66 (90)
179 3r0a_A Putative transcriptiona 88.5 0.56 1.9E-05 32.3 4.3 32 93-124 29-62 (123)
180 3c57_A Two component transcrip 88.5 0.62 2.1E-05 30.7 4.3 25 102-126 40-64 (95)
181 1b0n_A Protein (SINR protein); 88.4 0.4 1.4E-05 31.7 3.4 40 30-69 16-56 (111)
182 3lfp_A CSP231I C protein; tran 88.2 0.086 2.9E-06 34.7 -0.2 42 30-71 16-61 (98)
183 3vk0_A NHTF, transcriptional r 88.1 0.076 2.6E-06 36.1 -0.5 41 29-69 35-75 (114)
184 1umq_A Photosynthetic apparatu 88.1 0.72 2.5E-05 30.1 4.4 34 93-126 43-76 (81)
185 2k02_A Ferrous iron transport 88.1 0.32 1.1E-05 32.3 2.7 32 93-124 5-36 (87)
186 1s7o_A Hypothetical UPF0122 pr 88.1 0.67 2.3E-05 31.8 4.4 31 96-126 30-60 (113)
187 1sfx_A Conserved hypothetical 87.7 1 3.6E-05 29.0 5.0 32 94-125 24-55 (109)
188 3r1f_A ESX-1 secretion-associa 87.7 0.4 1.4E-05 34.0 3.1 43 30-72 28-76 (135)
189 2wiu_B HTH-type transcriptiona 87.6 0.055 1.9E-06 34.5 -1.4 40 30-69 27-66 (88)
190 1r8d_A Transcription activator 87.6 0.6 2.1E-05 31.6 3.9 23 105-127 3-25 (109)
191 3qq6_A HTH-type transcriptiona 87.6 0.083 2.8E-06 33.5 -0.5 26 30-55 25-51 (78)
192 1pdn_C Protein (PRD paired); p 87.6 0.53 1.8E-05 31.4 3.6 75 30-126 35-125 (128)
193 2pg4_A Uncharacterized protein 87.6 0.7 2.4E-05 30.0 4.1 30 95-124 20-51 (95)
194 2o3f_A Putative HTH-type trans 87.5 0.44 1.5E-05 32.6 3.2 33 103-135 38-70 (111)
195 3mky_B Protein SOPB; partition 87.5 0.94 3.2E-05 34.3 5.2 38 90-127 27-65 (189)
196 2cyy_A Putative HTH-type trans 87.5 1.2 4.2E-05 31.3 5.7 31 94-124 11-41 (151)
197 1xsv_A Hypothetical UPF0122 pr 87.5 0.86 2.9E-05 31.1 4.7 32 95-126 32-63 (113)
198 1k78_A Paired box protein PAX5 87.3 1.4 4.9E-05 30.7 5.9 77 30-128 50-142 (149)
199 3t76_A VANU, transcriptional r 87.0 0.1 3.5E-06 34.4 -0.3 25 29-53 38-62 (88)
200 2d5v_A Hepatocyte nuclear fact 87.0 1.2 4.2E-05 32.2 5.6 40 89-128 6-46 (164)
201 3nrv_A Putative transcriptiona 86.9 1.3 4.6E-05 30.3 5.5 34 91-124 41-74 (148)
202 3f52_A CLP gene regulator (CLG 86.9 0.1 3.6E-06 35.3 -0.4 40 30-69 43-82 (117)
203 1x57_A Endothelial differentia 86.8 0.083 2.8E-06 34.2 -0.9 28 30-57 28-55 (91)
204 3bpv_A Transcriptional regulat 86.6 1.4 4.9E-05 29.6 5.4 33 92-124 31-63 (138)
205 3mlf_A Transcriptional regulat 86.5 0.095 3.2E-06 35.7 -0.7 42 29-70 37-78 (111)
206 4ghj_A Probable transcriptiona 86.5 0.32 1.1E-05 32.8 2.0 30 26-55 47-76 (101)
207 2cfx_A HTH-type transcriptiona 86.5 1.5 5E-05 30.7 5.6 31 94-124 9-39 (144)
208 3o9x_A Uncharacterized HTH-typ 86.4 0.34 1.2E-05 33.5 2.1 26 30-55 86-111 (133)
209 2dbb_A Putative HTH-type trans 86.4 1.4 4.7E-05 31.0 5.4 31 94-124 13-43 (151)
210 3ech_A MEXR, multidrug resista 86.3 0.99 3.4E-05 30.9 4.5 35 90-124 37-71 (142)
211 2zcw_A TTHA1359, transcription 86.1 1.3 4.5E-05 31.9 5.3 22 104-125 146-167 (202)
212 2cg4_A Regulatory protein ASNC 85.8 1.7 5.7E-05 30.6 5.6 31 94-124 12-42 (152)
213 1ntc_A Protein (nitrogen regul 85.8 0.67 2.3E-05 30.4 3.2 33 93-125 53-85 (91)
214 3mzy_A RNA polymerase sigma-H 85.7 1.4 4.8E-05 30.3 5.1 35 90-126 112-146 (164)
215 3lsg_A Two-component response 85.4 1.7 5.7E-05 28.4 5.1 36 93-128 8-43 (103)
216 3iwf_A Transcription regulator 85.4 0.68 2.3E-05 31.6 3.2 33 100-132 31-63 (107)
217 2pn6_A ST1022, 150AA long hypo 85.4 1.5 5.1E-05 30.7 5.2 30 95-124 8-37 (150)
218 2fbh_A Transcriptional regulat 85.4 1.3 4.4E-05 30.1 4.7 31 94-124 41-72 (146)
219 2p5k_A Arginine repressor; DNA 85.4 1.4 4.6E-05 26.2 4.3 28 99-126 14-46 (64)
220 1ub9_A Hypothetical protein PH 85.4 0.72 2.5E-05 29.6 3.2 29 96-124 22-50 (100)
221 2p5v_A Transcriptional regulat 85.4 1.8 6.3E-05 30.7 5.7 31 94-124 14-44 (162)
222 1sfu_A 34L protein; protein/Z- 85.3 0.49 1.7E-05 30.7 2.3 35 90-124 15-49 (75)
223 3bdd_A Regulatory protein MARR 85.3 1.6 5.3E-05 29.5 5.1 32 93-124 34-65 (142)
224 2hr3_A Probable transcriptiona 85.2 1.6 5.6E-05 29.7 5.2 32 93-124 38-70 (147)
225 3b02_A Transcriptional regulat 85.2 1.4 4.9E-05 31.6 5.1 22 104-125 139-160 (195)
226 3bro_A Transcriptional regulat 85.2 1.8 6.3E-05 29.2 5.5 34 91-124 35-70 (141)
227 2ppx_A AGR_C_3184P, uncharacte 85.1 0.56 1.9E-05 30.8 2.6 26 30-55 45-70 (99)
228 2e1c_A Putative HTH-type trans 85.1 1.6 5.4E-05 31.8 5.3 32 93-124 30-61 (171)
229 4hbl_A Transcriptional regulat 85.1 1.4 4.9E-05 30.4 4.9 35 90-124 41-75 (149)
230 1ku9_A Hypothetical protein MJ 85.0 1.4 4.6E-05 30.0 4.7 35 90-124 26-61 (152)
231 3oop_A LIN2960 protein; protei 85.0 1.5 5.2E-05 29.9 5.0 33 92-124 39-71 (143)
232 3eco_A MEPR; mutlidrug efflux 84.9 1.5 5.3E-05 29.6 4.9 34 91-124 32-67 (139)
233 3s2w_A Transcriptional regulat 84.9 1.1 3.8E-05 31.3 4.3 31 94-124 54-84 (159)
234 3g3z_A NMB1585, transcriptiona 84.9 1.6 5.5E-05 29.8 5.1 35 90-124 31-65 (145)
235 1on2_A Transcriptional regulat 84.8 1.5 5.3E-05 30.1 5.0 25 100-124 18-42 (142)
236 2wte_A CSA3; antiviral protein 84.7 1.4 4.7E-05 34.3 5.1 35 90-124 152-186 (244)
237 3t72_q RNA polymerase sigma fa 84.6 1.4 4.8E-05 29.6 4.5 24 103-126 38-61 (99)
238 3fym_A Putative uncharacterize 84.6 0.34 1.2E-05 33.9 1.4 45 28-72 16-66 (130)
239 2ict_A Antitoxin HIGA; helix-t 84.6 0.58 2E-05 30.1 2.5 26 30-55 23-48 (94)
240 1q06_A Transcriptional regulat 84.5 1.1 3.6E-05 31.7 4.0 24 105-128 1-24 (135)
241 3iwz_A CAP-like, catabolite ac 84.5 1.7 5.8E-05 31.7 5.3 22 105-126 188-209 (230)
242 2nnn_A Probable transcriptiona 84.4 1.7 6E-05 29.2 5.0 32 93-124 41-72 (140)
243 1u2w_A CADC repressor, cadmium 84.3 1.2 4.3E-05 30.4 4.2 29 96-124 48-76 (122)
244 3hh0_A Transcriptional regulat 84.2 1.2 4E-05 31.9 4.2 26 103-128 3-28 (146)
245 2jt1_A PEFI protein; solution 84.1 2 6.7E-05 27.6 4.8 35 90-124 7-44 (77)
246 2vz4_A Tipal, HTH-type transcr 84.1 2 6.8E-05 28.9 5.1 65 32-117 5-71 (108)
247 1rp3_A RNA polymerase sigma fa 84.1 1.3 4.6E-05 32.5 4.7 32 95-126 194-225 (239)
248 2fa5_A Transcriptional regulat 84.1 2.2 7.4E-05 29.7 5.5 32 93-124 52-83 (162)
249 2qvo_A Uncharacterized protein 84.1 0.97 3.3E-05 29.4 3.4 20 105-124 31-50 (95)
250 1i1g_A Transcriptional regulat 84.0 1.5 5E-05 30.3 4.5 29 96-124 10-38 (141)
251 2x4h_A Hypothetical protein SS 84.0 1.5 5.2E-05 30.0 4.6 24 101-124 28-51 (139)
252 3hh0_A Transcriptional regulat 83.8 1.6 5.6E-05 31.2 4.8 21 31-51 7-27 (146)
253 1lj9_A Transcriptional regulat 83.6 1.3 4.5E-05 30.1 4.1 31 94-124 33-63 (144)
254 2oz6_A Virulence factor regula 83.5 0.82 2.8E-05 32.9 3.1 23 104-126 164-186 (207)
255 2ia0_A Putative HTH-type trans 83.4 2.2 7.6E-05 31.0 5.5 31 94-124 21-51 (171)
256 2rdp_A Putative transcriptiona 83.4 2.3 8E-05 29.0 5.4 32 93-124 45-76 (150)
257 2qww_A Transcriptional regulat 83.3 1.8 6.2E-05 29.8 4.8 32 93-124 44-75 (154)
258 2pex_A Transcriptional regulat 83.3 2.3 7.7E-05 29.3 5.3 34 91-124 48-81 (153)
259 1r8d_A Transcription activator 83.3 2.1 7.1E-05 28.8 4.9 19 32-50 6-24 (109)
260 3gp4_A Transcriptional regulat 83.2 0.88 3E-05 32.5 3.1 23 104-126 2-24 (142)
261 2a61_A Transcriptional regulat 83.0 2.2 7.6E-05 28.9 5.1 32 93-124 36-67 (145)
262 3bj6_A Transcriptional regulat 83.0 2 6.9E-05 29.4 4.9 33 92-124 42-74 (152)
263 3ryp_A Catabolite gene activat 82.9 0.91 3.1E-05 32.7 3.2 23 104-126 167-189 (210)
264 1r1u_A CZRA, repressor protein 82.9 1.7 5.8E-05 28.8 4.3 23 102-124 37-59 (106)
265 2gxg_A 146AA long hypothetical 82.9 2.3 7.8E-05 28.9 5.1 31 93-124 40-70 (146)
266 1or7_A Sigma-24, RNA polymeras 82.8 1.7 5.7E-05 31.1 4.6 32 95-126 147-178 (194)
267 3tgn_A ADC operon repressor AD 82.8 2.7 9.2E-05 28.6 5.5 31 93-124 41-71 (146)
268 2rnj_A Response regulator prot 82.7 0.74 2.5E-05 29.8 2.4 43 102-144 42-88 (91)
269 1j5y_A Transcriptional regulat 82.7 2.1 7.2E-05 31.4 5.2 31 94-124 25-56 (187)
270 1y0u_A Arsenical resistance op 82.7 1.7 5.8E-05 28.2 4.2 23 102-124 41-63 (96)
271 2fbi_A Probable transcriptiona 82.7 1.7 5.9E-05 29.3 4.4 32 93-124 39-70 (142)
272 2jvl_A TRMBF1; coactivator, he 82.6 0.25 8.6E-06 33.2 0.0 28 29-56 50-77 (107)
273 1ft9_A Carbon monoxide oxidati 82.6 1.5 5.1E-05 32.1 4.3 21 104-124 163-183 (222)
274 2lkp_A Transcriptional regulat 82.5 2 6.8E-05 28.8 4.6 28 96-124 38-65 (119)
275 1eto_A FIS, factor for inversi 82.5 1.8 6.2E-05 29.0 4.3 34 93-126 60-93 (98)
276 3dv8_A Transcriptional regulat 82.4 1.8 6.1E-05 31.4 4.6 22 104-125 169-190 (220)
277 1z6r_A MLC protein; transcript 82.4 1.8 6.2E-05 35.3 5.2 32 93-124 19-50 (406)
278 3k0l_A Repressor protein; heli 82.4 1.6 5.3E-05 30.7 4.2 35 90-124 46-80 (162)
279 3cdh_A Transcriptional regulat 82.4 2.2 7.4E-05 29.5 4.9 33 92-124 45-77 (155)
280 3kxa_A NGO0477 protein, putati 82.3 0.21 7.1E-06 35.6 -0.6 28 30-57 83-110 (141)
281 3i4p_A Transcriptional regulat 82.3 2.2 7.6E-05 30.5 5.1 31 94-124 7-37 (162)
282 2k9s_A Arabinose operon regula 82.2 3.3 0.00011 27.2 5.6 26 103-128 19-44 (107)
283 2zkz_A Transcriptional repress 82.2 1.4 4.8E-05 29.0 3.6 28 98-125 35-62 (99)
284 3hsr_A HTH-type transcriptiona 82.1 1.1 3.8E-05 30.7 3.3 32 93-124 39-70 (140)
285 3cec_A Putative antidote prote 82.1 0.22 7.4E-06 33.0 -0.5 26 30-55 33-58 (104)
286 1jgs_A Multiple antibiotic res 82.1 2.9 9.9E-05 28.1 5.4 32 93-124 37-68 (138)
287 3kp7_A Transcriptional regulat 82.0 1.3 4.4E-05 30.6 3.6 31 93-124 41-71 (151)
288 1p4w_A RCSB; solution structur 82.0 2.6 9.1E-05 28.0 5.0 43 103-145 48-94 (99)
289 2a6c_A Helix-turn-helix motif; 82.0 0.19 6.6E-06 32.0 -0.8 24 30-53 33-56 (83)
290 3cjn_A Transcriptional regulat 82.0 2.2 7.6E-05 29.7 4.9 32 93-124 55-86 (162)
291 1y9q_A Transcriptional regulat 81.9 0.25 8.4E-06 36.2 -0.3 43 29-71 25-67 (192)
292 2p5t_A Putative transcriptiona 81.9 0.28 9.5E-06 35.2 0.0 47 26-72 12-58 (158)
293 3oou_A LIN2118 protein; protei 81.7 3.4 0.00011 27.2 5.5 26 103-128 20-45 (108)
294 2eby_A Putative HTH-type trans 81.7 0.23 7.9E-06 33.3 -0.5 27 30-56 26-52 (113)
295 1g2h_A Transcriptional regulat 81.6 2.9 0.0001 25.2 4.7 32 94-126 24-55 (61)
296 2eth_A Transcriptional regulat 81.6 2.4 8.2E-05 29.4 4.9 31 94-124 48-78 (154)
297 2bnm_A Epoxidase; oxidoreducta 81.6 0.3 1E-05 35.8 0.1 42 29-70 24-66 (198)
298 2dg6_A Putative transcriptiona 81.5 2.6 8.9E-05 32.4 5.4 64 32-114 4-68 (222)
299 2oqg_A Possible transcriptiona 81.3 1.8 6.1E-05 28.5 4.0 24 101-124 31-54 (114)
300 2fmy_A COOA, carbon monoxide o 81.3 1.1 3.8E-05 32.7 3.1 22 103-124 166-187 (220)
301 1b4a_A Arginine repressor; hel 81.2 2.2 7.5E-05 30.9 4.6 33 94-126 8-46 (149)
302 3e97_A Transcriptional regulat 81.2 1.1 3.9E-05 32.8 3.2 23 103-125 174-196 (231)
303 3d0s_A Transcriptional regulat 80.9 1.1 3.9E-05 32.7 3.1 22 103-124 176-197 (227)
304 3k2z_A LEXA repressor; winged 80.8 1.9 6.6E-05 31.8 4.4 35 90-124 8-44 (196)
305 4ev0_A Transcription regulator 80.8 1.2 4E-05 32.2 3.1 41 103-143 162-215 (216)
306 3la7_A Global nitrogen regulat 80.8 3.2 0.00011 30.9 5.7 24 103-126 192-215 (243)
307 1z05_A Transcriptional regulat 80.8 2.1 7.1E-05 35.4 5.0 33 92-124 41-73 (429)
308 1gdt_A GD resolvase, protein ( 80.8 2.6 9.1E-05 30.6 5.1 32 95-127 150-181 (183)
309 2nyx_A Probable transcriptiona 80.7 2.4 8.2E-05 30.0 4.7 32 93-124 48-79 (168)
310 3jth_A Transcription activator 80.6 1.4 4.7E-05 28.6 3.1 22 103-124 35-56 (98)
311 2r0q_C Putative transposon TN5 80.6 3.4 0.00012 30.7 5.8 36 94-130 166-201 (209)
312 2kko_A Possible transcriptiona 80.6 2 6.7E-05 28.7 4.0 23 102-124 36-58 (108)
313 2hoe_A N-acetylglucosamine kin 80.6 1.5 5.1E-05 35.6 4.0 28 96-124 26-53 (380)
314 3trb_A Virulence-associated pr 80.6 0.27 9.1E-06 33.3 -0.5 27 30-56 29-55 (104)
315 1tbx_A ORF F-93, hypothetical 80.5 1.5 5.3E-05 28.3 3.4 31 94-124 12-46 (99)
316 3e6c_C CPRK, cyclic nucleotide 80.5 2.6 8.8E-05 31.4 5.1 23 103-125 176-198 (250)
317 2frh_A SARA, staphylococcal ac 80.3 1.5 5.2E-05 29.8 3.4 32 93-124 40-73 (127)
318 2h09_A Transcriptional regulat 80.3 2.9 0.0001 29.2 5.0 35 90-124 39-74 (155)
319 2l8n_A Transcriptional repress 80.2 1.7 5.7E-05 27.1 3.3 23 30-52 11-33 (67)
320 1s3j_A YUSO protein; structura 80.2 2 6.7E-05 29.6 4.0 32 93-124 40-71 (155)
321 3mn2_A Probable ARAC family tr 80.0 4.9 0.00017 26.3 5.8 26 103-128 17-42 (108)
322 1zyb_A Transcription regulator 79.9 1.3 4.4E-05 32.8 3.1 23 104-126 186-208 (232)
323 1u8b_A ADA polyprotein; protei 79.9 5.1 0.00017 27.4 6.1 40 96-135 84-124 (133)
324 3gpv_A Transcriptional regulat 79.8 1.9 6.4E-05 30.9 3.9 25 104-128 16-40 (148)
325 3fx3_A Cyclic nucleotide-bindi 79.7 2.4 8.3E-05 31.1 4.6 24 103-126 177-200 (237)
326 3oio_A Transcriptional regulat 79.7 6.9 0.00024 25.8 6.6 41 92-132 9-51 (113)
327 3e6m_A MARR family transcripti 79.7 1.9 6.5E-05 30.2 3.9 32 93-124 56-87 (161)
328 2zhg_A Redox-sensitive transcr 79.6 1.9 6.5E-05 31.1 3.9 25 103-127 10-34 (154)
329 3dkw_A DNR protein; CRP-FNR, H 79.2 1.1 3.7E-05 32.7 2.5 24 103-126 177-200 (227)
330 1neq_A DNA-binding protein NER 79.2 0.51 1.7E-05 30.0 0.6 43 5-51 3-45 (74)
331 4fx0_A Probable transcriptiona 79.1 3.6 0.00012 28.8 5.2 21 104-124 52-72 (148)
332 2gau_A Transcriptional regulat 78.9 1.4 4.7E-05 32.4 3.0 23 103-125 179-201 (232)
333 4aik_A Transcriptional regulat 78.9 3.8 0.00013 28.7 5.3 30 95-124 36-66 (151)
334 3deu_A Transcriptional regulat 78.8 3.8 0.00013 29.0 5.3 36 89-124 52-88 (166)
335 3kkc_A TETR family transcripti 78.5 2.4 8.3E-05 29.2 4.1 53 90-142 15-70 (177)
336 3fm5_A Transcriptional regulat 78.4 3.5 0.00012 28.3 4.8 32 93-124 42-74 (150)
337 2ek5_A Predicted transcription 78.1 4.2 0.00014 28.2 5.2 35 90-124 7-48 (129)
338 2jrt_A Uncharacterized protein 78.0 4.9 0.00017 26.8 5.3 38 89-126 34-71 (95)
339 3kcc_A Catabolite gene activat 77.6 1.7 5.7E-05 33.0 3.2 23 104-126 217-239 (260)
340 2obp_A Putative DNA-binding pr 77.4 4.6 0.00016 27.1 5.0 36 89-124 15-56 (96)
341 3mkl_A HTH-type transcriptiona 77.3 5.9 0.0002 26.5 5.7 26 103-128 22-47 (120)
342 1z91_A Organic hydroperoxide r 77.3 2.4 8.3E-05 28.8 3.7 32 93-124 43-74 (147)
343 3f3x_A Transcriptional regulat 77.0 3.6 0.00012 27.9 4.6 31 93-124 40-70 (144)
344 1q1h_A TFE, transcription fact 76.5 2.5 8.5E-05 27.9 3.5 21 104-124 33-53 (110)
345 3g7d_A PHPD; non heme Fe(II) d 76.5 2.8 9.6E-05 34.8 4.3 54 95-148 7-61 (443)
346 3jw4_A Transcriptional regulat 76.4 1.7 5.8E-05 29.9 2.7 32 93-124 44-77 (148)
347 3nqo_A MARR-family transcripti 76.3 3.8 0.00013 29.7 4.8 36 89-124 40-77 (189)
348 3bja_A Transcriptional regulat 76.3 1.8 6E-05 29.1 2.7 32 93-124 36-67 (139)
349 3gp4_A Transcriptional regulat 76.1 7 0.00024 27.6 6.0 64 32-115 6-70 (142)
350 2v57_A TETR family transcripti 75.7 2.4 8.3E-05 29.5 3.5 33 97-129 25-57 (190)
351 3hot_A Transposable element ma 75.7 17 0.00058 28.3 8.8 27 100-126 82-108 (345)
352 3tqn_A Transcriptional regulat 75.3 5.8 0.0002 26.6 5.2 19 106-124 35-53 (113)
353 2f07_A YVDT; helix-turn-helix, 75.3 5.6 0.00019 28.2 5.4 35 100-134 26-60 (197)
354 4b8x_A SCO5413, possible MARR- 75.0 4.4 0.00015 28.1 4.7 22 103-124 50-71 (147)
355 2o38_A Hypothetical protein; a 74.9 0.4 1.4E-05 33.2 -0.9 40 30-69 55-95 (120)
356 1uly_A Hypothetical protein PH 74.8 3.5 0.00012 30.6 4.3 29 95-124 25-53 (192)
357 1q06_A Transcriptional regulat 74.7 7.5 0.00026 27.1 5.8 20 32-51 4-23 (135)
358 2d6y_A Putative TETR family re 74.7 3.3 0.00011 29.7 4.0 32 100-131 24-55 (202)
359 2fxa_A Protease production reg 74.7 3.6 0.00012 30.6 4.3 32 93-124 51-82 (207)
360 2lfw_A PHYR sigma-like domain; 74.6 2 6.8E-05 30.3 2.7 31 95-125 100-130 (157)
361 3bqz_B HTH-type transcriptiona 74.6 2.9 9.8E-05 29.1 3.6 30 100-129 18-47 (194)
362 2wus_R RODZ, putative uncharac 74.6 0.45 1.5E-05 32.6 -0.7 28 28-55 20-47 (112)
363 2qtq_A Transcriptional regulat 74.4 3.6 0.00012 29.0 4.1 31 100-130 32-62 (213)
364 3vpr_A Transcriptional regulat 74.2 4.3 0.00015 28.4 4.5 31 99-129 18-48 (190)
365 2bv6_A MGRA, HTH-type transcri 74.2 2.2 7.5E-05 29.0 2.8 32 93-124 40-71 (142)
366 1r1t_A Transcriptional repress 74.0 4.9 0.00017 27.4 4.6 23 102-124 57-79 (122)
367 3dn7_A Cyclic nucleotide bindi 73.9 0.66 2.3E-05 33.2 0.0 24 103-126 167-190 (194)
368 1r8e_A Multidrug-efflux transp 73.9 11 0.00039 28.6 7.2 67 31-117 8-76 (278)
369 3qkx_A Uncharacterized HTH-typ 73.8 2.5 8.5E-05 29.2 3.1 27 103-129 27-53 (188)
370 3b73_A PHIH1 repressor-like pr 73.5 3.2 0.00011 28.5 3.5 32 93-124 16-49 (111)
371 3qao_A LMO0526 protein, MERR-l 73.4 4.8 0.00016 31.2 4.9 20 31-50 6-25 (249)
372 1v4r_A Transcriptional repress 73.2 4.5 0.00015 26.5 4.1 36 90-125 14-56 (102)
373 3dcf_A Transcriptional regulat 73.2 3.4 0.00012 29.3 3.7 27 103-129 50-76 (218)
374 3neu_A LIN1836 protein; struct 72.8 8 0.00027 26.4 5.5 36 89-124 15-57 (125)
375 2o0m_A Transcriptional regulat 72.8 0.73 2.5E-05 37.3 0.0 33 93-125 23-55 (345)
376 2hzt_A Putative HTH-type trans 72.7 4.1 0.00014 27.0 3.8 28 96-124 20-48 (107)
377 2fq4_A Transcriptional regulat 72.7 6.3 0.00021 27.7 5.1 28 100-127 28-55 (192)
378 2rae_A Transcriptional regulat 72.5 4.4 0.00015 28.6 4.2 32 100-131 33-64 (207)
379 3lwj_A Putative TETR-family tr 72.5 3.6 0.00012 28.9 3.7 29 101-129 29-57 (202)
380 3ppb_A Putative TETR family tr 72.4 2.9 0.0001 28.9 3.2 27 103-129 28-54 (195)
381 3knw_A Putative transcriptiona 72.3 3.2 0.00011 29.3 3.4 30 100-129 30-59 (212)
382 3lhq_A Acrab operon repressor 72.2 3.2 0.00011 29.3 3.4 29 101-129 31-59 (220)
383 4dyq_A Gene 1 protein; GP1, oc 72.0 3.5 0.00012 29.1 3.5 37 90-127 15-52 (140)
384 3pqk_A Biofilm growth-associat 72.0 3.6 0.00012 26.7 3.3 23 102-124 34-56 (102)
385 1iuf_A Centromere ABP1 protein 71.9 1.3 4.4E-05 31.4 1.2 26 101-126 27-58 (144)
386 2oa4_A SIR5; structure, struct 71.8 3.9 0.00013 27.8 3.5 28 99-126 45-72 (101)
387 1rr7_A Middle operon regulator 71.8 7.3 0.00025 27.3 5.1 27 100-126 88-114 (129)
388 2jsc_A Transcriptional regulat 71.7 3.2 0.00011 28.1 3.1 23 102-124 32-54 (118)
389 1okr_A MECI, methicillin resis 71.7 4.6 0.00016 26.8 4.0 30 95-124 15-48 (123)
390 3boq_A Transcriptional regulat 71.5 2.1 7.1E-05 29.7 2.2 32 93-124 50-82 (160)
391 2yve_A Transcriptional regulat 71.4 4.6 0.00016 28.4 4.1 27 103-129 23-49 (185)
392 1z7u_A Hypothetical protein EF 71.3 5.2 0.00018 26.6 4.1 22 103-124 34-56 (112)
393 1ojl_A Transcriptional regulat 71.3 4.8 0.00017 31.6 4.5 33 93-125 270-302 (304)
394 2cob_A LCOR protein; MLR2, KIA 71.3 8.3 0.00028 24.5 4.7 39 89-128 16-54 (70)
395 3dew_A Transcriptional regulat 71.3 4.9 0.00017 27.9 4.2 27 103-129 27-53 (206)
396 2eh3_A Transcriptional regulat 71.2 7.3 0.00025 26.9 5.1 34 96-129 14-47 (179)
397 3on4_A Transcriptional regulat 71.1 2.8 9.6E-05 29.0 2.8 29 101-129 27-55 (191)
398 3egq_A TETR family transcripti 70.9 4.9 0.00017 27.5 4.0 39 91-129 8-49 (170)
399 3qbm_A TETR transcriptional re 70.9 2.3 7.9E-05 29.7 2.3 30 100-129 23-52 (199)
400 3vp5_A Transcriptional regulat 70.7 3.9 0.00013 29.0 3.6 38 91-128 16-56 (189)
401 3anp_C Transcriptional repress 70.7 4.7 0.00016 28.6 4.0 31 100-130 25-55 (204)
402 3f1b_A TETR-like transcription 70.7 3.4 0.00012 28.9 3.2 28 102-129 32-59 (203)
403 1bl0_A Protein (multiple antib 70.5 6.8 0.00023 26.6 4.7 26 103-128 26-51 (129)
404 3by6_A Predicted transcription 70.4 6 0.00021 27.2 4.4 35 90-124 14-55 (126)
405 3hrs_A Metalloregulator SCAR; 70.2 4.6 0.00016 30.3 4.0 35 90-124 5-40 (214)
406 2dg7_A Putative transcriptiona 70.2 7.7 0.00026 27.1 5.1 27 103-129 26-52 (195)
407 1xmk_A Double-stranded RNA-spe 70.2 4.1 0.00014 26.3 3.2 31 94-124 15-46 (79)
408 2zcm_A Biofilm operon icaabcd 70.1 4.7 0.00016 28.2 3.9 30 100-129 23-52 (192)
409 2hku_A A putative transcriptio 70.0 4.5 0.00015 28.9 3.8 36 93-129 29-64 (215)
410 1p6r_A Penicillinase repressor 70.0 7.1 0.00024 24.2 4.4 33 93-125 12-48 (82)
411 3dpj_A Transcription regulator 69.9 3.9 0.00013 28.6 3.4 30 100-129 24-53 (194)
412 1uxc_A FRUR (1-57), fructose r 69.9 2.4 8.2E-05 26.2 2.0 23 31-53 3-25 (65)
413 2bgc_A PRFA; bacterial infecti 69.8 2.4 8.2E-05 31.4 2.3 39 104-142 169-221 (238)
414 3bdn_A Lambda repressor; repre 69.7 1.8 6E-05 32.4 1.5 41 30-70 32-72 (236)
415 3bni_A Putative TETR-family tr 69.7 4.3 0.00015 29.6 3.7 30 100-129 59-88 (229)
416 2f2e_A PA1607; transcription f 69.5 6.3 0.00022 27.7 4.4 23 102-124 35-57 (146)
417 1mkm_A ICLR transcriptional re 69.4 6.3 0.00022 30.0 4.7 29 96-124 14-43 (249)
418 1pb6_A Hypothetical transcript 69.3 4.4 0.00015 28.5 3.6 29 101-129 35-63 (212)
419 3cwr_A Transcriptional regulat 69.3 5.7 0.0002 27.7 4.2 30 100-129 33-62 (208)
420 3cjd_A Transcriptional regulat 68.9 3.2 0.00011 29.7 2.8 30 100-129 28-57 (198)
421 4aci_A HTH-type transcriptiona 68.6 2.1 7.3E-05 29.9 1.7 27 103-129 33-59 (191)
422 4a0z_A Transcription factor FA 68.6 5.7 0.00019 29.6 4.2 39 94-132 16-54 (190)
423 1r8e_A Multidrug-efflux transp 68.6 2.7 9.2E-05 32.3 2.4 25 103-127 4-28 (278)
424 2g7s_A Transcriptional regulat 68.6 3.5 0.00012 28.5 2.8 27 103-129 27-53 (194)
425 3kz9_A SMCR; transcriptional r 68.5 3.6 0.00012 28.7 3.0 28 102-129 35-62 (206)
426 3gpv_A Transcriptional regulat 68.4 13 0.00043 26.4 5.8 22 30-51 18-39 (148)
427 3ljl_A Transcriptional regulat 68.3 3 0.0001 28.7 2.5 27 103-129 33-59 (156)
428 3gzi_A Transcriptional regulat 68.3 2.5 8.4E-05 30.2 2.0 38 92-129 22-62 (218)
429 3pxp_A Helix-turn-helix domain 68.0 1.2 4.1E-05 35.7 0.3 49 28-76 25-74 (292)
430 2kfs_A Conserved hypothetical 68.0 4.3 0.00015 29.5 3.2 28 104-131 31-58 (148)
431 3f6o_A Probable transcriptiona 67.9 4 0.00014 27.5 3.0 23 102-124 29-51 (118)
432 1l9z_H Sigma factor SIGA; heli 67.9 5.6 0.00019 33.6 4.4 24 103-126 394-417 (438)
433 2nx4_A Transcriptional regulat 67.9 4.4 0.00015 28.6 3.4 31 99-129 25-55 (194)
434 3uj3_X DNA-invertase; helix-tu 67.9 1.1 3.7E-05 33.0 0.0 34 95-129 150-183 (193)
435 1o5l_A Transcriptional regulat 67.6 1.1 3.8E-05 32.7 0.0 24 103-126 163-186 (213)
436 3nnr_A Transcriptional regulat 67.5 4.2 0.00014 29.4 3.2 29 101-129 22-50 (228)
437 2jj7_A Hemolysin II regulatory 67.4 2.9 9.9E-05 29.1 2.2 27 103-129 26-52 (186)
438 3bhq_A Transcriptional regulat 67.2 6.7 0.00023 27.9 4.3 30 100-129 28-57 (211)
439 2fu4_A Ferric uptake regulatio 67.1 19 0.00065 22.2 6.0 31 95-125 22-59 (83)
440 2ibd_A Possible transcriptiona 67.0 5.2 0.00018 28.4 3.6 31 99-129 29-59 (204)
441 3q0w_A HTH-type transcriptiona 67.0 5.2 0.00018 29.2 3.7 26 104-129 64-89 (236)
442 3vib_A MTRR; helix-turn-helix 66.7 4.7 0.00016 28.7 3.3 31 99-129 25-55 (210)
443 3u2r_A Regulatory protein MARR 66.7 4.2 0.00014 28.6 3.0 32 93-124 49-82 (168)
444 3bru_A Regulatory protein, TET 66.6 4.1 0.00014 29.0 3.0 27 103-129 49-75 (222)
445 2qib_A TETR-family transcripti 66.6 5.2 0.00018 29.2 3.6 38 92-129 18-58 (231)
446 2i10_A Putative TETR transcrip 66.6 9.3 0.00032 27.1 4.9 36 93-128 20-55 (202)
447 2xrn_A HTH-type transcriptiona 66.6 5.9 0.0002 30.1 4.0 30 96-125 12-42 (241)
448 3rh2_A Hypothetical TETR-like 66.6 3.9 0.00013 29.2 2.8 30 100-129 19-48 (212)
449 1l0o_C Sigma factor; bergerat 66.6 1.2 4.1E-05 32.8 0.0 30 97-126 207-236 (243)
450 3f0c_A TETR-molecule A, transc 66.6 4.9 0.00017 28.5 3.4 29 101-129 28-56 (216)
451 2fjr_A Repressor protein CI; g 66.6 0.95 3.2E-05 32.8 -0.6 26 30-55 22-47 (189)
452 3o60_A LIN0861 protein; PSI, M 66.4 3.8 0.00013 29.4 2.7 40 90-129 22-65 (185)
453 3clo_A Transcriptional regulat 66.2 6.7 0.00023 29.9 4.3 56 87-144 197-256 (258)
454 1hw1_A FADR, fatty acid metabo 66.1 11 0.00038 28.0 5.4 36 89-124 9-51 (239)
455 3m8j_A FOCB protein; all-alpha 66.1 7 0.00024 27.0 3.9 52 70-126 31-82 (111)
456 3pas_A TETR family transcripti 66.1 2 6.9E-05 29.8 1.1 27 103-129 27-53 (195)
457 3mnl_A KSTR, transcriptional r 66.1 2.1 7E-05 30.1 1.2 28 103-130 39-66 (203)
458 3g7r_A Putative transcriptiona 66.0 5.8 0.0002 28.6 3.7 31 99-129 50-80 (221)
459 1fx7_A Iron-dependent represso 65.9 6.6 0.00023 29.5 4.1 34 90-124 9-44 (230)
460 2zhg_A Redox-sensitive transcr 65.6 11 0.00039 26.8 5.2 21 30-50 13-33 (154)
461 3frq_A Repressor protein MPHR( 65.5 3.5 0.00012 28.9 2.4 28 102-129 26-53 (195)
462 3loc_A HTH-type transcriptiona 65.5 2.1 7.3E-05 30.2 1.2 29 100-128 34-62 (212)
463 1u3e_M HNH homing endonuclease 65.5 5.3 0.00018 29.0 3.4 26 105-130 136-161 (174)
464 3c2b_A Transcriptional regulat 65.4 7.6 0.00026 27.6 4.2 28 102-129 33-60 (221)
465 2dg8_A Putative TETR-family tr 65.3 3.4 0.00012 29.1 2.2 27 103-129 28-54 (193)
466 2wui_A MEXZ, transcriptional r 65.1 9.2 0.00031 27.2 4.7 27 102-128 29-55 (210)
467 2zb9_A Putative transcriptiona 65.1 4.3 0.00015 28.9 2.8 28 102-129 41-68 (214)
468 3e7q_A Transcriptional regulat 65.0 2.2 7.5E-05 30.1 1.2 28 102-129 32-59 (215)
469 3cta_A Riboflavin kinase; stru 64.9 8.1 0.00028 29.0 4.5 22 103-124 26-47 (230)
470 2fsw_A PG_0823 protein; alpha- 64.8 6.1 0.00021 26.0 3.4 23 102-124 36-59 (107)
471 3b81_A Transcriptional regulat 64.7 3.7 0.00013 28.8 2.3 28 101-128 28-55 (203)
472 3mvp_A TETR/ACRR transcription 64.3 4.4 0.00015 28.6 2.8 29 101-129 43-71 (217)
473 2rek_A Putative TETR-family tr 64.1 6.1 0.00021 27.8 3.5 29 100-129 32-60 (199)
474 2hyt_A TETR-family transcripti 64.1 5.4 0.00019 28.2 3.2 30 100-129 28-57 (197)
475 3s5r_A Transcriptional regulat 64.0 9.3 0.00032 26.9 4.5 30 100-129 26-55 (216)
476 3v6g_A Probable transcriptiona 63.9 5.7 0.0002 28.7 3.3 34 96-129 26-59 (208)
477 1vi0_A Transcriptional regulat 63.8 4.6 0.00016 28.9 2.8 29 101-129 25-53 (206)
478 2gen_A Probable transcriptiona 63.6 7.7 0.00026 27.4 3.9 30 100-129 23-52 (197)
479 3g1o_A Transcriptional regulat 63.3 7 0.00024 28.9 3.8 40 90-129 46-88 (255)
480 1ixc_A CBNR, LYSR-type regulat 63.3 11 0.00036 28.0 4.8 32 106-148 17-48 (294)
481 3nxc_A HTH-type protein SLMA; 63.3 1.9 6.6E-05 30.5 0.6 27 103-129 44-70 (212)
482 3crj_A Transcription regulator 63.2 4.8 0.00016 28.7 2.8 29 100-128 30-58 (199)
483 2oer_A Probable transcriptiona 63.1 3.4 0.00012 29.8 1.9 28 102-129 42-69 (214)
484 2id3_A Putative transcriptiona 63.0 6.6 0.00023 28.5 3.6 39 102-140 58-96 (225)
485 3rqi_A Response regulator prot 63.0 10 0.00035 26.7 4.5 36 93-128 145-180 (184)
486 2qwt_A Transcriptional regulat 63.0 5.9 0.0002 28.0 3.2 26 104-129 32-57 (196)
487 2of7_A Putative TETR-family tr 62.8 12 0.00041 27.8 5.1 28 101-128 65-92 (260)
488 2pij_A Prophage PFL 6 CRO; tra 62.7 4.3 0.00015 24.0 2.1 28 30-57 15-42 (67)
489 3szt_A QCSR, quorum-sensing co 62.6 6 0.00021 29.9 3.3 44 102-145 188-235 (237)
490 1zk8_A Transcriptional regulat 62.6 3.6 0.00012 28.5 1.9 26 103-128 27-52 (183)
491 2b0l_A GTP-sensing transcripti 62.4 5.8 0.0002 26.4 2.9 20 105-124 43-63 (102)
492 1y6u_A XIS, excisionase from t 62.4 5.1 0.00017 25.2 2.4 26 102-127 14-39 (70)
493 1sd4_A Penicillinase repressor 62.3 10 0.00036 25.1 4.2 32 93-124 13-48 (126)
494 2g7u_A Transcriptional regulat 62.1 16 0.00053 27.9 5.7 36 90-125 11-50 (257)
495 3rd3_A Probable transcriptiona 62.1 3.6 0.00012 28.6 1.9 28 101-128 27-54 (197)
496 2zcx_A SCO7815, TETR-family tr 62.0 7.3 0.00025 28.7 3.7 30 100-129 39-68 (231)
497 3col_A Putative transcription 61.9 3.5 0.00012 28.6 1.7 27 102-128 28-54 (196)
498 2np5_A Transcriptional regulat 61.9 5.3 0.00018 28.4 2.8 30 100-129 25-54 (203)
499 1bia_A BIRA bifunctional prote 61.8 11 0.00039 29.9 5.0 31 94-124 9-39 (321)
500 2xdn_A HTH-type transcriptiona 61.7 9.1 0.00031 27.1 4.1 29 100-128 27-55 (210)
No 1
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.67 E-value=2e-16 Score=110.78 Aligned_cols=83 Identities=37% Similarity=0.573 Sum_probs=77.7
Q ss_pred CcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHh--cCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Q 031871 59 STSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIL 136 (151)
Q Consensus 59 ~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~--~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l 136 (151)
+...+..++|.+++.+.+ ..+.+.++.+|+.+|. .+||||.+||+.+|+++++|++||+|+..|+.+.+
T Consensus 11 ~~~~~~~~~d~~~~~~~~---------~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l 81 (107)
T 2jvl_A 11 TEGQRLTKVDRSDDIIKP---------KTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNIL 81 (107)
T ss_dssp CCCCCCCCCCCCCCCCCC---------CCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHH
T ss_pred CcccccccccccccccCH---------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHH
Confidence 456788999999888887 7888999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC
Q 031871 137 TKLERALGVKLRGK 150 (151)
Q Consensus 137 ~kLa~~Lgv~l~e~ 150 (151)
.+||++|||++++.
T Consensus 82 ~~ia~~l~v~~~e~ 95 (107)
T 2jvl_A 82 SKMERVLNVKLRGA 95 (107)
T ss_dssp HHHHHTTTCBSSSS
T ss_pred HHHHHHHCcCHhhh
Confidence 99999999999874
No 2
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=99.60 E-value=1.6e-15 Score=97.20 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLIN--EKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lg--is~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
....++.+|+.+|..+|+||.+||+.+| +++++|++||+|+..|+.+.+.+||++|||++++
T Consensus 5 ~~~~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 5 YAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3567999999999999999999999999 9999999999999999999999999999999863
No 3
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=99.58 E-value=3.5e-15 Score=98.53 Aligned_cols=63 Identities=22% Similarity=0.126 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 86 DRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 86 ~~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..+...++.+|+.+|..+||||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 6 ~~~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 6 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDV 68 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 344578999999999999999999999999999999999999999999999999999999874
No 4
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.56 E-value=1.4e-14 Score=97.69 Aligned_cols=64 Identities=64% Similarity=0.926 Sum_probs=60.7
Q ss_pred CcchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 86 DRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 86 ~~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
+.+.+.++.+|+.+|..+||||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||++++
T Consensus 8 ~~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 8 DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp SCCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 4556789999999999999999999999999999999999999999999999999999999876
No 5
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.56 E-value=4.4e-15 Score=102.70 Aligned_cols=62 Identities=23% Similarity=0.126 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+...|+.+|+.+|.++||||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 24 ~~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 24 FLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 34568999999999999999999999999999999999999999999999999999999875
No 6
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.55 E-value=1.6e-14 Score=98.13 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=58.6
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
...+.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 5 ~~~~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~ 66 (94)
T 2kpj_A 5 KQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKS 66 (94)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHH
Confidence 34578999999999999999999999999999999999999999999999999999999975
No 7
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.55 E-value=1.4e-14 Score=93.17 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
...++.+|+.+|..+|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||++++
T Consensus 11 ~~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 11 LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRE 71 (74)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 4679999999999999999999999999999999999999999999999999999999863
No 8
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.54 E-value=1.2e-14 Score=95.96 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
.+.++.+|+.+|.++|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 10 ~~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~ 70 (80)
T 3kz3_A 10 ARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEE 70 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 4679999999999999999999999999999999999999999999999999999999864
No 9
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=99.54 E-value=8e-15 Score=96.82 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=57.4
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG-KAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G-~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.....|+.+|+.+|+++||||.+||+.+|+|+++|++||+| +..|+.+.+.+||++|||+++
T Consensus 6 ~~~~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 6 HHHHMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp --CTTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHH
T ss_pred cCCCCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 34568999999999999999999999999999999999999 899999999999999999864
No 10
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=99.53 E-value=2.3e-14 Score=96.16 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVK 146 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~ 146 (151)
...|+.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+|+++|||+
T Consensus 12 ~~~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 69 (86)
T 3eus_A 12 HVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL 69 (86)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 4569999999999999999999999999999999999999999999999999999986
No 11
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.53 E-value=1.3e-14 Score=95.90 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+.++.+|+.+|.++||||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 12 ~~~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~ 71 (83)
T 3f6w_A 12 YQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPY 71 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHH
Confidence 467999999999999999999999999999999999999999999999999999999864
No 12
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.53 E-value=9.1e-15 Score=94.90 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
....++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~ 67 (77)
T 2b5a_A 7 IKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPAS 67 (77)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 3577999999999999999999999999999999999999999999999999999999864
No 13
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=5.9e-15 Score=96.60 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.++.+|+.+|..+||||.+||+++|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 2 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~ 59 (77)
T 2k9q_A 2 ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLN 59 (77)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 4789999999999999999999999999999999999999999999999999999864
No 14
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.53 E-value=2.2e-14 Score=93.27 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
...++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 5 ~~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 5 GEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVH 65 (78)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHH
Confidence 46799999999999999999999999999999999999999 9999999999999999874
No 15
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.52 E-value=4.9e-15 Score=95.95 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
.++.+|+.+|.++|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||++++
T Consensus 8 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 8 KIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp CCCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 46778999999999999999999999999999999999999999999999999999863
No 16
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.51 E-value=1.1e-14 Score=102.02 Aligned_cols=61 Identities=18% Similarity=0.413 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
+.+.++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 6 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~ 66 (114)
T 3op9_A 6 IQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSID 66 (114)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 3456999999999999999999999999999999999999999999999999999999874
No 17
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.51 E-value=2e-14 Score=90.87 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++||++++
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPD 62 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 5899999999999999999999999999999999999999999999999999999864
No 18
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=99.50 E-value=2.6e-14 Score=100.50 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+...++.+|+.+|..+||||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~ 78 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 34568999999999999999999999999999999999999999999999999999999864
No 19
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=99.50 E-value=6e-14 Score=99.89 Aligned_cols=60 Identities=28% Similarity=0.372 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+.||.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 468999999999999999999999999999999999999999999999999999999975
No 20
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.50 E-value=3.2e-14 Score=91.90 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~ 62 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPD 62 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 5899999999999999999999999999999999999999999999999999999864
No 21
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.50 E-value=8.5e-14 Score=92.66 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
...++.+|+.+|.++||||.+||+.+|+++++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 16 ~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 16 RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVE 76 (83)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeE
Confidence 46789999999999999999999999999999999999998 5999999999999999986
No 22
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=99.49 E-value=5e-14 Score=95.90 Aligned_cols=59 Identities=7% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
+....+|+.+|.++||||.+||+++|||+++|++||+|+. |+.+.+.+||++|||++++
T Consensus 23 ~i~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~-~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 23 RVSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN-VSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp EEECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-CCHHHHHHHHHHHTCCGGG
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC-cCHHHHHHHHHHHCcCHHH
Confidence 3456799999999999999999999999999999999986 8999999999999999864
No 23
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.49 E-value=3.9e-14 Score=94.22 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
...++.+|+.+|..+|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 69 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 568999999999999999999999999999999999999999999999999999999875
No 24
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=99.49 E-value=3.3e-14 Score=97.23 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHH----HHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQV----IQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~----Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
|+.+|+.+|..+||||.+||+.+|+++++ |++||+|+..|+.+.+.+||++|||+++
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~ 62 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVS 62 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 58999999999999999999999999999 9999999999999999999999999986
No 25
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.48 E-value=1.3e-14 Score=102.19 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 86 DRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 86 ~~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
..+...++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 18 ~~~~~~~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~ 81 (111)
T 3mlf_A 18 LYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDD 81 (111)
T ss_dssp TSCCCSSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 3445678999999999999999999999999999999999999999999999999999999863
No 26
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.48 E-value=7e-14 Score=93.95 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
...++..|+.+|.++|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||++++
T Consensus 15 ~~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~ 75 (92)
T 1lmb_3 15 ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEE 75 (92)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 4678899999999999999999999999999999999999999999999999999998763
No 27
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=99.48 E-value=8.7e-14 Score=97.04 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 147 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l 147 (151)
+...+|.+|+.+|+++||||++||+++|+|+++|++||+|+ ++++.+.+|+.+||+..
T Consensus 33 l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~G~--~~~~~l~~i~~aL~~~~ 90 (101)
T 4ghj_A 33 LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGK--VQLDIMIAILMALDLTE 90 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTC--CBHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHCCC--CCHHHHHHHHHHcCCCc
Confidence 35789999999999999999999999999999999999997 56678999999999964
No 28
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.47 E-value=5.4e-14 Score=98.83 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.....|+.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~ 85 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVA 85 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHH
Confidence 34568999999999999999999999999999999999999999999999999999999874
No 29
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=99.47 E-value=2e-14 Score=90.35 Aligned_cols=57 Identities=30% Similarity=0.369 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
++.+|+.+|.++|+||.+||+.+|+|+++|++||+|+..|+.+.+.+|+++||++++
T Consensus 2 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 355789999999999999999999999999999999999999999999999999864
No 30
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=99.46 E-value=3.7e-14 Score=91.75 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~e 149 (151)
++.+|+.+|..+|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||++++
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~ 68 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQ 68 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 6889999999999999999999999999999999999999999999999999999763
No 31
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.46 E-value=7.9e-14 Score=88.45 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
|+.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.. +.+||++|||+++
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~~ 57 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSVD 57 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCHH
Confidence 7899999999999999999999999999999999999888877 9999999999864
No 32
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=99.45 E-value=1.6e-13 Score=96.00 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred HHHHHHHHH-HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQ-ARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~-~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
...|++|++ +|+++||||.+||+.+|||+++|++||+|++.|+.+.+.+|+++|||+++
T Consensus 12 ~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~ 71 (104)
T 3trb_A 12 IHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPE 71 (104)
T ss_dssp CCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 456999996 89999999999999999999999999999999999999999999999864
No 33
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.43 E-value=9.4e-14 Score=88.56 Aligned_cols=57 Identities=28% Similarity=0.251 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|... +.+|+++|||+++
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~i~~~l~~~~~ 59 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRF-LFEIAMALNCDPV 59 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCST-HHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHH-HHHHHHHHCCCHH
Confidence 58999999999999999999999999999999999999876544 9999999999864
No 34
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=1.5e-13 Score=97.39 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP------NQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p------~~~~l~kLa~~Lgv~l~ 148 (151)
.+.+|.+|+.+|+.+||||.+||+.+||++++|++||+|+..| ....+.+||++|||+++
T Consensus 5 ~~~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~ 70 (112)
T 2wus_R 5 WKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPD 70 (112)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHH
Confidence 4679999999999999999999999999999999999999764 35688999999999864
No 35
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.43 E-value=3e-13 Score=89.02 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH----HHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTK----LERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~k----La~~Lgv~l~ 148 (151)
.+.++.+|+.+|..+||||.+||+.+|+++++|++||+|+..|+.+.+.+ |+.+|||+++
T Consensus 8 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~ 71 (84)
T 2ef8_A 8 YRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD 71 (84)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHH
Confidence 57899999999999999999999999999999999999999999765555 5555599864
No 36
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.42 E-value=1.1e-13 Score=94.24 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERA--LGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~--Lgv~l~ 148 (151)
+.++.+|+.+|..+|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++ |+|+++
T Consensus 3 m~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~~~v~~~ 63 (99)
T 2l49_A 3 NTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTL 63 (99)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSS
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCHH
Confidence 35789999999999999999999999999999999999999999999999999 887765
No 37
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.42 E-value=2.6e-13 Score=102.63 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
+...++.+|+.+|+++||||++||+++|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 8 ~~~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~ 68 (192)
T 1y9q_A 8 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFS 68 (192)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 3567999999999999999999999999999999999999999999999999999999986
No 38
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.41 E-value=2e-13 Score=92.40 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..++++|+.+|..+|+||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 7 ~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 7 PRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHH
T ss_pred CChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 45799999999999999999999999999999999999999999999999999999864
No 39
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=99.41 E-value=3.4e-13 Score=96.51 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
...++.+|+.+|.++||||.+||+.+|+++++|++||+|+. .|+.+.+.+|+++|||+++
T Consensus 38 ~~~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~ 98 (120)
T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVE 98 (120)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcE
Confidence 56799999999999999999999999999999999999998 9999999999999999864
No 40
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.40 E-value=2e-13 Score=89.03 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..+.+|+.+|+..||||.+||+.+|+|+++|++||+|+..|+...+ +|+++|+++++
T Consensus 11 ~~g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~-~l~~~l~~~p~ 67 (73)
T 3fmy_A 11 VAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRVLDKHPE 67 (73)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH-HHHHHHHHCGG
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHH-HHHHHHCCCHH
Confidence 3588999999999999999999999999999999999999999988 99999998764
No 41
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=99.40 E-value=3.7e-13 Score=93.06 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG-KAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G-~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
|+.+|+.+|..+||||.+||+.+|+|+++|++||+| ...|+.+.+.+||++|||+++
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~ 59 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 59 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 588999999999999999999999999999999999 899999999999999999864
No 42
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=99.40 E-value=1.7e-13 Score=99.03 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCH------HHHHHHHHHhCCCCC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQ------QILTKLERALGVKLR 148 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~------~~l~kLa~~Lgv~l~ 148 (151)
.+|++|+++|+++||||+|||+++|+|+++|++||+|+..|+. ..+.+||++|||+++
T Consensus 3 ~~G~~lr~~R~~~gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHH
Confidence 5899999999999999999999999999999999999987765 779999999999875
No 43
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=99.40 E-value=3.9e-13 Score=92.65 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 17 ~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~~ 75 (104)
T 3cec_A 17 IHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPR 75 (104)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCHH
Confidence 56899999999999999999999999999999999999999999999999999999864
No 44
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.39 E-value=3.1e-13 Score=94.33 Aligned_cols=59 Identities=8% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHHHHHHH-HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQ-ARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~-~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..+|.+|+. +|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 9 ~~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 9 TTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp CCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred CChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 468999998 99999999999999999999999999999999999999999999999864
No 45
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=99.39 E-value=6.4e-13 Score=100.65 Aligned_cols=62 Identities=19% Similarity=0.416 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
...+.++.+|+++|+++||||.+||+++|+|+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 6 ~~~~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~ 68 (198)
T 2bnm_A 6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIG 68 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTG
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 3457899999999999999999999999999999999999999 9999999999999999975
No 46
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=99.39 E-value=1.4e-13 Score=94.46 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
+.++.+|+.+|..+||||.+||+.+||++++|++||+|+..|+.. +.+|+++|||+++
T Consensus 29 ~~~~~~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l~~~~~ 86 (99)
T 2ppx_A 29 APRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKIIAVDPE 86 (99)
T ss_dssp ---CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHHCcCHH
Confidence 568999999999999999999999999999999999999999988 7899999998764
No 47
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.36 E-value=1.7e-12 Score=86.20 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
...++.+|+.+|..+ ||.+||+.+|+++++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 14 ~~~~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~ 72 (86)
T 2ofy_A 14 GQRLGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLD 72 (86)
T ss_dssp HHHHHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 456999999999999 999999999999999999999998 8999999999999999864
No 48
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=99.34 E-value=1.3e-12 Score=95.26 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHh------cCCcCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARN------DKKLTQSQLAQLIN-----EKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~------~~glTQ~eLA~~lg-----is~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
...|+++|+.+|+ .+++||.+||+.+| +|+++|++||+|++ .|+.+.+.+||++|||+++
T Consensus 5 ~~~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~ 76 (135)
T 3r1f_A 5 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAA 76 (135)
T ss_dssp -CCHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTH
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHH
Confidence 3469999999999 58899999999999 99999999999997 8999999999999999975
No 49
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.33 E-value=5.8e-13 Score=97.65 Aligned_cols=59 Identities=27% Similarity=0.263 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+|+++||++++
T Consensus 67 ~~~g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~ 125 (141)
T 3kxa_A 67 KAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPL 125 (141)
T ss_dssp HHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHH
Confidence 45678899999999999999999999999999999999999999999999999999864
No 50
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=99.28 E-value=6.1e-12 Score=90.50 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHh------cCCcCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARN------DKKLTQSQLAQLIN-----EKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~------~~glTQ~eLA~~lg-----is~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
..|+++|..++. ..++||.+||+.+| +|+++|++||+|++ .|+.+.+.+||++|||+++
T Consensus 4 ~~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~ 74 (123)
T 3qwg_A 4 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAA 74 (123)
T ss_dssp CCHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTH
T ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 358999999998 67899999999998 99999999999997 8999999999999999985
No 51
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.27 E-value=4.6e-12 Score=99.59 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..+|.+|+.+|..+||||.+||+.+ +|+++|++||+|++.|+.+.+.+||+.|||+++
T Consensus 4 ~~~g~~i~~~R~~~~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~ 61 (293)
T 3u3w_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII 61 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 5799999999999999999999999 999999999999999999999999999999985
No 52
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=99.27 E-value=2e-12 Score=85.02 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCC
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALG--VKL 147 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lg--v~l 147 (151)
++|+.+|+.+| ||.+||+.+||++++|++||+|+..| .+.+.+|+++|| |++
T Consensus 2 ~~l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p-~~~l~~ia~~l~~~v~~ 55 (79)
T 3bd1_A 2 NAIDIAINKLG-SVSALAASLGVRQSAISNWRARGRVP-AERCIDIERVTNGAVIC 55 (79)
T ss_dssp CHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCC-GGGHHHHHHHTTTSSCH
T ss_pred hHHHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCC-HHHHHHHHHHHCCCCcH
Confidence 36899999999 99999999999999999999999988 999999999999 874
No 53
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=99.24 E-value=6.6e-13 Score=106.60 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+.++.+|+.+|+++||||.+||+++|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 28 ~~~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~ 87 (311)
T 4ich_A 28 SDELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVN 87 (311)
T ss_dssp ------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChh
Confidence 367999999999999999999999999999999999999999999999999999999985
No 54
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=99.23 E-value=1.1e-11 Score=101.05 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhc------CCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCCC
Q 031871 90 SELKKAIVQARND------KKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLRG 149 (151)
Q Consensus 90 ~~~~~~Lk~~R~~------~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~e 149 (151)
..||.+|+.+|++ +||||.|||+.+|||+++|++||+|+. .|+.+.+.+||++|+|+++|
T Consensus 5 ~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~e 71 (292)
T 3pxp_A 5 AAFGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGE 71 (292)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHccCccCcCCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHH
Confidence 5799999999999 999999999999999999999999996 99999999999999999865
No 55
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.17 E-value=1.2e-11 Score=100.95 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
+.+|.+|+.+|.++|+||++||+.+ +|+++|++||+|++.|+.+.+.+||+.|||+++
T Consensus 2 m~ig~~lk~~R~~~gltq~~la~~~-is~~~is~~E~g~~~~~~~~l~~i~~~l~v~~~ 59 (317)
T 2awi_A 2 FKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFF 59 (317)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHh-cCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHH
Confidence 3589999999999999999999999 999999999999999999999999999999875
No 56
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.15 E-value=2.5e-11 Score=94.10 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+.++++|+++|.++|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 15 ~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~~~ 74 (236)
T 3bdn_A 15 ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVE 74 (236)
T ss_dssp HHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 357999999999999999999999999999999999999999999999999999999875
No 57
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=99.13 E-value=3.5e-11 Score=86.30 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
+.+|+.+|+.+||||.+||+.+|+|+++|++||+|+..|+... .+|+++|+++++
T Consensus 73 ~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g~~~p~~~~-~~l~~~~~~~p~ 127 (133)
T 3o9x_A 73 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPE 127 (133)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHccCHH
Confidence 5789999999999999999999999999999999999998876 678888886653
No 58
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.13 E-value=4.8e-12 Score=93.63 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
++.+|+.+|...|+||.+||+++|+|+++|++||+|...|+.+.+.+||+.||+++.
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~~v~~~ 58 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYV 58 (158)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 688999999999999999999999999999999999999999999999999999875
No 59
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=99.12 E-value=4.8e-11 Score=79.78 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 145 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv 145 (151)
...+..+|+.+|. ||+|.+||+.+||+++||+.+|+|+..|+++ .+||++||.
T Consensus 19 ~~~~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~--~kIAk~fg~ 71 (83)
T 2l1p_A 19 HTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS--AAKCQEFGR 71 (83)
T ss_dssp HHHHHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCC--SHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCch--HHHHHHHHH
Confidence 4678899999999 9999999999999999999999999999988 799999973
No 60
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.11 E-value=1.5e-11 Score=96.65 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
+.+|.+|+.+|..+||||.+||+.+ +|+++|++||+|+..|+.+.+.+|++.|||+++
T Consensus 4 ~~~g~~i~~~r~~~~~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~ 61 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII 61 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 5799999999999999999999999 999999999999999999999999999999875
No 61
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=99.04 E-value=2e-10 Score=75.62 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
..+|+.++.++|+||.+||+.+|+|+++|++|+++ |.+.....||++|||+++
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~---~~p~~~~~IA~aLgv~~~ 63 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANALETKPE 63 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS---SCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC---CCccHHHHHHHHHCcCHH
Confidence 56788888899999999999999999999999997 334444569999999975
No 62
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.02 E-value=4.9e-10 Score=84.18 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 147 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l 147 (151)
.+.++++|+++|..+ ||.+||+++|+|+++|++||+|...| .+.+.+||++|||++
T Consensus 7 ~~~~~~rl~~~r~~~--tq~elA~~~Gis~~~i~~~e~g~~~p-~~~l~~ia~~~~v~~ 62 (189)
T 2fjr_A 7 NVDVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAIS-YDFAAHCALETGANL 62 (189)
T ss_dssp HHHHHHHHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSSSCC-HHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHhhc--CHHHHHHHhCcCHHHHHHHHhCCCCC-HHHHHHHHHHHCCCH
Confidence 467999999999888 99999999999999999999999999 999999999999986
No 63
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.78 E-value=1e-08 Score=77.60 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTK 138 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~k 138 (151)
.++|+.+|+++|+||+++|+.+|||+++|++||+|++.|+...+.+
T Consensus 92 ~~~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~G~r~iP~~~~la 137 (170)
T 2auw_A 92 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLA 137 (170)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 5689999999999999999999999999999999999887776433
No 64
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.65 E-value=6.1e-08 Score=72.24 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
...+.++|..+|.++|||++++|+.+|+|...+..++.|...|+.+.+.+|+++||++.+
T Consensus 11 ~~~~~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e 70 (156)
T 1dw9_A 11 RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDED 70 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 367899999999999999999999999999999999999999999999999999998754
No 65
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=98.62 E-value=9.9e-11 Score=83.42 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=45.2
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcC------CCCCCHHHHHHHHHHhCCCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESG------KAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G------~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
|+ +||||.+||+++|+|+++|++||+| +..|+.+.+.+|+..|+++++
T Consensus 2 R~-~glTQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l~v~~~ 55 (122)
T 1nr3_A 2 RE-RGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCR 55 (122)
T ss_dssp CC-CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCEEEEEC
T ss_pred cc-cCCCHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHHccccc
Confidence 56 8999999999999999999999999 888999999999999998875
No 66
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=98.42 E-value=3e-07 Score=57.78 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=34.0
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 147 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l 147 (151)
++||.+||+.+|||+++|++|| .. ++...+.+|+++||..+
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we--~~-~p~~~~~~i~~~~~g~v 50 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK--EV-IPEKDAYRLEIVTAGAL 50 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC--SB-CCHHHHHHHHHHTTSCS
T ss_pred cCCHHHHHHHhCCCHHHHHHHH--hh-CCHHHHHHHHHHHCCCc
Confidence 4599999999999999999999 33 34456669999999655
No 67
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.27 E-value=2.4e-06 Score=66.95 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 139 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kL 139 (151)
-...|+..|+.+|..+||||.+||+.+|||+++|++||++....+...+..+
T Consensus 28 ~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~g~~~t~~k~a~~ 79 (221)
T 2h8r_A 28 DPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAAL 79 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCchhHHHHHHH
Confidence 3478899999999999999999999999999999999997777777655444
No 68
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=98.26 E-value=2e-06 Score=54.97 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=37.4
Q ss_pred cCHHHHHHHhCCCHHHHHHHHcCCC---CCCHHHHHHHHH---HhCCCCC
Q 031871 105 LTQSQLAQLINEKPQVIQEYESGKA---IPNQQILTKLER---ALGVKLR 148 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~G~~---~p~~~~l~kLa~---~Lgv~l~ 148 (151)
+|+.|||+.+|+|++||+++++|+. .++.++..+|.+ .||..++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999998 788877666554 6887765
No 69
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=98.23 E-value=1.2e-06 Score=72.47 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
.+-.|+.+|...|+||.+||++.||++..|+.+|+|+. .+..+.+.+|+++|+++.+
T Consensus 231 agv~LR~ar~ReglTQ~~LAe~TGIPq~hISeMenGKr~~IGkdeaR~LA~ALnvDYR 288 (443)
T 3g7d_A 231 AGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYR 288 (443)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHhcCCcCCccHHHHHHHHHHhCCCch
Confidence 47789999999999999999999999999999999998 5699999999999999864
No 70
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=98.16 E-value=5.3e-07 Score=69.33 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH----------------HcCCCCCCHHHHHHHHHHh
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY----------------ESGKAIPNQQILTKLERAL 143 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~----------------E~G~~~p~~~~l~kLa~~L 143 (151)
-.++|.++..+ ...|+||.++|+.+|||+++|+++ ++|...|+...|.+++..|
T Consensus 10 l~eiG~ria~~-y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l 79 (192)
T 1zx4_A 10 IREIGLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEM 79 (192)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccCccchHHHHHHHHHHh
Confidence 46789999998 789999999999999999999997 7999999999999999999
No 71
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=98.06 E-value=7.6e-06 Score=52.52 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=37.9
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH---HHHHHHhCCCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQIL---TKLERALGVKLR 148 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l---~kLa~~Lgv~l~ 148 (151)
.+|+.|+|+.+|+|++||+++++|...++.++. .++++.||..++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 479999999999999999999999988888774 455778887654
No 72
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=98.00 E-value=4.8e-06 Score=52.13 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=34.5
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQ 133 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~ 133 (151)
+|+.+|.+.| ||.++|+.+|+|+++|++||+|.+.|++
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~~~~~~l 42 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcCCCCCCe
Confidence 5788999999 9999999999999999999999877653
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.00 E-value=1.7e-05 Score=60.90 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIL 136 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l 136 (151)
...|+.+|+.++..+|+||.+||+.+|+|+++|++|++|...++....
T Consensus 28 p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kr 75 (194)
T 1ic8_A 28 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKR 75 (194)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCcccccccc
Confidence 467899999999999999999999999999999999998877766543
No 74
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=97.96 E-value=2.3e-05 Score=55.60 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLIN--EKPQVIQEYESGKAIPNQQILTKLER 141 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lg--is~s~Is~~E~G~~~p~~~~l~kLa~ 141 (151)
...|+.+|..+||||.|.|..+| ++..+..+||+|++.++.++...+..
T Consensus 5 ~~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqWE~G~~~IP~~i~e~~~~ 55 (120)
T 1s4k_A 5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 45689999999999999999998 89999999999999999887776653
No 75
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=97.53 E-value=0.00016 Score=46.89 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=33.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 031871 106 TQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 147 (151)
Q Consensus 106 TQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l 147 (151)
+|.+||+.||||+++|++|++|.. ++......|..+-+-.+
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g~~-iP~~~~~~Ie~~T~G~v 52 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQAGE-IPPLRQSDIEVRTAYKL 52 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHTS-CCHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCC-CCHHHHHHHHHHhCCcc
Confidence 699999999999999999999855 45666778888776544
No 76
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.46 E-value=0.0001 Score=55.69 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhcCCc--CHHHHHHHhCCC-HHHHHHHHc
Q 031871 89 PSELKKAIVQARNDKKL--TQSQLAQLINEK-PQVIQEYES 126 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~gl--TQ~eLA~~lgis-~s~Is~~E~ 126 (151)
...+.++|+++|+++|+ ||.|||+.+|++ +++|++|++
T Consensus 8 q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 35789999999999999 999999999999 999999987
No 77
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=97.41 E-value=0.0002 Score=45.67 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=30.3
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPN 132 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~ 132 (151)
.|+.++.+. ||.++|+.+|+++++||+|+++.+.+.
T Consensus 6 ~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~r~i~ 41 (65)
T 2cw1_A 6 DLKKFVEDK--NQEYAARALGLSQKLIEEVLKRGLPVY 41 (65)
T ss_dssp CHHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhcCCce
Confidence 477777776 999999999999999999998765443
No 78
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=97.37 E-value=0.00016 Score=49.23 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCC-CCCCHHHHHHHHHHhCC
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK-AIPNQQILTKLERALGV 145 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~-~~p~~~~l~kLa~~Lgv 145 (151)
..|.++....++|..|+|+.+|+|.+||+++.++. ..++.++..++.++||.
T Consensus 10 ~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~algY 62 (93)
T 2l0k_A 10 IKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDY 62 (93)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCC
Confidence 34555555567999999999999999999999997 77899999999888764
No 79
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=97.29 E-value=0.00014 Score=57.82 Aligned_cols=114 Identities=10% Similarity=0.019 Sum_probs=27.5
Q ss_pred eccCCCCCccccCHHHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccchhhhHHHHHhh-------------
Q 031871 16 IKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALLLSVLY------------- 82 (151)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~------------- 82 (151)
||.+-..-...++=++.+.|++.|++.+|+.+||+|...|....+.+.+..++.+.+.+-....-..
T Consensus 31 ~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 110 (311)
T 4ich_A 31 LRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTVAAVPAPTARSR 110 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccccCCCCcccccC
Confidence 4444333444455677889999999999999999999888776666666666655433321000000
Q ss_pred -----ccCCcchHHHHHHHHHHHhc---CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 83 -----CTDDRVPSELKKAIVQARND---KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 83 -----~~~~~~~~~~~~~Lk~~R~~---~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.........+-....++-.+ .++|..++|+.+|||+.++..+-.++.
T Consensus 111 ~~~~~~~~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe 165 (311)
T 4ich_A 111 SAPAGEPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKK 165 (311)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 00000011222222333333 457999999999999999999876654
No 80
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=97.12 E-value=0.0006 Score=45.54 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=34.7
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
-++|..+|+.+|++.++||+|.+|. .+.+..|..+||..+.
T Consensus 24 ~~gQ~~vAe~~GvdeStISR~k~~~----~~~~~~lLa~Lglkvv 64 (83)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWKRDW----IPKFSMLLAVLEWGVV 64 (83)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHHHHT----HHHHHHHHHHHTTCCC
T ss_pred HHhhHHHHHHhCCCHHHHhhhhhhH----HHHHHHHHHHhccCCC
Confidence 3689999999999999999999974 5677788888887763
No 81
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=96.79 E-value=7.4e-05 Score=51.42 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=24.8
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
...+++|..+|+.+||+.++||+|++|.
T Consensus 20 ~la~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 20 KIAMLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 3346899999999999999999999975
No 82
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=96.56 E-value=0.0019 Score=47.88 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.3
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCCCCCH-HHHHHHHHHh
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKAIPNQ-QILTKLERAL 143 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~~p~~-~~l~kLa~~L 143 (151)
|+|+.++|+.+|||++||.+|.+. .|.. +.+.++++.|
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~--~p~~~~~l~~vad~~ 86 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK--NQDFIAFKSEVADSF 86 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc--CcchHHHHHHHHHHH
Confidence 899999999999999999999995 4664 6777777764
No 83
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.44 E-value=0.0059 Score=36.29 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
....+..+ ...|+|+.++|+.+|+|++||++|.+
T Consensus 20 ~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 20 LVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34455555 35799999999999999999999865
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.43 E-value=0.0074 Score=34.14 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
.....+..+. ..|+|+.++|+.+|+|++||.+|.+.
T Consensus 9 ~~~~~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 9 TERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 3333444443 46899999999999999999999753
No 85
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=96.37 E-value=0.0032 Score=43.45 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH--hcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q 031871 90 SELKKAIVQAR--NDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALG 144 (151)
Q Consensus 90 ~~~~~~Lk~~R--~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lg 144 (151)
..+..|+.-.+ ....+||.|+|+.+|+|++||+++-+--...+.+.-..|.+.|.
T Consensus 42 ~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi~r~L~~l~~~~k~~l~~~l~ 98 (101)
T 1jhg_A 42 EALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL 98 (101)
T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHHHHHHHHccHHHHHHHHHHhc
Confidence 44555555443 23339999999999999999999955445567777777777664
No 86
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.64 E-value=0.015 Score=46.09 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=36.9
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH---HHHHhCCCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTK---LERALGVKLR 148 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~k---La~~Lgv~l~ 148 (151)
.+..|.+|+|+.+|||.+|||+..||...++.++..+ .++.||..+.
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn 57 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPN 57 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 3458999999999999999999999998887766555 4666776543
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.63 E-value=0.013 Score=33.63 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
.+..+. ..|+|..++|+.+|+|++||.+|.+..
T Consensus 13 ~i~~l~-~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 13 QISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 344443 357999999999999999999997643
No 88
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=95.50 E-value=0.029 Score=37.90 Aligned_cols=40 Identities=8% Similarity=0.217 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 86 DRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 86 ~~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.....++-..+..+.. .|+|..++|+.+|+|++||.+|.+
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445556666665553 799999999999999999999854
No 89
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=95.41 E-value=0.033 Score=41.16 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHH
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKLE 140 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgi------s~s~Is~~E~G~~~p~~~~l~kLa 140 (151)
.+.|++.++..|...|+||.+++..+|. |+++|+++|.-. .+...+.+|-
T Consensus 15 l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~--ls~kn~~klk 70 (164)
T 2xsd_C 15 LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCKLK 70 (164)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC--SBHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccC--CCHHHHHHcc
Confidence 3789999999999999999999999987 999999999743 4555555543
No 90
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.26 E-value=0.017 Score=46.21 Aligned_cols=45 Identities=7% Similarity=0.029 Sum_probs=35.8
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH---HHHHHhCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT---KLERALGVK 146 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~---kLa~~Lgv~ 146 (151)
.+..|.+|+|+++|||.+|||+..||...++.++.. +.++.||-.
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~ 54 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYL 54 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 456799999999999999999999998777766544 456677764
No 91
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=95.24 E-value=0.038 Score=40.55 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKL 139 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgi------s~s~Is~~E~G~~~p~~~~l~kL 139 (151)
...|+..++..|...|+||.+++..+|. ++++|+++|.=. ++...+.++
T Consensus 9 ~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~--lS~knm~kl 63 (160)
T 1e3o_C 9 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMSKL 63 (160)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC--SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccC--CChHHHHhc
Confidence 3679999999999999999999999998 999999999853 455544444
No 92
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=95.24 E-value=0.029 Score=40.63 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKLER 141 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgi------s~s~Is~~E~G~~~p~~~~l~kLa~ 141 (151)
+.|++.++.-|...|+||.+++..+|. |+++|+++|.=. ++...+.+|--
T Consensus 6 ~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~--ls~knm~kLkP 61 (146)
T 1au7_A 6 EQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ--LSFKNACKLKA 61 (146)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC--SBHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccC--CChHHHHhcch
Confidence 678999999999999999999999987 999999999843 55555555443
No 93
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.13 E-value=0.04 Score=37.87 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
...++..+--..|+||.|+|+.+|+|+++|+++.+
T Consensus 22 ~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~ 56 (101)
T 2w7n_A 22 QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 44555566677899999999999999999998743
No 94
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=95.08 E-value=0.015 Score=36.76 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
|+.+.... ||.++|+.|||++++||+|.++.+
T Consensus 7 L~~~~~~~--s~t~aA~~L~vtQ~AVS~~ir~~r 38 (66)
T 2ovg_A 7 LKDYAMRF--GQTKTAKDLGVYPSSINQAIHAGR 38 (66)
T ss_dssp HHHHHHHH--CHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHC--CHHHHHHHhCCCHHHHHHHHHhCC
Confidence 44444444 899999999999999999987543
No 95
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.88 E-value=0.096 Score=36.13 Aligned_cols=76 Identities=8% Similarity=0.101 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHHH
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQSQ 109 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~e 109 (151)
+.-..|+..|++..|+.+|-.-............. ..+....-..|..+.....+|..+
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~---------------------~~l~~~~~~~i~~~~~~~~~s~~~ 82 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRR---------------------KALSVRDERNVIRAASNSCKTARD 82 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCC---------------------CSSCHHHHHHHHHHHHHCCCCHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCC---------------------CcCCHHHHHHHHHHHhCCCCCHHH
Confidence 44668999999999999987543221000000001 112223334444445566799999
Q ss_pred HHHHhC--CCHHHHHHHHc
Q 031871 110 LAQLIN--EKPQVIQEYES 126 (151)
Q Consensus 110 LA~~lg--is~s~Is~~E~ 126 (151)
+|..+| +|.++|.+|..
T Consensus 83 i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 83 IRNELQLSASKRTILNVIK 101 (141)
T ss_dssp HHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHCCCccHHHHHHHHH
Confidence 999999 89999999975
No 96
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.68 E-value=0.064 Score=35.40 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHhcC-CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 88 VPSELKKAIVQARNDK-KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~-glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
....+-..+-.+.... |+|..++|+.+|||+++|.+|-+
T Consensus 6 ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHH
Confidence 3445544444444445 89999999999999999999963
No 97
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.63 E-value=0.06 Score=38.05 Aligned_cols=40 Identities=8% Similarity=0.234 Sum_probs=31.2
Q ss_pred CcchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 86 DRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 86 ~~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.....++-..+..+.. .|+|..++|+.+|+|++||.+|-+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445566666666653 699999999999999999999953
No 98
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=94.45 E-value=0.065 Score=35.02 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..++-..+..+. ..|.|..++|+.+||++++|.+|.+
T Consensus 24 s~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 24 TPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344443444444 3689999999999999999999964
No 99
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=94.42 E-value=0.2 Score=36.25 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKL 139 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgi------s~s~Is~~E~G~~~p~~~~l~kL 139 (151)
.+.|++.++.-|...|+||.+++..+|. |+++|+++|.-.. +...+.++
T Consensus 6 ~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~l--s~kn~~kl 60 (151)
T 3d1n_I 6 IREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDI--TPKSAQKL 60 (151)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCC--ChhHHHHh
Confidence 3679999999999999999999999997 9999999998653 44444444
No 100
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.16 E-value=0.09 Score=31.72 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCcC----HHHHHHHhCCCHHHHHHHHc
Q 031871 89 PSELKKAIVQARNDKKLT----QSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glT----Q~eLA~~lgis~s~Is~~E~ 126 (151)
..+|-..+... ...|.| ..++|+.+||++++|.+|.+
T Consensus 7 s~efK~~~~~~-~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 7 TPHFKLQVLES-YRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CHHHHHHHHHH-HHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CHHHHHHHHHH-HHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45555555333 345788 99999999999999999975
No 101
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=94.14 E-value=0.0087 Score=47.34 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH---HHHHHhCCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT---KLERALGVKL 147 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~---kLa~~Lgv~l 147 (151)
+..|.+|+|+++|||.+|||+..||...++.++.. +.++.||-.+
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~p 51 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRP 51 (332)
T ss_dssp ------------------------------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 35799999999999999999999998666655544 4556666543
No 102
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=94.00 E-value=0.038 Score=34.51 Aligned_cols=24 Identities=21% Similarity=0.399 Sum_probs=21.8
Q ss_pred cCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 105 LTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
||..|+|+.+|||++||.+|....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 789999999999999999998743
No 103
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=94.00 E-value=0.16 Score=34.70 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHh-CCCHHHHHHHHcCCCCCCH------HHHHHHHHHhCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLI-NEKPQVIQEYESGKAIPNQ------QILTKLERALGVKL 147 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~l-gis~s~Is~~E~G~~~p~~------~~l~kLa~~Lgv~l 147 (151)
...+...|+...+.++++|.-||+.+ +-|+.+++.+.+-+..|.+ +.|.+|-..|..+.
T Consensus 19 Tk~i~~~I~~ELK~~~IsQa~FAk~vlnRsQGtLSelLR~~enPkP~~~~lW~~Lk~m~nWL~Lpe 84 (101)
T 2csf_A 19 TAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQ 84 (101)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHhchhHHHHHHhcccCCCcchhhHHHHHHHHHHHHcCCH
Confidence 46788999999999999999999975 9999999999985555544 56667777776654
No 104
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=93.84 E-value=0.1 Score=35.87 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHH-hCCCHHHHHHHHcCCCCC---C---HHHHHHHHHHhC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQL-INEKPQVIQEYESGKAIP---N---QQILTKLERALG 144 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~-lgis~s~Is~~E~G~~~p---~---~~~l~kLa~~Lg 144 (151)
...+...|+++....++||+-||+. +|.++.+++.+.+--..- + .+...++-.-|.
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~nWL~ 81 (101)
T 1x2l_A 19 TAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLS 81 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHHHHcc
Confidence 3678999999999999999999998 899999999998864321 2 345555555554
No 105
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=93.75 E-value=0.092 Score=33.83 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHHHHcCCChhhHHhhhc--CCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHH
Q 031871 31 VVNAARRAGADIETVRKSHA--GTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQS 108 (151)
Q Consensus 31 ~~~~a~r~g~~v~t~~k~~~--g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~ 108 (151)
.-+.|+..|+++.|++.|+. |-..|..+.. ..-+..+. + ....-..|+.+|...|++.+
T Consensus 8 i~e~A~~~gvs~~tlR~ye~~~gl~~p~r~~~-~g~R~Y~~--~----------------dl~~l~~I~~l~~~~G~sl~ 68 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWERRYGFPRPLRSEG-NNYRVYSR--E----------------EVEAVRRVARLIQEEGLSVS 68 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHTCCSCCBSSSC-SSSCEECH--H----------------HHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHhCCCCCCcCCCC-CCeeecCH--H----------------HHHHHHHHHHHHHHCCCCHH
Confidence 34689999999999999987 3333322110 00011111 1 12234557777777899999
Q ss_pred HHHHHh
Q 031871 109 QLAQLI 114 (151)
Q Consensus 109 eLA~~l 114 (151)
++.+.+
T Consensus 69 ei~~~l 74 (81)
T 2jml_A 69 EAIAQV 74 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 106
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=93.66 E-value=0.21 Score=36.30 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHHH
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLIN------EKPQVIQEYESGKAIPNQQILTKLER 141 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lg------is~s~Is~~E~G~~~p~~~~l~kLa~ 141 (151)
.+.|+..++.-|...|+||.++...+| .|+++|.++|.-. .+...+.+|--
T Consensus 12 l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~--ls~~nm~kLkP 68 (155)
T 3l1p_A 12 LEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQ--LSLKNMSKLRP 68 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHhhhheecccHHHHHHHHHhhcCccccccccccccccc--CChhhHhhcch
Confidence 467999999999999999999888754 7999999999854 45555555433
No 107
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=93.49 E-value=0.087 Score=37.73 Aligned_cols=38 Identities=8% Similarity=0.240 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 88 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 88 ~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
....+...|..+. ..|+|..++|+.+|+|++||.+|-+
T Consensus 26 ~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 26 LPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp SCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445555555555 3689999999999999999999965
No 108
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.41 E-value=0.014 Score=46.24 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH---HHHHHHhCCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIL---TKLERALGVKL 147 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l---~kLa~~Lgv~l 147 (151)
+..|.+|+|+.+|||.+|||+..||...++.++. .+.++.||-.+
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~p 50 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVP 50 (339)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 3578999999999999999999999866655544 44555566543
No 109
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=93.33 E-value=0.37 Score=33.00 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHH-hCCCHHHHHHHHcCCCC---CC---HHHHHHHHHHhCCCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQL-INEKPQVIQEYESGKAI---PN---QQILTKLERALGVKLRGK 150 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~-lgis~s~Is~~E~G~~~---p~---~~~l~kLa~~Lgv~l~e~ 150 (151)
...+..+|+++....+++|+.||+. +|.++.+++.+.+--.. .+ .+...++-..|..+.+++
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~nWL~l~e~qr 87 (101)
T 1wh6_A 19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQA 87 (101)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHHHhCCcHHHH
Confidence 4789999999999999999999995 79999999999885432 23 566778877777666543
No 110
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.27 E-value=0.16 Score=35.01 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.......|..+. ..|+|..++|+.+|+|++||.+|-+
T Consensus 8 s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~ 44 (141)
T 1u78_A 8 SDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344455555555 4799999999999999999999863
No 111
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=93.27 E-value=0.13 Score=44.23 Aligned_cols=51 Identities=6% Similarity=0.040 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCcCHHHHHHHh------CCCHHHHHHHHcCCCCC---CHHHHHHHHHHhCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLI------NEKPQVIQEYESGKAIP---NQQILTKLERALGV 145 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~l------gis~s~Is~~E~G~~~p---~~~~l~kLa~~Lgv 145 (151)
...|++++.. +||++||+.| +.+..+|.+||+|+..| +...+..|-..+-.
T Consensus 20 ~~~~~~~~~~--~~~~~~a~~l~~~~~~~~~~~~~~rw~~~~~~~~~~~~~~~~~l~~~~~~ 79 (482)
T 3me5_A 20 QAMLEKLLQI--YDVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPK 79 (482)
T ss_dssp HHHHHHHHTT--SCHHHHHHHHHHTCSSCCCHHHHHHHHC-------CCTHHHHHHHTTSCC
T ss_pred HHHHHHHHHH--cCHHHHHHHHHhhccCCCCHHHHHHHHcCCCCCccccHHHHHHHHhhCCC
Confidence 3556666654 7999999999 89999999999998765 44555666555544
No 112
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=93.15 E-value=0.16 Score=35.21 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.8
Q ss_pred HHHHHHHHHHH-hcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 90 SELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 90 ~~~~~~Lk~~R-~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..++.|++-++ ...|+|+.++|+.+|+|.+||+++-+
T Consensus 43 ~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 43 LSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 56676666554 44789999999999999999998754
No 113
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=92.78 E-value=0.14 Score=36.09 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH-hcCCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 90 SELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 90 ~~~~~~Lk~~R-~~~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
..+..|++-++ ...|+|+.|+|+.+|+|..||+++-+-
T Consensus 60 ~aLs~R~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 60 QSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35666665554 346899999999999999999987553
No 114
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.76 E-value=0.21 Score=30.72 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.7
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..|+|.+|+|+.+|+|.++|..+..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4799999999999999999998764
No 115
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=92.67 E-value=0.21 Score=37.37 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+.+..++.+... |+||.++|+++|+|+++|+++.+
T Consensus 38 piE~A~a~~~L~~~-G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 38 PREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHH
Confidence 35566777777664 99999999999999999999865
No 116
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=92.61 E-value=0.022 Score=45.27 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 147 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~---l~kLa~~Lgv~l 147 (151)
+..|.+|+|+++|||.+|||+..||...++.++ +.+.++.||..+
T Consensus 5 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~p 52 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVP 52 (333)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 347899999999999999999999987666555 444556666543
No 117
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.60 E-value=0.13 Score=33.13 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHHHHHhcC---CcCHHHHHHHhCCCHHHHHHH
Q 031871 95 AIVQARNDK---KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 95 ~Lk~~R~~~---glTQ~eLA~~lgis~s~Is~~ 124 (151)
.|..++..- ++|..|||+.+|+++++|++.
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 344455555 799999999999999999876
No 118
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=92.55 E-value=0.22 Score=30.23 Aligned_cols=32 Identities=9% Similarity=-0.038 Sum_probs=26.1
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+-.++-..|+|+.++|+.+|+|.++|..+-.
T Consensus 22 ~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 22 EALLLTQLLGLSYADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34445557899999999999999999998654
No 119
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=92.53 E-value=0.019 Score=36.23 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAA 56 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~ 56 (151)
++.+.|.+.|++..|+.+||+|...|.
T Consensus 26 tq~elA~~~gvs~~tis~~E~G~~~p~ 52 (73)
T 3fmy_A 26 TQKEASEIFGGGVNAFSRYEKGNAXPH 52 (73)
T ss_dssp CHHHHHHHHCSCTTHHHHHHTTSSCCC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCCCC
Confidence 456789999999999999999987653
No 120
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=92.52 E-value=0.023 Score=45.44 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred cCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH---HHHHHHhCCCC
Q 031871 105 LTQSQLAQLINEKPQVIQEYESGKAIPNQQIL---TKLERALGVKL 147 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l---~kLa~~Lgv~l 147 (151)
.|.+|+|+++|||.+|||+..||...++.++. .+.++.||-.+
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~aa~~lgY~p 54 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRA 54 (348)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 58999999999999999999999766665554 44455666543
No 121
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=92.49 E-value=0.023 Score=45.37 Aligned_cols=45 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 147 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~---l~kLa~~Lgv~l 147 (151)
+-.|.+|+|+++|||.+|||+..||...++.++ +.+.++.||..+
T Consensus 11 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~p 58 (355)
T 3e3m_A 11 RPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVP 58 (355)
T ss_dssp ------------------------------------------------
T ss_pred CCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 457899999999999999999999986666555 444555566543
No 122
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=92.33 E-value=0.21 Score=39.90 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+..++..+....++||.|||+.+|+|+.||++..
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL 42 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLL 42 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456677888888999999999999999999999873
No 123
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=92.28 E-value=0.026 Score=35.08 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAAS 57 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~ 57 (151)
++.+.|++.|++.+|+.+|+.|...|..
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~~~~ 50 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQPSL 50 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSCCCH
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCH
Confidence 4567999999999999999999876533
No 124
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.06 E-value=0.25 Score=32.20 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+-.++-..|+|.+|+|+.+|+|.++|..+..
T Consensus 43 r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334456678899999999999999999998764
No 125
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=91.87 E-value=0.028 Score=33.68 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+|+.+|+.|...|
T Consensus 16 s~~~lA~~~gis~~~i~~~e~g~~~~ 41 (66)
T 2xi8_A 16 SQSELAALLEVSRQTINGIEKNKYNP 41 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 45679999999999999999998764
No 126
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=91.86 E-value=0.034 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+++.+|+.|...|
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~~~ 53 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQRNV 53 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCCC
Confidence 45678999999999999999998654
No 127
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=91.85 E-value=0.028 Score=35.70 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAAS 57 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~ 57 (151)
++.+.|.+.|++.+++.+|++|...|..
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g~~~~~~ 54 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNGINALNA 54 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSCCCH
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCCCCH
Confidence 4567999999999999999999876533
No 128
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.78 E-value=0.17 Score=33.76 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=24.9
Q ss_pred HHHHHh--cCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 96 IVQARN--DKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 96 Lk~~R~--~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
++.+.. ..|++|+|||+.+++++++|+++.
T Consensus 26 l~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iL 57 (91)
T 2dk5_A 26 YQIIEDAGNKGIWSRDVRYKSNLPLTEINKIL 57 (91)
T ss_dssp HHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 555555 569999999999999999998763
No 129
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=91.69 E-value=0.32 Score=30.21 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=22.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.|+|..|+|+.+|+|.++|..+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 799999999999999999998765
No 130
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=91.59 E-value=0.075 Score=32.07 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAA 56 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~ 56 (151)
+..+.|++.|++.+++.+|+.|...|.
T Consensus 16 sq~~lA~~~gis~~~i~~~e~g~~~~~ 42 (69)
T 1r69_A 16 NQAELAQKVGTTQQSIEQLENGKTKRP 42 (69)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCc
Confidence 456789999999999999999987653
No 131
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=91.59 E-value=0.031 Score=33.69 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+++.+|+.|...|
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~~ 45 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSETEP 45 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCCC
Confidence 45678999999999999999997764
No 132
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.59 E-value=0.31 Score=30.97 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=23.4
Q ss_pred HHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 97 VQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 97 k~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+.....+|..|||+.+|+|+++++++.
T Consensus 7 ~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 7 EFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 33444567999999999999999998863
No 133
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=91.56 E-value=0.032 Score=35.38 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCccccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDED 70 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~ 70 (151)
++-+.|.+.|++.+|+.+||.|...|......+.+..++.+
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~ 66 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 66 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 55678999999999999999998765433333333344433
No 134
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=91.52 E-value=0.27 Score=32.41 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
....+|-.+....|+|-.+||+.+|+|+++|.+.
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~ 50 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKA 50 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3444444444478899999999999999988775
No 135
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=91.51 E-value=0.26 Score=38.09 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 139 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kL 139 (151)
..+.+..++++. +.|+|+.++|+.+|+|+++|+++.+=- ..+.+....+
T Consensus 120 ~~E~a~~~~~l~-~~g~t~~~iA~~lG~s~~~V~~~l~l~-~l~~~v~~~l 168 (230)
T 1vz0_A 120 PVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLL-QLPPEALEAL 168 (230)
T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGG-GSCHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH-cCCHHHHHHH
Confidence 345566677777 789999999999999999999986532 2334444333
No 136
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=91.44 E-value=0.27 Score=33.75 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHH-hcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 87 RVPSELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R-~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
.+..++-..+..+- ..-..++.++|+.+||++++|++|-++.
T Consensus 7 ~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred eCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhch
Confidence 34455555554443 4444556699999999999999998764
No 137
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.22 E-value=0.31 Score=31.81 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=23.0
Q ss_pred HHHHHhcC---CcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDK---KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~---glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..++... .+|..+||+.+|+++++|.+.
T Consensus 16 L~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 16 LKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 34445555 699999999999999988875
No 138
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=91.08 E-value=0.036 Score=33.92 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=22.5
Q ss_pred HHHHHHHHcC--CChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAG--ADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g--~~v~t~~k~~~g~~~~ 55 (151)
++.+.|.+.| ++.+++.+||.|...|
T Consensus 23 sq~~lA~~~g~~is~~~i~~~e~g~~~~ 50 (71)
T 2ewt_A 23 SLHGVEEKSQGRWKAVVVGSYERGDRAV 50 (71)
T ss_dssp CHHHHHHHTTTSSCHHHHHHHHHTCSCC
T ss_pred CHHHHHHHHCCcCCHHHHHHHHCCCCCC
Confidence 4567899999 9999999999998764
No 139
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, Pro structure initiative; 1.70A {Shewanella oneidensis} SCOP: a.35.1.6
Probab=91.02 E-value=1 Score=32.35 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTK 138 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~k 138 (151)
-.|+-+|...|+|..++|+..+.|..-+-.||.|+...+.-.-.+
T Consensus 10 ie~~ylr~slgl~~aqv~~l~k~se~dv~aweage~~~~~laqkk 54 (166)
T 2ox6_A 10 IEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKK 54 (166)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HhHHHHHHHcCCCHHHHHHHhccCHHHhhhhhhcCCcCcchHHhh
Confidence 347889999999999999999999999999999997665443333
No 140
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=90.99 E-value=0.04 Score=34.03 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+++.+|+.|...|
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~~ 45 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETEP 45 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 45678999999999999999997765
No 141
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=90.95 E-value=0.15 Score=32.77 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.-+|..|+|+.+|||+.||..||+
T Consensus 4 m~~~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHHHH
T ss_pred CcccHHHHHHHHCcCHHHHHHHHH
Confidence 347899999999999999999997
No 142
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=90.95 E-value=0.04 Score=34.18 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+....|++.|++.+++.+|+.|...|
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~~ 50 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDRNI 50 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSCC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCC
Confidence 45678999999999999999998764
No 143
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=90.85 E-value=0.26 Score=31.99 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
+...+..++....++..|||+.+++|..||.+-
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 445566677788899999999999999998764
No 144
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=90.84 E-value=0.39 Score=32.89 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHH-hCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQL-INEKPQVIQEYESGKAIP------NQQILTKLERALGVKL 147 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~-lgis~s~Is~~E~G~~~p------~~~~l~kLa~~Lgv~l 147 (151)
...+...|++..+..+++|.-||+. +|.++.+++.+.+-...| -.+.+.++-..|..+-
T Consensus 19 Tk~I~~~Ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~Gre~f~RM~nWL~l~e 84 (101)
T 1wiz_A 19 SPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQNFLNLPE 84 (101)
T ss_dssp CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCCH
Confidence 4678889999999999999999996 799999999999866422 2456777777776654
No 145
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=90.81 E-value=0.043 Score=33.92 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+|+.+|+.|...|
T Consensus 25 s~~~lA~~~gis~~~i~~~e~g~~~~ 50 (76)
T 3bs3_A 25 TNRWLAEQMGKSENTISRWCSNKSQP 50 (76)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 45679999999999999999998765
No 146
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=90.70 E-value=0.037 Score=35.08 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++.+.|++.|++.+++.+||.|...|
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~~~ 54 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAERRL 54 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCCC
Confidence 45678999999999999999998754
No 147
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.57 E-value=0.94 Score=28.06 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=35.6
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALGVKL 147 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lgv~l 147 (151)
..|+|.+|+|+.+|+|..+|..+..- -...+...+..++..+|+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~~g~~~ 78 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFGP 78 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 68999999999999999999876531 24456677777877777653
No 148
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=90.56 E-value=0.45 Score=30.73 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.|+|..++|+.+|+|.++|..+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 799999999999999999998764
No 149
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=90.51 E-value=0.36 Score=33.60 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHH-HhCCCHHHHHHHHcCCCCC---C---HHHHHHHHHHhCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQ-LINEKPQVIQEYESGKAIP---N---QQILTKLERALGV 145 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~-~lgis~s~Is~~E~G~~~p---~---~~~l~kLa~~Lgv 145 (151)
...+..+|+++....+++|+-||+ .+|.++.+|+.+.+--... + .+...++-..|..
T Consensus 29 Tk~I~~~ikewL~~~~isQ~~FA~~ILgrsQgtlSdlL~~PkpW~~L~~~GRe~yiRM~nWL~l 92 (111)
T 1wh8_A 29 TYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLND 92 (111)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHhccCcCcHHHHHcCCCCHHHHhHhhhHHHHHHHHHhcC
Confidence 478999999999999999999999 5899999999998854322 2 3445555555543
No 150
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=90.50 E-value=0.73 Score=28.08 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=29.5
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 144 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lg 144 (151)
..|+|..|+|+.+|+|+++|..+-.. -...+...+...+...|
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~~~~~g 70 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 67999999999999999999886542 12334444444444444
No 151
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=90.38 E-value=0.27 Score=29.18 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=30.0
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 144 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lg 144 (151)
...|+|.+|+|+.+|+|.++|..+-.. -...+...+..++...|
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~~~~~~g 57 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMR 57 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSC
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence 356999999999999999999876442 12334444555554444
No 152
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=90.28 E-value=0.056 Score=34.92 Aligned_cols=39 Identities=10% Similarity=-0.017 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~ 68 (151)
++-+.|.+.|++.+++.+||+|...|....+.+....|+
T Consensus 29 tq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 67 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACE 67 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 556789999999999999999987654333333333333
No 153
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=90.12 E-value=0.048 Score=35.71 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++.+.|++.|++.+|+.+|+.|...|
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~p 49 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAIP 49 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCCC
Confidence 45678999999999999999998765
No 154
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=90.12 E-value=0.052 Score=34.65 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCC-cc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTN-KA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~-~~ 55 (151)
++-+.|++.|++.+++.+||.|.. .|
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p 55 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATP 55 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCC
Confidence 456899999999999999999986 54
No 155
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.11 E-value=0.54 Score=30.49 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARN-DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~-~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+.. ..++|+.|||+.+|+++++++++
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~ 56 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENS 56 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHH
Confidence 33444433 77899999999999999999986
No 156
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=90.06 E-value=0.043 Score=34.46 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++.+.|.+.|++.+|+.+|+.|...|
T Consensus 17 sq~~lA~~~gis~~~i~~~e~g~~~p 42 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQLCNIEQSETAP 42 (77)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTCCSCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 45678999999999999999997654
No 157
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.01 E-value=0.6 Score=32.90 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+.....+|..+||+.+|+|++++++.
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~ 41 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSR 41 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 34566666677899999999999999998875
No 158
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=89.85 E-value=0.13 Score=31.07 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+++.+|+.|...|
T Consensus 18 sq~~lA~~~gis~~~i~~~e~g~~~~ 43 (71)
T 1zug_A 18 TQTELATKAGVKQQSIQLIEAGVTKR 43 (71)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCCSS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 45678999999999999999998764
No 159
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=89.84 E-value=0.51 Score=28.83 Aligned_cols=34 Identities=12% Similarity=-0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
...|..+....+.++.+.|+.+||+++++.+..+
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4556777778888999999999999999988653
No 160
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=89.81 E-value=0.25 Score=32.99 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 104 KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
|.|..++|..+||++++|.+|-+
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 37999999999999999999954
No 161
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=89.81 E-value=0.27 Score=33.35 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=21.7
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
++|..|+|+.+|||+.||..||+-
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC
Confidence 478999999999999999999863
No 162
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=89.76 E-value=0.05 Score=37.47 Aligned_cols=44 Identities=5% Similarity=-0.119 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccch
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTE 72 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~~ 72 (151)
=+.-+.|.+.|++.+++.+||+|...|..+...+.+..++.+.+
T Consensus 26 lsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 26 LTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSH
T ss_pred CCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 35677999999999999999999876654444444455554433
No 163
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=89.69 E-value=0.45 Score=32.12 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHH-hCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQL-INEKPQVIQEYESGKAIP------NQQILTKLERALGVKLR 148 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~-lgis~s~Is~~E~G~~~p------~~~~l~kLa~~Lgv~l~ 148 (151)
...+...|++.....++||.-||+. +|.++.+++.+.+-...| -.+.+.++-..|..+-+
T Consensus 9 T~~I~~~ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lL~~Pkdpw~~l~~Gre~f~rM~nWL~l~e~ 75 (93)
T 2o4a_A 9 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEA 75 (93)
T ss_dssp CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhhHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4568889999999999999999996 799999999999865523 14557777777776543
No 164
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=89.63 E-value=0.14 Score=31.76 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=24.2
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKAIPN 132 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~~p~ 132 (151)
=++..|+|+.+|+|++||.+|.+....|.
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~fP~ 38 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 37899999999999999999987554453
No 165
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=89.60 E-value=0.064 Score=37.71 Aligned_cols=81 Identities=7% Similarity=0.004 Sum_probs=37.1
Q ss_pred HHHHHHHHcC-----CChhhHHhhhcCCC-ccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcC
Q 031871 30 KVVNAARRAG-----ADIETVRKSHAGTN-KAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDK 103 (151)
Q Consensus 30 ~~~~~a~r~g-----~~v~t~~k~~~g~~-~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~ 103 (151)
++.+.|...| ++.+++..||+|.. .|....+.+.+.-++.+.+.|-. ......+...|..++..+
T Consensus 26 T~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~~---------~~~~~~~~~~l~ll~~lr 96 (123)
T 3qwg_A 26 TSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTD---------DEYYEKLDKELQWLCTMR 96 (123)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHHC---------HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHcC---------CccHhHHHHHHHHHHHHH
Confidence 3455566665 99999999999986 55444444555555555443332 333334444444444444
Q ss_pred CcCHHHHHHH-hCCCHH
Q 031871 104 KLTQSQLAQL-INEKPQ 119 (151)
Q Consensus 104 glTQ~eLA~~-lgis~s 119 (151)
.-....||.+ .|+|+.
T Consensus 97 ~~~v~~la~r~~~Ls~e 113 (123)
T 3qwg_A 97 DDGVRRIAQRAHGLPSA 113 (123)
T ss_dssp -----------------
T ss_pred hhhHHHHHHHhcCCCHH
Confidence 3333444443 344443
No 166
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=89.59 E-value=0.058 Score=34.80 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAA 56 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~ 56 (151)
++.+.|.+.|++.+|+.+|+.|...|.
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~~~~ 58 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGINALN 58 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 456789999999999999999987653
No 167
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=89.51 E-value=0.76 Score=29.36 Aligned_cols=43 Identities=5% Similarity=-0.011 Sum_probs=29.9
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 144 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lg 144 (151)
..|+|.+|+|+.+|+|.++|..+... -...+...+..++...|
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 80 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 80 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 68999999999999999999876431 12334444555554444
No 168
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=89.38 E-value=0.055 Score=34.10 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++.+.|++.|++.+++.+|+.|...|
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~~ 50 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFERRL 50 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 45679999999999999999998764
No 169
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=89.31 E-value=0.066 Score=35.82 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCCccCCCCccccccccccc
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDED 70 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~ 70 (151)
=++-+.|.+.|++.+++.+||.|...|......+.+..|+.+
T Consensus 42 ltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~ 83 (99)
T 3g5g_A 42 MTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 83 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 355678999999999999999998765433333333444433
No 170
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=89.09 E-value=0.059 Score=33.45 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCC-cc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTN-KA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~-~~ 55 (151)
+....|++.|++.+|+.+|+.|.. .|
T Consensus 22 sq~~lA~~~gis~~~i~~~e~g~~~~~ 48 (78)
T 3b7h_A 22 TINRVATLAGLNQSTVNAMFEGRSKRP 48 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHCTTCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 456789999999999999999987 54
No 171
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.08 E-value=0.46 Score=29.46 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=20.5
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+|..|||+.+|+++++|.+.-
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHH
Confidence 46999999999999999998763
No 172
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=89.00 E-value=0.082 Score=33.39 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+|+.+|+.|...|
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~p 38 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRVP 38 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 56789999999999999999997765
No 173
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=88.82 E-value=0.3 Score=35.39 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHHHHhcCCcCHHHHHHH-hCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCC
Q 031871 86 DRVPSELKKAIVQARNDKKLTQSQLAQL-INEKPQVIQEYESGKAIP------NQQILTKLERALGVK 146 (151)
Q Consensus 86 ~~~~~~~~~~Lk~~R~~~glTQ~eLA~~-lgis~s~Is~~E~G~~~p------~~~~l~kLa~~Lgv~ 146 (151)
..+..++.+.|++..+..+++|+-||+. +|.++.+++.+.+-...| -.+.+.++-..|..+
T Consensus 20 ~~vt~~I~~~Ik~eLk~~~IsQ~~FA~~VL~rsQGtLS~LLr~PkdPW~~LksGRE~fiRM~NWL~Lp 87 (141)
T 1yse_A 20 TEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLP 87 (141)
T ss_dssp CSCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSC
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHcCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 5667899999999999999999999996 699999999998855421 234555555555544
No 174
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=88.75 E-value=0.49 Score=30.44 Aligned_cols=29 Identities=3% Similarity=0.087 Sum_probs=23.5
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..+....++|+.|||+.+|++++++++.
T Consensus 30 l~~l~~~~~~s~~ela~~l~is~~tvs~~ 58 (99)
T 3cuo_A 30 LCMLSGSPGTSAGELTRITGLSASATSQH 58 (99)
T ss_dssp HHHHTTCCSEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHCcCHHHHHHH
Confidence 44444445799999999999999999886
No 175
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=88.73 E-value=2.4 Score=29.94 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHH-HhcCCcCHH
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQA-RNDKKLTQS 108 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~-R~~~glTQ~ 108 (151)
+.-..|+..|++..|+.+|-.-.... ..+... ..-.. .+ ..+...+-..|.++ +....+|..
T Consensus 43 s~~~IA~~lgis~~TV~rwl~r~~~~--G~~~~~-~r~gr-----~~---------~~~~~~~~~~I~~~~~~~~~~s~~ 105 (159)
T 2k27_A 43 RPCDISRQLRVSHGCVSKILGRYYET--GSIRPG-VIGGS-----KP---------KVATPKVVEKIGDYKRQNPTMFAW 105 (159)
T ss_dssp CHHHHHHHHTCCSHHHHHHHCCSSTT--SCCCCC-CCCCC-----CC---------CCCCTTHHHHHHHHHHHCSSSCHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhc--CCccCC-CCCCC-----CC---------CCCCHHHHHHHHHHHHHCccchHH
Confidence 34567899999999999997643321 000000 00000 00 11112233344444 345679999
Q ss_pred HHHHHh----------CCCHHHHHHHHc
Q 031871 109 QLAQLI----------NEKPQVIQEYES 126 (151)
Q Consensus 109 eLA~~l----------gis~s~Is~~E~ 126 (151)
+++..+ .+|.++|.+|..
T Consensus 106 ~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 106 EIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp HHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 999887 478899888864
No 176
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=88.69 E-value=0.1 Score=34.04 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRK 66 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~k 66 (151)
+..+.|.+.|++.+|+.+|+.|...|......+.+..
T Consensus 19 tq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~ 55 (99)
T 2l49_A 19 SRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQT 55 (99)
T ss_dssp CHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876544333344444
No 177
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=88.63 E-value=0.061 Score=36.32 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDT 71 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~ 71 (151)
++-..|.+.|++.+|+.+|+.|...|..+...+.+..++.+.
T Consensus 24 sq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~ 65 (114)
T 3op9_A 24 KNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSI 65 (114)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCH
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCH
Confidence 456789999999999999999987764443344444444443
No 178
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=88.59 E-value=0.99 Score=29.57 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..-.+.|..+. .|+|.+|+|+.+|+|..||..+-.
T Consensus 32 ~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 32 PRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344444443 899999999999999999987644
No 179
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.52 E-value=0.56 Score=32.34 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCC--cCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKK--LTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~g--lTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....+ +|+.+||+.+|+++++|++.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~ 62 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRS 62 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 445566666666 99999999999999999886
No 180
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=88.46 E-value=0.62 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.4
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..|+|.+|+|+.+|+|..+|..+..
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 7899999999999999999987643
No 181
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=88.44 E-value=0.4 Score=31.66 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcC-CCccCCCCcccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAG-TNKAASSSTSLNTRKLDE 69 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g-~~~~~~~~~~~~~~kl~~ 69 (151)
+....|++.|++.+|+.+|+.| ...|......+.+..++.
T Consensus 16 tq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v 56 (111)
T 1b0n_A 16 SLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDV 56 (111)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCc
Confidence 4567999999999999999999 666543333333333333
No 182
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=88.17 E-value=0.086 Score=34.69 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCChhh----HHhhhcCCCccCCCCcccccccccccc
Q 031871 30 KVVNAARRAGADIET----VRKSHAGTNKAASSSTSLNTRKLDEDT 71 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t----~~k~~~g~~~~~~~~~~~~~~kl~~~~ 71 (151)
++-+.|.+.|++.++ +.+||+|...|..+...+.+..++.+.
T Consensus 16 sq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~ 61 (98)
T 3lfp_A 16 SQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPV 61 (98)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCG
T ss_pred CHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCH
Confidence 456789999999999 999999987764433334444444443
No 183
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=88.15 E-value=0.076 Score=36.07 Aligned_cols=41 Identities=20% Similarity=0.036 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccc
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~ 69 (151)
=++.+.|.+.|++.+++.+||.|...|....+.+.+..|+.
T Consensus 35 ltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 75 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGV 75 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 35678999999999999999999876543333333333333
No 184
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=88.13 E-value=0.72 Score=30.10 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
...|.++....+.++.+.|+.+||+++++.+..+
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4556777777888999999999999999987654
No 185
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.11 E-value=0.32 Score=32.31 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...+..++....+|..|||+.+|+|..||.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 44556667778899999999999999998764
No 186
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=88.06 E-value=0.67 Score=31.82 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
+-.++-..|+|+.|+|+.+|+|.++|..+-.
T Consensus 30 vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 30 YIELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp HHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344556899999999999999999998754
No 187
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.71 E-value=1 Score=28.97 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..|..+....++|+.+||+.+|+++++|++.-
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 34445555678999999999999999998863
No 188
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=87.70 E-value=0.4 Score=34.01 Aligned_cols=43 Identities=2% Similarity=0.016 Sum_probs=28.1
Q ss_pred HHHHHHHHcC-----CChhhHHhhhcCCC-ccCCCCcccccccccccch
Q 031871 30 KVVNAARRAG-----ADIETVRKSHAGTN-KAASSSTSLNTRKLDEDTE 72 (151)
Q Consensus 30 ~~~~~a~r~g-----~~v~t~~k~~~g~~-~~~~~~~~~~~~kl~~~~~ 72 (151)
+.-+.|...| ++.+++..||+|.. .|..+.+.+.+.-++.+.+
T Consensus 28 T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~ 76 (135)
T 3r1f_A 28 TSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAA 76 (135)
T ss_dssp CHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTH
T ss_pred CHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHH
Confidence 4555666666 99999999999986 5544444444444444443
No 189
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=87.61 E-value=0.055 Score=34.50 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~ 69 (151)
+..+.|++.|++.+++.+|+.|...|......+.+..++.
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~ 66 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLEL 66 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 4567899999999999999999776543333333334443
No 190
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=87.61 E-value=0.6 Score=31.57 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=21.3
Q ss_pred cCHHHHHHHhCCCHHHHHHHHcC
Q 031871 105 LTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~G 127 (151)
+|..|+|+.+|||+.||..||+-
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~ 25 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNI 25 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHC
Confidence 78999999999999999999873
No 191
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=87.60 E-value=0.083 Score=33.49 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCChhhHHhhhcC-CCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAG-TNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g-~~~~ 55 (151)
++.+.|.+.|++.+++.+||.| ...|
T Consensus 25 tq~elA~~~gis~~~is~~E~G~~~~p 51 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERNLQTNP 51 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 4567899999999999999999 5554
No 192
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=87.59 E-value=0.53 Score=31.40 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCChhhHHhhhc-----CCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHH-hcC
Q 031871 30 KVVNAARRAGADIETVRKSHA-----GTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQAR-NDK 103 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~-----g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R-~~~ 103 (151)
+..+.|++.|++..|+.+|-. |...+.... +....+++ ..+...|..+. +..
T Consensus 35 s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~-g~~~~~l~---------------------~~~~~~i~~~~~~~~ 92 (128)
T 1pdn_C 35 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG-GSKPRIAT---------------------PEIENRIEEYKRSSP 92 (128)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCS-CCCCCSSC---------------------STHHHHHHHTTTTCT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCC-CCCCCcCC---------------------HHHHHHHHHHHHhCc
Confidence 445689999999999998865 322111100 00111221 22233444443 345
Q ss_pred CcCHHHHHHHh---C-------CCHHHHHHHHc
Q 031871 104 KLTQSQLAQLI---N-------EKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~l---g-------is~s~Is~~E~ 126 (151)
.+|..+++..+ | +|.++|.+|..
T Consensus 93 ~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 93 GMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp TCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred chHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 79999999998 7 59999998864
No 193
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=87.57 E-value=0.7 Score=29.99 Aligned_cols=30 Identities=0% Similarity=0.080 Sum_probs=22.9
Q ss_pred HHHHHHhcC-CcCHHHHHHHhCCCHHH-HHHH
Q 031871 95 AIVQARNDK-KLTQSQLAQLINEKPQV-IQEY 124 (151)
Q Consensus 95 ~Lk~~R~~~-glTQ~eLA~~lgis~s~-Is~~ 124 (151)
.|..+.... ++|+.+||+.+|+++++ +++.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~ 51 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGL 51 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHH
Confidence 344444554 79999999999999999 6554
No 194
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=87.52 E-value=0.44 Score=32.62 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=26.9
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 135 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~ 135 (151)
..+|..+||+.+|+|++||.++-+--..-....
T Consensus 38 ~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 38 IESTVNEISALANSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH
T ss_pred HhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHH
Confidence 579999999999999999999987555444433
No 195
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=87.51 E-value=0.94 Score=34.33 Aligned_cols=38 Identities=16% Similarity=0.014 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHh-cCCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 90 SELKKAIVQARN-DKKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 90 ~~~~~~Lk~~R~-~~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
-+.|.....+.. ....+|++||+.+|+|++.|+++.+-
T Consensus 27 yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 27 YERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp HHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555555543 34789999999999999999998763
No 196
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=87.49 E-value=1.2 Score=31.33 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-|..+.....+|..+||+.+|+|++++++.
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 41 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHER 41 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666677899999999999999998874
No 197
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=87.48 E-value=0.86 Score=31.13 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=26.1
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+-.++-..|+|.+|+|+.+|+|.++|...-.
T Consensus 32 ~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 32 NYLELFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34445667899999999999999999987643
No 198
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=87.31 E-value=1.4 Score=30.67 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCChhhHHhhhc-----CCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHH-HhcC
Q 031871 30 KVVNAARRAGADIETVRKSHA-----GTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQA-RNDK 103 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~-----g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~-R~~~ 103 (151)
+....|+..|++..|+.+|-. |...+... .+..-. .+...+...|..+ +...
T Consensus 50 s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r-~gr~~~---------------------~~~~~~~~~I~~~~~~~~ 107 (149)
T 1k78_A 50 RPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI-GGSKPK---------------------VATPKVVEKIAEYKRQNP 107 (149)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCC-CCCCCS---------------------SSCHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCC-CCCCCC---------------------CCCHHHHHHHHHHHHhCc
Confidence 455679999999999998864 32211000 000011 1122333444444 3446
Q ss_pred CcCHHHHHHHh--------C--CCHHHHHHHHcCC
Q 031871 104 KLTQSQLAQLI--------N--EKPQVIQEYESGK 128 (151)
Q Consensus 104 glTQ~eLA~~l--------g--is~s~Is~~E~G~ 128 (151)
.+|..+++..+ | +|.++|.+|....
T Consensus 108 ~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 108 TMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp TCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 79999999988 7 8999999998654
No 199
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=87.05 E-value=0.1 Score=34.44 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCC
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTN 53 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~ 53 (151)
=++.+.|.+.|++.+|+.+|+.|..
T Consensus 38 lTq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 38 MKKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 3567899999999999999999965
No 200
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=87.02 E-value=1.2 Score=32.21 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHh-CCCHHHHHHHHcCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLI-NEKPQVIQEYESGK 128 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~l-gis~s~Is~~E~G~ 128 (151)
...+...|+.+....+++|..||+.+ |+++.+++.+.+.-
T Consensus 6 t~~i~~~i~~~l~~~~i~q~~fa~~ilg~sq~~ls~~l~~p 46 (164)
T 2d5v_A 6 TKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 46 (164)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcCCchhHHHHcCCC
Confidence 46789999999999999999999965 99999999998743
No 201
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=86.91 E-value=1.3 Score=30.31 Aligned_cols=34 Identities=3% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-...|..+...-++|+.+||+.+|++++++++.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~ 74 (148)
T 3nrv_A 41 TEWRIISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3345566666677999999999999999999886
No 202
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=86.89 E-value=0.1 Score=35.29 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~ 69 (151)
++.+.|.+.|++.+++.+||+|...|..+...+.+..|+.
T Consensus 43 sq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v 82 (117)
T 3f52_A 43 TLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGA 82 (117)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCC
Confidence 5567899999999999999999876543333333333333
No 203
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=86.81 E-value=0.083 Score=34.17 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAAS 57 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~ 57 (151)
++.+.|.+.|++.+++.+||.|...|..
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~~p~~ 55 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRAIPNN 55 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCH
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCH
Confidence 4567899999999999999999876533
No 204
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=86.56 E-value=1.4 Score=29.61 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
-...|..+....++|+.+||+.+|++++++++.
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~ 63 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 344456666667899999999999999999876
No 205
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=86.53 E-value=0.095 Score=35.72 Aligned_cols=42 Identities=7% Similarity=-0.034 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCCccCCCCccccccccccc
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDED 70 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~ 70 (151)
=++.+.|.+.|++.+++.+||.|...|..+...+.+..++.+
T Consensus 37 ltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~ 78 (111)
T 3mlf_A 37 LTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVK 78 (111)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 356779999999999999999998765443333444444443
No 206
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=86.53 E-value=0.32 Score=32.85 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=24.7
Q ss_pred ccCHHHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 26 KKDEKVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 26 ~~~~~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
.++=++.+.|.+.|++.+|+.+||.|+..|
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~G~~~~ 76 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEKGKVQL 76 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTCCBH
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHCCCCCH
Confidence 344567789999999999999999997543
No 207
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=86.49 E-value=1.5 Score=30.71 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-|..+.....+|..+||+.+|+|++++++.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 39 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTER 39 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666677899999999999999998875
No 208
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=86.39 E-value=0.34 Score=33.51 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++.++|.+.|++..|+.+||.|...|
T Consensus 86 sq~~la~~~g~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 86 TQKEASEIFGGGVNAFSRYEKGNAQP 111 (133)
T ss_dssp CHHHHHHHHCSCTTHHHHHHHTSSCC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCC
Confidence 55678999999999999999998765
No 209
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.35 E-value=1.4 Score=30.96 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+.....+|..+||+.+|+|++++.+.
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 43 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARR 43 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666777899999999999999998875
No 210
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.32 E-value=0.99 Score=30.89 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..-...|..+...-++|+.+||+.+|++++++++.
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 71 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRK 71 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHH
Confidence 33345566666677999999999999999988876
No 211
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=86.07 E-value=1.3 Score=31.87 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.7
Q ss_pred CcCHHHHHHHhCCCHHHHHHHH
Q 031871 104 KLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E 125 (151)
.+||.+||..+|+++.+|++.-
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l 167 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVI 167 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH
Confidence 3899999999999999999863
No 212
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.79 E-value=1.7 Score=30.59 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+.....+|..+||+.+|+|++++.+.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 42 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVR 42 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4566677777899999999999999998875
No 213
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=85.77 E-value=0.67 Score=30.40 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
...|..+....+.++.+.|+.+|||++++.+..
T Consensus 53 ~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rkl 85 (91)
T 1ntc_A 53 RTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHH
Confidence 455667777788899999999999999998754
No 214
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=85.66 E-value=1.4 Score=30.34 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
+.-...|. +-..|+|..|+|+.+|+|.++|.....
T Consensus 112 ~~~r~v~~--~~~~g~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 112 KFEKEVLT--YLIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHHHHHHH--HHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 33334444 467899999999999999999988754
No 215
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=85.43 E-value=1.7 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
-..|.+--....++..+||+.+|+|+.++++.-+..
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444433447999999999999999999986644
No 216
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=85.40 E-value=0.68 Score=31.58 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=26.4
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAIPN 132 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~ 132 (151)
..-..+|..+||+.+|+|+++|.++-+--..-.
T Consensus 31 ~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~g 63 (107)
T 3iwf_A 31 HKVVNMTSQEIANQLETSSTSIIRLSKKVTPGG 63 (107)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTH
T ss_pred HHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCC
Confidence 344689999999999999999999976444333
No 217
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.39 E-value=1.5 Score=30.66 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=24.9
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.|..+.....+|..+||+.+|+|++++++.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~ 37 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYR 37 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 355566666799999999999999998875
No 218
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.38 E-value=1.3 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=25.5
Q ss_pred HHHHHH-HhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQA-RNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~-R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+ ....++|+.+||+.+|++++++++.
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~ 72 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARL 72 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHH
Confidence 345555 5667899999999999999999876
No 219
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=85.35 E-value=1.4 Score=26.20 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=23.7
Q ss_pred HHhcCCcCHHHHHHHh-----CCCHHHHHHHHc
Q 031871 99 ARNDKKLTQSQLAQLI-----NEKPQVIQEYES 126 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~l-----gis~s~Is~~E~ 126 (151)
+.....+|..||++.+ ++|.+||.+..+
T Consensus 14 l~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 14 ITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3445679999999999 999999998755
No 220
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=85.35 E-value=0.72 Score=29.61 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..+....++|+.+||+.+|++++++++.
T Consensus 22 L~~L~~~~~~~~~ela~~l~is~~tvs~~ 50 (100)
T 1ub9_A 22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhcCCcCHHHHHHHHCcCHHHHHHH
Confidence 34444456799999999999999999875
No 221
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=85.35 E-value=1.8 Score=30.75 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+.....+|..+||+.+|+|++++++.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 44 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRR 44 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666677899999999999999998875
No 222
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=85.34 E-value=0.49 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
+.+-..|..+......|-.++|+++|++.+.|+++
T Consensus 15 ~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~ 49 (75)
T 1sfu_A 15 SLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQ 49 (75)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHH
Confidence 33444555556666689999999999999998876
No 223
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=85.29 E-value=1.6 Score=29.53 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~ 65 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRH 65 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34455555566899999999999999999876
No 224
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.20 E-value=1.6 Score=29.75 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=26.3
Q ss_pred HHHHHHHHh-cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARN-DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~-~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+.. ..++|+.+||+.+|++++++++.
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~ 70 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAAL 70 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHH
Confidence 345566666 67899999999999999998876
No 225
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=85.17 E-value=1.4 Score=31.56 Aligned_cols=22 Identities=5% Similarity=0.139 Sum_probs=19.7
Q ss_pred CcCHHHHHHHhCCCHHHHHHHH
Q 031871 104 KLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E 125 (151)
.+||.+||..+|+++.+|++.-
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l 160 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVL 160 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3799999999999999999873
No 226
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.17 E-value=1.8 Score=29.16 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcC--CcCHHHHHHHhCCCHHHHHHH
Q 031871 91 ELKKAIVQARNDK--KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 91 ~~~~~Lk~~R~~~--glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-...|..+.... ++|+.+||+.+|++++++++.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~ 70 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVL 70 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHH
Confidence 3344555665555 799999999999999998876
No 227
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=85.14 E-value=0.56 Score=30.78 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++-+.|.+.|++.+|+.+||.|...|
T Consensus 45 sq~elA~~lgvs~~~is~~E~G~~~p 70 (99)
T 2ppx_A 45 TQEEFSARYHIPLGTLRDWEQGRSEP 70 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCCC
Confidence 55779999999999999999998764
No 228
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=85.09 E-value=1.6 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+.....+|..+||+.+|+|++++.+.
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~r 61 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHER 61 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 34566666677899999999999999998774
No 229
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=85.05 E-value=1.4 Score=30.41 Aligned_cols=35 Identities=3% Similarity=0.066 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..-...|..+....++|+.+||+.+|+++++++++
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~ 75 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPM 75 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 33445566666678999999999999999999986
No 230
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=85.04 E-value=1.4 Score=30.00 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHHHHHHHHH-hcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R-~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
......|..+. ...++|+.+||+.+|++++++++.
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~ 61 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMS 61 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHH
Confidence 33344444443 356899999999999999999886
No 231
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=85.01 E-value=1.5 Score=29.86 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
-...|..+....++|+.+||+.+|+++++++++
T Consensus 39 ~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~ 71 (143)
T 3oop_A 39 QWSVLEGIEANEPISQKEIALWTKKDTPTVNRI 71 (143)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHH
Confidence 344455666668899999999999999999886
No 232
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=84.92 E-value=1.5 Score=29.63 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcC--CcCHHHHHHHhCCCHHHHHHH
Q 031871 91 ELKKAIVQARNDK--KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 91 ~~~~~Lk~~R~~~--glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-...|..+.... ++|+.+||+.+|++++++++.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~ 67 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNL 67 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHH
Confidence 3344555565554 899999999999999999986
No 233
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=84.90 E-value=1.1 Score=31.31 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+....++|+.+||+.+|+++++++++
T Consensus 54 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 84 (159)
T 3s2w_A 54 PFLMRLYREDGINQESLSDYLKIDKGTTARA 84 (159)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3455555667899999999999999999986
No 234
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=84.89 E-value=1.6 Score=29.81 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..-...|..+...-++|+.+||+.+|+++++++++
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 65 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGV 65 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 33445566666667899999999999999999886
No 235
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=84.84 E-value=1.5 Score=30.11 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=21.7
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
....++|+.+||+.+|+++++|++.
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~ 42 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKM 42 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHH
Confidence 3456899999999999999998875
No 236
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=84.65 E-value=1.4 Score=34.27 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..-...|..+....++|+.+||+.+|++++++++.
T Consensus 152 ~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~ 186 (244)
T 2wte_A 152 REEMKLLNVLYETKGTGITELAKMLDKSEKTLINK 186 (244)
T ss_dssp HHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 33444556656667899999999999999999987
No 237
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=84.63 E-value=1.4 Score=29.60 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.++|..|+|+.+|+|..+|..++.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 689999999999999999999876
No 238
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=84.57 E-value=0.34 Score=33.89 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=31.5
Q ss_pred CHHHHHHHHHcCCChhhHHhhhcCCCccCCCC------cccccccccccch
Q 031871 28 DEKVVNAARRAGADIETVRKSHAGTNKAASSS------TSLNTRKLDEDTE 72 (151)
Q Consensus 28 ~~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~------~~~~~~kl~~~~~ 72 (151)
+=++-+.|.+.|++.+++.+||+|...|..+. ..+.+..|+.+.+
T Consensus 16 gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 16 GMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHH
Confidence 34567899999999999999999987654432 3344455554443
No 239
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=84.56 E-value=0.58 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+|+.+|+.|...|
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~~~ 48 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKAAL 48 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSSCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 45679999999999999999998764
No 240
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=84.53 E-value=1.1 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.4
Q ss_pred cCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 105 LTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
||..|+|+.+|||+.||..||+-.
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~G 24 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKG 24 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCC
Confidence 578999999999999999998743
No 241
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=84.46 E-value=1.7 Score=31.67 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.1
Q ss_pred cCHHHHHHHhCCCHHHHHHHHc
Q 031871 105 LTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~ 126 (151)
+||++||..+|+++.+|++.-+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~ 209 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLK 209 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHH
Confidence 7999999999999999998754
No 242
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=84.39 E-value=1.7 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~ 72 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRLTAMDAATIKGV 72 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 44455555556899999999999999999886
No 243
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=84.35 E-value=1.2 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..+.....+|..+||+.+|++++++++.
T Consensus 48 L~~L~~~~~~s~~eLa~~l~is~stvs~~ 76 (122)
T 1u2w_A 48 TYALCQDEELCVCDIANILGVTIANASHH 76 (122)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHCcCHHHHHHH
Confidence 34444467799999999999999999986
No 244
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=84.22 E-value=1.2 Score=31.94 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=23.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
..+|..|+|+.+|||.+||..||+-.
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~G 28 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKIN 28 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHCC
Confidence 35899999999999999999999743
No 245
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=84.14 E-value=2 Score=27.64 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhc---CCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARND---KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~---~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..+-+.|+....+ .-.|..|||+.+|+|.++|.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHH
Confidence 3444455544333 4578999999999999988765
No 246
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=84.14 E-value=2 Score=28.88 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHcCCChhhHHhhhc-CCCccCC-CCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHHH
Q 031871 32 VNAARRAGADIETVRKSHA-GTNKAAS-SSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQSQ 109 (151)
Q Consensus 32 ~~~a~r~g~~v~t~~k~~~-g~~~~~~-~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~e 109 (151)
-+.|+..|+++.|++.|+. |--.|.. +..+ -+.-+. + ....-..|+.+| ..|+|..+
T Consensus 5 ~e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~g--~R~Y~~--~----------------dl~~l~~I~~lr-~~G~sl~~ 63 (108)
T 2vz4_A 5 GQVAGFAGVTVRTLHHYDDIGLLVPSERSHAG--HRRYSD--A----------------DLDRLQQILFYR-ELGFPLDE 63 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTSSCCSEECSSC--CEEBCH--H----------------HHHHHHHHHHHH-HTTCCHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCC--CeecCH--H----------------HHHHHHHHHHHH-HCCCCHHH
Confidence 4689999999999999976 4333321 1000 011111 1 112234455564 46999999
Q ss_pred HHHHhCCC
Q 031871 110 LAQLINEK 117 (151)
Q Consensus 110 LA~~lgis 117 (151)
++..+..+
T Consensus 64 I~~~l~~~ 71 (108)
T 2vz4_A 64 VAALLDDP 71 (108)
T ss_dssp HHHHHTC-
T ss_pred HHHHHhCC
Confidence 99988653
No 247
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=84.13 E-value=1.3 Score=32.52 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+-.++-..|+|.+|+|+.+|+|.++|..+..
T Consensus 194 ~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34445557899999999999999999998764
No 248
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=84.12 E-value=2.2 Score=29.68 Aligned_cols=32 Identities=6% Similarity=-0.061 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|+++++|++.
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~ 83 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRA 83 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34455565667899999999999999998876
No 249
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=84.09 E-value=0.97 Score=29.38 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=19.0
Q ss_pred cCHHHHHHHhCCCHHHHHHH
Q 031871 105 LTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~ 124 (151)
+|+.+||+.+|+++++++++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~ 50 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLI 50 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHH
Confidence 99999999999999998886
No 250
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=84.01 E-value=1.5 Score=30.28 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=23.8
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..+.....+|..+||+.+|+|++++++.
T Consensus 10 l~~L~~~~~~~~~ela~~lg~s~~tv~~~ 38 (141)
T 1i1g_A 10 LEILEKDARTPFTEIAKKLGISETAVRKR 38 (141)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 44555566799999999999999998874
No 251
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.00 E-value=1.5 Score=30.00 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.1
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...++|+.+||+.+|+++++|++.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~ 51 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEE 51 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCcCHHHHHHHhCCChHHHHHH
Confidence 356799999999999999998875
No 252
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=83.78 E-value=1.6 Score=31.19 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.5
Q ss_pred HHHHHHHcCCChhhHHhhhcC
Q 031871 31 VVNAARRAGADIETVRKSHAG 51 (151)
Q Consensus 31 ~~~~a~r~g~~v~t~~k~~~g 51 (151)
.-+.|++.|+++.|++-|+.-
T Consensus 7 I~evA~~~Gvs~~tLR~ye~~ 27 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDKI 27 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 456899999999999999974
No 253
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=83.61 E-value=1.3 Score=30.10 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+...-++|+.+||+.+|++++++++.
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~ 63 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARA 63 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCcCcCHHHHHHHHCCCHhHHHHH
Confidence 3355555566899999999999999999886
No 254
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=83.53 E-value=0.82 Score=32.89 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=20.4
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 104 KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+||.+||..+|+++.+|++.-+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~ 186 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLK 186 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHH
Confidence 48999999999999999998743
No 255
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=83.45 E-value=2.2 Score=30.95 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+.....+|..+||+.+|+|++++.+.
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~ 51 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHFR 51 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666677899999999999999998875
No 256
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=83.44 E-value=2.3 Score=29.03 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~ 76 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYLACSTTTDL 76 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHH
Confidence 34455555556899999999999999999886
No 257
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=83.33 E-value=1.8 Score=29.79 Aligned_cols=32 Identities=6% Similarity=-0.049 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|+++++++++
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 75 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAAN 75 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34455565667899999999999999998876
No 258
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.31 E-value=2.3 Score=29.33 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 91 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 91 ~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-...|..+....++|+.+||+.+|+++++++++
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~ 81 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYLDSATLTPL 81 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHH
Confidence 3344556666667899999999999999998876
No 259
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=83.28 E-value=2.1 Score=28.79 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHHHcCCChhhHHhhhc
Q 031871 32 VNAARRAGADIETVRKSHA 50 (151)
Q Consensus 32 ~~~a~r~g~~v~t~~k~~~ 50 (151)
-+.|+..|+++.|++.|+.
T Consensus 6 ~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 6 KQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999976
No 260
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=83.18 E-value=0.88 Score=32.47 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.5
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 104 KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+|..|+|+.+|||+.||..||.
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999999987
No 261
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=83.05 E-value=2.2 Score=28.88 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~ 67 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGL 67 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHH
Confidence 33445555566899999999999999999876
No 262
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=83.01 E-value=2 Score=29.44 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
-...|..+...-++|+.+||+.+|++++++++.
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~ 74 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQMKRQYISRI 74 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 344455565666899999999999999998876
No 263
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=82.94 E-value=0.91 Score=32.71 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.5
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 104 KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+||.+||..+|+++.+|++.-+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~ 189 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILK 189 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHHH
Confidence 47999999999999999998753
No 264
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=82.93 E-value=1.7 Score=28.76 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=20.7
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..++|..+||+.+|+++++|++.
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~ 59 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQ 59 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHH
Confidence 46789999999999999999885
No 265
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.86 E-value=2.3 Score=28.87 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+. ..++|+.+||+.+|++++++++.
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~ 70 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRYFVTQSAITAS 70 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCchhHHHH
Confidence 44455566 77899999999999999998876
No 266
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=82.81 E-value=1.7 Score=31.09 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+-.++-..|+|.+|+|+.+|+|.++|.....
T Consensus 147 ~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 147 MAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34445667899999999999999999988754
No 267
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=82.78 E-value=2.7 Score=28.56 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+...- +|+.+||+.+|++++++++.
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~ 71 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKA 71 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHH
Confidence 33455555444 99999999999999999876
No 268
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=82.70 E-value=0.74 Score=29.83 Aligned_cols=43 Identities=7% Similarity=0.027 Sum_probs=29.5
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 144 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lg 144 (151)
..|+|.+|+|+.+|+|.++|..+-.. -...+...+..++...|
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 88 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHN 88 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence 57999999999999999999876431 12233444555555444
No 269
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=82.70 E-value=2.1 Score=31.43 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHHHHHhc-CCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARND-KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~-~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-|..++.. ..+|..+||+.+|+|++||.+.
T Consensus 25 ~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rd 56 (187)
T 1j5y_A 25 SIVRILERSKEPVSGAQLAEELSVSRQVIVQD 56 (187)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHH
Confidence 334445544 3499999999999999999874
No 270
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=82.68 E-value=1.7 Score=28.16 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.8
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...+|..|||+.+|+|+++|++.
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~ 63 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHH
Confidence 46799999999999999999985
No 271
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.67 E-value=1.7 Score=29.30 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 39 ~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~ 70 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLANQACILRPSMTGV 70 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHH
Confidence 34455555566899999999999999998876
No 272
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=82.63 E-value=0.25 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCCccC
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTNKAA 56 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~~~~ 56 (151)
-++.+.|++.|++.+++.+||.|...|.
T Consensus 50 lsq~elA~~~gis~~~is~~E~G~~~p~ 77 (107)
T 2jvl_A 50 MTQAELGKEIGETAATVASYERGTATPD 77 (107)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTTCSCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 3567799999999999999999987653
No 273
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=82.57 E-value=1.5 Score=32.11 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.3
Q ss_pred CcCHHHHHHHhCCCHHHHHHH
Q 031871 104 KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~ 124 (151)
.+||.+||..+|+++.+|++.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~ 183 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTA 183 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHH
Confidence 389999999999999999976
No 274
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=82.51 E-value=2 Score=28.77 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.5
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..+.. ..+|+.++|+.+|+++++|++.
T Consensus 38 l~~L~~-~~~s~~ela~~l~is~stvsr~ 65 (119)
T 2lkp_A 38 LTQLRN-GPLPVTDLAEAIGMEQSAVSHQ 65 (119)
T ss_dssp HHHHHH-CCCCHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHCcCHHHHHHH
Confidence 333433 5789999999999999999885
No 275
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=82.50 E-value=1.8 Score=29.02 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
...|..+....+..+.+.|+.+||+++++.+..+
T Consensus 60 r~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 60 QPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4456677777888999999999999999987643
No 276
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=82.41 E-value=1.8 Score=31.35 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.4
Q ss_pred CcCHHHHHHHhCCCHHHHHHHH
Q 031871 104 KLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E 125 (151)
.+||.+||..+|+++.+++++-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l 190 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRML 190 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 6899999999999999999874
No 277
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.40 E-value=1.8 Score=35.27 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|+.+|....+|..|||+.+|+|++||+++
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~ 50 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 50 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHH
Confidence 44577888888999999999999999999986
No 278
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=82.39 E-value=1.6 Score=30.68 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..-...|..+...-++|+.+||+.+|+++++++++
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 80 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKI 80 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 33445566666677999999999999999998876
No 279
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=82.39 E-value=2.2 Score=29.49 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
-...|..+....++|+.+||+.+|++++++++.
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~ 77 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKLSLMEQSRMTRI 77 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHH
Confidence 344556666667899999999999999998876
No 280
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=82.28 E-value=0.21 Score=35.62 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAAS 57 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~ 57 (151)
++-+.|.+.|++.+++.+||.|...|..
T Consensus 83 Tq~elA~~lGis~s~is~~E~G~~~ps~ 110 (141)
T 3kxa_A 83 TQSELATAAGLPQPYLSRIENSKQSLQD 110 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHTCSCCCH
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCH
Confidence 5567999999999999999999876533
No 281
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=82.27 E-value=2.2 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-|..+.....+|..+||+.+|+|++++.+-
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~r 37 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRR 37 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3466777778899999999999999988764
No 282
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=82.23 E-value=3.3 Score=27.16 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
..+|..+||+.+|+|++++++.-+..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56999999999999999999987643
No 283
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=82.15 E-value=1.4 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=22.9
Q ss_pred HHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 98 QARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 98 ~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
.+....+++..++|+.+|++++++++.-
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3444567999999999999999998753
No 284
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.14 E-value=1.1 Score=30.65 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+++++++++++
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 70 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFLDSGTLTPL 70 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHH
Confidence 44455555567899999999999999999886
No 285
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=82.12 E-value=0.22 Score=32.98 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+..+.|++.|++.+|+.+|++|...|
T Consensus 33 tq~~lA~~~gis~~~is~~e~g~~~~ 58 (104)
T 3cec_A 33 NTANFAEILGVSNQTIQEVINGQRSI 58 (104)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCcCC
Confidence 45678999999999999999998764
No 286
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=82.07 E-value=2.9 Score=28.10 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|+++++++++
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~ 68 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRM 68 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHH
Confidence 34455555567899999999999999999876
No 287
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=81.99 E-value=1.3 Score=30.61 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+ ...++|+.+||+.+|++++++++.
T Consensus 41 ~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~ 71 (151)
T 3kp7_A 41 SHVLNML-SIEALTVGQITEKQGVNKAAVSRR 71 (151)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHH
T ss_pred HHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHH
Confidence 4455666 778999999999999999998876
No 288
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=81.98 E-value=2.6 Score=28.05 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=31.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALGV 145 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lgv 145 (151)
.|+|.+|+|+.+|+|..+|..+-.. -...+...+..++...|+
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gl 94 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 6999999999999999998876542 133455566666666665
No 289
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=81.97 E-value=0.19 Score=32.00 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTN 53 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~ 53 (151)
++.+.|++.|++.+++.+|+.|..
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 567899999999999999999986
No 290
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=81.96 E-value=2.2 Score=29.66 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|+++++++++
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~ 86 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRA 86 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHH
Confidence 44555666667899999999999999999886
No 291
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=81.95 E-value=0.25 Score=36.22 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccc
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDT 71 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~ 71 (151)
-++.+.|++.|++.+++.+||+|...|..+.+.+.+..|+.+.
T Consensus 25 ltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~ 67 (192)
T 1y9q_A 25 LSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 67 (192)
T ss_dssp CCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCH
Confidence 3567899999999999999999987654433334444444443
No 292
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.87 E-value=0.28 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHcCCChhhHHhhhcCCCccCCCCcccccccccccch
Q 031871 26 KKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTE 72 (151)
Q Consensus 26 ~~~~~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~~~ 72 (151)
.++-++.+.|++.|++.+|+.+|+.|...|......+....++.+..
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~~v~~~ 58 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYV 58 (158)
T ss_dssp -----------------------------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 34456678999999999999999999887655555555555555433
No 293
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=81.73 E-value=3.4 Score=27.18 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=22.9
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
..+|..+||+.+|+|+.+++++-+..
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 37999999999999999999986644
No 294
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=81.67 E-value=0.23 Score=33.29 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAA 56 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~ 56 (151)
+....|++.|++.+|+.+|+.|...|.
T Consensus 26 sq~~lA~~~gis~~~is~~e~g~~~~~ 52 (113)
T 2eby_A 26 KINELAELLHVHRNSVSALINNNRKLT 52 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 567899999999999999999987653
No 295
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=81.63 E-value=2.9 Score=25.17 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..|..+.... .++.+.|+.+|||++++.+..+
T Consensus 24 ~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 24 QVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHH
Confidence 3455555555 5899999999999999987654
No 296
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=81.57 E-value=2.4 Score=29.36 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+....++|+.+||+.+|++++++++.
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~ 78 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNV 78 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 3455555556899999999999999999886
No 297
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=81.55 E-value=0.3 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCChhhHHhhhcCCC-ccCCCCccccccccccc
Q 031871 29 EKVVNAARRAGADIETVRKSHAGTN-KAASSSTSLNTRKLDED 70 (151)
Q Consensus 29 ~~~~~~a~r~g~~v~t~~k~~~g~~-~~~~~~~~~~~~kl~~~ 70 (151)
-++.+.|++.|++.+++.+||+|.. .|....+.+.+..|+.+
T Consensus 24 ~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~ 66 (198)
T 2bnm_A 24 MDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTS 66 (198)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCC
Confidence 3567899999999999999999988 66444344444444443
No 298
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=81.48 E-value=2.6 Score=32.39 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHcCCChhhHHhhhc-CCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHHHH
Q 031871 32 VNAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQSQL 110 (151)
Q Consensus 32 ~~~a~r~g~~v~t~~k~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~eL 110 (151)
-+.|++.|+++.|+|.|+. |-..|.... ...-+.-+. + ....-..|+.+|...|+|.+++
T Consensus 4 gevA~~~Gvs~~TLRyYE~~GLl~p~~R~-~~gyR~Y~~--~----------------dl~~L~~I~~lr~~~G~sL~eI 64 (222)
T 2dg6_A 4 ADLSKRSGVSTATIKYYLREGLLPPGRQV-NATTAEYDE--D----------------HLRRLRLVRALIQVGKVPVATA 64 (222)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTSSCCC----------CCH--H----------------HHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCeeC-CCCceeeCH--H----------------HHHHHHHHHHHHHcCCCCHHHH
Confidence 4689999999999999987 333321100 000011111 1 1233455777777779999988
Q ss_pred HHHh
Q 031871 111 AQLI 114 (151)
Q Consensus 111 A~~l 114 (151)
.+.+
T Consensus 65 k~~l 68 (222)
T 2dg6_A 65 REVL 68 (222)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
No 299
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.28 E-value=1.8 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.3
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
....+|..+||+.+|+++++|++.
T Consensus 31 ~~~~~~~~ela~~l~is~~tv~~~ 54 (114)
T 2oqg_A 31 GRADQSASSLATRLPVSRQAIAKH 54 (114)
T ss_dssp HHSCBCHHHHHHHSSSCHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHH
Confidence 456799999999999999999885
No 300
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=81.25 E-value=1.1 Score=32.70 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=20.2
Q ss_pred CCcCHHHHHHHhCCCHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..+||.+||..+|+++.++++.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~ 187 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVL 187 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHH
Confidence 4689999999999999999986
No 301
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=81.20 E-value=2.2 Score=30.88 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHH-HhcCCcCHHHHHHHh-----CCCHHHHHHHHc
Q 031871 94 KAIVQA-RNDKKLTQSQLAQLI-----NEKPQVIQEYES 126 (151)
Q Consensus 94 ~~Lk~~-R~~~glTQ~eLA~~l-----gis~s~Is~~E~ 126 (151)
..|+++ ....-.||.||++.+ ++|++||++.-+
T Consensus 8 ~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 445555 566778999999999 999999999865
No 302
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=81.15 E-value=1.1 Score=32.83 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+||.+||..+|+++.+|++.-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l 196 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVL 196 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHH
Confidence 45899999999999999999973
No 303
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=80.92 E-value=1.1 Score=32.72 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred CCcCHHHHHHHhCCCHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..+||.+||..+|+++.+|++.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~ 197 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKA 197 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHH
Confidence 3589999999999999999986
No 304
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=80.84 E-value=1.9 Score=31.76 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCC--cCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKK--LTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~g--lTQ~eLA~~lgis~s~Is~~ 124 (151)
..+-+.|.+...+.| .|+.|||+.+|++.+++.+.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~ 44 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLH 44 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHH
Confidence 345556666555554 89999999999999888774
No 305
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=80.84 E-value=1.2 Score=32.25 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc-----C-------C-CCCCHHHHHHHHHHh
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES-----G-------K-AIPNQQILTKLERAL 143 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~-----G-------~-~~p~~~~l~kLa~~L 143 (151)
..+||.++|..+|+++.+|++.-+ | + ..++.+.|.+++..|
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIAFGL 215 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhhcc
Confidence 357999999999999999998732 2 1 234667777776543
No 306
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=80.81 E-value=3.2 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.2
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+||.+||..+|+++.+|+++-+
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~ 215 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLG 215 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHH
Confidence 468999999999999999998743
No 307
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.81 E-value=2.1 Score=35.35 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 92 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 92 ~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
....|+.+|....+|..|||+.+|+|++||+++
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~ 73 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKI 73 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHH
Confidence 344577788888999999999999999999986
No 308
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=80.75 E-value=2.6 Score=30.56 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.8
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
.|.++. ..|+|..++|+.+|++++||.++.+.
T Consensus 150 ~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 150 AVLNMW-QQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 344444 36899999999999999999998764
No 309
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=80.67 E-value=2.4 Score=29.97 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+...-++|+.+||+.+|++++++++.
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~ 79 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRM 79 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHH
Confidence 34455555556899999999999999999886
No 310
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.62 E-value=1.4 Score=28.56 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..+|..|||+.+|+|++++++.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~ 56 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQH 56 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 6799999999999999999875
No 311
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=80.62 E-value=3.4 Score=30.65 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCC
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAI 130 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~ 130 (151)
..|.++.. .|+|..++|+.+|++++|+.++.+....
T Consensus 166 ~~i~~~~~-~G~s~~~Ia~~l~is~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 166 HRVVEMLE-EGQAISKIAKEVNITRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHTTCC-
T ss_pred HHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHhcccc
Confidence 34444443 6999999999999999999999876543
No 312
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=80.61 E-value=2 Score=28.69 Aligned_cols=23 Identities=4% Similarity=-0.052 Sum_probs=20.8
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...+|..|||+.+|+++++|++.
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~ 58 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASAN 58 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHH
Confidence 36789999999999999999886
No 313
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.60 E-value=1.5 Score=35.64 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|+.+| ...+|..|||+.+|+|++||+++
T Consensus 26 l~~l~-~~~~sr~~la~~~gls~~tv~~~ 53 (380)
T 2hoe_A 26 LKRIM-KSPVSRVELAEELGLTKTTVGEI 53 (380)
T ss_dssp HHHHH-HSCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHH-cCCcCHHHHHHHHCcCHHHHHHH
Confidence 66778 78899999999999999999986
No 314
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=80.56 E-value=0.27 Score=33.28 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAA 56 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~ 56 (151)
++.+.|.+.|++.+|+.+|++|+..+.
T Consensus 29 tq~eLA~~lGis~~~is~ie~G~~~~s 55 (104)
T 3trb_A 29 SANQLAKHLAIPTNRVTAILNGARSIT 55 (104)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 467789999999999999999987653
No 315
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=80.55 E-value=1.5 Score=28.32 Aligned_cols=31 Identities=3% Similarity=0.021 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCcCHHHH----HHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQL----AQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eL----A~~lgis~s~Is~~ 124 (151)
..|..+....++|+.+| |+.+|++++++++.
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~ 46 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDA 46 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHH
Confidence 34555555678999999 89999999998875
No 316
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=80.51 E-value=2.6 Score=31.43 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+||.+||..+|+++.+|++.-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l 198 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVL 198 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHH
Confidence 46899999999999999999873
No 317
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=80.28 E-value=1.5 Score=29.83 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=25.6
Q ss_pred HHHHHHHHhc--CCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARND--KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~--~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+... .++|+.+||+.++++++++++.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~ 73 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKA 73 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHH
Confidence 3445555555 7899999999999999998876
No 318
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=80.27 E-value=2.9 Score=29.15 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=25.5
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQA-RNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~-R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..+...|..+ ....++|+.+||+.+|+|+++|++.
T Consensus 39 ~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~ 74 (155)
T 2h09_A 39 DDYVELISDLIREVGEARQVDMAARLGVSQPTVAKM 74 (155)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHH
Confidence 3344444433 3446799999999999999998876
No 319
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=80.21 E-value=1.7 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCChhhHHhhhcCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGT 52 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~ 52 (151)
++-+.|+++|++..|+.++.+|.
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 46789999999999999998774
No 320
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.17 E-value=2 Score=29.60 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|+++++|++.
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~ 71 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLM 71 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 33445555556899999999999999999876
No 321
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=79.95 E-value=4.9 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=22.9
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
..+|..+||+.+|+|++++++.-+..
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46999999999999999999987644
No 322
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=79.89 E-value=1.3 Score=32.82 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 104 KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+||.+||..+|+++.+|++.-+
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~ 208 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLN 208 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHHH
Confidence 38999999999999999998743
No 323
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=79.89 E-value=5.1 Score=27.36 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=29.6
Q ss_pred HHHHHh-cCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH
Q 031871 96 IVQARN-DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 135 (151)
Q Consensus 96 Lk~~R~-~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~ 135 (151)
+..+.. ...+|..++|..+|+|+++++++-+...-.++..
T Consensus 84 a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~tp~~ 124 (133)
T 1u8b_A 84 ACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKA 124 (133)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHH
Confidence 333333 6789999999999999999999876554444443
No 324
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=79.79 E-value=1.9 Score=30.85 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.7
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
.+|..|+|+.+|||..||..||+-.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~G 40 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQG 40 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTT
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCC
Confidence 5899999999999999999999743
No 325
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=79.74 E-value=2.4 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+||.+||..+|+++.+|+++-+
T Consensus 177 l~~t~~~iA~~lg~sr~tvsR~l~ 200 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRAFS 200 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHH
Confidence 457899999999999999999743
No 326
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=79.73 E-value=6.9 Score=25.81 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc--CCcCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 031871 92 LKKAIVQARND--KKLTQSQLAQLINEKPQVIQEYESGKAIPN 132 (151)
Q Consensus 92 ~~~~Lk~~R~~--~glTQ~eLA~~lgis~s~Is~~E~G~~~p~ 132 (151)
+...+..+... ..+|..+||+.+|+|+.+++++-+.....+
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 33334444432 469999999999999999999876543333
No 327
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=79.70 E-value=1.9 Score=30.18 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+...-++|+.+||+.+|+++++++++
T Consensus 56 ~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~ 87 (161)
T 3e6m_A 56 LRLLSSLSAYGELTVGQLATLGVMEQSTTSRT 87 (161)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34455555556899999999999999999986
No 328
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=79.61 E-value=1.9 Score=31.11 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.6
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
.-+|..|+|+.+|||+.||..||+-
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~ 34 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESK 34 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 4589999999999999999999864
No 329
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=79.23 E-value=1.1 Score=32.69 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+||.+||..+|+++.+|+++-+
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~ 200 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMH 200 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHH
Confidence 458999999999999999998743
No 330
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=79.17 E-value=0.51 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCCCCCCCceeeccCCCCCccccCHHHHHHHHHcCCChhhHHhhhcC
Q 031871 5 GPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAG 51 (151)
Q Consensus 5 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~r~g~~v~t~~k~~~g 51 (151)
+...+||.+-.|..... .++-++...|+++|++.+|+.+|+.+
T Consensus 3 ~~~~~~~~~~ri~~~l~----~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 3 NEKARDWHRADVIAGLK----KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp CSSSSSCCHHHHHHHHH----TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred ccccCCCCHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45567999865432111 11235677999999999999999876
No 331
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=79.13 E-value=3.6 Score=28.78 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.9
Q ss_pred CcCHHHHHHHhCCCHHHHHHH
Q 031871 104 KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~ 124 (151)
++||.+||+.+++++++++++
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~ 72 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRN 72 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHH
Confidence 489999999999999998886
No 332
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=78.94 E-value=1.4 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+||++||..+|+++.+|++.-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l 201 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTL 201 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHH
Confidence 46899999999999999999863
No 333
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=78.94 E-value=3.8 Score=28.73 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=24.2
Q ss_pred HHHHH-HhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 95 AIVQA-RNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 95 ~Lk~~-R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.|..+ +...+.+|.+||+.+|+++++++++
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~ 66 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQPSLVRT 66 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCHHHHHHH
Confidence 34444 4456899999999999999999886
No 334
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=78.83 E-value=3.8 Score=29.02 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHh-cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 89 PSELKKAIVQARN-DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 89 ~~~~~~~Lk~~R~-~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...-...|..+.. ..++|+.+||+.++++++++++.
T Consensus 52 t~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~ 88 (166)
T 3deu_A 52 TQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRT 88 (166)
T ss_dssp CHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHH
Confidence 3333445666655 56799999999999999999886
No 335
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=78.48 E-value=2.4 Score=29.18 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCC---cCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH
Q 031871 90 SELKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERA 142 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~g---lTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~ 142 (151)
..+-+...++-.++| .|..++|+.+|||++++..+-..+..+=...+..+.+.
T Consensus 15 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~ 70 (177)
T 3kkc_A 15 VAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHH 70 (177)
T ss_dssp HHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHHHHHHH
Confidence 345555555555555 59999999999999999998776654433334333333
No 336
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.37 E-value=3.5 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHH-hcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R-~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+. ...++|+.+||+.+++++++++++
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~ 74 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGL 74 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHH
Confidence 34445554 334789999999999999999886
No 337
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=78.13 E-value=4.2 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcC------Cc-CHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDK------KL-TQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~------gl-TQ~eLA~~lgis~s~Is~~ 124 (151)
..+...|+...... .+ |..+||+.+|||+++|.+.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 34455555543332 24 8999999999999988765
No 338
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=78.03 E-value=4.9 Score=26.80 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
...+-..|-.....-++|..|+|++.||+++.|..|.+
T Consensus 34 s~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 34 VASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34455555555667789999999999999999999964
No 339
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=77.56 E-value=1.7 Score=32.97 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.5
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHc
Q 031871 104 KLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.+||.+||..+|+++.+|+++-+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~ 239 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILK 239 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 47999999999999999998753
No 340
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=77.37 E-value=4.6 Score=27.05 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhc------CCcCHHHHHHHhCCCHHHHHHH
Q 031871 89 PSELKKAIVQARND------KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~------~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.......|..++.. ..+++.+||+.++++++++++.
T Consensus 15 ~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~ 56 (96)
T 2obp_A 15 DPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRV 56 (96)
T ss_dssp CHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHH
Confidence 34444445545443 5699999999999999999875
No 341
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=77.33 E-value=5.9 Score=26.51 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
..+|..+||+.+|+|+.+++++-+..
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 37999999999999999999986544
No 342
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=77.29 E-value=2.4 Score=28.83 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+...-++|+.+||+.+|+++++|++.
T Consensus 43 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~ 74 (147)
T 1z91_A 43 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPM 74 (147)
T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHH
Confidence 34455555556899999999999999999876
No 343
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.04 E-value=3.6 Score=27.95 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+...-+ |+.+||+.+|++++++++.
T Consensus 40 ~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~ 70 (144)
T 3f3x_A 40 FSILKATSEEPR-SMVYLANRYFVTQSAITAA 70 (144)
T ss_dssp HHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHCCChhHHHHH
Confidence 444555555556 9999999999999999886
No 344
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=76.54 E-value=2.5 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.4
Q ss_pred CcCHHHHHHHhCCCHHHHHHH
Q 031871 104 KLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~ 124 (151)
.+|..+||+.+|+|+++|++.
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~ 53 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKK 53 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 599999999999999999875
No 345
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=76.53 E-value=2.8 Score=34.79 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=42.7
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 148 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~-~p~~~~l~kLa~~Lgv~l~ 148 (151)
+|..++..+++|-.|+|...|+....+.++..+.. .|....+..|+++|+|.+.
T Consensus 7 rl~hwmnark~t~~e~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~l~~~l~v~~~ 61 (443)
T 3g7d_A 7 KLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPS 61 (443)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHC--------CHHHHHHHHHTTCCGG
T ss_pred hHHHhhhhhccccHHHHhhcCCCHHHHHHHhcCcccCCCHHHHHHHHHHhcCChH
Confidence 56778888899999999999999999999988774 5788889999999999874
No 346
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=76.41 E-value=1.7 Score=29.86 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHhc--CCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARND--KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~--~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+... .++|+.+||+.+|+++++++++
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~ 77 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRGASITSM 77 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC------CHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHH
Confidence 4445555554 7899999999999999988876
No 347
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=76.34 E-value=3.8 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHh--cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 89 PSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 89 ~~~~~~~Lk~~R~--~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...-...|..+.. ..++|+.+||+.+|++++++++.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~ 77 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRL 77 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHH
Confidence 3334445555554 45899999999999999999886
No 348
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=76.28 E-value=1.8 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~ 67 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTM 67 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHH
Confidence 44455555667899999999999999888775
No 349
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=76.11 E-value=7 Score=27.64 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHcCCChhhHHhhhc-CCCccCCCCcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHHHH
Q 031871 32 VNAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQSQL 110 (151)
Q Consensus 32 ~~~a~r~g~~v~t~~k~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~eL 110 (151)
-+.|++.|+++.|++-|+. |-..|.... ...-+.-+. + ....-..|+.+| ..|+|.+++
T Consensus 6 ~e~A~~~gvs~~tLR~Ye~~GLl~p~~r~-~~g~R~Y~~--~----------------dl~~l~~I~~lr-~~G~sL~eI 65 (142)
T 3gp4_A 6 KEASEKSGVSADTIRYYERIGLIPPIHRN-ESGVRKFGA--E----------------DLRWILFTRQMR-RAGLSIEAL 65 (142)
T ss_dssp HHHHHHHTSCHHHHHHHHHHTSSCCCCBC-TTSCBCBCH--H----------------HHHHHHHHHHHH-HTTCCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCC-CCCCeeeCH--H----------------HHHHHHHHHHHH-HcCCCHHHH
Confidence 4689999999999999997 433321100 000011111 1 122344566665 569999998
Q ss_pred HHHhC
Q 031871 111 AQLIN 115 (151)
Q Consensus 111 A~~lg 115 (151)
.+.+.
T Consensus 66 k~~l~ 70 (142)
T 3gp4_A 66 IDYLA 70 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 350
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=75.72 E-value=2.4 Score=29.54 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 97 VQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 97 k~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
..+.+..+.|..++|+.+|||+.++..+-.++.
T Consensus 25 ~lf~~~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 25 LVLADHPTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp HHHTTCTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHcCCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 333333899999999999999999999866553
No 351
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=75.70 E-value=17 Score=28.30 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.....+|..+||+.++||.++|.++..
T Consensus 82 ~~~~~~t~~~ia~~l~vs~~tV~r~L~ 108 (345)
T 3hot_A 82 DEDDAQTQKQLAEQLEVSQQAVSNRLR 108 (345)
T ss_dssp HHCSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HhCccchHHHHHHHHCCCHHHHHHHHH
Confidence 456789999999999999999999865
No 352
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=75.28 E-value=5.8 Score=26.63 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=17.3
Q ss_pred CHHHHHHHhCCCHHHHHHH
Q 031871 106 TQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 106 TQ~eLA~~lgis~s~Is~~ 124 (151)
|..+||+.+|||+++|.+.
T Consensus 35 s~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 8999999999999988774
No 353
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=75.26 E-value=5.6 Score=28.16 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=28.0
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHH
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQ 134 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~ 134 (151)
+--.+.|..++|+.+|||+.++..+-.++..+=..
T Consensus 26 ~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~ 60 (197)
T 2f07_A 26 KGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPA 60 (197)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHH
T ss_pred hCcccCCHHHHHHHhCCCchHHHHhCCCHHHHHHH
Confidence 33456899999999999999999998877655333
No 354
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=74.97 E-value=4.4 Score=28.13 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.9
Q ss_pred CCcCHHHHHHHhCCCHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~ 124 (151)
-++|+.+||+.+++++++++++
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~ 71 (147)
T 4b8x_A 50 GELPMSKIGERLMVHPTSVTNT 71 (147)
T ss_dssp GEEEHHHHHHHHTCCHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHH
Confidence 3599999999999999999886
No 355
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=74.87 E-value=0.4 Score=33.20 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCC-ccCCCCcccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTN-KAASSSTSLNTRKLDE 69 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~-~~~~~~~~~~~~kl~~ 69 (151)
++.+.|.+.|++..++.+||+|.. .|..+.+.+.+..|+.
T Consensus 55 TQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv 95 (120)
T 2o38_A 55 SQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQ 95 (120)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence 467799999999999999999976 5433333333444443
No 356
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=74.82 E-value=3.5 Score=30.64 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=23.5
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.|..+. ...+|..+||+.+|+|++++++.
T Consensus 25 IL~~L~-~~~~s~~eLA~~lglS~stv~~~ 53 (192)
T 1uly_A 25 ILKLLR-NKEMTISQLSEILGKTPQTIYHH 53 (192)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHHHHHHH
Confidence 344455 56899999999999999998874
No 357
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=74.73 E-value=7.5 Score=27.11 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHcCCChhhHHhhhcC
Q 031871 32 VNAARRAGADIETVRKSHAG 51 (151)
Q Consensus 32 ~~~a~r~g~~v~t~~k~~~g 51 (151)
-+.|++.|+++.|++.|+.-
T Consensus 4 ~e~A~~~gvs~~tLR~ye~~ 23 (135)
T 1q06_A 4 SDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHC
Confidence 46899999999999999863
No 358
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=74.72 E-value=3.3 Score=29.65 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=26.2
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 131 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p 131 (151)
+--.+.|..++|+.+|||+.+|..+-.++..+
T Consensus 24 ~G~~~~s~~~IA~~aGvs~~tiY~~F~sKe~L 55 (202)
T 2d6y_A 24 HGIAGARIDRIAAEARANKQLIYAYYGNKGEL 55 (202)
T ss_dssp HTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44456899999999999999999998766433
No 359
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=74.66 E-value=3.6 Score=30.55 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+...-++|+.+||+.+|+++++++++
T Consensus 51 ~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~ 82 (207)
T 2fxa_A 51 HHILWIAYQLNGASISEIAKFGVMHVSTAFNF 82 (207)
T ss_dssp HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHH
Confidence 34455555556899999999999999998876
No 360
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=74.60 E-value=2 Score=30.30 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
.+-.++...|+|.+|+|+.+|+|.++|...-
T Consensus 100 ~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l 130 (157)
T 2lfw_A 100 QALLLTAMEGFSPEDAAYLIEVDTSEVETLV 130 (157)
T ss_dssp HHHTTTSSSCCCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3445566789999999999999999998754
No 361
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=74.60 E-value=2.9 Score=29.12 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.2
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.--.++|..++|+++|||++++..+-.++.
T Consensus 18 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 47 (194)
T 3bqz_B 18 NGYNATTTGEIVKLSESSKGNLYYHFKTKE 47 (194)
T ss_dssp HTTTTCCHHHHHHHTTCCHHHHHHHTSSHH
T ss_pred cCCccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 444678999999999999999999876654
No 362
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=74.58 E-value=0.45 Score=32.62 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=23.7
Q ss_pred CHHHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 28 DEKVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 28 ~~~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
+=++.+.|.+.|++.+++.+||+|...+
T Consensus 20 glSq~eLA~~~gis~~~is~iE~G~~~~ 47 (112)
T 2wus_R 20 RITLLDASLFTNINPSKLKRIEEGDLKG 47 (112)
T ss_dssp TCCHHHHHHHSSCCHHHHHHHHHTCCTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCC
Confidence 3456789999999999999999997653
No 363
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=74.37 E-value=3.6 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=25.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAI 130 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~ 130 (151)
+--.+.|..++|+.+|||++++..+-..+..
T Consensus 32 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 32 GDVVDISLSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HTSSCCCHHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred cCcccccHHHHHHHhCCChhhHhHhcCCHHH
Confidence 4445789999999999999999999776543
No 364
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=74.20 E-value=4.3 Score=28.43 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.6
Q ss_pred HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 99 ARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-+--.+.|..++|+.+|||+.++..+-.++.
T Consensus 18 ~~G~~~~s~~~IA~~agvsk~t~Y~~F~sK~ 48 (190)
T 3vpr_A 18 EKGYEATSVQDLAQALGLSKAALYHHFGSKE 48 (190)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HhCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444678999999999999999999877653
No 365
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=74.18 E-value=2.2 Score=28.95 Aligned_cols=32 Identities=0% Similarity=0.011 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+....++|+.+||+.+|++++++++.
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~ 71 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPL 71 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHH
Confidence 34455566666899999999999999888876
No 366
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=74.00 E-value=4.9 Score=27.45 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...++..+||+.+|+++++|++.
T Consensus 57 ~~~~s~~ela~~lgis~stvs~~ 79 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQ 79 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHH
Confidence 35799999999999999999885
No 367
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=73.86 E-value=0.66 Score=33.16 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+||++||..+|+++.+++++-+
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~ 190 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp ------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHH
Confidence 468999999999999999999865
No 368
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=73.85 E-value=11 Score=28.64 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=38.8
Q ss_pred HHHHHHHcCCChhhHHhhhc-CCCccCCC-CcccccccccccchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHH
Q 031871 31 VVNAARRAGADIETVRKSHA-GTNKAASS-STSLNTRKLDEDTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQS 108 (151)
Q Consensus 31 ~~~~a~r~g~~v~t~~k~~~-g~~~~~~~-~~~~~~~kl~~~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~ 108 (151)
.-+.|++.|+++.|+|.|+. |-..|... +. +--+.-. .++ ...-..|+.+|. .|+|.+
T Consensus 8 i~e~a~~~gvs~~tlr~y~~~gll~p~~~d~~--~g~R~y~-~~~----------------~~~l~~i~~l~~-~g~~l~ 67 (278)
T 1r8e_A 8 IGEVSKLANVSIKALRYYDKIDLFKPAYVDPD--TSYRYYT-DSQ----------------LIHLDLIKSLKY-IGTPLE 67 (278)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTTSSCCSEECTT--TCCEEEE-TGG----------------GGHHHHHHHHHH-TTCCHH
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCC--CCccccC-HHH----------------HHHHHHHHHHHH-CCCCHH
Confidence 34689999999999999976 43433210 00 0001100 111 122344666644 599999
Q ss_pred HHHHHhCCC
Q 031871 109 QLAQLINEK 117 (151)
Q Consensus 109 eLA~~lgis 117 (151)
++.+.+...
T Consensus 68 ~i~~~~~~~ 76 (278)
T 1r8e_A 68 EMKKAQDLE 76 (278)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHhC
Confidence 999888765
No 369
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=73.78 E-value=2.5 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++.++-.++.
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred ccCCHHHHHHHhCCCcchHHHHcCCHH
Confidence 458999999999999999999866553
No 370
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=73.53 E-value=3.2 Score=28.46 Aligned_cols=32 Identities=3% Similarity=0.006 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCcCHHHHHHHh--CCCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLI--NEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~l--gis~s~Is~~ 124 (151)
...|..++..-.+|..+||+.+ |+|+++|++.
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~r 49 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRR 49 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHH
Confidence 4445666666789999999999 9999999875
No 371
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=73.40 E-value=4.8 Score=31.23 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHcCCChhhHHhhhc
Q 031871 31 VVNAARRAGADIETVRKSHA 50 (151)
Q Consensus 31 ~~~~a~r~g~~v~t~~k~~~ 50 (151)
.-+.|++.|+++.|++-|+.
T Consensus 6 I~evA~~~gvs~~TLRyYe~ 25 (249)
T 3qao_A 6 IKELAELTGVSVRTLHHYDK 25 (249)
T ss_dssp HHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34689999999999999997
No 372
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=73.19 E-value=4.5 Score=26.45 Aligned_cols=36 Identities=3% Similarity=0.075 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhc------CCc-CHHHHHHHhCCCHHHHHHHH
Q 031871 90 SELKKAIVQARND------KKL-TQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 90 ~~~~~~Lk~~R~~------~gl-TQ~eLA~~lgis~s~Is~~E 125 (151)
..+...|+..... ..+ |..+||+.+|+|+++|.+.-
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4455555544332 234 89999999999999999863
No 373
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=73.17 E-value=3.4 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=23.2
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 50 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 50 YATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 358999999999999999999866553
No 374
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=72.83 E-value=8 Score=26.43 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhcCC------c-CHHHHHHHhCCCHHHHHHH
Q 031871 89 PSELKKAIVQARNDKK------L-TQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~g------l-TQ~eLA~~lgis~s~Is~~ 124 (151)
...+...|+....... + |..+||+.+|||+++|.+.
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~A 57 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3455555655544332 3 7999999999999988765
No 375
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=72.80 E-value=0.73 Score=37.29 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
...|..+....++||.+||+.+|+|++||++.-
T Consensus 23 ~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l 55 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITERVLRTET 55 (345)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 344556666779999999999999999998863
No 376
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=72.72 E-value=4.1 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.5
Q ss_pred HHHHHhcCCcCHHHHHHHh-CCCHHHHHHH
Q 031871 96 IVQARNDKKLTQSQLAQLI-NEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~l-gis~s~Is~~ 124 (151)
|..+. .-.+++.|||+.+ |++++++++.
T Consensus 20 L~~L~-~~~~~~~eLa~~l~~is~~tls~~ 48 (107)
T 2hzt_A 20 LXHLT-HGKKRTSELKRLMPNITQKMLTQQ 48 (107)
T ss_dssp HHHHT-TCCBCHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHH-hCCCCHHHHHHHhcCCCHHHHHHH
Confidence 33343 4569999999999 9999999884
No 377
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=72.70 E-value=6.3 Score=27.70 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=23.4
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
+--.+.|..++|+.+|||+++|..+-..
T Consensus 28 ~G~~~~t~~~IA~~agvsk~tlY~~F~s 55 (192)
T 2fq4_A 28 SGFKAVTVDKIAERAKVSKATIYKWWPN 55 (192)
T ss_dssp HCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cCcccccHHHHHHHcCCCHHHHHHHCCC
Confidence 4445689999999999999999998543
No 378
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=72.51 E-value=4.4 Score=28.57 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=26.7
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 131 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p 131 (151)
+--.++|..++|+.+|||++++..+-..+..+
T Consensus 33 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L 64 (207)
T 2rae_A 33 QGFDATSVDEVAEASGIARRTLFRYFPSKNAI 64 (207)
T ss_dssp HCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTG
T ss_pred cCcccCCHHHHHHHhCCCcchHhhhCCCHHHH
Confidence 34456899999999999999999998877544
No 379
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=72.47 E-value=3.6 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=24.3
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.+.|..++|+.+|||++++..+-.++.
T Consensus 29 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (202)
T 3lwj_A 29 GYYNTSIRDIIALSEVGTGTFYNYFVDKE 57 (202)
T ss_dssp CTTTCCHHHHHHHHCSCHHHHHHHCSSHH
T ss_pred CcccCCHHHHHHHhCCCchhHHHHcCCHH
Confidence 34568999999999999999999876553
No 380
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=72.42 E-value=2.9 Score=28.95 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=23.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+++|||++++..+-.++.
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 468999999999999999999876653
No 381
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=72.31 E-value=3.2 Score=29.34 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=25.0
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+++|..+-.++.
T Consensus 30 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 30 KGFVGVGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 344578999999999999999999876654
No 382
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=72.25 E-value=3.2 Score=29.29 Aligned_cols=29 Identities=10% Similarity=-0.043 Sum_probs=24.3
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.++|..++|+.+|||++++..|-.++.
T Consensus 31 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 31 GVSATSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CcccCCHHHHHHHhCCCceeehhhcCCHH
Confidence 33568999999999999999999876653
No 383
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=72.00 E-value=3.5 Score=29.05 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCC-CHHHHHHHHcC
Q 031871 90 SELKKAIVQARNDKKLTQSQLAQLINE-KPQVIQEYESG 127 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ~eLA~~lgi-s~s~Is~~E~G 127 (151)
+.+.+.|-.+. ..|.|..++++..|| |.+||.+|.+-
T Consensus 15 ~e~~e~I~~~i-~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 15 PEVADDICSLL-SSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp TTHHHHHHHHH-HTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 34444454443 369999999999999 99999999764
No 384
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.96 E-value=3.6 Score=26.74 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...++..|||+.+|+++++|++.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~ 56 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQ 56 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHH
Confidence 35699999999999999998875
No 385
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=71.88 E-value=1.3 Score=31.36 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.3
Q ss_pred hcCCcCHHHHHH----Hh--CCCHHHHHHHHc
Q 031871 101 NDKKLTQSQLAQ----LI--NEKPQVIQEYES 126 (151)
Q Consensus 101 ~~~glTQ~eLA~----~l--gis~s~Is~~E~ 126 (151)
..-++||.+||+ .. |++++||++|.+
T Consensus 27 ~~~~~~q~~la~wa~~~f~~~is~stis~ilk 58 (144)
T 1iuf_A 27 LQNRSGQQDLIEWFREKFGKDISQPSVSQILS 58 (144)
T ss_dssp SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHH
T ss_pred hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHh
Confidence 456799999999 88 899999998854
No 386
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=71.85 E-value=3.9 Score=27.80 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=24.6
Q ss_pred HHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 99 ARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
....-++|..|.|++.|||.++|.+|++
T Consensus 45 ~v~~g~lS~~EAa~ry~Is~~ei~~W~r 72 (101)
T 2oa4_A 45 GVIYGLITLAEAKQTYGLSDEEFNSWVS 72 (101)
T ss_dssp HHHHTTCCHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4455689999999999999999999976
No 387
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=71.81 E-value=7.3 Score=27.30 Aligned_cols=27 Identities=7% Similarity=-0.082 Sum_probs=23.7
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
++-.|.+..+||++.|+|..+|.++-+
T Consensus 88 ~~f~G~n~~eLArkYgLSer~I~~Ii~ 114 (129)
T 1rr7_A 88 NDFNGRNVSELTTRYGVTFNTVYKAIR 114 (129)
T ss_dssp HHCCSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 445699999999999999999999864
No 388
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=71.72 E-value=3.2 Score=28.08 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.4
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...++..+||+.+|+++++|++.
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~ 54 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNH 54 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHH
Confidence 45689999999999999999986
No 389
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=71.69 E-value=4.6 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHhcCCcCHHHHHHHhC----CCHHHHHHH
Q 031871 95 AIVQARNDKKLTQSQLAQLIN----EKPQVIQEY 124 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lg----is~s~Is~~ 124 (151)
.|..+....++|+.+||+.++ +++++|+++
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~ 48 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTL 48 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHH
Confidence 344444467899999999999 889998886
No 390
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=71.54 E-value=2.1 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHH-HhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQA-RNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~-R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+ ....++|+.+||+.+|++++++++.
T Consensus 50 ~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~ 82 (160)
T 3boq_A 50 FDAMAQLARNPDGLSMGKLSGALKVTNGNVSGL 82 (160)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHH
Confidence 3445555 4567899999999999999888775
No 391
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=71.43 E-value=4.6 Score=28.39 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=23.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+++|||++++..+-..+.
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (185)
T 2yve_A 23 ETLSYDSLAEATGLSKSGLIYHFPSRH 49 (185)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred hhccHHHHHHHhCCChHHHHHhCcCHH
Confidence 457999999999999999999866543
No 392
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.34 E-value=5.2 Score=26.64 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=20.2
Q ss_pred CCcCHHHHHHHh-CCCHHHHHHH
Q 031871 103 KKLTQSQLAQLI-NEKPQVIQEY 124 (151)
Q Consensus 103 ~glTQ~eLA~~l-gis~s~Is~~ 124 (151)
.++++.+||+.+ |++++++++.
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~ 56 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDR 56 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHH
Confidence 579999999999 9999999875
No 393
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.29 E-value=4.8 Score=31.61 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
...|.......+.++.+.|+.+|||++|+.+..
T Consensus 270 ~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl 302 (304)
T 1ojl_A 270 KEVILAALEKTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456777778888999999999999999998753
No 394
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=71.28 E-value=8.3 Score=24.49 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 89 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
...+...|...|... ||....|...||..+||..--+|.
T Consensus 16 e~~L~~Ai~aVr~g~-mS~~~Aak~yGVP~sTL~~RVk~~ 54 (70)
T 2cob_A 16 SEILEEAISVVMSGK-MSVSKAQSIYGIPHSTLEYKVKER 54 (70)
T ss_dssp HHHHHHHHHHHHTTS-SCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHhCCChHHHHHHHHhh
Confidence 356788888888755 999999999999999998766553
No 395
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=71.27 E-value=4.9 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=23.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 27 YGVSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 458999999999999999999866543
No 396
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=71.22 E-value=7.3 Score=26.93 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=26.6
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+-.-+--.+.|..++|+.+|||++++..+-.++.
T Consensus 14 lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~sKe 47 (179)
T 2eh3_A 14 LFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKE 47 (179)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHcCCccCCHHHHHHHhCCCcHHHHHHcCCHH
Confidence 3333445678999999999999999999866553
No 397
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=71.10 E-value=2.8 Score=29.02 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=24.1
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.+.|..++|+.+|||++++..+-.++.
T Consensus 27 G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 27 GYNAFSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CcccCCHHHHHHHhCCCcchhhhcCCCHH
Confidence 33568999999999999999999866543
No 398
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=70.90 E-value=4.9 Score=27.51 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCC---cCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 91 ELKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 91 ~~~~~Lk~~R~~~g---lTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.+-+...++-.++| .|..++|+++|||++++..+-.++.
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 34444444444555 6999999999999999999876654
No 399
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=70.89 E-value=2.3 Score=29.67 Aligned_cols=30 Identities=10% Similarity=-0.099 Sum_probs=24.4
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||++++..+-.++.
T Consensus 23 ~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 23 SGYAGTAISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred hCcCcCCHHHHHHHhCCCccHHHHhCCCHH
Confidence 344578999999999999999998765543
No 400
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=70.71 E-value=3.9 Score=28.96 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcC---CcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 91 ELKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 91 ~~~~~Lk~~R~~~---glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
.+-+...++-.++ ++|..++|+.+|||++++..+-.++
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 16 RVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCCH
Confidence 3433344443444 5699999999999999999986654
No 401
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=70.70 E-value=4.7 Score=28.56 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=25.5
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKAI 130 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~ 130 (151)
+--.+.|..++|+.+|||+.++..+-.++..
T Consensus 25 ~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~ 55 (204)
T 3anp_C 25 RGFQETTATEIAKAAHVSRGTFFNYYPYKEA 55 (204)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHHHCSSTHH
T ss_pred cCcccccHHHHHHHcCCchHHHHHHcCCHHH
Confidence 3345689999999999999999999776643
No 402
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=70.68 E-value=3.4 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=23.9
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.++|..++|+.+|||++++..+-.++.
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 32 FHETSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred cccccHHHHHHHhCCchHHHHHHhCCHH
Confidence 3468999999999999999999876554
No 403
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=70.50 E-value=6.8 Score=26.60 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=22.5
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
..+|..+||+.+|+|+.++++.-+-.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35999999999999999999987643
No 404
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=70.44 E-value=6 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcC------Cc-CHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDK------KL-TQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~------gl-TQ~eLA~~lgis~s~Is~~ 124 (151)
..+...|+...... .+ |..+||+.+|||+++|.+.
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~A 55 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKA 55 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 44555555544332 24 9999999999999998864
No 405
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=70.22 E-value=4.6 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=25.9
Q ss_pred HHHHHHHHHHH-hcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R-~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
+++-+.|-.+- ...++++.+||+.+|++++++++.
T Consensus 5 edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~ 40 (214)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEM 40 (214)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHH
Confidence 34444454443 345699999999999999999886
No 406
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=70.22 E-value=7.7 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=23.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 26 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 52 (195)
T 2dg7_A 26 DNVTVTDIAERAGLTRRSYFRYFPDKR 52 (195)
T ss_dssp GGCCHHHHHHHTTCCHHHHHHHCSSTT
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 358999999999999999999977764
No 407
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=70.16 E-value=4.1 Score=26.32 Aligned_cols=31 Identities=19% Similarity=-0.018 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHH-HHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQ-VIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s-~Is~~ 124 (151)
..|..+...-+.|..+||+.+|++.. .|.+.
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~h 46 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTKARDINAV 46 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHH
Confidence 33455566778999999999999998 66553
No 408
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=70.11 E-value=4.7 Score=28.19 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=24.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+++|||+++|..+-.++.
T Consensus 23 ~G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 23 KGYDGTTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp HCTTTCCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred cCcccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 334568999999999999999999876654
No 409
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=70.02 E-value=4.5 Score=28.93 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+..+-.-+- .+.|..++|+.+|||+++|..+-.++.
T Consensus 29 A~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 29 ATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp HHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 333444456 789999999999999999999877654
No 410
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=69.96 E-value=7.1 Score=24.24 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhC----CCHHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLIN----EKPQVIQEYE 125 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lg----is~s~Is~~E 125 (151)
...|..+....++|+.|||+.++ +++++|+++-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l 48 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTML 48 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHH
Confidence 34455555567899999999996 7889888763
No 411
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=69.94 E-value=3.9 Score=28.57 Aligned_cols=30 Identities=3% Similarity=-0.134 Sum_probs=24.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.++|..++|+.+|||++++..+-.++.
T Consensus 24 ~G~~~~t~~~IA~~Agvs~~tly~~F~sK~ 53 (194)
T 3dpj_A 24 QGFAQTSFVDISAAVGISRGNFYYHFKTKD 53 (194)
T ss_dssp HCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCcccCCHHHHHHHHCCChHHHHHHcCCHH
Confidence 334578999999999999999999876553
No 412
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.90 E-value=2.4 Score=26.16 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.1
Q ss_pred HHHHHHHcCCChhhHHhhhcCCC
Q 031871 31 VVNAARRAGADIETVRKSHAGTN 53 (151)
Q Consensus 31 ~~~~a~r~g~~v~t~~k~~~g~~ 53 (151)
.-+.|+++|++..|+.++.+|..
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998864
No 413
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=69.76 E-value=2.4 Score=31.42 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=28.0
Q ss_pred CcCHHHHHHHhCCCH-HHHHHHHc-----C-------C-CCCCHHHHHHHHHH
Q 031871 104 KLTQSQLAQLINEKP-QVIQEYES-----G-------K-AIPNQQILTKLERA 142 (151)
Q Consensus 104 glTQ~eLA~~lgis~-s~Is~~E~-----G-------~-~~p~~~~l~kLa~~ 142 (151)
.+||.+||..+|+++ .+|++.-+ | + ...+.+.|.+++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~~~~~~ 221 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPK 221 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhcC
Confidence 799999999999999 59987632 1 1 12366677766653
No 414
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=69.68 E-value=1.8 Score=32.44 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCCCCccccccccccc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDED 70 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~~~~~~~~~kl~~~ 70 (151)
++.+.|++.|++.+|+.+|+.|...|..+...+.+..++.+
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~ 72 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVS 72 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcC
Confidence 34678999999999999999998765433333344444433
No 415
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=69.68 E-value=4.3 Score=29.59 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=24.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.++|..++|+.+|||++++..+-..+.
T Consensus 59 ~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 59 VGYDALSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp HCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cChhhccHHHHHHHHCCCchhHHHHcCCHH
Confidence 334568999999999999999999876654
No 416
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=69.54 E-value=6.3 Score=27.69 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=20.3
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
.-.+++.||++.+|++++++++.
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~ 57 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAAR 57 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHH
Confidence 45699999999999999999875
No 417
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=69.36 E-value=6.3 Score=30.00 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHHhc-CCcCHHHHHHHhCCCHHHHHHH
Q 031871 96 IVQARND-KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 96 Lk~~R~~-~glTQ~eLA~~lgis~s~Is~~ 124 (151)
|..+... .++|..|||+.+|+++++++++
T Consensus 14 L~~l~~~~~~~~~~ela~~~gl~~stv~r~ 43 (249)
T 1mkm_A 14 LDFIVKNPGDVSVSEIAEKFNMSVSNAYKY 43 (249)
T ss_dssp HHHHHHCSSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3444333 3799999999999999999986
No 418
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=69.32 E-value=4.4 Score=28.54 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=24.5
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.++|..++|+.+|||++++.++-.++.
T Consensus 35 G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 35 GFHGTRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp CTTTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred CcchhhHHHHHHHHCCChhHHHHhCCCHH
Confidence 34568999999999999999999876654
No 419
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=69.29 E-value=5.7 Score=27.69 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.7
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.++|..++|+.+|||++++..+-..+.
T Consensus 33 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (208)
T 3cwr_A 33 GGAAAMTMEGVASEAGIAKKTLYRFASGRA 62 (208)
T ss_dssp HCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCHHhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 334578999999999999999999866543
No 420
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=68.91 E-value=3.2 Score=29.68 Aligned_cols=30 Identities=13% Similarity=-0.028 Sum_probs=24.9
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.++|..++|+.+|||++++..+-.++.
T Consensus 28 ~G~~~~s~~~IA~~agvs~~t~Y~hF~~Ke 57 (198)
T 3cjd_A 28 EGLASLRARELARQADCAVGAIYTHFQDLN 57 (198)
T ss_dssp HCGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred CChhhcCHHHHHHHhCCCccHHHHHhCCHH
Confidence 444568999999999999999999866654
No 421
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=68.64 E-value=2.1 Score=29.89 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.+.|..++|+.+|||++++..+-.++.
T Consensus 33 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 59 (191)
T 4aci_A 33 EGATVRRLEEATGKSRGAIFHHFGDKE 59 (191)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHHCCCchHHHHHCCCHH
Confidence 458999999999999999999977654
No 422
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=68.61 E-value=5.7 Score=29.59 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPN 132 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~ 132 (151)
..+..+++..-+|-.|||+.+|+|..||.+=-.--..|.
T Consensus 16 ~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 16 AIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 334455666668999999999999999987444334454
No 423
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=68.59 E-value=2.7 Score=32.26 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
.-+|..|+|+.+|+|..||..||+-
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr~y~~~ 28 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALRYYDKI 28 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred CcEeHHHHHHHHCcCHHHHHHHHHC
Confidence 4588999999999999999999864
No 424
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=68.57 E-value=3.5 Score=28.53 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSKS 53 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCHH
Confidence 568999999999999999999866553
No 425
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=68.54 E-value=3.6 Score=28.74 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=23.6
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.++|..++|+.+|||++++..+-..+.
T Consensus 35 ~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 35 IGRGGHADIAEIAQVSVATVFNYFPTRE 62 (206)
T ss_dssp CSSCCHHHHHHHHTSCHHHHHHHCCSHH
T ss_pred cccccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3458999999999999999999866553
No 426
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=68.42 E-value=13 Score=26.39 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCChhhHHhhhcC
Q 031871 30 KVVNAARRAGADIETVRKSHAG 51 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g 51 (151)
+.-+.|++.|+++.|++-|+.-
T Consensus 18 ~I~evA~~~gvs~~tLR~Ye~~ 39 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYYDKQ 39 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHT
T ss_pred eHHHHHHHHCcCHHHHHHHHHC
Confidence 3567999999999999999963
No 427
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=68.32 E-value=3 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.+.|..++|+.+|||++++..+-.++.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (156)
T 3ljl_A 33 DKMSYTTLSQQTGVSRTGISHHFPKKT 59 (156)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred hhcCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 357999999999999999999877664
No 428
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=68.27 E-value=2.5 Score=30.16 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcC---CcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 92 LKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 92 ~~~~Lk~~R~~~---glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+-+.-.++-.++ +.|..++|+.+|||+.+|..+-.++.
T Consensus 22 Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 22 LILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred HHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 333334444444 47999999999999999999987664
No 429
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=68.03 E-value=1.2 Score=35.67 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=35.0
Q ss_pred CHHHHHHHHHcCCChhhHHhhhcCCC-ccCCCCcccccccccccchhhhH
Q 031871 28 DEKVVNAARRAGADIETVRKSHAGTN-KAASSSTSLNTRKLDEDTENLAL 76 (151)
Q Consensus 28 ~~~~~~~a~r~g~~v~t~~k~~~g~~-~~~~~~~~~~~~kl~~~~~~~~~ 76 (151)
+=++.+.|.++|++.+++.+||.|+. .|+...+.+.+..|+.+.++...
T Consensus 25 gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~er~~ 74 (292)
T 3pxp_A 25 VWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGERRE 74 (292)
T ss_dssp BCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 34567899999999999999999986 65544445555566655544333
No 430
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=68.02 E-value=4.3 Score=29.49 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=23.8
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKAIP 131 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~~p 131 (151)
=+|..|+|+.+||+.++|.++-+....+
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G~L~ 58 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGHLV 58 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTSCC
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCCCce
Confidence 4799999999999999999997755444
No 431
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=67.94 E-value=4 Score=27.46 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=20.8
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...++..+||+.+|+|++++++.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~h 51 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKH 51 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHH
Confidence 56789999999999999999875
No 432
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=67.90 E-value=5.6 Score=33.61 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
.++|..|+|+.+|||+.+|.+++.
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~ 417 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIEN 417 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 689999999999999999999986
No 433
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=67.90 E-value=4.4 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 99 ARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-+--.+.|..++|+.+|||+.+|..+-.++.
T Consensus 25 ~~G~~~~s~~~IA~~aGvs~gtlY~yF~sKe 55 (194)
T 2nx4_A 25 ARGIEAANMRDIATEAGYTNGALSHYFAGKD 55 (194)
T ss_dssp HHCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hcCcccCCHHHHHHHhCCCcchHHHhCcCHH
Confidence 3444678999999999999999999866553
No 434
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=67.86 E-value=1.1 Score=33.00 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 95 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 95 ~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.|.++. ..|+|..++|+.+|||++|+.+|.+...
T Consensus 150 ~i~~l~-~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 150 QAGRLL-AQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp -----------------------------------
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 344444 3689999999999999999999987543
No 435
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=67.58 E-value=1.1 Score=32.72 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
..+||.+||..+|+++.+|++.-+
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~ 186 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQ 186 (213)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 358999999999999999998754
No 436
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=67.48 E-value=4.2 Score=29.38 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.2
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.++|..++|+.+|||++++..+-.++.
T Consensus 22 G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 50 (228)
T 3nnr_A 22 GERNITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ChhhcCHHHHHHHhCCCCccchhcCCCHH
Confidence 33458999999999999999999876654
No 437
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=67.39 E-value=2.9 Score=29.09 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.+.|..++|+.+|||++++..+-.++.
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (186)
T 2jj7_A 26 EGTSIQEIAKEAKVNVAMASYYFNGKE 52 (186)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCChhhhhhhcCCHH
Confidence 458999999999999999999876543
No 438
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=67.17 E-value=6.7 Score=27.92 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=25.3
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+.+|..+-.++-
T Consensus 28 ~G~~~ts~~~IA~~aGvsk~tlY~~F~sKe 57 (211)
T 3bhq_A 28 KGYDGTSMEEIATKAGASKQTVYKHFTDKE 57 (211)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred hCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344678999999999999999999877654
No 439
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=67.11 E-value=19 Score=22.16 Aligned_cols=31 Identities=3% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHHHHHhc--CCcCHHHHHHHh-----CCCHHHHHHHH
Q 031871 95 AIVQARND--KKLTQSQLAQLI-----NEKPQVIQEYE 125 (151)
Q Consensus 95 ~Lk~~R~~--~glTQ~eLA~~l-----gis~s~Is~~E 125 (151)
.|..+... ..+|..||++.+ +++.+||.+..
T Consensus 22 IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L 59 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 34444443 479999999999 99999998853
No 440
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=67.05 E-value=5.2 Score=28.36 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 99 ARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-+--.+.|..++|+.+|||+.++..+-.++.
T Consensus 29 ~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 29 ERGLRATTVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp HHCSTTCCHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred HcCchhcCHHHHHHHhCCCchhHHHhcCCHH
Confidence 3444678999999999999999999876654
No 441
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=67.01 E-value=5.2 Score=29.23 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.9
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
++|..++|+.+|||+.+|..+-.++.
T Consensus 64 ~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 64 DISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 46999999999999999999876654
No 442
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=66.70 E-value=4.7 Score=28.69 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=25.4
Q ss_pred HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 99 ARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-+--.+.|..++|+.+|||+.+|..+-.++.
T Consensus 25 ~~G~~~~s~~~IA~~aGvs~~t~Y~~F~sKe 55 (210)
T 3vib_A 25 RKGIARTSLNEIAQAAGVTRDALYWHFKNKE 55 (210)
T ss_dssp HHCTTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HhCcccCCHHHHHHHHCcCHHHHHHHCCCHH
Confidence 3444678999999999999999999866553
No 443
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=66.70 E-value=4.2 Score=28.57 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHh--cCCcCHHHHHHHhCCCHHHHHHH
Q 031871 93 KKAIVQARN--DKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~--~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
...|..+.. ..++|+.+||+.+|+++++|+++
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~ 82 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRLISRAPDITRL 82 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHH
Confidence 444555555 36899999999999999988876
No 444
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=66.64 E-value=4.1 Score=29.01 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y~~F~sK~ 75 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFYHYFRNKA 75 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CcCcHHHHHHHhCCCcchhhhhCCCHH
Confidence 567999999999999999999866553
No 445
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=66.63 E-value=5.2 Score=29.17 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcC---CcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 92 LKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 92 ~~~~Lk~~R~~~---glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+-+...++-.++ ++|..++|+++|||++++..+-.++.
T Consensus 18 Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 18 LIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 334444444444 46999999999999999999876554
No 446
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=66.62 E-value=9.3 Score=27.13 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
+..+-.-+--.+.|..++|+.+|||+.+|..+-.++
T Consensus 20 A~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~sK 55 (202)
T 2i10_A 20 AMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSK 55 (202)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred HHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhCCH
Confidence 444444455677899999999999999999987654
No 447
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=66.62 E-value=5.9 Score=30.09 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=23.6
Q ss_pred HHHHHhc-CCcCHHHHHHHhCCCHHHHHHHH
Q 031871 96 IVQARND-KKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 96 Lk~~R~~-~glTQ~eLA~~lgis~s~Is~~E 125 (151)
|..+... .++|..|||+.+|+++++++++-
T Consensus 12 L~~l~~~~~~~s~~ela~~~gl~~stv~r~l 42 (241)
T 2xrn_A 12 MRALGSHPHGLSLAAIAQLVGLPRSTVQRII 42 (241)
T ss_dssp HHHHHTCTTCEEHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3344333 47999999999999999999974
No 448
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=66.60 E-value=3.9 Score=29.16 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=24.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||++++..+-.++.
T Consensus 19 ~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~ 48 (212)
T 3rh2_A 19 HGERTITTNHIAAHLDISPGNLYYHFRNKE 48 (212)
T ss_dssp HCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 344568999999999999999999876654
No 449
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=66.59 E-value=1.2 Score=32.77 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 97 VQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 97 k~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
-.++-..|+|.+|+|+.+|+|.++|..+..
T Consensus 207 l~l~~~~g~s~~EIA~~lgis~~tV~~~~~ 236 (243)
T 1l0o_C 207 VYLRYYKDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp ------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334556799999999999999999988754
No 450
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=66.58 E-value=4.9 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=24.2
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.+.|..++|+.+|||++++..+-.++.
T Consensus 28 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 28 GLCKTTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp CSSSCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33468999999999999999999866553
No 451
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=66.55 E-value=0.95 Score=32.82 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCcc
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~ 55 (151)
++.+.|++.|++.+|+.+|+.|...|
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~p 47 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAIS 47 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSCC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCCC
Confidence 56789999999999999999997764
No 452
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=66.35 E-value=3.8 Score=29.39 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=30.5
Q ss_pred HHHHHHHHHH-HhcC---CcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 90 SELKKAIVQA-RNDK---KLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 90 ~~~~~~Lk~~-R~~~---glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
..+-....++ -.++ ++|..++|+++|||++++..+-.++.
T Consensus 22 ~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~ 65 (185)
T 3o60_A 22 TKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEII 65 (185)
T ss_dssp HHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3455555555 4554 57999999999999999999877664
No 453
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=66.24 E-value=6.7 Score=29.91 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc-CC---CCCCHHHHHHHHHHhC
Q 031871 87 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES-GK---AIPNQQILTKLERALG 144 (151)
Q Consensus 87 ~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~-G~---~~p~~~~l~kLa~~Lg 144 (151)
.+.+.-.+.|.. + ..|+|.+|+|+.+|+|..||...-. +. +..+...+...|..+|
T Consensus 197 ~L~~~erevl~L-~-~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~~a~~~g 256 (258)
T 3clo_A 197 ILSEREKEILRC-I-RKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMK 256 (258)
T ss_dssp SSCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 344444554544 4 5899999999999999999877543 21 3345556666666555
No 454
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=66.11 E-value=11 Score=28.01 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhc------CCc-CHHHHHHHhCCCHHHHHHH
Q 031871 89 PSELKKAIVQARND------KKL-TQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 89 ~~~~~~~Lk~~R~~------~gl-TQ~eLA~~lgis~s~Is~~ 124 (151)
...+...|+..-.. -.+ |..+||+.+|||+++|.+-
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReA 51 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREV 51 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34455555554332 236 8999999999999988764
No 455
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=66.11 E-value=7 Score=27.03 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=33.2
Q ss_pred cchhhhHHHHHhhccCCcchHHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHc
Q 031871 70 DTENLALLLSVLYCTDDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 126 (151)
Q Consensus 70 ~~~~~~~~~s~~~~~~~~~~~~~~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~ 126 (151)
+.+.|..++.+--+..+++ -..|++.. -.|+++++.+++-||++++++.=.+
T Consensus 31 see~F~LLlelS~IrSekI----I~ALrdyL-V~G~srkeaCe~~gV~~syfS~~L~ 82 (111)
T 3m8j_A 31 SEEQFFLLIGISSIHSDRV----ILAMKDYL-VSGHSRKDVCEKYQMNNGYFSTTLG 82 (111)
T ss_dssp CHHHHHHHHHHSCCCCHHH----HHHHHHHH-TTCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHH----HHHHHHHH-HcCCcHHHHHHHhCCCHHHHHHHHH
Confidence 3455665444444444443 33333332 2599999999999999999887433
No 456
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=66.07 E-value=2 Score=29.82 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.+.|..++|+.+|||++++..+-.++.
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 27 SATSVGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HhcCHHHHHHHhCCCchHHHHHcCCHH
Confidence 458999999999999999999866653
No 457
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=66.06 E-value=2.1 Score=30.14 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKAI 130 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~~ 130 (151)
.++|..++|+.+|||++++..+-.++..
T Consensus 39 ~~~t~~~Ia~~agvs~~t~Y~~F~~K~~ 66 (203)
T 3mnl_A 39 EAVQMRAVADRADVAVGTLYRYFPSKVH 66 (203)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred ccCCHHHHHHHcCCChhHHHHHcCCHHH
Confidence 4689999999999999999998766543
No 458
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=65.98 E-value=5.8 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=25.5
Q ss_pred HHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 99 ARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 99 ~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-+--.+.|..++|+.+|||+.+|..+-.++.
T Consensus 50 ~~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 50 AEGIHSVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp HHCSTTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HhCcccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3444568999999999999999999876654
No 459
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=65.95 E-value=6.6 Score=29.54 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCcCH--HHHHHHhCCCHHHHHHH
Q 031871 90 SELKKAIVQARNDKKLTQ--SQLAQLINEKPQVIQEY 124 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~glTQ--~eLA~~lgis~s~Is~~ 124 (151)
..+-..|..+.. .|+|+ .+||+.+|++++++++.
T Consensus 9 e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~ 44 (230)
T 1fx7_A 9 EMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQT 44 (230)
T ss_dssp HHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHH
Confidence 344444555443 37888 99999999999988876
No 460
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=65.61 E-value=11 Score=26.84 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCChhhHHhhhc
Q 031871 30 KVVNAARRAGADIETVRKSHA 50 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~ 50 (151)
+.-+.|++.|+++.|++.|+.
T Consensus 13 ~i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 345789999999999999986
No 461
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=65.50 E-value=3.5 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=24.1
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.+.|..++|+.+|||++++..+-.++.
T Consensus 26 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 53 (195)
T 3frq_A 26 PIEFTLSGVAKEVGLSRAALIQRFTNRD 53 (195)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3467999999999999999999977654
No 462
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=65.46 E-value=2.1 Score=30.18 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=24.7
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
+--.+.|..++|+.+|||+.+|..+-.++
T Consensus 34 ~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 34 FGFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred hCcccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 33457899999999999999999997765
No 463
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=65.45 E-value=5.3 Score=28.99 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=23.5
Q ss_pred cCHHHHHHHhCCCHHHHHHHHcCCCC
Q 031871 105 LTQSQLAQLINEKPQVIQEYESGKAI 130 (151)
Q Consensus 105 lTQ~eLA~~lgis~s~Is~~E~G~~~ 130 (151)
-|+.++|+.+|++.++|+++-+|+..
T Consensus 136 ~s~~eAa~~~Gvs~~tIs~~~~gk~k 161 (174)
T 1u3e_M 136 PSTKCACEELGLTRGKVTDVLKGHRI 161 (174)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHCcCHhHhHHHHcCCCC
Confidence 48999999999999999999999753
No 464
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=65.37 E-value=7.6 Score=27.59 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.0
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.+.|..++|+.+|||+.+|..+-.++.
T Consensus 33 ~~~~s~~~IA~~agvs~~t~Y~~F~sKe 60 (221)
T 3c2b_A 33 EKALTTSGLARAANCSKESLYKWFGDRD 60 (221)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 3568999999999999999999976653
No 465
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=65.27 E-value=3.4 Score=29.14 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=23.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 28 ~~~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 28 ARVSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp GGCCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred hhccHHHHHHHhCCCchhhheeCCCHH
Confidence 457999999999999999999866553
No 466
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=65.14 E-value=9.2 Score=27.23 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=23.0
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
-.+.|..++|+.+|||+.+|..+-.++
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAVYGHYKNK 55 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 356899999999999999999986544
No 467
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=65.08 E-value=4.3 Score=28.92 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.9
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.+.|..++|+.+|||+.++..+-.++.
T Consensus 41 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 68 (214)
T 2zb9_A 41 TAQLTFERVARVSGVSKTTLYKWWPSKG 68 (214)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 3468999999999999999999876554
No 468
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=65.02 E-value=2.2 Score=30.11 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=23.7
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.+.|..++|+.+|||++++..+-.++.
T Consensus 32 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 32 FQGASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3468999999999999999999866553
No 469
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=64.93 E-value=8.1 Score=28.96 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.8
Q ss_pred CCcCHHHHHHHhCCCHHHHHHH
Q 031871 103 KKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~ 124 (151)
-++|+.++|+.+|+|+++|++.
T Consensus 26 ~~~s~s~aA~~L~isq~avSr~ 47 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRI 47 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHH
Confidence 3588999999999999999885
No 470
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=64.82 E-value=6.1 Score=26.01 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=20.1
Q ss_pred cCCcCHHHHHHHh-CCCHHHHHHH
Q 031871 102 DKKLTQSQLAQLI-NEKPQVIQEY 124 (151)
Q Consensus 102 ~~glTQ~eLA~~l-gis~s~Is~~ 124 (151)
...+++.|||+.+ |++++++++.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~ 59 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDE 59 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHH
Confidence 5579999999999 5999999875
No 471
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=64.68 E-value=3.7 Score=28.76 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=23.1
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
--.+.|..++|+.+|||++++..+-.++
T Consensus 28 G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 28 GYENTTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred CcccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 3356899999999999999999875544
No 472
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=64.34 E-value=4.4 Score=28.57 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.3
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.+.|..++|+.+|||++++..+-.++.
T Consensus 43 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 71 (217)
T 3mvp_A 43 TYFNVTTNEIAKKADVSVGTLYAYFASKE 71 (217)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred CccccCHHHHHHHhCCChhHHHHHcCCHH
Confidence 33468999999999999999999876654
No 473
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=64.12 E-value=6.1 Score=27.76 Aligned_cols=29 Identities=3% Similarity=0.017 Sum_probs=24.2
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+-- +.|..++|+.+|||++++..+-.++.
T Consensus 32 ~G~-~~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 32 HGA-DASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HGG-GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCC-CCCHHHHHHHhCCchHHHHHHCCCHH
Confidence 344 78999999999999999999866543
No 474
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=64.10 E-value=5.4 Score=28.17 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.0
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+.++..+-.++.
T Consensus 28 ~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe 57 (197)
T 2hyt_A 28 RGYADTSMDDLTAQASLTRGALYHHFGDKK 57 (197)
T ss_dssp HCTTTCCHHHHHHHHTCCTTHHHHHHSSHH
T ss_pred hCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344568999999999999999999877654
No 475
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=63.98 E-value=9.3 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=24.7
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+.++..+-.++.
T Consensus 26 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (216)
T 3s5r_A 26 QGIAATTMAEIAASVGVNPAMIHYYFKTRD 55 (216)
T ss_dssp HCTTTCCHHHHHHTTTCCHHHHHHHCSSHH
T ss_pred cCcccCCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 333568999999999999999999866553
No 476
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=63.87 E-value=5.7 Score=28.75 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 96 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 96 Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+-.-+--.+.|..++|+.+|||+.+|..+-.++.
T Consensus 26 lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~sKe 59 (208)
T 3v6g_A 26 VIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLD 59 (208)
T ss_dssp HHHHHCTTCCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHhCcccCCHHHHHHHhCCCchhHHHHcCCHH
Confidence 3333445678999999999999999999876553
No 477
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=63.78 E-value=4.6 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=24.1
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
--.+.|..++|+++|||+.+|..+-.++-
T Consensus 25 Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe 53 (206)
T 1vi0_A 25 GYHQSQVSKIAKQAGVADGTIYLYFKNKE 53 (206)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred CcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 33567999999999999999999866553
No 478
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=63.62 E-value=7.7 Score=27.41 Aligned_cols=30 Identities=7% Similarity=-0.096 Sum_probs=24.8
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+.+|..+-.++.
T Consensus 23 ~G~~~ts~~~IA~~aGvs~gtlY~~F~sKe 52 (197)
T 2gen_A 23 HGVDATTIEMIRDRSGASIGSLYHHFGNKE 52 (197)
T ss_dssp HCTTTCCHHHHHHHHCCCHHHHHHHTCSHH
T ss_pred cCcccCCHHHHHHHHCCChHHHHHHCCCHH
Confidence 444567999999999999999999876553
No 479
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=63.33 E-value=7 Score=28.86 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCC---cCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 90 SELKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 90 ~~~~~~Lk~~R~~~g---lTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
..+-+.-.++-.++| +|..++|+.+|||+.+|..+-.++.
T Consensus 46 ~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 46 LAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344444445555555 6999999999999999999876654
No 480
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=63.29 E-value=11 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 031871 106 TQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 148 (151)
Q Consensus 106 TQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa~~Lgv~l~ 148 (151)
|....|+++|+|+++||+- +.+|.+.||+++=
T Consensus 17 s~s~AA~~L~isq~avS~~-----------i~~LE~~lg~~Lf 48 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITRQ-----------MQALEADLGVVLL 48 (294)
T ss_dssp SHHHHHHHHTCCHHHHHHH-----------HHHHHHHHTSCCB
T ss_pred CHHHHHHHhCCCcchHHHH-----------HHHHHHHHCCEEE
Confidence 6778899999999999974 5667777777653
No 481
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=63.26 E-value=1.9 Score=30.53 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
.++|..++|+.+|||++++..+-.++.
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 568999999999999999998766543
No 482
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=63.21 E-value=4.8 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=23.9
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
+--.+.|..++|+.+|||+++|..+-.++
T Consensus 30 ~G~~~~s~~~IA~~agvsk~tlY~yF~sK 58 (199)
T 3crj_A 30 HGYADLTIQRIADEYGKSTAAVHYYYDTK 58 (199)
T ss_dssp HTTTTCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred cCcccCCHHHHHHHhCCChhHHhhhcCCH
Confidence 44456899999999999999999875544
No 483
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=63.12 E-value=3.4 Score=29.79 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.5
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
-.+.|..++|+.+|||+.+|..|-.++.
T Consensus 42 ~~~~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 42 AQRFTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp -CCCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccccHHHHHHHhCCCCchHHHhCCCHH
Confidence 3568999999999999999999866553
No 484
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=63.01 E-value=6.6 Score=28.47 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=28.6
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHH
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLE 140 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~~~p~~~~l~kLa 140 (151)
-.+.|..++|+.+|||+.+|..+-..+..+=...+....
T Consensus 58 ~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~~~~~ 96 (225)
T 2id3_A 58 FDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMA 96 (225)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998766444333333333
No 485
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=63.00 E-value=10 Score=26.65 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 93 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
.+.+.......|.+..++|+.+|+|+.++.++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l~~~ 180 (184)
T 3rqi_A 145 WEHIQRVLAENNNNISATARALNMHRRTLQRKLAKK 180 (184)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHCC-
T ss_pred HHHHHHHHHhccccHHHHHHHcCCcHHHHHHHHHhc
Confidence 445666666779999999999999999999987754
No 486
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=62.95 E-value=5.9 Score=28.01 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=23.0
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 104 KLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 104 glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+.|..++|+.+|||+.+|..+-.++.
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 68999999999999999999876553
No 487
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=62.75 E-value=12 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.4
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
--.++|..++|+.+|||+++|..+-..+
T Consensus 65 G~~~~Ti~~IA~~AGvs~~t~Y~yF~sK 92 (260)
T 2of7_A 65 GYEATTVEQIAERAEVSPSTVLRYFPTR 92 (260)
T ss_dssp CSTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred CcccccHHHHHHHhCCChHHHHHHcCCH
Confidence 3456899999999999999999985543
No 488
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=62.68 E-value=4.3 Score=24.03 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCChhhHHhhhcCCCccCC
Q 031871 30 KVVNAARRAGADIETVRKSHAGTNKAAS 57 (151)
Q Consensus 30 ~~~~~a~r~g~~v~t~~k~~~g~~~~~~ 57 (151)
+...+|++.|++.+++.+|+.|...+..
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~~~~~l 42 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCe
Confidence 5677999999999999999998776543
No 489
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=62.60 E-value=6 Score=29.88 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=31.5
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALGV 145 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G----~~~p~~~~l~kLa~~Lgv 145 (151)
..|+|.+|+|+.+|+|..||...-+. -..-+...+..+|..+|+
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 235 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGL 235 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 57999999999999999999876542 123455556666655553
No 490
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=62.56 E-value=3.6 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 103 KKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 103 ~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
.+.|..++|+.+|||++++..+-.++
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (183)
T 1zk8_A 27 QEVTLASLAQTLGVRSPSLYNHVKGL 52 (183)
T ss_dssp GGCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred cccCHHHHHHHcCCCchHHHHHcCCH
Confidence 45899999999999999999875554
No 491
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=62.43 E-value=5.8 Score=26.43 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=18.1
Q ss_pred c-CHHHHHHHhCCCHHHHHHH
Q 031871 105 L-TQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 105 l-TQ~eLA~~lgis~s~Is~~ 124 (151)
+ |..+||+.+|+|+++|.+-
T Consensus 43 lps~~eLa~~lgVSr~tVr~a 63 (102)
T 2b0l_A 43 LLVASKIADRVGITRSVIVNA 63 (102)
T ss_dssp EECHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 5 9999999999999998864
No 492
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=62.35 E-value=5.1 Score=25.16 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=22.5
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESG 127 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G 127 (151)
..-||.+|.|+.+||+.+++.++-+.
T Consensus 14 K~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred cceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 45589999999999999999998654
No 493
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=62.27 E-value=10 Score=25.09 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCcCHHHHHHHhC----CCHHHHHHH
Q 031871 93 KKAIVQARNDKKLTQSQLAQLIN----EKPQVIQEY 124 (151)
Q Consensus 93 ~~~Lk~~R~~~glTQ~eLA~~lg----is~s~Is~~ 124 (151)
...|..+...-++|+.|||+.++ ++++||+.+
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~ 48 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTL 48 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHH
Confidence 44556666667899999999997 588888876
No 494
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=62.13 E-value=16 Score=27.92 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHh----cCCcCHHHHHHHhCCCHHHHHHHH
Q 031871 90 SELKKAIVQARN----DKKLTQSQLAQLINEKPQVIQEYE 125 (151)
Q Consensus 90 ~~~~~~Lk~~R~----~~glTQ~eLA~~lgis~s~Is~~E 125 (151)
..+.+.++-+.. ..++|..|||+.+|+++++++++-
T Consensus 11 ~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l 50 (257)
T 2g7u_A 11 QSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRIL 50 (257)
T ss_dssp HHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 344444444432 357999999999999999999974
No 495
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=62.11 E-value=3.6 Score=28.58 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=23.0
Q ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 101 NDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 101 ~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
--.+.|..++|+.+|||++++..+-.++
T Consensus 27 G~~~~t~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 27 GFSGVGLNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHTTTCSCH
T ss_pred CcccCCHHHHHHHhCCChhhHHHHcCCH
Confidence 3346799999999999999999875544
No 496
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=61.99 E-value=7.3 Score=28.65 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=25.0
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+++|..+-..+.
T Consensus 39 ~G~~~~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 39 RGIREITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp HCSTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred CCcccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 444578999999999999999999876553
No 497
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=61.94 E-value=3.5 Score=28.58 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=22.7
Q ss_pred cCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 102 DKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 102 ~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
-.++|..++|+++|||++++..+-.++
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (196)
T 3col_A 28 PAGVSTTKVAKRVGIAQSNVYLYFKNK 54 (196)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred cccCCHHHHHHHhCCcHHHHHHHhCCH
Confidence 345899999999999999999875554
No 498
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=61.92 E-value=5.3 Score=28.44 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=24.5
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGKA 129 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~~ 129 (151)
+--.+.|..++|+.+|||+.+|..+-.++.
T Consensus 25 ~G~~~~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 25 SGLEGASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp HCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hChhhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 334568999999999999999999866553
No 499
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=61.75 E-value=11 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHH
Q 031871 94 KAIVQARNDKKLTQSQLAQLINEKPQVIQEY 124 (151)
Q Consensus 94 ~~Lk~~R~~~glTQ~eLA~~lgis~s~Is~~ 124 (151)
..|..+.....+|..+||+.+|+|++||.+-
T Consensus 9 ~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~ 39 (321)
T 1bia_A 9 KLIALLANGEFHSGEQLGETLGMSRAAINKH 39 (321)
T ss_dssp HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHCCCHHHHHHH
Confidence 3345555556799999999999999999774
No 500
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=61.75 E-value=9.1 Score=27.12 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=24.3
Q ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHcCC
Q 031871 100 RNDKKLTQSQLAQLINEKPQVIQEYESGK 128 (151)
Q Consensus 100 R~~~glTQ~eLA~~lgis~s~Is~~E~G~ 128 (151)
+--.+.|..++|+.+|||+.+|..+-.++
T Consensus 27 ~G~~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2xdn_A 27 RGVARTTLADIAELAGVTRGAIYWHFNNK 55 (210)
T ss_dssp HCSTTCCHHHHHHHHTCCTTHHHHHCSSH
T ss_pred cCcccCcHHHHHHHHCCChHHHHHHhCCH
Confidence 34467899999999999999999986554
Done!