Query 031874
Match_columns 151
No_of_seqs 101 out of 1029
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02865 galactokinase 100.0 4.4E-38 9.5E-43 269.2 16.7 149 3-151 275-423 (423)
2 COG0153 GalK Galactokinase [Ca 100.0 9.2E-38 2E-42 261.8 16.0 142 3-151 246-389 (390)
3 PTZ00290 galactokinase; Provis 100.0 2E-34 4.3E-39 249.1 15.8 134 11-151 315-456 (468)
4 PRK05101 galactokinase; Provis 100.0 2.1E-33 4.7E-38 237.7 16.8 142 3-151 240-382 (382)
5 PRK05322 galactokinase; Provis 100.0 1.3E-31 2.9E-36 227.1 16.9 142 3-151 245-387 (387)
6 PLN02521 galactokinase 100.0 4.9E-32 1.1E-36 236.0 13.7 129 22-151 359-494 (497)
7 TIGR00131 gal_kin galactokinas 100.0 3.1E-31 6.7E-36 224.4 15.4 142 3-151 242-386 (386)
8 PRK00555 galactokinase; Provis 100.0 6.6E-31 1.4E-35 221.3 17.2 141 3-151 222-362 (363)
9 PRK03817 galactokinase; Provis 100.0 2.1E-27 4.5E-32 198.6 17.3 125 19-151 226-350 (351)
10 KOG0631 Galactokinase [Carbohy 99.9 1.3E-22 2.9E-27 173.6 11.0 128 22-151 353-487 (489)
11 COG1577 ERG12 Mevalonate kinas 99.7 4.2E-17 9.2E-22 134.9 12.3 91 27-119 201-293 (307)
12 PTZ00298 mevalonate kinase; Pr 99.7 8.7E-16 1.9E-20 127.7 15.4 87 37-125 226-313 (328)
13 PF08544 GHMP_kinases_C: GHMP 99.7 1.4E-16 3.1E-21 107.1 8.6 82 41-123 1-84 (85)
14 PLN02677 mevalonate kinase 99.7 1.6E-15 3.5E-20 129.1 14.1 100 38-150 272-381 (387)
15 TIGR00549 mevalon_kin mevalona 99.6 1.2E-15 2.6E-20 122.9 10.9 68 36-105 206-273 (273)
16 PRK03926 mevalonate kinase; Pr 99.6 1.1E-14 2.4E-19 119.2 15.5 97 38-150 201-298 (302)
17 TIGR01220 Pmev_kin_Gr_pos phos 99.6 1.7E-14 3.7E-19 121.5 12.9 89 30-120 249-344 (358)
18 COG2605 Predicted kinase relat 99.6 4.2E-14 9.1E-19 115.6 12.1 92 27-121 221-313 (333)
19 PRK13412 fkp bifunctional fuco 99.6 5.2E-14 1.1E-18 130.4 14.1 81 38-120 868-950 (974)
20 KOG1511 Mevalonate kinase MVK/ 99.4 4.7E-12 1E-16 105.7 12.3 86 52-150 293-379 (397)
21 PRK01212 homoserine kinase; Pr 99.2 2E-10 4.3E-15 94.1 11.1 107 30-151 193-301 (301)
22 PLN02451 homoserine kinase 99.2 4.8E-10 1E-14 95.1 12.2 106 34-150 257-364 (370)
23 PTZ00299 homoserine kinase; Pr 99.0 3.5E-09 7.5E-14 88.9 10.2 106 30-150 201-321 (336)
24 COG0083 ThrB Homoserine kinase 98.9 1.9E-08 4.1E-13 83.2 11.6 109 28-151 187-297 (299)
25 PRK03188 4-diphosphocytidyl-2- 98.9 9.7E-09 2.1E-13 84.3 8.8 96 37-151 197-295 (300)
26 TIGR00191 thrB homoserine kina 98.8 2.5E-08 5.5E-13 82.0 10.3 106 31-150 194-301 (302)
27 PRK00128 ipk 4-diphosphocytidy 98.7 4.3E-08 9.3E-13 79.8 6.7 76 38-120 194-271 (286)
28 PRK02534 4-diphosphocytidyl-2- 98.6 2E-07 4.4E-12 77.0 8.8 100 35-150 208-310 (312)
29 TIGR01920 Shik_kin_archae shik 98.5 4.2E-07 9E-12 73.7 8.6 73 36-120 181-253 (261)
30 PRK01123 shikimate kinase; Pro 98.4 2.6E-06 5.6E-11 69.6 9.8 89 37-150 192-281 (282)
31 TIGR00144 beta_RFAP_syn beta-R 98.4 7.5E-06 1.6E-10 68.4 12.7 103 33-151 215-324 (324)
32 COG1907 Predicted archaeal sug 98.4 1.5E-05 3.3E-10 65.6 13.5 124 10-150 181-310 (312)
33 PRK14613 4-diphosphocytidyl-2- 98.3 2.9E-06 6.3E-11 70.0 7.7 79 38-124 208-289 (297)
34 TIGR01219 Pmev_kin_ERG8 phosph 98.1 9.2E-05 2E-09 64.7 12.9 73 49-123 353-430 (454)
35 TIGR00154 ispE 4-diphosphocyti 97.9 4.4E-05 9.6E-10 62.8 7.4 75 42-122 200-275 (293)
36 PRK14614 4-diphosphocytidyl-2- 97.9 2.1E-05 4.6E-10 64.2 5.2 46 72-120 222-268 (280)
37 PRK14612 4-diphosphocytidyl-2- 97.8 3E-05 6.5E-10 63.1 4.5 75 37-121 189-264 (276)
38 KOG1537 Homoserine kinase [Ami 97.8 0.00017 3.7E-09 59.1 8.7 106 30-149 240-351 (355)
39 PRK14616 4-diphosphocytidyl-2- 97.7 0.00013 2.8E-09 59.7 7.1 80 38-125 195-277 (287)
40 PRK14615 4-diphosphocytidyl-2- 97.6 0.00011 2.3E-09 60.6 5.3 47 71-120 239-286 (296)
41 PRK14609 4-diphosphocytidyl-2- 97.2 0.00029 6.3E-09 57.4 3.7 45 61-108 208-252 (269)
42 PRK14608 4-diphosphocytidyl-2- 97.2 0.00078 1.7E-08 55.3 5.4 47 71-120 229-277 (290)
43 PRK14610 4-diphosphocytidyl-2- 96.6 0.0039 8.4E-08 51.1 5.3 58 60-120 210-269 (283)
44 PRK14611 4-diphosphocytidyl-2- 96.1 0.016 3.5E-07 47.1 5.9 67 35-108 188-254 (275)
45 TIGR01240 mevDPdecarb diphosph 94.4 0.98 2.1E-05 37.6 11.5 83 37-122 212-304 (305)
46 KOG4644 L-fucose kinase [Carbo 94.3 0.61 1.3E-05 42.0 10.5 93 26-120 821-920 (948)
47 PRK00343 ipk 4-diphosphocytidy 94.1 0.1 2.3E-06 42.4 5.1 46 71-121 216-262 (271)
48 COG1947 IspE 4-diphosphocytidy 93.1 0.16 3.5E-06 42.1 4.6 47 71-120 224-271 (289)
49 PRK00650 4-diphosphocytidyl-2- 92.3 0.33 7.1E-06 40.2 5.4 49 72-123 206-259 (288)
50 COG1685 Archaeal shikimate kin 90.6 3.5 7.6E-05 34.0 9.6 65 44-120 195-259 (278)
51 PLN02407 diphosphomevalonate d 89.7 3.8 8.2E-05 34.9 9.5 86 36-123 235-332 (343)
52 PRK05905 hypothetical protein; 83.8 1.2 2.5E-05 36.3 3.2 31 72-106 223-253 (258)
53 PF03460 NIR_SIR_ferr: Nitrite 81.0 5 0.00011 25.3 4.8 48 70-120 21-68 (69)
54 COG3407 MVD1 Mevalonate pyroph 79.3 38 0.00083 28.7 11.5 92 26-123 208-309 (329)
55 COG4542 PduX Protein involved 62.8 69 0.0015 26.6 8.3 66 39-110 200-265 (293)
56 PF03991 Prion_octapep: Copper 56.6 5.4 0.00012 15.4 0.5 6 94-99 2-7 (8)
57 KOG2833 Mevalonate pyrophospha 53.0 1.5E+02 0.0032 25.5 10.3 100 20-123 220-330 (395)
58 COG0024 Map Methionine aminope 52.3 41 0.00088 27.5 5.4 39 68-106 34-72 (255)
59 PF15573 Imm27: Immunity prote 47.2 33 0.00072 27.8 4.0 41 22-62 17-60 (259)
60 PF03118 RNA_pol_A_CTD: Bacter 45.8 23 0.0005 22.6 2.5 44 39-82 21-64 (66)
61 COG3064 TolA Membrane protein 43.7 24 0.00053 30.0 2.9 28 92-119 39-68 (387)
62 PRK07758 hypothetical protein; 42.4 32 0.0007 24.0 2.9 48 39-87 44-91 (95)
63 COG2221 DsrA Dissimilatory sul 41.1 51 0.0011 27.9 4.4 47 70-119 42-88 (317)
64 PF06698 DUF1192: Protein of u 39.6 74 0.0016 20.2 4.0 18 5-22 18-35 (59)
65 PRK10548 flagellar biosynthesi 35.5 1.3E+02 0.0028 21.7 5.3 52 19-70 55-108 (121)
66 TIGR01743 purR_Bsub pur operon 33.5 2.7E+02 0.0059 22.8 8.1 50 74-125 41-92 (268)
67 PRK00411 cdc6 cell division co 31.8 3E+02 0.0065 22.8 11.0 113 7-121 269-387 (394)
68 COG1703 ArgK Putative periplas 31.6 2.4E+02 0.0051 24.0 6.9 86 38-146 4-91 (323)
69 PF15136 UPF0449: Uncharacteri 31.5 1.4E+02 0.0031 20.8 4.8 38 22-59 53-92 (97)
70 KOG3304 Surfeit family protein 31.0 48 0.001 24.6 2.4 9 94-102 2-10 (148)
71 COG1916 Uncharacterized homolo 30.7 1.2E+02 0.0026 26.4 5.1 78 10-88 27-113 (388)
72 PRK05377 fructose-1,6-bisphosp 30.1 1.2E+02 0.0026 25.3 4.9 45 71-123 120-164 (296)
73 KOG1481 Cysteine synthase [Ami 29.1 1.4E+02 0.0031 25.3 5.2 35 64-104 195-229 (391)
74 COG3890 ERG8 Phosphomevalonate 29.0 3.6E+02 0.0077 22.8 12.1 32 77-109 276-307 (337)
75 cd06831 PLPDE_III_ODC_like_AZI 27.7 1E+02 0.0022 26.3 4.3 42 78-126 193-235 (394)
76 PF13549 ATP-grasp_5: ATP-gras 26.9 3.2E+02 0.0069 21.6 6.8 61 66-127 20-93 (222)
77 PF12687 DUF3801: Protein of u 26.8 1.9E+02 0.0042 22.6 5.4 70 51-124 22-92 (204)
78 PF07820 TraC: TraC-like prote 25.5 2.3E+02 0.0051 19.6 5.0 50 30-82 6-55 (92)
79 PRK05182 DNA-directed RNA poly 24.9 73 0.0016 26.6 2.9 57 30-87 249-305 (310)
80 PF09440 eIF3_N: eIF3 subunit 24.9 2.8E+02 0.0061 20.2 7.5 65 19-83 62-131 (133)
81 PRK00068 hypothetical protein; 24.1 1.5E+02 0.0033 28.8 5.1 29 38-66 937-965 (970)
82 TIGR02049 gshA_ferroox glutama 23.7 93 0.002 27.1 3.3 32 109-148 236-268 (403)
83 PF06757 Ins_allergen_rp: Inse 23.7 3E+02 0.0065 20.7 5.9 98 11-110 6-118 (179)
84 COG4710 Predicted DNA-binding 23.7 1.5E+02 0.0034 19.7 3.6 19 20-38 12-30 (80)
85 cd06460 M32_Taq Peptidase fami 23.5 2.1E+02 0.0046 24.8 5.5 63 3-74 225-298 (396)
86 PRK04181 4-diphosphocytidyl-2- 23.5 69 0.0015 25.9 2.4 26 72-107 230-255 (257)
87 PF05400 FliT: Flagellar prote 23.4 2E+02 0.0043 18.0 4.6 24 42-65 2-25 (84)
88 smart00345 HTH_GNTR helix_turn 23.4 1.1E+02 0.0023 17.7 2.7 34 62-97 24-57 (60)
89 PRK11199 tyrA bifunctional cho 23.0 2.1E+02 0.0046 24.2 5.4 45 39-83 325-369 (374)
90 PF01399 PCI: PCI domain; Int 22.8 2.2E+02 0.0048 18.4 6.3 30 66-96 68-97 (105)
91 PF04375 HemX: HemX; InterPro 22.7 4.8E+02 0.01 22.2 7.7 58 27-84 268-327 (372)
92 PF06153 DUF970: Protein of un 22.5 1.6E+02 0.0035 20.9 3.9 52 73-125 11-67 (109)
93 PF10407 Cytokin_check_N: Cdc1 22.5 2.4E+02 0.0052 18.6 5.2 40 103-147 6-46 (73)
94 PF02043 Bac_chlorC: Bacterioc 22.4 2.6E+02 0.0056 18.9 4.8 40 50-91 13-53 (82)
95 TIGR02027 rpoA DNA-directed RN 22.2 93 0.002 25.8 3.0 56 31-87 236-291 (297)
96 PF09109 Xol-1_GHMP-like: Swit 21.7 3.4E+02 0.0073 21.3 5.7 94 52-151 69-167 (191)
97 COG3143 CheZ Chemotaxis protei 21.6 3.6E+02 0.0079 21.3 5.9 78 4-82 34-117 (217)
98 COG2511 GatE Archaeal Glu-tRNA 21.6 3.2E+02 0.0069 25.1 6.3 72 67-150 353-428 (631)
99 cd07922 CarBa CarBa is the A s 21.4 87 0.0019 21.1 2.2 28 29-56 28-55 (81)
100 PF00732 GMC_oxred_N: GMC oxid 21.3 11 0.00024 30.0 -2.7 12 93-104 5-16 (296)
101 COG2410 Predicted nuclease (RN 20.7 2.1E+02 0.0046 22.2 4.3 58 49-106 108-169 (178)
102 COG1867 TRM1 N2,N2-dimethylgua 20.6 3.6E+02 0.0078 23.4 6.2 46 67-119 328-374 (380)
103 PRK09213 pur operon repressor; 20.5 4.8E+02 0.01 21.4 7.8 46 78-124 46-93 (271)
104 PF07894 DUF1669: Protein of u 20.5 2.1E+02 0.0046 23.8 4.7 47 32-84 19-65 (284)
105 PF13552 DUF4127: Protein of u 20.4 6.2E+02 0.013 22.5 9.1 120 5-149 148-269 (497)
106 PF08060 NOSIC: NOSIC (NUC001) 20.3 1.4E+02 0.0031 18.0 2.8 31 50-80 9-39 (53)
107 cd08779 Death_PIDD Death Domai 20.1 1.6E+02 0.0034 19.7 3.3 30 49-78 4-33 (86)
No 1
>PLN02865 galactokinase
Probab=100.00 E-value=4.4e-38 Score=269.17 Aligned_cols=149 Identities=74% Similarity=1.217 Sum_probs=144.1
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
++|||++.+++.+++..+++.+++|++|+++|+.||.+++++|+++|++.||++|++||.|||++|++||||+|.|++.+
T Consensus 275 ~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a 354 (423)
T PLN02865 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEIL 354 (423)
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 83 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 83 ~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
++.+|++|+||||||||||+++|++.+.++++++++.+.|++++|++.++++.++.+|+++|++||+++
T Consensus 355 ~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 355 LKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred HhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 986799999999999999999999999999999999999999999988889999999999999999975
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-38 Score=261.83 Aligned_cols=142 Identities=37% Similarity=0.555 Sum_probs=136.4
Q ss_pred CCcCCCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNE 80 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l--~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~ 80 (151)
++|||++.++|.++.+.+ ++..++|++|+++|++|+.++++||+++|++.||++|++||.||+++|+|||||+|+|++
T Consensus 246 ~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve 325 (390)
T COG0153 246 KSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVE 325 (390)
T ss_pred hhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 679999999999999998 588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 81 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 81 ~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
++....|++||||||||||||+|+|++.++++++++.+.+.|++. +|+++.+|+++|++|++++
T Consensus 326 ~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~-------~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 326 IALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV-------TGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred HHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhh-------cCccccEEEEeccCCcccc
Confidence 998778999999999999999999999999999999999999986 5999999999999999874
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2e-34 Score=249.14 Aligned_cols=134 Identities=20% Similarity=0.309 Sum_probs=123.3
Q ss_pred HHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 11 EVY-EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWK-------SGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 11 ~~l-~~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~-------~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
.++ ..+...+++.+++|++|+++|+.||.+++++|+ ++|+..||++|++||.+|+++|+|||||+|.|++.+
T Consensus 315 ~~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~ 394 (468)
T PTZ00290 315 VAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELI 394 (468)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 355 377788999999999999999999999999995 566999999999999999999999999999999987
Q ss_pred HhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 83 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 83 ~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
....|++||||||||||||+|+|++++..+++++++.+.|.++ ||.++.+|.++|++||+++
T Consensus 395 ~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~-------~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 395 NEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR-------FGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred HHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCcEEE
Confidence 5548999999999999999999999999999999999999885 6999999999999999974
No 4
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=2.1e-33 Score=237.67 Aligned_cols=142 Identities=30% Similarity=0.437 Sum_probs=134.1
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
..|++++.+++....+.|++..++|+.|+++|+.||.+++++|+++|++.||++|++||.+|++.|+||||++|.|++.+
T Consensus 240 ~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a 319 (382)
T PRK05101 240 KALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIV 319 (382)
T ss_pred HhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHH
Confidence 36899999999999899999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhCCCC-ceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 83 QRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 83 ~~~~Ga-~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
++.+|+ +||||||||||||+|+|++++..+++++++.+.|+++ ++.++.+|+++|++||++.
T Consensus 320 ~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 382 (382)
T PRK05101 320 KAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAK-------TGLKETFYVCKASQGAGQC 382 (382)
T ss_pred HhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCeEEEEecCCCcccC
Confidence 985598 5889999999999999999999999999999999986 5999999999999999974
No 5
>PRK05322 galactokinase; Provisional
Probab=99.98 E-value=1.3e-31 Score=227.13 Aligned_cols=142 Identities=35% Similarity=0.532 Sum_probs=134.5
Q ss_pred CCcCCCCHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEI 81 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l-~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~ 81 (151)
++|||++.+++..+.+.+ ++..++|+.|++.|+.|+..++.+|+++|++.||++|++||.+|++.|++|+|++|.|++.
T Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~ 324 (387)
T PRK05322 245 KSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEA 324 (387)
T ss_pred cchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHH
Confidence 478999999999998888 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 82 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 82 a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
++..+|++|+||||||||||+++|++.+..+++.+.|.+.|+++ ||.++.+|+++|++|||++
T Consensus 325 a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 325 AWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK-------IGYAASFYVAEIGDGAREL 387 (387)
T ss_pred HHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCcccC
Confidence 97448999999999999999999999999999999999999986 6999999999999999975
No 6
>PLN02521 galactokinase
Probab=99.98 E-value=4.9e-32 Score=236.02 Aligned_cols=129 Identities=26% Similarity=0.439 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccC
Q 031874 22 PTLAKRAEHYFTENRRVAKGLEAWKSG-----NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 96 (151)
Q Consensus 22 ~~~~~r~~~~v~E~~rv~~~~~al~~~-----d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGa 96 (151)
+.+++|++|+++|+.||.+++++|+++ ++..||++|++||.+++++|+||||++|.|++++++ .|++|+|||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGa 437 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGA 437 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCC
Confidence 488999999999999999999999886 399999999999999999999999999999999998 79999999999
Q ss_pred CCCceEEEEeccccHHHHHHHHHHHhHhhch--hHhhhcCCCceEEEeecCCceeeC
Q 031874 97 GFRGCCLALVDADRAEEAASYVRSEYFELQP--ELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 97 G~GG~vialv~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
|||||+|+|++++..+++++.+.+.|++++| .-.+.++.++.+|+++|++||+++
T Consensus 438 G~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 494 (497)
T PLN02521 438 GWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAIL 494 (497)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEe
Confidence 9999999999999999999999999998752 233457899999999999999973
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.97 E-value=3.1e-31 Score=224.35 Aligned_cols=142 Identities=26% Similarity=0.385 Sum_probs=130.7
Q ss_pred CCcCCCCHHHHH---HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHH
Q 031874 3 PRLCNVEEEVYE---AHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLN 79 (151)
Q Consensus 3 ~~L~~~~~~~l~---~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~ 79 (151)
+.||++..+++. +.+..+++..++|+.|+++|+.||.+++++|+++|++.||++|+++|.+|++.|++|||++|.++
T Consensus 242 ~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv 321 (386)
T TIGR00131 242 GALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELV 321 (386)
T ss_pred cchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHH
Confidence 378999888887 55778899999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 80 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 80 ~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
+.+...+||+|+||||||||||+|+|++++.++++++++.+.|+++ +|.++.+|++.+++|++++
T Consensus 322 ~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 386 (386)
T TIGR00131 322 CSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK-------TGLELTFYVIVSKPGAGSC 386 (386)
T ss_pred HHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEEECCCcCCC
Confidence 8864448999999999999999999999999999999999999765 6999999999999999864
No 8
>PRK00555 galactokinase; Provisional
Probab=99.97 E-value=6.6e-31 Score=221.29 Aligned_cols=141 Identities=32% Similarity=0.385 Sum_probs=133.3
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
++||++..+++.......++..++|+.|+++|+.|+.+++++|.++|++.||++|+++|.++|+.|+||+|++|.|++.+
T Consensus 222 ~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a 301 (363)
T PRK00555 222 SSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSA 301 (363)
T ss_pred cchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHH
Confidence 46888988888887777789999999999999999999999999999999999999999999989999999999999999
Q ss_pred HhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 83 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 83 ~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
++ .|++|+||||||||||+++|++++..+++.+.+.+.|+++ ++.++.+|+++|++||+++
T Consensus 302 ~~-~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 302 VR-AGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTA-------GYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred Hh-cCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHc-------cCCCCcEEEEecCCCcccC
Confidence 98 8999999999999999999999998999999999999986 5889999999999999985
No 9
>PRK03817 galactokinase; Provisional
Probab=99.95 E-value=2.1e-27 Score=198.60 Aligned_cols=125 Identities=34% Similarity=0.496 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCC
Q 031874 19 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGF 98 (151)
Q Consensus 19 ~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~ 98 (151)
.+++.+++|+.|+++|+.|+..++.+|+++|++.||++|++||+++++.|++|+|++|.|++.+++ .|++|+|||||||
T Consensus 226 ~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~ 304 (351)
T PRK03817 226 KLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGF 304 (351)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCC
Confidence 578889999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred CceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 99 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 99 GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
|||+++|++++..+++++.+.+.|.+. ++..+.+|++.+++|++++
T Consensus 305 Gg~vlal~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 305 GGSAIALVDKGKFESIGEELLEEYKKR-------FGIDPKYFVVESSDGVRKI 350 (351)
T ss_pred CeEEEEEEchHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCceeC
Confidence 999999999999999999999999775 5888999999999999985
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.3e-22 Score=173.61 Aligned_cols=128 Identities=33% Similarity=0.508 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeecc
Q 031874 22 PTLAKRAEHYFTENRRVAKGLEAWKSGN------SQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 95 (151)
Q Consensus 22 ~~~~~r~~~~v~E~~rv~~~~~al~~~d------~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tG 95 (151)
.++++|+.|++.|+.|+.++..++.+.. +..||+|||+||.|.+.+|++||||+|+|+++++. +|.+|+|+||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTG 431 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeec
Confidence 4567899999999999999999887642 66789999999999999999999999999999999 7889999999
Q ss_pred CCCCceEEEEeccccHHHHHHHHHHHhHh-hchhHhhhcCCCceEEEeecCCceeeC
Q 031874 96 AGFRGCCLALVDADRAEEAASYVRSEYFE-LQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 96 aG~GG~vialv~~~~~~~~~~~l~~~y~~-~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
+|||||++++++.+..+.+.++++..|++ .+|++.+.- .+..++.+.|+.|+.++
T Consensus 432 aGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~-~k~~~~~skp~~g~~l~ 487 (489)
T KOG0631|consen 432 AGWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDE-LKKALIVSKPAAGVLLL 487 (489)
T ss_pred cccccceeeeccccchHHHHHhhhhhhhccccchhhhch-hhceEEEecCchhhhhc
Confidence 99999999999999999999998877775 458888763 67778888899988753
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.73 E-value=4.2e-17 Score=134.88 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=74.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEE
Q 031874 27 RAEHYFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 105 (151)
Q Consensus 27 r~~~~v~E~~r-v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vial 105 (151)
-...++..+.. +.++..++.++|.+.||++|+.+|.-|. .++||+|++|+|++.+++ .|++|||+||||+|||+|+|
T Consensus 201 ~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~-~LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL 278 (307)
T COG1577 201 VIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLK-ALGVSTPELDELVEAARS-LGALGAKLTGAGGGGCIIAL 278 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHh-cCccccccccCCCCceEEEE
Confidence 34455554444 6788899999999999999999996555 589999999999999998 89999999999999999999
Q ss_pred ecccc-HHHHHHHHH
Q 031874 106 VDADR-AEEAASYVR 119 (151)
Q Consensus 106 v~~~~-~~~~~~~l~ 119 (151)
+++.+ .+.+.+.+.
T Consensus 279 ~~~~~~~~~l~~~~~ 293 (307)
T COG1577 279 AKNEEIAETLSNRLE 293 (307)
T ss_pred eccchHHHHHHHHHH
Confidence 98633 334444443
No 12
>PTZ00298 mevalonate kinase; Provisional
Probab=99.69 E-value=8.7e-16 Score=127.71 Aligned_cols=87 Identities=26% Similarity=0.334 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHHH
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 115 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~~ 115 (151)
.+.++..+|.++|++.++++|+++|..++ .+++++|++|++++.+++ .|++|+||||+|+|||+++|+++ +.++++.
T Consensus 226 ~~~~~~~al~~~d~~~lg~~m~~~~~~l~-~~~v~~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~ 303 (328)
T PTZ00298 226 CVSEAKEALQKGNLFRVGELMNANHDLCQ-KLTVSCRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIA 303 (328)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHH
Confidence 46678889999999999999999998887 478999999999999998 89999999999999999999975 6688888
Q ss_pred HHHHHHhHhh
Q 031874 116 SYVRSEYFEL 125 (151)
Q Consensus 116 ~~l~~~y~~~ 125 (151)
+.+++.|...
T Consensus 304 ~~l~~~~~~~ 313 (328)
T PTZ00298 304 KAVRARCPEA 313 (328)
T ss_pred HHHHHHhhhc
Confidence 9998887654
No 13
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.69 E-value=1.4e-16 Score=107.07 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh-hhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEe-ccccHHHHHHHH
Q 031874 41 GLEAWKSGNSQDFGKLISASGLS-SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYV 118 (151)
Q Consensus 41 ~~~al~~~d~~~lg~lm~~sh~~-l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv-~~~~~~~~~~~l 118 (151)
++++|.++|++.|+++|+++|.+ ......+.+|+++.+++.+++ .|++|++|||+|||||+++|+ +++.++++.+.+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 46899999999999999999975 222467789999999999988 899999999999999999999 667899999999
Q ss_pred HHHhH
Q 031874 119 RSEYF 123 (151)
Q Consensus 119 ~~~y~ 123 (151)
.+.|+
T Consensus 80 ~~~~~ 84 (85)
T PF08544_consen 80 REHYK 84 (85)
T ss_dssp HHHTH
T ss_pred HHhCC
Confidence 88775
No 14
>PLN02677 mevalonate kinase
Probab=99.66 E-value=1.6e-15 Score=129.07 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=79.2
Q ss_pred HHHHHHHHhc---------CCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc
Q 031874 38 VAKGLEAWKS---------GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 108 (151)
Q Consensus 38 v~~~~~al~~---------~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~ 108 (151)
+.++.++|.+ +|++.|+++|+.+|.-|. .+|||+|.+|.+++++++ .| +|||+||||+|||+|+|+++
T Consensus 272 ~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~-~LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 272 SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQ-CMGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEccc
Confidence 5678888887 569999999999997665 599999999999999998 55 89999999999999999986
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 109 DRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 109 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
+..++.++.+.++..+. |+ .+|.++ .+.|+++
T Consensus 349 ~~~~~~~~~l~~~l~~~--------G~--~~~~~~~g~~Gv~~ 381 (387)
T PLN02677 349 LLSGTVVDKVIAELESS--------GF--QCFTAGIGGNGVQI 381 (387)
T ss_pred ccchhHHHHHHHHHHHC--------CC--eEEEEEeCCCceEE
Confidence 43444444455554443 44 667877 7778776
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.65 E-value=1.2e-15 Score=122.85 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEE
Q 031874 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 105 (151)
Q Consensus 36 ~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vial 105 (151)
.++.++.++|+++|++.||++|+++|..+++ +++|+|++|+|++.+++ .|++|+||||||+|||+|+|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 4678889999999999999999999988875 89999999999999998 89999999999999999986
No 16
>PRK03926 mevalonate kinase; Provisional
Probab=99.64 E-value=1.1e-14 Score=119.19 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASY 117 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~ 117 (151)
+..+..++.++|++.|+++|+.+|. +.+.+++++|+++++++.+++ .|++|+||||+|+|||+++|++++..+++.+.
T Consensus 201 ~~~~~~al~~~d~~~l~~~~~~~~~-~~~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~ 278 (302)
T PRK03926 201 SEKGEELILSGDYVSLGELMNINQG-LLDALGVSTKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATA 278 (302)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHH
Confidence 3456688999999999999999995 556689999999999999998 89999999999999999999988888888877
Q ss_pred HHHHhHhhchhHhhhcCCCceEEEeec-CCceee
Q 031874 118 VRSEYFELQPELASQLNADSAVLICKP-GDCARV 150 (151)
Q Consensus 118 l~~~y~~~~~~~~~~~~~~~~~~~~~~-~~Ga~~ 150 (151)
+.+. + ..+|++++ .+|+++
T Consensus 279 ~~~~------------~--~~~~~~~~~~~G~~i 298 (302)
T PRK03926 279 IKIA------------G--GKPIITKITDEGLRI 298 (302)
T ss_pred HHhc------------C--CeEEEEecCCCeeEE
Confidence 7642 1 35788885 678876
No 17
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.59 E-value=1.7e-14 Score=121.47 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=73.7
Q ss_pred HHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhhhhc-----ccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEE
Q 031874 30 HYFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIYN-----YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCL 103 (151)
Q Consensus 30 ~~v~E~~r-v~~~~~al~~~d~~~lg~lm~~sh~~l~~~-----~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vi 103 (151)
.++.++.. +.+++++|.++|++.||++|+++|..|+.. .+||+|+++.|++.+++ .|+ |+|+||||+|||+|
T Consensus 249 ~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~i 326 (358)
T TIGR01220 249 RFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGI 326 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEE
Confidence 34544444 568899999999999999999999888752 48999999999999998 897 99999999999999
Q ss_pred EEeccc-cHHHHHHHHHH
Q 031874 104 ALVDAD-RAEEAASYVRS 120 (151)
Q Consensus 104 alv~~~-~~~~~~~~l~~ 120 (151)
+|++++ ..+++.++|++
T Consensus 327 al~~~~~~~~~~~~~~~~ 344 (358)
T TIGR01220 327 AILDAEADITHVRQRWET 344 (358)
T ss_pred EEeCCchhHHHHHHHHHH
Confidence 999754 35556655554
No 18
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.56 E-value=4.2e-14 Score=115.63 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEE
Q 031874 27 RAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 105 (151)
Q Consensus 27 r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~-~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vial 105 (151)
+..|-+.+- +.++.++|-.+|+..||++|+++|+..+.. -++|+|.+|.|.+.|++ +||+|+|++|||.||+++.+
T Consensus 221 e~~~~mk~~--A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf~ 297 (333)
T COG2605 221 EALHEMKAL--AYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLFF 297 (333)
T ss_pred HHHHHHHHH--HHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEEE
Confidence 444444433 468889999999999999999999887743 68899999999999999 99999999999999999999
Q ss_pred eccccHHHHHHHHHHH
Q 031874 106 VDADRAEEAASYVRSE 121 (151)
Q Consensus 106 v~~~~~~~~~~~l~~~ 121 (151)
|+|++.+.++++|..+
T Consensus 298 ~~p~k~~~l~r~l~~~ 313 (333)
T COG2605 298 CDPSKRNELARALEKE 313 (333)
T ss_pred eCccchHHHHHHHHHh
Confidence 9999999999998864
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.56 E-value=5.2e-14 Score=130.38 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEec-cccHHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD-ADRAEEAA 115 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~-~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~-~~~~~~~~ 115 (151)
+.++.++|.++|++.||++|+++|..++.. .+||+|++|.|++.+++ ||+|+|+||||+|||+|+|++ ++..+++.
T Consensus 868 a~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~ 945 (974)
T PRK13412 868 ALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIR 945 (974)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc--CCcEEEecccCcccEEEEEECChhhHHHHH
Confidence 578899999999999999999999877642 49999999999999964 799999999999999999995 55577777
Q ss_pred HHHHH
Q 031874 116 SYVRS 120 (151)
Q Consensus 116 ~~l~~ 120 (151)
+++++
T Consensus 946 ~~L~~ 950 (974)
T PRK13412 946 KILTE 950 (974)
T ss_pred HHHHh
Confidence 77765
No 20
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.40 E-value=4.7e-12 Score=105.73 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhh
Q 031874 52 DFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELAS 131 (151)
Q Consensus 52 ~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~ 131 (151)
.+.++|..||. |.+.+|||+|.+|+++..++. .| +.+|+||||+|||+|+|++++...+.+..++++...+
T Consensus 293 ~L~eLi~iNq~-LL~alGVsH~~le~v~~~t~k-~g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~------ 363 (397)
T KOG1511|consen 293 KLEELIRINQD-LLDALGVSHPSLELVCTTTRK-LG-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH------ 363 (397)
T ss_pred HHHHHHHHhHH-HHHHhCCCcHHHHHHHHHHHH-hC-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc------
Confidence 59999999996 445799999999999999998 78 7889999999999999999998888888888766553
Q ss_pred hcCCCceEEEee-cCCceee
Q 031874 132 QLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 132 ~~~~~~~~~~~~-~~~Ga~~ 150 (151)
| +.+|.+. -+.|+++
T Consensus 364 --g--f~v~~t~lGG~G~~v 379 (397)
T KOG1511|consen 364 --G--FEVFETELGGPGVSV 379 (397)
T ss_pred --C--cceeeccCCCCceEE
Confidence 3 3678877 6778776
No 21
>PRK01212 homoserine kinase; Provisional
Probab=99.19 E-value=2e-10 Score=94.08 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccC-CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc
Q 031874 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 108 (151)
Q Consensus 30 ~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~v-s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~ 108 (151)
+.+.+..++..+..+|.++|++.+++.|+ +.+.+.+.. .+|+++.+.+.+++ .|++|++|||+| +|+++|+++
T Consensus 193 ~~~~~~~~~~~l~~al~~~d~~~~~~~~~---~~~~~~~~~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~ 266 (301)
T PRK01212 193 DAVFNSSRAALLVAALYTGDYELAGRAMK---DVLHEPYRAKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDK 266 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhc---hhheHHhHHhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEecc
Confidence 34455667778889999999999999984 334444422 47999999999998 899999999988 999999987
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCC-ceeeC
Q 031874 109 DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARVI 151 (151)
Q Consensus 109 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-Ga~~~ 151 (151)
+..+++.+.+++.| .. +.+..+++++++. |+++.
T Consensus 267 ~~~~~~~~~l~~~~-~~--------~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 267 EDAEKVADALQKAF-LQ--------GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred ccHHHHHHHHHHhh-cc--------CCCeEEEEeccCCCceEeC
Confidence 65578888887765 21 6677899999555 98763
No 22
>PLN02451 homoserine kinase
Probab=99.16 E-value=4.8e-10 Score=95.13 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHH
Q 031874 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAE 112 (151)
Q Consensus 34 E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~ 112 (151)
...++...+.+|.++|++.+++.|+..|. +......++|+++++++.+++ .|++|++|||+| .|+++|++. +.++
T Consensus 257 ~~~~~~~l~~al~~~d~~~l~~~m~nD~~-~e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--ptvfal~~~~~~a~ 332 (370)
T PLN02451 257 NCSQAAALVAAILQGDAVLLGEALSSDKI-VEPTRAPLIPGMEAVKKAALE-AGAYGCTISGAG--PTAVAVIDDEEKGE 332 (370)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hHHHHhhhCccHHHHHHHHHH-CCCeEEEEEccc--hheEEEEcCHHHHH
Confidence 34555667789999999999999986432 211235679999999999998 899999999999 799999975 4688
Q ss_pred HHHHHHHHHhHhhchhHhhhcCCCceEEEeecC-Cceee
Q 031874 113 EAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 150 (151)
Q Consensus 113 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-~Ga~~ 150 (151)
++.+++++.|.+. .+....+++++++ .|+++
T Consensus 333 ~i~~~l~~~~~~~-------~~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 333 EVGERMVEAFRKA-------GNLKATASVKKLDRVGARL 364 (370)
T ss_pred HHHHHHHHHHHHh-------cCCCceEEEeccCCCCeEE
Confidence 8999998887654 1467889999955 59986
No 23
>PTZ00299 homoserine kinase; Provisional
Probab=98.99 E-value=3.5e-09 Score=88.93 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccC-C-ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEec
Q 031874 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-G-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 107 (151)
Q Consensus 30 ~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~v-s-~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~ 107 (151)
..+.+..|+...+.+|.++|++.+.. | ++.+++.|.. . .|+++.+.+.+.+ .|++|+-|||+| .++++|++
T Consensus 201 dav~n~~~~~~lv~al~~~d~~ll~~-~---~D~lhep~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG--PTv~al~~ 273 (336)
T PTZ00299 201 DAVFNISRTSILVLALSTGDLRMLKS-C---SDKLHEQQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG--PSVCALVG 273 (336)
T ss_pred HHHHhhhHHHHHHHHHHhCCHHHHHh-c---hhcccCcccccccCccHHHHHHHHHH-CCCeEEEEEchh--hhheEEec
Confidence 56777788777889999999998864 4 2567778875 5 8999999999998 899999999999 99999997
Q ss_pred c------------ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCC-ceee
Q 031874 108 A------------DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 150 (151)
Q Consensus 108 ~------------~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-Ga~~ 150 (151)
. +..+++.++|.+.|.+. |+...++++.++. |+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~ 321 (336)
T PTZ00299 274 GRHGDPLTQPREERKAESVAEAMIKAAEAV--------GVAGRVIITQPSDQGVHL 321 (336)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHc--------CCceEEEEccCCCCCcEE
Confidence 2 33678999999888764 8889999999665 9986
No 24
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=98.91 E-value=1.9e-08 Score=83.17 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEe
Q 031874 28 AEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 106 (151)
Q Consensus 28 ~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs-~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv 106 (151)
....+.+..++.-++.+|.++|.+.+..+|. +-+.+.|+.+ .|..+++.+.+.+ +|+||+-+||+| .++++++
T Consensus 187 ~~daV~n~s~~a~lv~al~~~~~~l~~~~~~---D~ihepyR~~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~ 260 (299)
T COG0083 187 RKDAVFNLSRAALLVAALLEGDPELLRAMMK---DVIHEPYRAKLVPGYAEVREAALE-AGALGATLSGAG--PTVFALA 260 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHhc---cccchhhhhhhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEe
Confidence 4578889999999999999999666666666 6788899998 7999999999998 999999999999 9999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceeeC
Q 031874 107 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 151 (151)
Q Consensus 107 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~~ 151 (151)
++. .++.+..+.+.++++ +.+..++++. +.+|++++
T Consensus 261 ~~~-~~e~~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 261 DES-DAEKAAALLEELYEQ--------GIKGRVHILALDSDGARVV 297 (299)
T ss_pred ccc-hhhHHHHHHHHHHHh--------CCcceEEEEeecCCcceEe
Confidence 887 434444444444443 5667777776 89997763
No 25
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.88 E-value=9.7e-09 Score=84.28 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHH
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 114 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs-~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~ 114 (151)
++..+..++.++|++.+++.|.. .+ +.+.++ +|+++++++.+++ .|++|++|||+| +++++|+++ +.++++
T Consensus 197 ~~~~~~~al~~~d~~~l~~~~~n---~l-e~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG--~tv~~l~~~~~~~~~~ 269 (300)
T PRK03188 197 EPDPLLAALRAGDPAQLAPLLGN---DL-QAAALSLRPSLRRTLRAGEE-AGALAGIVSGSG--PTCAFLCADADSAVDV 269 (300)
T ss_pred cHHHHHHHHHcCCHHHHHHHhhC---cC-HHHHHHhCchHHHHHHHHHH-CCCCEEEEEccc--cceEEEeCCHHHHHHH
Confidence 46778899999999999999852 33 346665 9999999999998 899999999999 678888875 345666
Q ss_pred HHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceeeC
Q 031874 115 ASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 151 (151)
Q Consensus 115 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~~ 151 (151)
.+.+++ . |....+++++ ...|++|+
T Consensus 270 ~~~l~~----~--------g~~~~~~~~~~~~~~~~~~ 295 (300)
T PRK03188 270 AAALSG----A--------GVCRTVRVATGPVPGARVV 295 (300)
T ss_pred HHHHHh----c--------CcceeEEEeeccccceEec
Confidence 666554 1 4445677755 77888874
No 26
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=98.85 E-value=2.5e-08 Score=82.03 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhccc-CCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc
Q 031874 31 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE-CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 109 (151)
Q Consensus 31 ~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~-vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~ 109 (151)
.+.+..+......++.+++++ +++.+.+++ +.+.|. ..+|+++.+++.+++ .|++|++|||+| +|+++|++++
T Consensus 194 ~v~~~~~~~~l~~al~~~~~~-l~~~~~~d~--l~e~~~~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~~ 267 (302)
T TIGR00191 194 LVFNLSHLAGLVHAIYQKKPD-LGAIMMKDR--IHQPYRESLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADEE 267 (302)
T ss_pred HHHHHHHHHHHHHHHHcCCHH-HHHHHcccc--cchhhHhhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecch
Confidence 334445555567888888764 566665542 333443 348999999999998 899999999999 9999999876
Q ss_pred cHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCC-ceee
Q 031874 110 RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 150 (151)
Q Consensus 110 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-Ga~~ 150 (151)
...+.+..+.+.... .+.+..++++.++. |+++
T Consensus 268 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 268 FAEQKEQDLLEVLHK--------QGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred hhHHHHHHHHHHHHh--------cCCCeEEEEcccCCCCeEe
Confidence 654434333333332 26678899999554 9876
No 27
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.69 E-value=4.3e-08 Score=79.84 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 115 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs-~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~ 115 (151)
+..+..++.++|++.++.+|+ +.+ +.++++ .|+++++++.+++ .|++|++|||+| +|+++|++.+ .++++.
T Consensus 194 ~~~~~~~l~~~d~~~~~~~~~---n~l-~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~ 266 (286)
T PRK00128 194 TEKLIEAIEEGDYQGICANMG---NVL-ENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIY 266 (286)
T ss_pred hHHHHHHHhcCCHHHHHHhcc---CcH-HHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHH
Confidence 456788999999999999985 345 567785 8999999999998 899999999999 9999999763 467777
Q ss_pred HHHHH
Q 031874 116 SYVRS 120 (151)
Q Consensus 116 ~~l~~ 120 (151)
+.+++
T Consensus 267 ~~l~~ 271 (286)
T PRK00128 267 NGLKG 271 (286)
T ss_pred HHhHh
Confidence 77764
No 28
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.61 E-value=2e-07 Score=76.98 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH-hCCCCceeeeccCCCCceEEEEeccc-cHH
Q 031874 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ-RAPGVFGARFSGAGFRGCCLALVDAD-RAE 112 (151)
Q Consensus 35 ~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~-~~~Ga~Gak~tGaG~GG~vialv~~~-~~~ 112 (151)
..+......+|.++|++.++..| |+.++....-..|++.++++.++ + .|++|+.|||+| +|+++|++.+ .++
T Consensus 208 ~~~~~~l~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~~a~ 281 (312)
T PRK02534 208 ALRSGPLLQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQEQAE 281 (312)
T ss_pred ccchhHHHHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHHHHH
Confidence 44445567889999999998876 44566543336899999988887 7 899999999998 9999999764 577
Q ss_pred HHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 113 EAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 113 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
.+.+++++.|.. ....+++++ ...|++|
T Consensus 282 ~~~~~l~~~~~~----------~~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 282 QALEQVREAFAD----------PGLDAWVCQFISHGIQL 310 (312)
T ss_pred HHHHHHHHHhcc----------CceEEEEEEecCCCcee
Confidence 777777664432 223688888 4558875
No 29
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.54 E-value=4.2e-07 Score=73.70 Aligned_cols=73 Identities=21% Similarity=0.166 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHH
Q 031874 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 115 (151)
Q Consensus 36 ~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~ 115 (151)
..+.++.++++.+|+. ++|+.+|..+....+++++ +++.+++ .|++|++|||+ |||+++|+++. +++.
T Consensus 181 ~~~~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGa--G~sv~aL~~~~--~~v~ 248 (261)
T TIGR01920 181 PVVEEAFNLALRGEYL---KAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGK--GPSYFALTEDP--EEAA 248 (261)
T ss_pred hHHHHHHHHHhhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCC--CCeEEEEeCCH--HHHH
Confidence 4566777888999886 8899998644355777764 4577887 89999999997 59999998755 6677
Q ss_pred HHHHH
Q 031874 116 SYVRS 120 (151)
Q Consensus 116 ~~l~~ 120 (151)
++|++
T Consensus 249 ~~~~~ 253 (261)
T TIGR01920 249 EALME 253 (261)
T ss_pred HHHHh
Confidence 77765
No 30
>PRK01123 shikimate kinase; Provisional
Probab=98.40 E-value=2.6e-06 Score=69.59 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHH
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAAS 116 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~ 116 (151)
.+.++.++++++|+. .+|+.++...+..+++++ .++..+++ .|++|+++||+| ||+++|++++..+++.+
T Consensus 192 ~~d~~~~~~~~~~l~---~~~~~~~l~~~~~l~~~~----~~i~~a~~-~Ga~ga~lSGaG--ptv~al~~~~~~~~v~~ 261 (282)
T PRK01123 192 YVDMAFELALDGEYF---KAMTLNGLLYSSALGFPT----EPALEALE-AGAVGVGLSGTG--PSYVAIVDEEDPEEVKE 261 (282)
T ss_pred HHHHHHHHHhhccHH---HHHHhCCchhhhhhCCCh----HHHHHHHH-CCCeEEEEecCC--CeEEEEeCCCCHHHHHH
Confidence 344555666778774 677766443333455553 33455677 899999999865 99999998888888888
Q ss_pred HHHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 117 YVRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 117 ~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
++++. ..+++++ ...|+++
T Consensus 262 ~l~~~---------------~~~~~~~~~~~G~~v 281 (282)
T PRK01123 262 AWEKY---------------GKVIVTKINNEGARI 281 (282)
T ss_pred HHHhC---------------CEEEEeeecCCCcee
Confidence 88762 3577777 5678776
No 31
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.39 E-value=7.5e-06 Score=68.40 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=75.6
Q ss_pred HHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH----hhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEe
Q 031874 33 TENRRV--AKGLEAWKSGNSQDFGKLISASGL----SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 106 (151)
Q Consensus 33 ~E~~rv--~~~~~al~~~d~~~lg~lm~~sh~----~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv 106 (151)
.+..|+ ...+.+|.++|++.|++.|+.-+. .+...|. .|.+..+.+.+++ ++|+-|||+| .++++++
T Consensus 215 ~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r--~~li~~~~~~l~~---a~g~~iSGsG--PTv~al~ 287 (324)
T TIGR00144 215 ERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQ--DPLIKRIIDSMIS---APGAGMSSFG--PTVYAVT 287 (324)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhcccc--CHHHHHHHHHHHh---ccCceecCCC--CeEEEEe
Confidence 444454 335899999999999999986442 2333333 6777777777754 4889997776 9999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecC-CceeeC
Q 031874 107 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 151 (151)
Q Consensus 107 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-~Ga~~~ 151 (151)
+.+ .+++.+++.+.|... +....+++++++ .|++|.
T Consensus 288 ~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 288 DEK-PGNIAGAVADIFGPY--------GVYGRIIVTKARNRGAFII 324 (324)
T ss_pred cCc-hHHHHHHHHHHhhhC--------CCceEEEEEccCCCCCEeC
Confidence 754 778888888866543 778899999966 599873
No 32
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.37 E-value=1.5e-05 Score=65.65 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh---hhccc--CCChHHHHHHHHHHh
Q 031874 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS---IYNYE--CGSEPLIQLNEILQR 84 (151)
Q Consensus 10 ~~~l~~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l---~~~~~--vs~peld~l~~~a~~ 84 (151)
+.++......+|.....++.|++- ..++.++..+|++.||+.|++-|.-. .+..+ .-|+.+..+++.+.+
T Consensus 181 E~~if~~~~p~p~~~~~~ls~~vL-----m~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~ 255 (312)
T COG1907 181 EVDIFKKYCPVPLEEVGELSHRVL-----MKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE 255 (312)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-----HHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH
Confidence 556666666788888888887775 46778899999999999999998766 33233 348999999999998
Q ss_pred CCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 85 APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 85 ~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
+ +||+-+ +.||.++.+++++....++...+.+.+.+. +....+++++ ...||.+
T Consensus 256 -~-a~~agq--SSwGPtvY~i~d~~~~~~~~~~~~~~~~~~--------g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 256 -A-AYGAGQ--SSWGPTVYGIVDSREAGSVVRKLIDILLEE--------GIGGEVFVTKARNRGAEI 310 (312)
T ss_pred -h-cccccc--cccCCEEEEeccccccchHHHHHHHHHHhc--------CCceEEEEeccCCCCcee
Confidence 5 788866 468899999999888887777777766664 7888999999 5667765
No 33
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.28 E-value=2.9e-06 Score=70.03 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLI-SASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 114 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm-~~sh~~l~~~~~vs-~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~ 114 (151)
....+.++.++|++.+...| |. + +.+..+ +|+++++.+.+++ .|++|++|||+| +|++++++. +.++++
T Consensus 208 ~~~~~~al~~~~~~~l~~~l~nd----l-e~~~~~l~P~~~~i~~~~~~-~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~ 279 (297)
T PRK14613 208 SEDLISSLKVGDWVSLQGRLEND----F-EPVAFQLHPELGVLKDKFLE-FGSSYCSLTGSG--SSMYGLVQGLEIQEEL 279 (297)
T ss_pred HHHHHHHHHcCCHHHHHHHhccc----c-hHHHHHhCcHHHHHHHHHHH-cCCCEEEEEccc--cceEEEeCCHHHHHHH
Confidence 34567888899999875543 43 3 333333 8999999999988 899999999996 999999976 557788
Q ss_pred HHHHHHHhHh
Q 031874 115 ASYVRSEYFE 124 (151)
Q Consensus 115 ~~~l~~~y~~ 124 (151)
.+.+++.|.+
T Consensus 280 ~~~l~~~~~~ 289 (297)
T PRK14613 280 LPRLRQEFSN 289 (297)
T ss_pred HHHHHHhhcc
Confidence 8888766543
No 34
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=98.07 E-value=9.2e-05 Score=64.66 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHhhhhc---cc--CCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhH
Q 031874 49 NSQDFGKLISASGLSSIYN---YE--CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 49 d~~~lg~lm~~sh~~l~~~---~~--vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~ 123 (151)
++..+.+.|.++-..|++. -+ |-+|++-+|++.+.+.+||+|+++.|||+|.|+++|+..+. ++++.+.+.+.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 7888888898888777632 33 34789999999999989999999999999999999986543 13344444443
No 35
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=97.89 E-value=4.4e-05 Score=62.81 Aligned_cols=75 Identities=20% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHHHHHHH
Q 031874 42 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 120 (151)
Q Consensus 42 ~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~~~l~~ 120 (151)
..++..+++..+... .|+.+...---++|+++++.+.+++ .|++|++|||+| +|+++|++.+. +.++.+.+++
T Consensus 200 ~~~~~~~~~~~~~~~---~~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~~~ 273 (293)
T TIGR00154 200 LKKISLECLQLLDSN---GLNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSGSG--ACVFALFDMESEAEQVLEQAPE 273 (293)
T ss_pred HHHHhhccHHHHhhh---hcCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEeccc--cceEEEeCCHHHHHHHHHHhHH
Confidence 344555555544322 2344543222268999999999998 899999999996 99999997654 6666666654
Q ss_pred Hh
Q 031874 121 EY 122 (151)
Q Consensus 121 ~y 122 (151)
.+
T Consensus 274 ~~ 275 (293)
T TIGR00154 274 WL 275 (293)
T ss_pred Hh
Confidence 43
No 36
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.88 E-value=2.1e-05 Score=64.23 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHHHHHHH
Q 031874 72 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 120 (151)
Q Consensus 72 ~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~~~l~~ 120 (151)
+|+++++++.+++ .|++|++|||+| ||+++|++++. ++++.+.+++
T Consensus 222 ~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 222 FPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred ChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 7999999999998 899999999998 99999998665 5666656554
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.78 E-value=3e-05 Score=63.10 Aligned_cols=75 Identities=24% Similarity=0.315 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHH
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAA 115 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~ 115 (151)
++.....+|.++|...+ .| .+.......+|+++++.+.+++ .|++|++|||+| +|+++|++++. ++++.
T Consensus 189 ~~~~l~~~l~~~d~~~~---~n----~l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~ 258 (276)
T PRK14612 189 DVEAILAALARGEEPPY---WN----SLEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRAA 258 (276)
T ss_pred cHHHHHHHHHhcccccc---cC----CcHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHHH
Confidence 35556667777763221 11 2222223478999999999998 899999999999 89999997543 66677
Q ss_pred HHHHHH
Q 031874 116 SYVRSE 121 (151)
Q Consensus 116 ~~l~~~ 121 (151)
+.+++.
T Consensus 259 ~~l~~~ 264 (276)
T PRK14612 259 AALRAR 264 (276)
T ss_pred HHhHhh
Confidence 676653
No 38
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00017 Score=59.07 Aligned_cols=106 Identities=23% Similarity=0.195 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhcC-C-HHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHh--CCCCceeeeccCCCCceEEE
Q 031874 30 HYFTENRRVAKGLEAWKSG-N-SQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQR--APGVFGARFSGAGFRGCCLA 104 (151)
Q Consensus 30 ~~v~E~~rv~~~~~al~~~-d-~~~lg~lm~~sh~~l~~~~~vs-~peld~l~~~a~~--~~Ga~Gak~tGaG~GG~via 104 (151)
|.|-+.+|......||..+ | ......+|. +..++.|+.+ .|.+..+...+.. .+|.+|.-++||| .++++
T Consensus 240 d~V~NlqrlA~LttAl~~~p~n~~L~y~~m~---DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lA 314 (355)
T KOG1537|consen 240 DHVWNLQRLAALTTALLEGPDNVMLGYALMS---DKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAG--PTALA 314 (355)
T ss_pred eeeecHHHHHHHHHHHhcCCCchhhhhhhhh---ccccCccccccCccHHHHHHhhCcccCCceeeEEecCCC--CeeEE
Confidence 5566777777777888776 4 444455555 5677889998 7999999988876 2599999999998 99999
Q ss_pred EeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCcee
Q 031874 105 LVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCAR 149 (151)
Q Consensus 105 lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~ 149 (151)
|.+ ++-+++.++|...|.+. |+++.+-.++ .-+||.
T Consensus 315 lat-enf~eI~~~mv~~F~K~--------G~kcs~~~l~pa~Dga~ 351 (355)
T KOG1537|consen 315 LAT-ENFQEIGEKMVEAFWKV--------GHKCSVASLKPALDGAG 351 (355)
T ss_pred Eec-CcHHHHHHHHHHHHHhh--------CceeeeEeeccccCCcc
Confidence 997 88999999999999986 8899988888 345544
No 39
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.70 E-value=0.00013 Score=59.67 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=57.5
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhhhhcccC-CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHH
Q 031874 38 VAKGLEAWKS-GNSQDFGKLISASGLSSIYNYEC-GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 114 (151)
Q Consensus 38 v~~~~~al~~-~d~~~lg~lm~~sh~~l~~~~~v-s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~ 114 (151)
+...+.++.+ ++++.++.++|.- +.+.. -.|+++++.+.+++ .|++|+.|||+| .|+++|+++ +.++++
T Consensus 195 ~~~l~~~l~~~~~~~l~~~~~nD~-----e~~~~~l~p~l~~v~~~~~~-~Galg~~lSGSG--ptv~al~~~~~~a~~i 266 (287)
T PRK14616 195 LKTLVRRLCLDGDTSVLPAFENDF-----ESAVFDHYPAVRKVKDDLLE-AGSFFASLSGSG--SAVFGLFENEADAEAA 266 (287)
T ss_pred HHHHHHHHhcCCHHHHHHHhcCcc-----HHHHHHhChHHHHHHHHHHh-CCCCeEEEeccc--ccceEEeCCHHHHHHH
Confidence 3344555444 5666666555422 22222 27999999999998 899999999999 899999976 567888
Q ss_pred HHHHHHHhHhh
Q 031874 115 ASYVRSEYFEL 125 (151)
Q Consensus 115 ~~~l~~~y~~~ 125 (151)
.+.+++.|...
T Consensus 267 ~~~l~~~~~~~ 277 (287)
T PRK14616 267 AEMMRARYRTN 277 (287)
T ss_pred HHHhHHhCccc
Confidence 88888776653
No 40
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.60 E-value=0.00011 Score=60.63 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHHHHHHH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 120 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~ 120 (151)
..|+++++.+.+.+ .|++|++|||+| +|+++|++++ .++++.+++++
T Consensus 239 l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 239 AHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred hChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 58999999999998 899999999999 9999998754 46666666654
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.25 E-value=0.00029 Score=57.40 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc
Q 031874 61 GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 108 (151)
Q Consensus 61 h~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~ 108 (151)
|..++......+|+++++.+.+++ .|++|++|||+| +|+++|.++
T Consensus 208 ~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~ 252 (269)
T PRK14609 208 VNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKK 252 (269)
T ss_pred CCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECC
Confidence 345555555678999999999988 899999999997 999999964
No 42
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.16 E-value=0.00078 Score=55.34 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHhCC-CCceeeeccCCCCceEEEEeccc-cHHHHHHHHHH
Q 031874 71 GSEPLIQLNEILQRAP-GVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 120 (151)
Q Consensus 71 s~peld~l~~~a~~~~-Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~ 120 (151)
.+|+++++.+.+.+ . |++|++|||+| .|+++|++++ .++++.+.+++
T Consensus 229 l~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~ 277 (290)
T PRK14608 229 LAPVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAA 277 (290)
T ss_pred cCcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHh
Confidence 48999999999988 8 99999999999 9999999754 36666666654
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.63 E-value=0.0039 Score=51.13 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=43.0
Q ss_pred HHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHHHHHHHH
Q 031874 60 SGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 120 (151)
Q Consensus 60 sh~~l~~~~~vs-~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~~~~l~~ 120 (151)
.++.+. .+..+ +|++.++.+.+++..|++++.|||+| .|+++++++ +.++++.+.+.+
T Consensus 210 ~~Ndle-~~~~~l~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 210 ARNDLL-ETAISLVPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred hcCchH-HHHHHhChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCCHHHHHHHHHHhhh
Confidence 344444 35555 89999999988653589999999999 899999876 446666666654
No 44
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.05 E-value=0.016 Score=47.07 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc
Q 031874 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 108 (151)
Q Consensus 35 ~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~ 108 (151)
..+......++.++|+..++..+. +.+.+.+--..|++..+.+.... .| +|+.|||+| .++++++++
T Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 188 KEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEY-LG-YKPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred cchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHh-CC-CCEEEeCcc--ccceeEeCC
Confidence 345566778899999998877654 56777664458999999887654 45 699999999 999999943
No 45
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=94.40 E-value=0.98 Score=37.60 Aligned_cols=83 Identities=17% Similarity=0.092 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCC-------ChHHH---HHHHHHHhCCCCceeeeccCCCCceEEEEe
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPLI---QLNEILQRAPGVFGARFSGAGFRGCCLALV 106 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs-------~peld---~l~~~a~~~~Ga~Gak~tGaG~GG~vialv 106 (151)
++..+++++.++|++.||++...+-..|+..+--+ .|+.- .+++..++ .|.-..-..=|| ..+..|+
T Consensus 212 ~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~~~~T~DAG--pNv~vl~ 288 (305)
T TIGR01240 212 DFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTICYFTMDAG--PNVKVLY 288 (305)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCcEEEEEcCC--CCEEEEE
Confidence 47889999999999999999998877776332222 22322 34455555 565445555566 8899999
Q ss_pred ccccHHHHHHHHHHHh
Q 031874 107 DADRAEEAASYVRSEY 122 (151)
Q Consensus 107 ~~~~~~~~~~~l~~~y 122 (151)
++++.+++.+.+.+.|
T Consensus 289 ~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 289 LAENLSKLFEFIYKLF 304 (305)
T ss_pred ccccHHHHHHHHHHhc
Confidence 9999999998887654
No 46
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=94.32 E-value=0.61 Score=42.02 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhhhh-cccCCChHHHHHHHHHHhCCCCcee--eeccCCC
Q 031874 26 KRAEHYFTENRR----VAKGLEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQRAPGVFGA--RFSGAGF 98 (151)
Q Consensus 26 ~r~~~~v~E~~r----v~~~~~al~~~d~~~lg~lm~~sh~~l~~-~~~vs~peld~l~~~a~~~~Ga~Ga--k~tGaG~ 98 (151)
.|+....+.... +.+..+-+++|.++.+|+++...|....- ..|+..+.+-+|++.... -..|- -..|+|+
T Consensus 821 ar~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLap--h~hgesgw~AGAGG 898 (948)
T KOG4644|consen 821 ARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAP--HKHGESGWAAGAGG 898 (948)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcc--ccccccchhccCCC
Confidence 455555555444 34566677899999999999988876542 145556677778777643 23443 3789999
Q ss_pred CceEEEEeccccHHHHHHHHHH
Q 031874 99 RGCCLALVDADRAEEAASYVRS 120 (151)
Q Consensus 99 GG~vialv~~~~~~~~~~~l~~ 120 (151)
||++.-+.++....+-++++..
T Consensus 899 GGFiYLl~kEpqqkeaiEa~La 920 (948)
T KOG4644|consen 899 GGFIYLLIKEPQQKEAIEAFLA 920 (948)
T ss_pred CcEEEEEecCCCCHHHHHHhhc
Confidence 9999999987766665555543
No 47
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=94.12 E-value=0.1 Score=42.44 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHHHHHHHH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSE 121 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~~~l~~~ 121 (151)
-.|+++++.+.+.+ .|+ +.|||+| .|+++|++++. ++.+.+.+++.
T Consensus 216 ~~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~ 262 (271)
T PRK00343 216 RYPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEW 262 (271)
T ss_pred hChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhh
Confidence 47899999888887 788 8899999 99999997643 55666566543
No 48
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=93.06 E-value=0.16 Score=42.08 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHHHHHHH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 120 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~~~l~~ 120 (151)
..|++........+ .|+.+++|||+| .|++++++.+. ++.+.+.+.+
T Consensus 224 ~~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 224 LYPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred hChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 35888776666666 688999999999 99999998766 4444444443
No 49
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=92.31 E-value=0.33 Score=40.23 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHhCCCC-ce--eeeccCCCCceEEEEeccc-cHHHHH-HHHHHHhH
Q 031874 72 SEPLIQLNEILQRAPGV-FG--ARFSGAGFRGCCLALVDAD-RAEEAA-SYVRSEYF 123 (151)
Q Consensus 72 ~peld~l~~~a~~~~Ga-~G--ak~tGaG~GG~vialv~~~-~~~~~~-~~l~~~y~ 123 (151)
.|++.++.+...+ .|+ +| ++|||+| .|++++++.+ ..+++. +.+++.|.
T Consensus 206 ~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 206 RLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred ChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 6899999888876 443 34 8899999 9999999763 345554 55555433
No 50
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.59 E-value=3.5 Score=34.00 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=45.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHH
Q 031874 44 AWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 120 (151)
Q Consensus 44 al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~ 120 (151)
.-.+|+| .+.|.-|....-.-+|... +++..+++ .|+.++-+||-| .++++|+++. .++.+.|.+
T Consensus 195 lA~~G~~---~~Am~lNG~~y~~aLG~~~----e~~~~ale-~GA~~aglSGtG--Pa~~Al~~~~--~~v~ea~~~ 259 (278)
T COG1685 195 LALKGEY---FKAMVLNGILYCSALGYDL----EPALKALE-AGAAAAGLSGTG--PAYFALTEDP--EEVAEAWSK 259 (278)
T ss_pred HHhcccH---HHHHHHhHHHHHHHhCCCh----HHHHHHHh-cccceeccCCCC--CceEEEecCc--HHHHHHHHh
Confidence 3356777 5667766654444455543 34466677 899999998888 9999999766 777777775
No 51
>PLN02407 diphosphomevalonate decarboxylase
Probab=89.70 E-value=3.8 Score=34.88 Aligned_cols=86 Identities=17% Similarity=0.066 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCC-------ChHHH---HHHHHHHhCCCC-ceeeeccCCCCceEEE
Q 031874 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPLI---QLNEILQRAPGV-FGARFSGAGFRGCCLA 104 (151)
Q Consensus 36 ~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs-------~peld---~l~~~a~~~~Ga-~Gak~tGaG~GG~via 104 (151)
.+..++.+|++++|++.||++...+-..|+..+=-+ +|+.- .+++..++..|. -.+-..=|| .-+..
T Consensus 235 ~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAG--PNv~v 312 (343)
T PLN02407 235 KRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAG--PNAVL 312 (343)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCC--CCEEE
Confidence 456788999999999999999998877776332122 22222 344555542353 234455566 88888
Q ss_pred EeccccHHH-HHHHHHHHhH
Q 031874 105 LVDADRAEE-AASYVRSEYF 123 (151)
Q Consensus 105 lv~~~~~~~-~~~~l~~~y~ 123 (151)
|+.++..++ |++++.+.|.
T Consensus 313 l~~~~~~~~~v~~~~~~~~~ 332 (343)
T PLN02407 313 IALNRKVAAQLLQRLLYYFP 332 (343)
T ss_pred EEChhhhHHHHHHHHHHhcC
Confidence 888888887 8888776654
No 52
>PRK05905 hypothetical protein; Provisional
Probab=83.78 E-value=1.2 Score=36.34 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEe
Q 031874 72 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 106 (151)
Q Consensus 72 ~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv 106 (151)
+|++.++.+..++ .|+ .++|||+| .|++++-
T Consensus 223 ~P~i~~~~~~l~~-~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 223 YPNLLYKYNELLN-DGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred ChHHHHHHHHHHh-CCC-CEEEeCcc--hhheEEe
Confidence 7999999888887 686 89999998 8888764
No 53
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=81.03 E-value=5 Score=25.33 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHH
Q 031874 70 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 120 (151)
Q Consensus 70 vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~ 120 (151)
+|...+..|.+++++ .|.--.|+|... +..+--++.++.+++.+.+.+
T Consensus 21 i~~~~l~~la~ia~~-yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEK-YGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHH-HSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHH-hCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 356788899999988 676667998877 788888999999999988874
No 54
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=79.32 E-value=38 Score=28.74 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcc-cCC------ChHHHHHHHHH---HhCCCCceeeecc
Q 031874 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-ECG------SEPLIQLNEIL---QRAPGVFGARFSG 95 (151)
Q Consensus 26 ~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~-~vs------~peld~l~~~a---~~~~Ga~Gak~tG 95 (151)
.|+.|..... .++..+++++|++.|+++...+-..++-.+ ... +++.-.+++.. ++. |-.-+-.+=
T Consensus 208 ~w~~~~~~~~---~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~~~~fT~D 283 (329)
T COG3407 208 AWLEHSEEDL---EEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GNAVYFTMD 283 (329)
T ss_pred HHHHHHHHhH---HHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CCceEEEEc
Confidence 3444544332 578899999999999999988776666322 111 23333444444 432 322233333
Q ss_pred CCCCceEEEEeccccHHHHHHHHHHHhH
Q 031874 96 AGFRGCCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 96 aG~GG~vialv~~~~~~~~~~~l~~~y~ 123 (151)
+| ..|..++..++..++.+.+.+.+.
T Consensus 284 aG--PnV~v~~~~~~l~~~~~~~~~~~~ 309 (329)
T COG3407 284 AG--PNVKVITLEENLIDLLEILKTLEC 309 (329)
T ss_pred CC--CceEEEEecccHHHHHHHHhhccc
Confidence 44 899999999999998888876443
No 55
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.82 E-value=69 Score=26.57 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc
Q 031874 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR 110 (151)
Q Consensus 39 ~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~ 110 (151)
..+..|++.+|...+|+.-.-|--.-. -..+-|-+++|.+++.+ .+++|--+.=+ |+|+.|.=+..
T Consensus 200 ~~v~~A~~~~~~~~lG~AAT~SAv~~Q--~~LPK~~~~~lL~l~e~-~~~~Gv~VAHS---GtmlGli~D~~ 265 (293)
T COG4542 200 NLVEKALKVGDPKLLGEAATLSAVKNQ--DRLPKPGLNELLRLVEE-TCAIGVIVAHS---GTMLGLIYDRK 265 (293)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhc--cccCchhHHHHHHHHHH-hcccceEEecc---CceEEeeeccc
Confidence 455578889999999999886653222 24577899999999988 67788777666 58998885444
No 56
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=56.63 E-value=5.4 Score=15.45 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=4.1
Q ss_pred ccCCCC
Q 031874 94 SGAGFR 99 (151)
Q Consensus 94 tGaG~G 99 (151)
.|+|||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 467776
No 57
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=52.99 E-value=1.5e+02 Score=25.49 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHH-------HHHHHHH---HhCCCC-
Q 031874 20 LEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL-------IQLNEIL---QRAPGV- 88 (151)
Q Consensus 20 l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~pel-------d~l~~~a---~~~~Ga- 88 (151)
-+.-+..|+.++|- .|+.++.+++++.|++.|.++--.--..++..+==|.|.| -++++.. .+..|-
T Consensus 220 TS~L~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t 297 (395)
T KOG2833|consen 220 TSQLLQHRIESVVP--QRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGT 297 (395)
T ss_pred HhHHHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCe
Confidence 34556678888875 5678999999999999999975322223331110022222 1333333 322232
Q ss_pred ceeeeccCCCCceEEEEeccccHHHHHHHHHHHhH
Q 031874 89 FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 89 ~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~ 123 (151)
.-|-.--||=.-|++++ ++++.++.+.+.+.|.
T Consensus 298 ~vAYTFDAGPNAvl~~l--~e~~~~~l~~~~~~f~ 330 (395)
T KOG2833|consen 298 RVAYTFDAGPNAVLIVL--EENVSQLLAAVLKVFP 330 (395)
T ss_pred eEEEEecCCCceEEEEh--hhhHHHHHHHHHHhcC
Confidence 33445567877777776 4667777777776544
No 58
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=52.32 E-value=41 Score=27.49 Aligned_cols=39 Identities=21% Similarity=0.113 Sum_probs=32.8
Q ss_pred ccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEe
Q 031874 68 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 106 (151)
Q Consensus 68 ~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv 106 (151)
.|+|+.|||.+++......||+-+....-||.+.+..-+
T Consensus 34 pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSv 72 (255)
T COG0024 34 PGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISV 72 (255)
T ss_pred CCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeeh
Confidence 799999999999888665899999998888877766654
No 59
>PF15573 Imm27: Immunity protein 27
Probab=47.15 E-value=33 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 031874 22 PTLAKRAEHYFTENRRVAKGLEAWKSGNSQ---DFGKLISASGL 62 (151)
Q Consensus 22 ~~~~~r~~~~v~E~~rv~~~~~al~~~d~~---~lg~lm~~sh~ 62 (151)
+++....+...+|.+.....++.++.||+. .|-++||+.++
T Consensus 17 ~~lK~~ll~~~tE~E~~lli~El~K~GDFsvK~LLiqLMN~TkD 60 (259)
T PF15573_consen 17 SELKENLLSVQTEKECLLLIIELLKKGDFSVKNLLIQLMNQTKD 60 (259)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhCCchhhHHHHHHHhcchh
Confidence 455677788889999999999999999986 78899998766
No 60
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=45.84 E-value=23 Score=22.62 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 39 ~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
..+.++|++..+..++.++..+...|....++....+++|.+..
T Consensus 21 ~Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n~G~ksl~EI~~~L 64 (66)
T PF03118_consen 21 VRAYNCLKRAGIHTVGDLVKYSEEDLLKIKNFGKKSLEEIKEKL 64 (66)
T ss_dssp HHHHHHHHCTT--BHHHHHCS-HHHHHTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCHHHHHhCCHHHHHhCCCCCHhHHHHHHHHH
Confidence 46778899999999999999998888876677666677765543
No 61
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=43.71 E-value=24 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=18.2
Q ss_pred eeccCCCCceEE--EEeccccHHHHHHHHH
Q 031874 92 RFSGAGFRGCCL--ALVDADRAEEAASYVR 119 (151)
Q Consensus 92 k~tGaG~GG~vi--alv~~~~~~~~~~~l~ 119 (151)
-++|+|.||.+| ++|++..+..--..++
T Consensus 39 e~~~gG~gg~vi~AVmVDpgav~qq~~r~q 68 (387)
T COG3064 39 EASGGGGGGSVIDAVMVDPGAVVQQYGRIQ 68 (387)
T ss_pred cccCCCCCcceeeeeEeCcHHHHHHHHHHH
Confidence 466788888888 5667766544444443
No 62
>PRK07758 hypothetical protein; Provisional
Probab=42.41 E-value=32 Score=23.97 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCC
Q 031874 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 87 (151)
Q Consensus 39 ~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~G 87 (151)
..+.++|++..+..++++...+...|...-++..--+++|.+...+ .|
T Consensus 44 vRA~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E-~G 91 (95)
T PRK07758 44 APARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEE-SG 91 (95)
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH-cC
Confidence 3567888889999999999998888887667777788888777776 55
No 63
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=41.06 E-value=51 Score=27.87 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHH
Q 031874 70 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 119 (151)
Q Consensus 70 vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~ 119 (151)
+|.+.|-.++++|.+ .|.=..++|+-+ |-.|-.++.++++++.+.++
T Consensus 42 l~~e~Lr~i~diAek-yG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 42 LSAETLRKIADIAEK-YGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred cCHHHHHHHHHHHHH-hCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 355666677777776 665556777766 66666677777777777776
No 64
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=39.63 E-value=74 Score=20.17 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=9.8
Q ss_pred cCCCCHHHHHHHhccCCH
Q 031874 5 LCNVEEEVYEAHKNELEP 22 (151)
Q Consensus 5 L~~~~~~~l~~~~~~l~~ 22 (151)
|..++.++|..++..|..
T Consensus 18 Ls~lSv~EL~~RIa~L~a 35 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEA 35 (59)
T ss_pred chhcCHHHHHHHHHHHHH
Confidence 555566666655554443
No 65
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=35.49 E-value=1.3e+02 Score=21.67 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhhhhcccC
Q 031874 19 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG--LSSIYNYEC 70 (151)
Q Consensus 19 ~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh--~~l~~~~~v 70 (151)
.+++....+...+++.+-.-...+..|....++.|..+|..+. .++...||-
T Consensus 55 ~l~~~~q~~~~~lL~~IL~nda~Ir~Llq~rl~eL~~li~~~~rq~~l~~aYg~ 108 (121)
T PRK10548 55 DISTVMQEQLRPMLRQILDNEAELKQLLQQRMDELSSLIGQSTRQKSVNSAYGQ 108 (121)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 3556666666666666655566667777777888888887653 233344543
No 66
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=33.48 E-value=2.7e+02 Score=22.84 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCcee--eeccCCCCceEEEEeccccHHHHHHHHHHHhHhh
Q 031874 74 PLIQLNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 125 (151)
Q Consensus 74 eld~l~~~a~~~~Ga~Ga--k~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~ 125 (151)
.+.-+ +.+.+..| +|- -+.|+.+|=-.+-.+.++.+.++++.+.+.+.+.
T Consensus 41 d~~i~-~~~~~~~~-~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~ 92 (268)
T TIGR01743 41 DIVII-KETFEKFG-IGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEP 92 (268)
T ss_pred hHHHH-HHHHHhcC-CceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHC
Confidence 44344 44444366 666 5667766655566666677888888888877753
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=31.77 E-value=3e+02 Score=22.82 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHHHH-HHHHHHHHhc--CCHHHHHHHHHHHHHhhhhcccCCC---hHHHHHHH
Q 031874 7 NVEEEVYEAHKNELEPTLAKRAEHYFTENRR-VAKGLEAWKS--GNSQDFGKLISASGLSSIYNYECGS---EPLIQLNE 80 (151)
Q Consensus 7 ~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~r-v~~~~~al~~--~d~~~lg~lm~~sh~~l~~~~~vs~---peld~l~~ 80 (151)
.++.+++......+..........-+...++ +..++..+.. ...-.++.+......-. +.++++. .++-.++.
T Consensus 269 ~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~-~~~~~~~~~~~~~~~~l~ 347 (394)
T PRK00411 269 KVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC-EELGYEPRTHTRFYEYIN 347 (394)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HHcCCCcCcHHHHHHHHH
Confidence 4666666666655533333333333333332 3333333321 13346777777665433 3466654 56656666
Q ss_pred HHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHH
Q 031874 81 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 121 (151)
Q Consensus 81 ~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~ 121 (151)
.... .|....+..|.|..|-.--+.-.-..+.+.+++...
T Consensus 348 ~L~~-~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK00411 348 KLDM-LGIINTRYSGKGGRGRTRLISLSYDPEDVLERLLED 387 (394)
T ss_pred HHHh-cCCeEEEEecCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 6665 898888887777544333332223345666666543
No 68
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=31.60 E-value=2.4e+02 Score=23.98 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChH-HHHHHHHHHhCCCC-ceeeeccCCCCceEEEEeccccHHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEP-LIQLNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAA 115 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~pe-ld~l~~~a~~~~Ga-~Gak~tGaG~GG~vialv~~~~~~~~~ 115 (151)
+...++.+++||-..+++++.. -++-.-.+.. -.+|+.......|- .=-=+||-++.| ...++
T Consensus 4 ~~~l~e~l~~GdrrAlARaITl-----vEs~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaG----------KSTli 68 (323)
T COG1703 4 VDELIERLLAGDRRALARAITL-----VESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAG----------KSTLI 68 (323)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-----HhcCCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCc----------hHHHH
Confidence 3456778899999999999883 2211111111 23444444322231 111245554332 34455
Q ss_pred HHHHHHhHhhchhHhhhcCCCceEEEeecCC
Q 031874 116 SYVRSEYFELQPELASQLNADSAVLICKPGD 146 (151)
Q Consensus 116 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 146 (151)
+++-..|.+. |+...+..+.|++
T Consensus 69 ~~L~~~l~~~--------G~rVaVlAVDPSS 91 (323)
T COG1703 69 EALGRELRER--------GHRVAVLAVDPSS 91 (323)
T ss_pred HHHHHHHHHC--------CcEEEEEEECCCC
Confidence 5555566554 7777788877765
No 69
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=31.49 E-value=1.4e+02 Score=20.81 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHH
Q 031874 22 PTLAKRAEHYFTENRRVAKGLEAWKSG--NSQDFGKLISA 59 (151)
Q Consensus 22 ~~~~~r~~~~v~E~~rv~~~~~al~~~--d~~~lg~lm~~ 59 (151)
+..|..+++++..|+|..++...|++. ++...|+-+.+
T Consensus 53 e~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~ 92 (97)
T PF15136_consen 53 EQQYQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELER 92 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999888764 56666665543
No 70
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=30.95 E-value=48 Score=24.64 Aligned_cols=9 Identities=22% Similarity=0.206 Sum_probs=4.5
Q ss_pred ccCCCCceE
Q 031874 94 SGAGFRGCC 102 (151)
Q Consensus 94 tGaG~GG~v 102 (151)
.|+|+||+=
T Consensus 2 ~~g~GG~s~ 10 (148)
T KOG3304|consen 2 AQGGGGGSR 10 (148)
T ss_pred CCCCCCCCc
Confidence 444555554
No 71
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=30.66 E-value=1.2e+02 Score=26.35 Aligned_cols=78 Identities=14% Similarity=0.006 Sum_probs=56.0
Q ss_pred HHHHHHHhccCCHHH------HHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhhhhcccCC-ChHHHHHHH
Q 031874 10 EEVYEAHKNELEPTL------AKRAEHYFTENRRVAKGLEAWKSGNSQ--DFGKLISASGLSSIYNYECG-SEPLIQLNE 80 (151)
Q Consensus 10 ~~~l~~~~~~l~~~~------~~r~~~~v~E~~rv~~~~~al~~~d~~--~lg~lm~~sh~~l~~~~~vs-~peld~l~~ 80 (151)
.++..+.+..++|+. ..|.+.+..++.--....++++.|..- ..+-++...|.-+-+..|+- .+|+-.-++
T Consensus 27 veeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~~ldl~~vlk~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe 106 (388)
T COG1916 27 VEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVLKEGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIE 106 (388)
T ss_pred HHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcccCCHHHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 345555555554433 357777776666556788899999877 67778888888888889995 688888888
Q ss_pred HHHhCCCC
Q 031874 81 ILQRAPGV 88 (151)
Q Consensus 81 ~a~~~~Ga 88 (151)
.|++ .|+
T Consensus 107 ~A~e-~ga 113 (388)
T COG1916 107 AARE-LGA 113 (388)
T ss_pred HHHH-cCC
Confidence 8887 453
No 72
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.15 E-value=1.2e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~ 123 (151)
.+|.+|.+.+.+.+ .|++|+|+ -|||-+..+....+++..+. +|.
T Consensus 120 ~~~GLD~Ll~R~~~-y~~~GaKw------RsViki~~~~~I~~na~qla-ryA 164 (296)
T PRK05377 120 PIPNLDDLLDRAVE-KGIFGTKM------RSVIKEANEQGIAAVVAQQF-EVA 164 (296)
T ss_pred cCCCHHHHHHHHHH-hCCCccce------eeeecCCCHHHHHHHHHHHH-HHH
Confidence 47999999999998 89999998 78888765444444444433 444
No 73
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=29.11 E-value=1.4e+02 Score=25.32 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=26.1
Q ss_pred hhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEE
Q 031874 64 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 104 (151)
Q Consensus 64 l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~via 104 (151)
.+-+|+-+.||| ..+..|-+-+-+.|.|-||++-.
T Consensus 195 ~~aHyetTGPEI------w~QtkGniDaFia~~GTGGTiaG 229 (391)
T KOG1481|consen 195 WLAHYETTGPEI------WHQTKGNIDAFIAGTGTGGTIAG 229 (391)
T ss_pred HHHHhcCcCcHH------HHhhcCCcceEEeccCCCcchHH
Confidence 345688899987 22346778899999999998644
No 74
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=29.03 E-value=3.6e+02 Score=22.83 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCceeeeccCCCCceEEEEeccc
Q 031874 77 QLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 109 (151)
Q Consensus 77 ~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~ 109 (151)
.|-..... .|++++=+-|+|+|..+.+|..+.
T Consensus 276 ~Ld~i~~l-~gvl~~lipgaGggdaif~l~~~~ 307 (337)
T COG3890 276 ALDSIFDL-LGVLCDLIPGAGGGDAIFLLYRPN 307 (337)
T ss_pred hhhhHHhc-cCceEeecccCCCCceEEEEeccc
Confidence 34444444 899999999999999999988654
No 75
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=27.66 E-value=1e+02 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=23.3
Q ss_pred HHHHHHhCCCC-ceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhc
Q 031874 78 LNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 126 (151)
Q Consensus 78 l~~~a~~~~Ga-~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~ 126 (151)
+.+.+++ .|. +--==.||||++ .....+++.+.+.+...+.+
T Consensus 193 ~~~~~~~-~g~~l~~ldiGGGf~~------~~~~~~~~~~~i~~~l~~~~ 235 (394)
T cd06831 193 VFDMAEE-FGFKMNMLDIGGGFTG------SEIQLEEVNHVIRPLLDVYF 235 (394)
T ss_pred HHHHHHH-CCCCCCEEEeCCCcCC------CCCCHHHHHHHHHHHHHHhc
Confidence 4455554 332 222336999986 22346667777766665543
No 76
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=26.91 E-value=3.2e+02 Score=21.58 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=39.0
Q ss_pred hcccCCChH------HHHHHHHHHhCCCC-ceeeeccCC------CCceEEEEeccccHHHHHHHHHHHhHhhch
Q 031874 66 YNYECGSEP------LIQLNEILQRAPGV-FGARFSGAG------FRGCCLALVDADRAEEAASYVRSEYFELQP 127 (151)
Q Consensus 66 ~~~~vs~pe------ld~l~~~a~~~~Ga-~Gak~tGaG------~GG~vialv~~~~~~~~~~~l~~~y~~~~~ 127 (151)
..||+..|. .++..+.+.+ .|- +--|+...+ .||-.+.+-.++.+.+-.+.|.+...+..|
T Consensus 20 ~~yGI~~~~~~~~~~~~ea~~~a~~-ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p 93 (222)
T PF13549_consen 20 AAYGIPVPPTRLVTSAEEAVAAAEE-IGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAAHHP 93 (222)
T ss_dssp HTTT------EEESSHHHHHHHHHH-H-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHHH-T
T ss_pred HHcCcCCCCeeEeCCHHHHHHHHHH-hCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHHhCC
Confidence 457887544 3678888877 342 566988887 689999998888888888888888877665
No 77
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=26.83 E-value=1.9e+02 Score=22.55 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCC-ceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHh
Q 031874 51 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 51 ~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga-~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
..+..||.+.. .|. .+.|+...+..+-..|+. .|+ |...=-=.+..|-+..+.+..+++.+-.++.+ |..
T Consensus 22 ~slk~L~k~g~-~l~-~i~i~~~~lk~F~k~AkK-yGV~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~-~~~ 92 (204)
T PF12687_consen 22 QSLKKLLKQGK-GLK-NIEITDEDLKEFKKEAKK-YGVDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKE-FSA 92 (204)
T ss_pred eeHHHHHhcCC-Cce-EEecCHhhHHHHHHHHHH-cCCceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHH-HHH
Confidence 45667777533 565 589999999999999998 898 44433112222577888877777777666653 443
No 78
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=25.51 E-value=2.3e+02 Score=19.58 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 30 ~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
.+-.|+.+..+-...+....-+.||.+-..+. |- .++|+..+++.+.+..
T Consensus 6 ~I~~eIekLqe~lk~~e~keaERigr~AlKaG--L~-eieI~d~eL~~~FeeI 55 (92)
T PF07820_consen 6 KIREEIEKLQEQLKQAETKEAERIGRIALKAG--LG-EIEISDAELQAAFEEI 55 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc-cccCCHHHHHHHHHHH
Confidence 45566777777777777777888999988755 44 4789998987655443
No 79
>PRK05182 DNA-directed RNA polymerase subunit alpha; Provisional
Probab=24.95 E-value=73 Score=26.60 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCC
Q 031874 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 87 (151)
Q Consensus 30 ~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~G 87 (151)
.-+.+......+.++|++.++..++.|+..+...|..--+..--.++++.+...+ .|
T Consensus 249 ~~I~~L~LS~R~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~L~~-~g 305 (310)
T PRK05182 249 RPIEELELSVRSYNCLKRAGINTIGDLVQRTEEELLKTRNLGKKSLEEIKEKLAE-LG 305 (310)
T ss_pred ccHHHhccchHHHHHHHHcCCcCHHHHHhCCHHHHhcCCCCChhhHHHHHHHHHH-cC
Confidence 3467777778899999999999999999999888876666666677777777765 44
No 80
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=24.87 E-value=2.8e+02 Score=20.24 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH---HHHHhhhhcccCCChHHHHHHHHHH
Q 031874 19 ELEPTLAKRAEHYFTENRRVAKGLEAWKS--GNSQDFGKLIS---ASGLSSIYNYECGSEPLIQLNEILQ 83 (151)
Q Consensus 19 ~l~~~~~~r~~~~v~E~~rv~~~~~al~~--~d~~~lg~lm~---~sh~~l~~~~~vs~peld~l~~~a~ 83 (151)
..|+++..|-..++.+.....+..+.+.+ .|-+.+..+-+ ++...|.++++++...+|.+.+.|+
T Consensus 62 e~p~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~~~ev~~~l~~dk~~nl~~L~~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 62 EVPAELAEKREEVLAELKELEEETEPVLELLEDPEVVKNLRSDKKQNLEYLEENHGITPEMIDALYKYAK 131 (133)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 46888888888888777665544433321 23333333333 3334566789999999999988764
No 81
>PRK00068 hypothetical protein; Validated
Probab=24.07 E-value=1.5e+02 Score=28.83 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhh
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIY 66 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~ 66 (151)
..++.+|+++|||..+|+.+.+-.+.+..
T Consensus 937 ~~~a~~Alk~GDw~~yG~a~~~L~~al~~ 965 (970)
T PRK00068 937 YNKAIEAQKSGDFAEYGEALKELDDALNK 965 (970)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45777999999999999999987766653
No 82
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=23.73 E-value=93 Score=27.07 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEE-eecCCce
Q 031874 109 DRAEEAASYVRSEYFELQPELASQLNADSAVLI-CKPGDCA 148 (151)
Q Consensus 109 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~-~~~~~Ga 148 (151)
+.++.++..+++.|++. |++...|+ ++++.|.
T Consensus 236 ~~Vd~~L~kir~KY~eY--------gI~e~PfViVKADaGT 268 (403)
T TIGR02049 236 TAVDQVLSKTQKKYEEY--------GIHTQPYVIVKADAGT 268 (403)
T ss_pred HHHHHHHHHHHHHHHHc--------CCCCCCeEEEEcCCCC
Confidence 56888888999999874 88888776 5577775
No 83
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=23.73 E-value=3e+02 Score=20.69 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=54.1
Q ss_pred HHHHHHhccCCHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hhhhcccCCChH-HHHHHHHH
Q 031874 11 EVYEAHKNELEPTLA-KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL------SSIYNYECGSEP-LIQLNEIL 82 (151)
Q Consensus 11 ~~l~~~~~~l~~~~~-~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~------~l~~~~~vs~pe-ld~l~~~a 82 (151)
++|...++.+|-+-. .-+.+.+.+-..+.++++.+++.++..+-.-+...-+ .| +..|+.... ++.+....
T Consensus 6 ~d~~dfl~lIp~~~i~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~l~~yL-~~~gldv~~~i~~i~~~l 84 (179)
T PF06757_consen 6 EDFQDFLDLIPMEEIQDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKALLDYL-ESAGLDVYYYINQINDLL 84 (179)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHHHHHHH-HHCCCCHHHHHHHHHHHH
Confidence 567777788875443 3344555666677888888887766555444442211 22 235666444 66665554
Q ss_pred HhCCCCc---eeee-ccCCCCceE---EEEecccc
Q 031874 83 QRAPGVF---GARF-SGAGFRGCC---LALVDADR 110 (151)
Q Consensus 83 ~~~~Ga~---Gak~-tGaG~GG~v---ialv~~~~ 110 (151)
.- +..- .... +|+|+.|.+ +++.|.+.
T Consensus 85 ~~-~~~~p~~~~~~~~~~g~~g~~~di~~~lP~~~ 118 (179)
T PF06757_consen 85 GL-PPLNPTPSLSCSRGGGLNGFVDDILALLPRDK 118 (179)
T ss_pred cC-CcCCCCcccccccCCCHHHHHHHHHHHCCHHH
Confidence 21 2211 1111 788887764 55555444
No 84
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=23.66 E-value=1.5e+02 Score=19.70 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 031874 20 LEPTLAKRAEHYFTENRRV 38 (151)
Q Consensus 20 l~~~~~~r~~~~v~E~~rv 38 (151)
||+++.+|..+......|+
T Consensus 12 lp~E~~eRL~~Ls~~tgrt 30 (80)
T COG4710 12 LPLELKERLDNLSKNTGRT 30 (80)
T ss_pred CCHHHHHHHHHHHHhcCCc
Confidence 5666666665555555443
No 85
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=23.55 E-value=2.1e+02 Score=24.79 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=41.8
Q ss_pred CCcCCCCHHHHHHHhccCCHHHH-------HHHHHHH--HHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhhhhcccCC
Q 031874 3 PRLCNVEEEVYEAHKNELEPTLA-------KRAEHYF--TENRRVAKGLEAWKSGNS--QDFGKLISASGLSSIYNYECG 71 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l~~~~~-------~r~~~~v--~E~~rv~~~~~al~~~d~--~~lg~lm~~sh~~l~~~~~vs 71 (151)
..+.+++.+++..+.+.+.|.+. --..|++ .|.++ ++.+|++ +.|-++.++ .+++.+|++
T Consensus 225 ~~~~~~~~e~~~~~~n~v~ps~iRveADEvty~lHiilR~e~Ek------~l~~G~l~v~dLp~~W~~---~~~eylG~~ 295 (396)
T cd06460 225 EQLKDVSLENFYRAVNRVQPSLIRVEADEVTYNLHIMLRYELEK------ALIEGDLEVADLPEAWNE---KMKEYLGIR 295 (396)
T ss_pred cccccCCHHHHHHHHhhcCccceeeecchhhHHHHHHHHHHHHH------HHHcCCCCHHHHHHHHHH---HHHHHcCCC
Confidence 34667888888888888776665 2344544 44443 6667764 688888884 566668887
Q ss_pred ChH
Q 031874 72 SEP 74 (151)
Q Consensus 72 ~pe 74 (151)
.+.
T Consensus 296 ~~~ 298 (396)
T cd06460 296 PPN 298 (396)
T ss_pred CCC
Confidence 644
No 86
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=23.53 E-value=69 Score=25.88 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEec
Q 031874 72 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 107 (151)
Q Consensus 72 ~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~ 107 (151)
+|++.++.+ .++.|||+| .|++++-+
T Consensus 230 ~P~i~~~~~--------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 230 YPALKDYLG--------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred CHHHHHHhc--------CCcEEeCcC--cceEEEee
Confidence 566665522 456799998 88887643
No 87
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=23.41 E-value=2e+02 Score=18.05 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhh
Q 031874 42 LEAWKSGNSQDFGKLISASGLSSI 65 (151)
Q Consensus 42 ~~al~~~d~~~lg~lm~~sh~~l~ 65 (151)
.++.+.+||+.|..++.+...-+.
T Consensus 2 l~aa~~~dWe~l~~l~~~R~~ll~ 25 (84)
T PF05400_consen 2 LEAAEAGDWEELEELLDERQELLE 25 (84)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred hHHHhhCcHHHHHHHHHHHHHHHH
Confidence 456788999999999998776553
No 88
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=23.37 E-value=1.1e+02 Score=17.74 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=24.3
Q ss_pred HhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCC
Q 031874 62 LSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAG 97 (151)
Q Consensus 62 ~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG 97 (151)
..+.+.+++|.+.+...++...+ .|.+- +..|.|
T Consensus 24 ~~la~~~~vs~~tv~~~l~~L~~-~g~i~-~~~~~g 57 (60)
T smart00345 24 RELAAQLGVSRTTVREALSRLEA-EGLVQ-RRPGSG 57 (60)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-CCCEE-EecCCe
Confidence 34566789999999988888887 78643 444443
No 89
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.00 E-value=2.1e+02 Score=24.22 Aligned_cols=45 Identities=16% Similarity=-0.058 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH
Q 031874 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 83 (151)
Q Consensus 39 ~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~ 83 (151)
.++.+++.++|.+.|.++|.++...+-+...-.-.+.|.+++...
T Consensus 325 ~~l~~~l~~~d~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 369 (374)
T PRK11199 325 GEALELLEQGDKQAFIDSFRKVEHWFGDYAEQFLKESRSLLQQAN 369 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 467788889999999999999887665322223456666666553
No 90
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=22.82 E-value=2.2e+02 Score=18.36 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=21.2
Q ss_pred hcccCCChHHHHHHHHHHhCCCCceeeeccC
Q 031874 66 YNYECGSEPLIQLNEILQRAPGVFGARFSGA 96 (151)
Q Consensus 66 ~~~~vs~peld~l~~~a~~~~Ga~Gak~tGa 96 (151)
..++++.++++.++..+-. .|-+-||+-..
T Consensus 68 ~~l~~~~~~vE~~l~~~I~-~~~i~~~ID~~ 97 (105)
T PF01399_consen 68 KALQLSEEEVESILIDLIS-NGLIKAKIDQV 97 (105)
T ss_dssp HHHTCCHHHHHHHHHHHHH-TTSSEEEEETT
T ss_pred HHhccchHHHHHHHHHHHH-CCCEEEEEECC
Confidence 4456677777777777776 67888887544
No 91
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=22.71 E-value=4.8e+02 Score=22.15 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHh
Q 031874 27 RAEHYFTENRRV--AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQR 84 (151)
Q Consensus 27 r~~~~v~E~~rv--~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~ 84 (151)
--.++++|+.+. ..+.-||.++|-..+-.-|...+..+...|....|....+.+...+
T Consensus 268 ~q~~~lrenLrL~L~~AqlAlL~~~~~~y~~sL~~A~~wl~~yFd~~~~~~~~~l~~L~~ 327 (372)
T PF04375_consen 268 EQQFFLRENLRLRLEQAQLALLRRDQELYQQSLQRAQQWLNRYFDTDSPAVQAFLAELQQ 327 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 446788888774 5788899999999999999999999998888888877776666655
No 92
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=22.49 E-value=1.6e+02 Score=20.90 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhCCCCceeeeccCCC----C-ceEEEEeccccHHHHHHHHHHHhHhh
Q 031874 73 EPLIQLNEILQRAPGVFGARFSGAGF----R-GCCLALVDADRAEEAASYVRSEYFEL 125 (151)
Q Consensus 73 peld~l~~~a~~~~Ga~Gak~tGaG~----G-G~vialv~~~~~~~~~~~l~~~y~~~ 125 (151)
..-+.+.+...+ .|-.-.|++-.|+ | =+++.=+++++.+++++.+++..+++
T Consensus 11 ~Da~~l~~~L~~-~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 11 EDADDLSDALNE-NGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHHHH-TT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred hhHHHHHHHHHH-CCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 344677788877 7877789877661 2 23445568889999999999988765
No 93
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=22.49 E-value=2.4e+02 Score=18.56 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=26.0
Q ss_pred EEEecc-ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCc
Q 031874 103 LALVDA-DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 147 (151)
Q Consensus 103 ialv~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~G 147 (151)
+.++++ .....+.+.+.+.|.+.+|... ++.+...+..+|
T Consensus 6 Lhlt~~~~tl~~L~~eI~~~f~kLYP~~~-----~~~I~~LQD~~~ 46 (73)
T PF10407_consen 6 LHLTDPNNTLSQLKEEIEERFKKLYPNEP-----ELEILSLQDSDG 46 (73)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHHHCCCCC-----CceEEEeecCCC
Confidence 345544 4588999999999999988331 334444555544
No 94
>PF02043 Bac_chlorC: Bacteriochlorophyll C binding protein; InterPro: IPR001470 Chlorosomes, which are attached to the inner surface of the cytoplasmic membrane, consist of four polypeptides and associated pigments and lipids. The principal light-harvesting pigment of the green filamentous bacterium Chloroflexus aurantiacus is bacteriochlorophyll (Bchl) c. This pigment is either bound to, or constrained by, a small approximately 80-residue polypeptide designated Bchlc-binding protein. In C. aurantiacus, a C-terminal extension is believed to play a role in proper incorporation of the protein during chlorosome assembly []. The protein has a high degree of similarity to Bchlc-binding proteins of other photosynthetic bacteria.; GO: 0015979 photosynthesis; PDB: 2K37_A.
Probab=22.41 E-value=2.6e+02 Score=18.93 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhh-hcccCCChHHHHHHHHHHhCCCCcee
Q 031874 50 SQDFGKLISASGLSSI-YNYECGSEPLIQLNEILQRAPGVFGA 91 (151)
Q Consensus 50 ~~~lg~lm~~sh~~l~-~~~~vs~peld~l~~~a~~~~Ga~Ga 91 (151)
+-+|+++|.+-|...- +.++......++|...|- +..||+
T Consensus 13 ~gri~Ev~~dGHW~~vgdale~vgk~t~Rl~~Nay--p~lygG 53 (82)
T PF02043_consen 13 YGRILEVFIDGHWWVVGDALENVGKTTKRLNANAY--PYLYGG 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHTT--TTCCCC
T ss_pred HhHHhhheecccHHHHHHHHHHHHHHHHHHhhhcC--CcccCC
Confidence 5678888888876554 446666666778877774 566665
No 95
>TIGR02027 rpoA DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins.
Probab=22.19 E-value=93 Score=25.80 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCC
Q 031874 31 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 87 (151)
Q Consensus 31 ~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~G 87 (151)
-+.+-....++.++|++.++..++.|+..+...|..--+..--.++++.+...+ .|
T Consensus 236 ~I~~L~LSvR~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~l~~-~g 291 (297)
T TIGR02027 236 KIEELDLSVRSYNCLKRAGIHTLGELVSKSEEELLKIKNFGKKSLTEIKEKLAE-LG 291 (297)
T ss_pred cHHHhCccHHHHhHHHHcCCcCHHHHHhCCHHHHhhCCCCChhhHHHHHHHHHH-cC
Confidence 367777777899999999999999999988888776556666677777777766 44
No 96
>PF09109 Xol-1_GHMP-like: Switch protein XOL-1, GHMP-like; InterPro: IPR015193 This domain, found in sex-determining protein Xol-1, adopts a secondary structure consisting of five alpha helices and seven antiparallel beta sheets, in a beta-alpha-beta-alpha-alpha-alpha-beta-beta-alpha-beta-beta-beta arrangement. The fold of this family is structurally similar to that found in the C-terminal domain of GHMP Kinase []. The active site of the enzyme is found at the interface between this domain and the N-terminal domain.; PDB: 1MG7_B.
Probab=21.70 E-value=3.4e+02 Score=21.30 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccC--CCCceEEEEecccc-HHHHHHHHHHHhHhhchh
Q 031874 52 DFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA--GFRGCCLALVDADR-AEEAASYVRSEYFELQPE 128 (151)
Q Consensus 52 ~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGa--G~GG~vialv~~~~-~~~~~~~l~~~y~~~~~~ 128 (151)
.++.+|...++.-...-..++.+++.-++.|++..--.+.++.|= =-||.+++|=+... .+.+++.+...-.+.
T Consensus 69 ~~p~~M~~~S~~R~~~e~~~~~~~E~dc~~Ale~~~~~~e~i~GFEvQQGGILvvLkKg~F~~~~lL~~is~sI~~~--- 145 (191)
T PF09109_consen 69 NVPALMMYYSKNRVGSENNTSLQFEKDCHAALEDVNNNNEKIKGFEVQQGGILVVLKKGVFFNNELLENISKSIAEQ--- 145 (191)
T ss_dssp SHHHHHHHHHHHHCC-TT----HHHHHHHHHHHHHHHH-TTEEEEEE-SS-EEEEEETTGGG-HHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHhcCCCceeEEEeeceEEEEEeccchhhhHHHHHHHHHHHHH---
Confidence 578888765543332112356677766666653100012334432 14688888876654 455555554332221
Q ss_pred HhhhcCCCce--EEEeecCCceeeC
Q 031874 129 LASQLNADSA--VLICKPGDCARVI 151 (151)
Q Consensus 129 ~~~~~~~~~~--~~~~~~~~Ga~~~ 151 (151)
.-+.-.. +-..+|+.||+++
T Consensus 146 ---s~~~vt~VsF~lLep~~ga~~~ 167 (191)
T PF09109_consen 146 ---SKESVTQVSFDLLEPGKGAREV 167 (191)
T ss_dssp ----SS---EEEEEEE-B-B--EE-
T ss_pred ---hcCCccEEEEeeeccCCCceee
Confidence 1122222 3336799999863
No 97
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.64 E-value=3.6e+02 Score=21.30 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=39.4
Q ss_pred CcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHH-HHHHHHHhc-----CCHHHHHHHHHHHHHhhhhcccCCChHHHH
Q 031874 4 RLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRV-AKGLEAWKS-----GNSQDFGKLISASGLSSIYNYECGSEPLIQ 77 (151)
Q Consensus 4 ~L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv-~~~~~al~~-----~d~~~lg~lm~~sh~~l~~~~~vs~peld~ 77 (151)
+||++-.+.=.+.....=|+.+.|..|++..++.+ ..+.+++.. ..++.=.+.+.+-|...-+ -.+.-.+.-.
T Consensus 34 slrelglD~~~~~aa~aIpDArdRL~YVv~mTeqAA~r~lnaVea~~P~qd~L~~~a~~l~~rWq~wm~-~~i~~~~~r~ 112 (217)
T COG3143 34 SLRELGLDQAIAEAAEAIPDARDRLNYVVQMTEQAAERALNAVEASQPHQDQLEKSAKALTQRWQDWMA-RPIDLDDARE 112 (217)
T ss_pred HHHHhCcchhhHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHc-CccchHHHHH
Confidence 34444444444444444466778999999666542 233333322 2344445566666655543 2344444444
Q ss_pred HHHHH
Q 031874 78 LNEIL 82 (151)
Q Consensus 78 l~~~a 82 (151)
|+...
T Consensus 113 Lv~~t 117 (217)
T COG3143 113 LVTDT 117 (217)
T ss_pred HHHHH
Confidence 44433
No 98
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=21.60 E-value=3.2e+02 Score=25.15 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=39.6
Q ss_pred cccCCChHHHHHHHHHHhCCCCceeeeccCCCCc-eEEEEeccccHHHHHHHHHHHhHhhc---hhHhhhcCCCceEEEe
Q 031874 67 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG-CCLALVDADRAEEAASYVRSEYFELQ---PELASQLNADSAVLIC 142 (151)
Q Consensus 67 ~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG-~vialv~~~~~~~~~~~l~~~y~~~~---~~~~~~~~~~~~~~~~ 142 (151)
.||+|-.|+..+.+.... |-+. .++...+++++....+++.+.-.... |+-+-+..-+=+.-..
T Consensus 353 ~YGIteeEV~~v~d~lga------------~~~Davvlva~~~~~~~~a~~~V~~Ra~~ai~gvpeETR~a~~DGtT~yL 420 (631)
T COG2511 353 GYGITEEEVEAVRDALGA------------GEEDAVVLVAGEEERAKRALEAVIERAKEAIEGVPEETRGALPDGTTVYL 420 (631)
T ss_pred cCCCCHHHHHHHHHHhCC------------CCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcCCCHhhccCCCCCCceee
Confidence 488888888777555422 3333 44444455666666666655544433 5555433233234445
Q ss_pred ecCCceee
Q 031874 143 KPGDCARV 150 (151)
Q Consensus 143 ~~~~Ga~~ 150 (151)
.|-.|+-+
T Consensus 421 RPlPGaaR 428 (631)
T COG2511 421 RPLPGAAR 428 (631)
T ss_pred cCCCCccc
Confidence 67777654
No 99
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.40 E-value=87 Score=21.06 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 031874 29 EHYFTENRRVAKGLEAWKSGNSQDFGKL 56 (151)
Q Consensus 29 ~~~v~E~~rv~~~~~al~~~d~~~lg~l 56 (151)
..++.|...+.+-+++|.++|+..+..+
T Consensus 28 ea~~~~~gLt~eE~~aL~~~D~~~L~~l 55 (81)
T cd07922 28 SAVFEEYGLTPAERAALREGTFGALTSI 55 (81)
T ss_pred HHHHHHcCCCHHHHHHHHccCHHHHHHc
Confidence 4677888888999999999999888765
No 100
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=21.34 E-value=11 Score=30.03 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=8.0
Q ss_pred eccCCCCceEEE
Q 031874 93 FSGAGFRGCCLA 104 (151)
Q Consensus 93 ~tGaG~GG~via 104 (151)
|.|+|.|||++|
T Consensus 5 IVGsG~~G~v~A 16 (296)
T PF00732_consen 5 IVGSGAGGSVVA 16 (296)
T ss_dssp EES-SHHHHHHH
T ss_pred EECcCHHHHHHH
Confidence 678888887754
No 101
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=20.66 E-value=2.1e+02 Score=22.16 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhhh---hcccCCChHHHHHHHHHHhCCCCceeeec-cCCCCceEEEEe
Q 031874 49 NSQDFGKLISASGLSSI---YNYECGSEPLIQLNEILQRAPGVFGARFS-GAGFRGCCLALV 106 (151)
Q Consensus 49 d~~~lg~lm~~sh~~l~---~~~~vs~peld~l~~~a~~~~Ga~Gak~t-GaG~GG~vialv 106 (151)
-...+.+.+...|..++ +.-.+|++..|.+....-...+..|--+- +-|.-|+++.+.
T Consensus 108 P~aa~~~~~~l~r~~l~~~ie~~~~~~~~~dAv~ag~~a~~y~~G~~i~~~~~~~G~i~lp~ 169 (178)
T COG2410 108 PRAALAKAAGLRRHDLDRIIEDVAVSEDAVDAVLAGLAALLYSLGEAIERERGLSGSIVLPS 169 (178)
T ss_pred chHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhCcchhhccccCCceeEEecC
Confidence 34455777777777776 55667888888876655433344443333 456777777654
No 102
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.63 E-value=3.6e+02 Score=23.45 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=34.5
Q ss_pred cccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHHHHHH
Q 031874 67 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVR 119 (151)
Q Consensus 67 ~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~~~l~ 119 (151)
..++|.|.++.+++..++ .|--.+|.+=+|.| ++.+. -++|.+.|+
T Consensus 328 ~l~~s~p~~~~vv~~L~~-~G~~asrTHf~p~g------iKTda~~~ev~~vl~ 374 (380)
T COG1867 328 KLGLSAPPLEEVVEALRS-AGYEASRTHFSPTG------IKTDAPYEEVEKVLK 374 (380)
T ss_pred HhCCCCCCHHHHHHHHHh-cCceeeeeccCCcc------cccCCCHHHHHHHHH
Confidence 368999999999999998 89777788777766 55554 555555555
No 103
>PRK09213 pur operon repressor; Provisional
Probab=20.54 E-value=4.8e+02 Score=21.38 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCcee--eeccCCCCceEEEEeccccHHHHHHHHHHHhHh
Q 031874 78 LNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 78 l~~~a~~~~Ga~Ga--k~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
+++.+.+..| +|- -+.|+.+|=-.+-....+++.++.+.|.+...+
T Consensus 46 i~~~~~~~~~-~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~ 93 (271)
T PRK09213 46 IIKETFEKQG-IGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSE 93 (271)
T ss_pred HHHHHHHhcC-CceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 4444444366 666 556666665555555666788888887766544
No 104
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.47 E-value=2.1e+02 Score=23.78 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHh
Q 031874 32 FTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQR 84 (151)
Q Consensus 32 v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~ 84 (151)
..|..| -|+++|..+-.+++-+.+.+ +..++ + .|.+|+..|.+.+..
T Consensus 19 y~E~~R--LAleaLl~~G~eAy~~~L~~--E~~~~-F-LS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 19 YSESQR--LALEALLSGGPEAYYEFLKE--EGERD-F-LSSEEIQYILENAED 65 (284)
T ss_pred cCHHHH--HHHHHHHhcCHHHHHHHHHh--cCCCC-C-CCHHHHHHHHHhccC
Confidence 456664 58999999999999999987 44654 3 699999999999976
No 105
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=20.36 E-value=6.2e+02 Score=22.55 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=74.8
Q ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH
Q 031874 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVA-KGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 83 (151)
Q Consensus 5 L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv~-~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~ 83 (151)
+......++.+....+|++...-+..--..|..+. ..++.+++|-++.| .-.|+.-. .|+.+.-|-..|.+...
T Consensus 148 ~~~~e~~el~~l~~~IP~~~l~dyl~rR~~N~~vN~~li~l~~~Gvid~L----vig~DD~~-~~g~~~~e~~~L~~~~~ 222 (497)
T PF13552_consen 148 LSEEERKELAALKAEIPPEYLEDYLARRERNLAVNRALIDLVKEGVIDYL----VIGQDDSS-PYGQTAMEQRELEAYIE 222 (497)
T ss_pred cchhhHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE----EeccCCCC-CCCcCHHHHHHHHHHHH
Confidence 45556677888888999988887777777777665 55677777776554 22233333 38888888888888887
Q ss_pred hCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCcee
Q 031874 84 RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCAR 149 (151)
Q Consensus 84 ~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~ 149 (151)
+ .|. --| +..+ .-+|++.-.|....... ..|..|++|+.= ...|+.
T Consensus 223 ~-~~l-~~r---------v~i~---pGADEvg~~LlaRa~n~------~~~~~P~v~v~Ys~~~g~~ 269 (497)
T PF13552_consen 223 E-LGL-SDR---------VMIY---PGADEVGLLLLARAYNE------YKGYKPRVYVRYSSGNGAD 269 (497)
T ss_pred h-cCC-CCc---------eeee---CChhHHHHHHHHHHHHH------hcCCCceEEEEeCCCCCCc
Confidence 6 553 222 2222 22555555554443332 247789999865 455544
No 106
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=20.27 E-value=1.4e+02 Score=18.05 Aligned_cols=31 Identities=19% Similarity=0.020 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhhcccCCChHHHHHHH
Q 031874 50 SQDFGKLISASGLSSIYNYECGSEPLIQLNE 80 (151)
Q Consensus 50 ~~~lg~lm~~sh~~l~~~~~vs~peld~l~~ 80 (151)
+..+-+-++.-|..+++-|+.-=||++.++.
T Consensus 9 ~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~ 39 (53)
T PF08060_consen 9 LDDIDKEINLLHMRLREWYSWHFPELESLVP 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHcC
Confidence 3456667777788899999988999997654
No 107
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=20.06 E-value=1.6e+02 Score=19.65 Aligned_cols=30 Identities=7% Similarity=-0.062 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 031874 49 NSQDFGKLISASGLSSIYNYECGSEPLIQL 78 (151)
Q Consensus 49 d~~~lg~lm~~sh~~l~~~~~vs~peld~l 78 (151)
++..+.+-+-..|..+-..+|+|..+||.+
T Consensus 4 ~l~~ia~~LG~~Wk~lar~LGlse~~Id~I 33 (86)
T cd08779 4 NLLSIAGRLGLDWQAIGLHLGLSYRELQRI 33 (86)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 345555666666666655566666666644
Done!