BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031874
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 5 LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 63
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS S
Sbjct: 276 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHAS 335
Query: 64 SIYNYECGSEPLIQLNEILQRAPXXXXXXXXXXXXXXCCLALVDAD 109
+YE L L E Q+ C +ALV D
Sbjct: 336 LKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHD 381
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 64
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L S S
Sbjct: 262 LREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLXVESHRSL 321
Query: 65 IYNYECGSEPLIQLNEILQRAPXXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFE 124
+YE L QL E P C + L++A A A +++ Y
Sbjct: 322 RDDYEVSCPELDQLVEAALAVPGVYGSRXTGGGFGGCTVTLLEASAAPHAXRHIQEHYGG 381
Query: 125 LQPELASQLNADSAVLIC 142
SQ AD A ++C
Sbjct: 382 TATFYLSQ-AADGAKVLC 398
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+EV E ++L P K + EN RV + +A K GN ++ GK+++ + NYE
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277
Query: 70 CGSEPLIQLNEILQRAPXXXX--XXXXXXXXXXCCLALVDADRAEEAASYVRSEYFELQP 127
+ +L+ ++RA +ALVD + AE + EY + P
Sbjct: 278 VSCK---ELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFP 334
Query: 128 ELASQLNADSAVLICKPGDCARV 150
A I +P D +
Sbjct: 335 WKARH-------FIVEPSDGVGI 350
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 12/143 (8%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+EV E +L P K + EN RV + +A K G+ + GK+++ + NY
Sbjct: 220 KEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYR 279
Query: 70 CGSEPLIQLNEILQRAP--XXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFELQP 127
E +L+ +++A +ALVD D+A+ + EY
Sbjct: 280 VSCE---ELDFFVKKAXELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYL---- 332
Query: 128 ELASQLNADSAVLICKPGDCARV 150
++ + + + KP D V
Sbjct: 333 ---AKFSWKAKYFVVKPSDGVGV 352
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNSQ-------DFGKLISASGLSSIYNYECGSEPLI 76
L +RA+H ++E+ RV K L+ S DFG+L++ S S YEC I
Sbjct: 382 LYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSC---I 438
Query: 77 QLNEI 81
+ N+I
Sbjct: 439 ETNQI 443
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNSQ-------DFGKLISASGLSSIYNYECGSEPLI 76
L +RA+H ++E+ RV K L+ S DFG+L++ S S YEC I
Sbjct: 367 LYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSC---I 423
Query: 77 QLNEI 81
+ N+I
Sbjct: 424 ETNQI 428
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 16/136 (11%)
Query: 24 LAKRAEHYFTENRRV---AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNE 80
L +RA+H ++E RV K E Q G+L++ S +S YEC L QL +
Sbjct: 348 LYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVD 407
Query: 81 ILQRAPXXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFE-----LQPELASQLNA 135
I ++ C +++V AD+ + V Y++ L PE
Sbjct: 408 ICRKF-GAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPE------- 459
Query: 136 DSAVLICKPGDCARVI 151
++ KPG A V+
Sbjct: 460 KQSLFATKPGGGALVL 475
>pdb|1YBI|A Chain A, Crystal Structure Of Ha33a, A Neurotoxin-Associated
Protein From Clostridium Botulinum Type A
pdb|1YBI|B Chain B, Crystal Structure Of Ha33a, A Neurotoxin-Associated
Protein From Clostridium Botulinum Type A
Length = 288
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRA 85
VA+ L+ NS +I +S + N+ C P++ LN+++Q+
Sbjct: 118 VARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQV 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,984,231
Number of Sequences: 62578
Number of extensions: 126594
Number of successful extensions: 421
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)