Query 031874
Match_columns 151
No_of_seqs 101 out of 1029
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 3E-32 1E-36 237.3 14.4 127 23-151 381-518 (520)
2 2a2c_A N-acetylgalactosamine k 99.9 5.5E-27 1.9E-31 201.7 14.8 125 23-151 347-475 (478)
3 1pie_A Galactokinase; galactos 99.9 4E-26 1.4E-30 192.8 18.3 142 3-151 274-416 (419)
4 2cz9_A Probable galactokinase; 99.9 2.5E-25 8.6E-30 182.3 17.5 125 18-150 226-350 (350)
5 1wuu_A Galactokinase; galactos 99.9 4.1E-25 1.4E-29 185.4 18.1 138 3-151 260-397 (399)
6 1kvk_A MK, mevalonate kinase; 99.8 3E-20 1E-24 155.4 11.4 115 23-150 263-379 (395)
7 3gon_A Phosphomevalonate kinas 99.8 5.8E-20 2E-24 148.7 11.8 88 31-120 229-318 (335)
8 3k85_A D-glycero-D-manno-hepto 99.8 2.3E-20 7.9E-25 155.1 6.6 92 26-120 229-321 (357)
9 4hac_A Mevalonate kinase; GHMP 99.7 1.7E-16 5.7E-21 130.0 15.2 97 38-150 223-320 (321)
10 3k17_A LIN0012 protein; protei 99.7 1.3E-16 4.4E-21 133.0 12.1 91 27-120 243-341 (365)
11 2hfs_A Mevalonate kinase, puta 99.7 3.3E-16 1.1E-20 127.4 12.7 103 37-150 229-332 (332)
12 2x7i_A Mevalonate kinase; tran 99.7 5.9E-16 2E-20 124.7 11.9 85 36-122 212-297 (308)
13 2oi2_A Mevalonate kinase; enzy 99.6 3.2E-15 1.1E-19 119.1 12.9 83 38-122 200-283 (292)
14 2pg9_A Phosphomevalonate kinas 99.6 3.2E-15 1.1E-19 123.1 12.7 84 35-120 235-320 (337)
15 1kkh_A Mevalonate kinase; mixe 99.5 3.3E-13 1.1E-17 109.0 15.2 77 41-120 229-305 (317)
16 1h72_C HK, homoserine kinase; 99.4 4.3E-13 1.5E-17 107.2 10.0 102 29-151 193-296 (296)
17 3qt5_A Mevalonate diphosphate 99.3 3.4E-11 1.2E-15 99.1 12.0 106 31-151 214-331 (332)
18 2gs8_A Mevalonate pyrophosphat 99.2 2E-10 6.9E-15 93.0 14.8 99 34-150 209-317 (317)
19 3hul_A HSK, HK, homoserine kin 99.2 6.4E-11 2.2E-15 96.0 11.0 102 31-150 184-288 (298)
20 3pyf_A 4-diphosphocytidyl-2-C- 99.0 1E-09 3.4E-14 89.3 6.8 96 37-151 202-300 (306)
21 1fi4_A Mevalonate 5-diphosphat 98.5 1.1E-06 3.6E-11 74.3 12.8 87 35-123 251-348 (416)
22 2hke_A Diphosphomevalonate dec 98.5 1.6E-06 5.5E-11 72.2 13.0 89 34-124 221-320 (380)
23 3f0n_A Mevalonate pyrophosphat 98.4 2.8E-06 9.7E-11 72.0 12.8 94 29-124 240-346 (414)
24 3lto_A Mevalonate diphosphate 98.3 3.6E-06 1.2E-10 69.2 10.4 89 34-124 212-310 (323)
25 1uek_A 4-(cytidine 5'-diphosph 98.2 2.6E-06 8.8E-11 67.4 6.9 59 71-147 209-268 (275)
26 2v8p_A 4-diphosphocytidyl-2-C- 97.8 2.6E-06 8.8E-11 67.4 -0.9 70 38-116 189-260 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 96.8 0.00065 2.2E-08 54.1 2.9 43 71-118 218-261 (283)
28 3m05_A Uncharacterized protein 73.0 6.3 0.00022 27.3 4.9 53 72-125 15-72 (114)
29 2eg2_A Nitrogen regulatory pro 60.9 34 0.0012 22.8 6.8 53 71-124 9-83 (112)
30 1vfj_A Nitrogen regulatory pro 60.6 32 0.0011 23.0 6.5 53 71-124 9-83 (116)
31 2j9c_A GLNK1, hypothetical nit 59.2 25 0.00084 23.9 5.8 53 71-124 11-85 (119)
32 3k4g_A DNA-directed RNA polyme 52.7 9.2 0.00032 25.1 2.5 56 37-93 19-75 (86)
33 2cz4_A Hypothetical protein TT 52.2 53 0.0018 22.4 6.6 52 71-123 33-98 (119)
34 3bzq_A Nitrogen regulatory pro 50.1 50 0.0017 21.9 6.1 53 71-124 11-85 (114)
35 2o66_A PII protein; regulation 44.0 79 0.0027 22.0 7.3 53 71-124 21-96 (135)
36 2gw8_A PII signal transduction 43.4 70 0.0024 21.2 6.8 53 71-124 11-85 (114)
37 1o51_A Hypothetical protein TM 41.6 50 0.0017 22.4 5.0 49 72-121 29-97 (114)
38 2gff_A LSRG protein; dimeric a 41.1 65 0.0022 20.5 5.4 71 77-147 24-96 (106)
39 2ns1_B Nitrogen regulatory pro 40.8 79 0.0027 21.1 8.1 53 71-124 13-87 (116)
40 3e8o_A Uncharacterized protein 39.2 81 0.0028 20.8 6.6 73 77-149 42-116 (119)
41 1y0h_A Hypothetical protein RV 38.3 63 0.0021 20.2 4.9 66 77-143 28-95 (102)
42 3t9z_A GLNK3, nitrogen regulat 37.2 63 0.0021 22.0 4.9 52 71-123 9-82 (118)
43 1hwu_A PII protein; herbaspiri 36.2 91 0.0031 20.5 7.4 53 71-124 9-83 (112)
44 1z3e_B DNA-directed RNA polyme 34.3 18 0.00061 22.9 1.6 48 39-87 18-65 (73)
45 3ncq_A Nitrogen regulatory pro 33.8 67 0.0023 21.9 4.7 52 71-123 9-82 (119)
46 3h3m_A Flagellar protein FLIT; 30.8 38 0.0013 23.5 3.0 41 19-59 68-108 (126)
47 3p0b_A TT1467 protein; glycosi 30.2 2.6E+02 0.0089 24.1 8.7 109 21-140 89-200 (540)
48 2i9o_A MHB8A peptide; beta-hai 27.2 55 0.0019 17.5 2.5 11 110-120 22-32 (37)
49 3gfk_B DNA-directed RNA polyme 26.7 14 0.00049 23.8 0.1 49 38-87 24-72 (79)
50 4hyz_A Uncharacterized protein 26.5 69 0.0024 21.4 3.7 49 37-91 19-67 (114)
51 2qar_B Telsam domain; polymer, 26.4 1.2E+02 0.004 19.8 4.7 35 4-38 47-81 (93)
52 4dn9_A Antibiotic biosynthesis 25.6 57 0.0019 22.0 3.1 69 79-147 45-115 (122)
53 2b0l_A GTP-sensing transcripti 25.4 1.2E+02 0.0043 19.6 4.7 44 63-109 48-91 (102)
54 1tuv_A Protein YGIN; menadione 24.9 1.5E+02 0.005 19.3 6.0 73 77-150 26-108 (114)
55 1xn7_A Hypothetical protein YH 24.9 66 0.0023 20.2 3.1 32 64-97 22-55 (78)
56 2o7a_A Lysozyme; protein foldi 23.7 50 0.0017 22.8 2.5 57 39-102 57-113 (124)
57 3nkz_A Flagellar protein FLIT; 22.1 1E+02 0.0035 21.1 3.9 42 19-60 58-99 (123)
58 2i7u_A Four-alpha-helix bundle 21.6 11 0.00039 22.4 -1.0 13 95-107 30-42 (62)
59 4aff_A Nitrogen regulatory pro 20.8 2E+02 0.0067 19.3 6.5 52 71-123 9-82 (116)
60 3lax_A Phenylacetate-coenzyme 20.6 1.3E+02 0.0045 19.0 4.1 65 70-144 14-89 (109)
61 4hl9_A Antibiotic biosynthesis 20.2 2E+02 0.0068 19.1 6.3 54 77-130 46-101 (118)
62 1coo_A RNA polymerase alpha su 20.1 33 0.0011 22.9 0.9 56 32-88 26-81 (98)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.98 E-value=3e-32 Score=237.26 Aligned_cols=127 Identities=30% Similarity=0.527 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeecc
Q 031874 23 TLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 95 (151)
Q Consensus 23 ~~~~r~~~~v~E~~rv~~~~~al~~~-------d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tG 95 (151)
.+++|++|+++|+.||.+++++|+++ |++.||++|++||.+||++|+||||++|.|++++++ .|++|+||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~GarlTG 459 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTG 459 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEec
Confidence 47899999999999999999999997 599999999999999999999999999999999998 8999999999
Q ss_pred CCCCceEEEEe---ccccHHHHHHHHHHHhHhh-chhHhhhcCCCceEEEeecCCceeeC
Q 031874 96 AGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 96 aG~GG~vialv---~~~~~~~~~~~l~~~y~~~-~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
||||||+|+|+ +++.++++++++.+.|+++ +|++.+. ++++.+|+++|++||+++
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~-~~~~~~~~~~p~~GA~i~ 518 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDE-ELKDAIIVSKPALGTCLY 518 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHH-HHHHHEEECCCCCCSEEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEecCCCceEEe
Confidence 99999999999 8899999999999999866 3654432 557899999999999973
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.95 E-value=5.5e-27 Score=201.75 Aligned_cols=125 Identities=30% Similarity=0.491 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCC
Q 031874 23 TLAKRAEHYFTENRRVAKGLEAWKS---GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 99 (151)
Q Consensus 23 ~~~~r~~~~v~E~~rv~~~~~al~~---~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~G 99 (151)
.+++|+.|++.|+.|+.+++++|.+ +|++.||++|+++|.++++.|++|||++|+|++.+++ .|++|+||||||||
T Consensus 347 ~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~G 425 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWG 425 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCc
Confidence 4678999999999999999999999 9999999999999999999899999999999999998 89999999999999
Q ss_pred ceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCC-CceEEEeecCCceeeC
Q 031874 100 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNA-DSAVLICKPGDCARVI 151 (151)
Q Consensus 100 G~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~-~~~~~~~~~~~Ga~~~ 151 (151)
||+++|++++.+++++++|.+.|++.++.. |++ .+.+|+++|++||+++
T Consensus 426 G~viaLv~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 426 GCTVSMVPADKLPSFLANVHKAYYQRSDGS---LAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHC------------CCSEEEECCBCCCEEE
T ss_pred cEEEEEEcHHHHHHHHHHHHHHHHHhcCcc---ccCCCCcEEEEcCCCCeEee
Confidence 999999999899999999999999863210 122 4678999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=4e-26 Score=192.76 Aligned_cols=142 Identities=32% Similarity=0.489 Sum_probs=129.4
Q ss_pred CCcCCCCHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEI 81 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l-~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~ 81 (151)
..|++++.+++..+++.+ ++..++|+.|++.|+.|+.+++++|.++|++.||++|+++|.++++.|++++|++|.+++.
T Consensus 274 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~ 353 (419)
T 1pie_A 274 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAET 353 (419)
T ss_dssp SSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 357788888888888777 4568889999999999999999999999999999999999999998899999999999999
Q ss_pred HHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 82 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 82 a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
+++.+|++|+||||||||||+++|++++.+++++++|.+.|++. ++.++.+|+++|++||+++
T Consensus 354 a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~-------~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 354 AQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred HHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHh-------cCCCCeEEEEcCCCCeeec
Confidence 99833999999999999999999999988999999999999875 5888999999999999875
No 4
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.93 E-value=2.5e-25 Score=182.26 Aligned_cols=125 Identities=30% Similarity=0.451 Sum_probs=116.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCC
Q 031874 18 NELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAG 97 (151)
Q Consensus 18 ~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG 97 (151)
..+|+..++++.|++.|+.|+..+.++|.++|++.||++|+++|++|++.+++++|+++++++.+++ .|++|+||||+|
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG 304 (350)
T 2cz9_A 226 SKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAG 304 (350)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSC
T ss_pred hhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCC
Confidence 3578888889999999999999999999999999999999999999998899999999999999998 799999999999
Q ss_pred CCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceee
Q 031874 98 FRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 150 (151)
Q Consensus 98 ~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 150 (151)
||||+++|++++.++++++++.+.|++. ||+++.+|+++|++||++
T Consensus 305 ~G~~v~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 305 FGGSAIALVDKEDAETIGEEILREYLKR-------FPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp SSSEEEEEEEGGGHHHHHHHHHHHHHHH-------CCSCCEEEEECEECCSBC
T ss_pred CceEEEEEEchhhHHHHHHHHHHHHHHh-------hCCCCcEEEecCCCCCCC
Confidence 9999999999888999999999998875 588899999999999985
No 5
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.93 E-value=4.1e-25 Score=185.37 Aligned_cols=138 Identities=31% Similarity=0.497 Sum_probs=126.9
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 031874 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 82 (151)
Q Consensus 3 ~~L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a 82 (151)
..+|+++.+++.+.+..+++..++|+.|++.|+.|+.+++++|.++|++.||++|+++|.++++.+++++|++|++++.+
T Consensus 260 ~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a 339 (399)
T 1wuu_A 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAA 339 (399)
T ss_dssp SSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 35788888889888899999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 83 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 83 ~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
++..|++|+||||+|||||+++|++++.++++++.+.+.| +..+.+|++.|++||+++
T Consensus 340 ~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 340 LAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp HTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC-----------SSCCEEEEECCCCCSEEC
T ss_pred HhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh-----------CCCCcEEEEcCCCCeeec
Confidence 8735999999999999999999999888999999998765 456789999999999985
No 6
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.83 E-value=3e-20 Score=155.44 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCce
Q 031874 23 TLAKRAEHYFTENRRVAKG-LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGC 101 (151)
Q Consensus 23 ~~~~r~~~~v~E~~rv~~~-~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~ 101 (151)
...+|+.|++.|+.++... ..+|.++|++.||++|+++|.++++ |++++|++|++++.+++ .|+ |+||||||||||
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~ 339 (395)
T 1kvk_A 263 PLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGC 339 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCE
Confidence 3567889999999988776 6788889999999999999999997 99999999999999998 799 999999999999
Q ss_pred EEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 102 CLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 102 vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
+++|++++..+++++.+.+.|++. ++ .+|+++ ++.|+++
T Consensus 340 v~~l~~~~~~~~~~~~~~~~~~~~--------g~--~~~~~~~~~~G~~v 379 (395)
T 1kvk_A 340 GITLLKPGLERAKVEAAKQALTGC--------GF--DCWETSIGAPGVSM 379 (395)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHT--------TC--EEEEEEESCCCSEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHHc--------CC--EEEEEecCCCcEEE
Confidence 999999888888998998888764 43 588888 8999986
No 7
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.82 E-value=5.8e-20 Score=148.71 Aligned_cols=88 Identities=20% Similarity=0.123 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhh-cccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc
Q 031874 31 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 109 (151)
Q Consensus 31 ~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~-~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~ 109 (151)
+.....++.++.++|+++|++.||++|+++|.+|++ .+++|+|++|+|++.+++ .|+ |+||||||||||+|+|++++
T Consensus 229 ~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~ 306 (335)
T 3gon_A 229 LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDA 306 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-CCc-EEEEccccchheEEEEECCH
Confidence 345566788999999999999999999999999998 468999999999999998 785 89999999999999999753
Q ss_pred -cHHHHHHHHHH
Q 031874 110 -RAEEAASYVRS 120 (151)
Q Consensus 110 -~~~~~~~~l~~ 120 (151)
..+.+.+++++
T Consensus 307 ~~~~~i~~~~~~ 318 (335)
T 3gon_A 307 QSTKTLKNRWAD 318 (335)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 35555555544
No 8
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=2.3e-20 Score=155.14 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEE
Q 031874 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 104 (151)
Q Consensus 26 ~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~-~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~via 104 (151)
.|+.|.+.| ++.+++++|.++|++.||++|+++|.++++. ++||+|++|+|++.+++ .||+|+||||||+|||+++
T Consensus 229 ~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~Ga~GaklsGaG~gG~via 305 (357)
T 3k85_A 229 IEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMF 305 (357)
T ss_dssp THHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-SCCSEEEECCCC---CEEE
T ss_pred HHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-cCCeEeEecccCCCCEEEE
Confidence 457777765 7889999999999999999999999999976 99999999999999998 7999999999999999999
Q ss_pred EeccccHHHHHHHHHH
Q 031874 105 LVDADRAEEAASYVRS 120 (151)
Q Consensus 105 lv~~~~~~~~~~~l~~ 120 (151)
|++++..++++++|++
T Consensus 306 l~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 306 VVEPTRKEEVVRALNN 321 (357)
T ss_dssp ECCHHHHHHHHHHHHT
T ss_pred EecHHHHHHHHHHHHH
Confidence 9998888888888764
No 9
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.72 E-value=1.7e-16 Score=129.96 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASY 117 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~ 117 (151)
+.++.++|.++|++.|+++|+.+|. +++.+++++|++|++++.+++ .|++|+||||+|+|||+++|++++.++++.+.
T Consensus 223 ~~~~~~al~~~d~~~lg~~~~~~~~-~~~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~ 300 (321)
T 4hac_A 223 SRIGEQLVLSGDYASIGRLMNVNQG-LLDALGVNILELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEA 300 (321)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHH
Confidence 5678899999999999999999996 556699999999999999998 79999999999999999999977778888777
Q ss_pred HHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 118 VRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 118 l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
|++. + ..+|.++ ..+|++|
T Consensus 301 l~~~------------g--~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 301 VAGA------------G--GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHT------------T--CEEEEECBCSCSSEE
T ss_pred HHhC------------C--CeEEEEEECCCceec
Confidence 7642 3 3688888 5688876
No 10
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.69 E-value=1.3e-16 Score=133.03 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=78.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccC------CChHHHHHHHHHHhCCCCceeeeccCCCC
Q 031874 27 RAEHYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC------GSEPLIQLNEILQRAPGVFGARFSGAGFR 99 (151)
Q Consensus 27 r~~~~v~E~~-rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~v------s~peld~l~~~a~~~~Ga~Gak~tGaG~G 99 (151)
+..++++|+. ++.+++++|.++|++.||++|+++|.+|++ +++ ++|++|+|++.+++ .|++ +||||||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgG 319 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGG 319 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCC
Confidence 3678888864 578999999999999999999999999997 777 99999999999998 7988 999999999
Q ss_pred ceEEEEeccc-cHHHHHHHHHH
Q 031874 100 GCCLALVDAD-RAEEAASYVRS 120 (151)
Q Consensus 100 G~vialv~~~-~~~~~~~~l~~ 120 (151)
||+++|++++ ..+++.+++++
T Consensus 320 g~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 320 DCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp SEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 9999999864 35555555554
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.68 E-value=3.3e-16 Score=127.42 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHH
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAA 115 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~ 115 (151)
++.++.++|.++|++.|+++|+++|..++. +++++|+++++++.+++ .|++|+||||+|+|||+++|++++. ++++.
T Consensus 229 ~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~ 306 (332)
T 2hfs_A 229 IVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIV 306 (332)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHH
Confidence 456788999999999999999999977775 79999999999999998 8999999999999999999998664 68888
Q ss_pred HHHHHHhHhhchhHhhhcCCCceEEEeecCCceee
Q 031874 116 SYVRSEYFELQPELASQLNADSAVLICKPGDCARV 150 (151)
Q Consensus 116 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 150 (151)
+++.+.|... ++ ...+.+.|++||++
T Consensus 307 ~~l~~~~~~~--------~~-~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 307 KGLKAKCPEA--------KF-IWRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHHCTTC--------CE-EEEEEECCSCC---
T ss_pred HHHHHHHhcC--------Cc-eEEEEeccCCCCCC
Confidence 8888776542 21 22355679999974
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.66 E-value=5.9e-16 Score=124.73 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHH
Q 031874 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 114 (151)
Q Consensus 36 ~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~ 114 (151)
.++.++.++|.++|++.|+++|+.+|..+++ +++++|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++
T Consensus 212 ~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~ 289 (308)
T 2x7i_A 212 KLVLRASDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNI 289 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHH
Confidence 4677888999999999999999999999997 79999999999999998 89999999999999999999987 567777
Q ss_pred HHHHHHHh
Q 031874 115 ASYVRSEY 122 (151)
Q Consensus 115 ~~~l~~~y 122 (151)
.+.+.+.|
T Consensus 290 ~~~l~~~~ 297 (308)
T 2x7i_A 290 VKAVEKAG 297 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 77777543
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.63 E-value=3.2e-15 Score=119.12 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 116 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~~~ 116 (151)
+.++.++|.++|++.|+++|+++|..+++ +++++|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++.+
T Consensus 200 ~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~ 277 (292)
T 2oi2_A 200 TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAE 277 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHH
Confidence 56778999999999999999999999987 79999999999999998 89999999999999999999986 56777777
Q ss_pred HHHHHh
Q 031874 117 YVRSEY 122 (151)
Q Consensus 117 ~l~~~y 122 (151)
.+++.|
T Consensus 278 ~l~~~~ 283 (292)
T 2oi2_A 278 RLEEKG 283 (292)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 777654
No 14
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.63 E-value=3.2e-15 Score=123.13 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcc-cCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHH
Q 031874 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAE 112 (151)
Q Consensus 35 ~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~-~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~ 112 (151)
+.++.+++++|.++|++.||++|+++|..+++.. ++++|++|++++.+++ .|++ +||||||||||+++|++++ .++
T Consensus 235 ~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~~~~~~ 312 (337)
T 2pg9_A 235 KETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFDAQSTK 312 (337)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECCHHHHH
Confidence 4567789999999999999999999999998643 3999999999999998 7999 9999999999999999754 455
Q ss_pred HHHHHHHH
Q 031874 113 EAASYVRS 120 (151)
Q Consensus 113 ~~~~~l~~ 120 (151)
++.++|++
T Consensus 313 ~~~~~l~~ 320 (337)
T 2pg9_A 313 TLKNRWAD 320 (337)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.52 E-value=3.3e-13 Score=109.03 Aligned_cols=77 Identities=31% Similarity=0.443 Sum_probs=68.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccccHHHHHHHHHH
Q 031874 41 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 120 (151)
Q Consensus 41 ~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~~~~~~~~l~~ 120 (151)
..+++..+|++.|+++|+.+|..+++ +++++|+++++++.+++ .| +|+||||+|+|||+++|++++.++++.+++++
T Consensus 229 ~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~ 305 (317)
T 1kkh_A 229 IDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNK 305 (317)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHHh
Confidence 45778889999999999999988775 89999999999999998 79 99999999999999999988777777766653
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.44 E-value=4.3e-13 Score=107.25 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEe
Q 031874 29 EHYFTENRRVAKGLEAWKSGNSQDFGKLI--SASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 106 (151)
Q Consensus 29 ~~~v~E~~rv~~~~~al~~~d~~~lg~lm--~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv 106 (151)
.|.+.+..++..++++|.++|++.||++| |..|..++. +++|+++++++.+++ . ++|+||||+|+ |+++|+
T Consensus 193 ~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~-~-a~ga~~sGsG~--~v~~l~ 265 (296)
T 1h72_C 193 KDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKD-K-VYGITISGSGP--SIIAFP 265 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTT-T-EEEEEECTTSS--CEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHh-h-cceEEEecCCh--heEEEe
Confidence 47888888888999999999999999999 666666653 789999999999998 6 89999999995 999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceeeC
Q 031874 107 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 151 (151)
Q Consensus 107 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 151 (151)
+++.++++.+.+.+.|.. +++++++.|++++
T Consensus 266 ~~~~~~~~~~~l~~~~~~--------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 266 KEEFIDEVENILRDYYEN--------------TIRTEVGKGVEVV 296 (296)
T ss_dssp CGGGHHHHHHHHHHHCSC--------------EEEECBCCCCEEC
T ss_pred cHHHHHHHHHHHHHhccC--------------ceeccCCCCeEeC
Confidence 777788888888865432 1267789999875
No 17
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.28 E-value=3.4e-11 Score=99.12 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=84.0
Q ss_pred HHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccC-------CChHHHHHHHHHH---hCCCCceeeeccCCCC
Q 031874 31 YFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQ---RAPGVFGARFSGAGFR 99 (151)
Q Consensus 31 ~v~E~~-rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~v-------s~peld~l~~~a~---~~~Ga~Gak~tGaG~G 99 (151)
.+.+.. ++..++.+|.++|++.|+++|.+++..|++.|.- -+|+++++++.+. + .|++|+.++|+|
T Consensus 214 ~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~a~~SGaG-- 290 (332)
T 3qt5_A 214 WLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPCYFTMDAG-- 290 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcEEEEeCCC--
Confidence 344444 7888999999999999999999776667654433 2589999988884 6 899999999876
Q ss_pred ceEEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEe-ecCCceeeC
Q 031874 100 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLIC-KPGDCARVI 151 (151)
Q Consensus 100 G~vialv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~~~~Ga~~~ 151 (151)
+|+++|+++++++++.+++++.|.. ..++++ .|+.|++++
T Consensus 291 Ptv~~l~~~~~a~~v~~~l~~~~~~------------~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 291 PNVKVLVEKKNKQAVMEQFLKVFDE------------SKIIASDIISSGVEII 331 (332)
T ss_dssp SCEEEEEEHHHHHHHHHHHHTTSCG------------GGEEEEEBCSSCCEEC
T ss_pred CcEEEEECHHHHHHHHHHHHHhCCC------------ceEEEeccccCCcEec
Confidence 9999999887788888887754432 478888 799999875
No 18
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.24 E-value=2e-10 Score=93.00 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChH-------HHHHHH---HHHhCCCCceeeeccCCCCceEE
Q 031874 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEP-------LIQLNE---ILQRAPGVFGARFSGAGFRGCCL 103 (151)
Q Consensus 34 E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~pe-------ld~l~~---~a~~~~Ga~Gak~tGaG~GG~vi 103 (151)
...++..++.+|.++|++.||++|+++|+.|++.|..++|+ +.++.+ .++. .|++++-++|+| +|++
T Consensus 209 ~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~ 285 (317)
T 2gs8_A 209 SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVK 285 (317)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEE
Confidence 36678899999999999999999999999999877666554 445554 4455 799999999988 9999
Q ss_pred EEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCceee
Q 031874 104 ALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 150 (151)
Q Consensus 104 alv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 150 (151)
+|++++..+++.+.+.+ ...+|++++++|++|
T Consensus 286 ~l~~~~~~~~v~~~l~~---------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 286 VLCLEKDLAQLAERLGK---------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp EEEEGGGHHHHHHHHHT---------------TSEEEEEEBCCCCCC
T ss_pred EEEcHHHHHHHHHHHhc---------------CCeEEEEecCCCCCC
Confidence 99987777777766664 247999999999986
No 19
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.23 E-value=6.4e-11 Score=96.01 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecc
Q 031874 31 YFTENRRVAKGLEAWKSGNSQDFGKLISA--SGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 108 (151)
Q Consensus 31 ~v~E~~rv~~~~~al~~~d~~~lg~lm~~--sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~ 108 (151)
.+.+..++..++.+|.++|++.|+++|+. .|+..+. ..+|+++++++.+++ .|++|++|||+| +|+++|+++
T Consensus 184 ~~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~---~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~ 257 (298)
T 3hul_A 184 AVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRS---QLVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPR 257 (298)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----C---TTGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHH---hhCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECH
Confidence 44555677889999999999999999973 2333432 248999999999998 899999999999 799999987
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceee
Q 031874 109 DRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 150 (151)
Q Consensus 109 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 150 (151)
+.++++.+.+++ . +....+++++ ...|++|
T Consensus 258 ~~a~~v~~~l~~----~--------~~~~~~~~~~~~~~Ga~v 288 (298)
T 3hul_A 258 NLANKLQTSLQT----L--------EIDADVLLLDVEGSGAEV 288 (298)
T ss_dssp GGHHHHHHHHHT----T--------CCSSEEEEEEBCCCCCEE
T ss_pred HHHHHHHHHHHh----c--------CCCcEEEEcccCCCceEE
Confidence 777776666553 2 4456788888 5689887
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=98.95 E-value=1e-09 Score=89.33 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhccc-CCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHH
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE-CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEA 114 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~-vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~ 114 (151)
++..+..+|.++|++.|++.|.. .+. .+. ..+|+++++++.+++ .|++|++|||+| +|+++|++.+ .++++
T Consensus 202 ~~~~~~~al~~~d~~~l~~~l~n---~le-~~~~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~ 274 (306)
T 3pyf_A 202 EPGPVLAALAAGDPDQLAPLLGN---EMQ-AAAVSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDV 274 (306)
T ss_dssp CHHHHHHHHHHTCHHHHGGGCEE---TTH-HHHHHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHhcc---chH-HHHHHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHH
Confidence 45678899999999999998842 232 222 248999999999998 899999999998 9999999764 35555
Q ss_pred HHHHHHHhHhhchhHhhhcCCCceEEEee-cCCceeeC
Q 031874 115 ASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 151 (151)
Q Consensus 115 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~~ 151 (151)
.+.+.+ . |....+|+++ +..||+|.
T Consensus 275 ~~~l~~----~--------g~~~~v~~~~~~~~Ga~v~ 300 (306)
T 3pyf_A 275 GAQLSG----A--------GVCRTVRVATGPVPGARVV 300 (306)
T ss_dssp HHHHHH----T--------TSSSEEEEEEECCBCSEEC
T ss_pred HHHHHh----c--------CCcceEEEeecCCCCCEEe
Confidence 555543 2 5667888888 89999874
No 21
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.54 E-value=1.1e-06 Score=74.31 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCC-------ChHHHHHHHHHHhC---CC-CceeeeccCCCCceEE
Q 031874 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPLIQLNEILQRA---PG-VFGARFSGAGFRGCCL 103 (151)
Q Consensus 35 ~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs-------~peld~l~~~a~~~---~G-a~Gak~tGaG~GG~vi 103 (151)
..++..++.+|.++|++.||++|.++|..+++.+-.+ .|....+++.+.+. .| ++++-++|+| ++++
T Consensus 251 ~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~ 328 (416)
T 1fi4_A 251 PKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAV 328 (416)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEE
Confidence 4677889999999999999999999888887644433 34667777665431 27 6888899998 9999
Q ss_pred EEeccccHHHHHHHHHHHhH
Q 031874 104 ALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 104 alv~~~~~~~~~~~l~~~y~ 123 (151)
+|++++..+++.+.+++.|.
T Consensus 329 al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEGGGHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhcc
Confidence 99988788899999988776
No 22
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.52 E-value=1.6e-06 Score=72.22 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhh------cccC-CChHHHHHHHHHHhC--C-C-CceeeeccCCCCceE
Q 031874 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYEC-GSEPLIQLNEILQRA--P-G-VFGARFSGAGFRGCC 102 (151)
Q Consensus 34 E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~------~~~v-s~peld~l~~~a~~~--~-G-a~Gak~tGaG~GG~v 102 (151)
...++..++.+|.++|++.|+++|.++++.|++ .+-. -.|....+++.+.+. . | ++++.++|+| .++
T Consensus 221 ~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv 298 (380)
T 2hke_A 221 VPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANC 298 (380)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcE
Confidence 356677899999999999999999887766663 2221 367777777776431 3 8 7889999776 999
Q ss_pred EEEeccccHHHHHHHHHHHhHh
Q 031874 103 LALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 103 ialv~~~~~~~~~~~l~~~y~~ 124 (151)
++|++++..+++.+.+++.|..
T Consensus 299 ~~l~~~~~~~~v~~~l~~~~~~ 320 (380)
T 2hke_A 299 FLFVLKEDLPEAVAMLMEHFPT 320 (380)
T ss_dssp EEEEEGGGHHHHHHHHHHHSCC
T ss_pred EEEECHHHHHHHHHHHHHhccc
Confidence 9999887788888888877653
No 23
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.44 E-value=2.8e-06 Score=72.03 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccC-------CChHHHHHHHHHHhC----CCCceeeecc
Q 031874 29 EHYFTE--NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQRA----PGVFGARFSG 95 (151)
Q Consensus 29 ~~~v~E--~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~v-------s~peld~l~~~a~~~----~Ga~Gak~tG 95 (151)
.+.+.. ..++..++++|.++|++.||+++..+...|+..|.- =.|+...+++.+.+. .|++++.++|
T Consensus 240 ~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsd 319 (414)
T 3f0n_A 240 KFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFD 319 (414)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 455553 577889999999999999999988665556643222 267777777777652 2889999999
Q ss_pred CCCCceEEEEeccccHHHHHHHHHHHhHh
Q 031874 96 AGFRGCCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 96 aG~GG~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
|| .++++|+++++.+++.+.|.+.|..
T Consensus 320 AG--Pnv~vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 320 AG--PNAVIFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp SS--SCEEEEEEHHHHHHHHHHHHHHSCC
T ss_pred CC--CCEEEEEecccHHHHHHHHHHhcCC
Confidence 99 8888999888999999999876654
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.32 E-value=3.6e-06 Score=69.19 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcc------cC-CChHHHHHHHHHHh---CCCCceeeeccCCCCceEE
Q 031874 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY------EC-GSEPLIQLNEILQR---APGVFGARFSGAGFRGCCL 103 (151)
Q Consensus 34 E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~------~v-s~peld~l~~~a~~---~~Ga~Gak~tGaG~GG~vi 103 (151)
...++..++++|.++|++.|+++|..++..|+..+ -. =.|+..++++.+.+ ..|++|+.++||| ++++
T Consensus 212 ~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~ 289 (323)
T 3lto_A 212 AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVH 289 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeE
Confidence 35678899999999999999999887766666422 11 25776666666643 2689999999999 8888
Q ss_pred EEeccccHHHHHHHHHHHhHh
Q 031874 104 ALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 104 alv~~~~~~~~~~~l~~~y~~ 124 (151)
+|+++++.+++.+.+.+.|..
T Consensus 290 ~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 290 LLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp EEECGGGHHHHHHHHHHHTTT
T ss_pred EEEecccHHHHHHHHHHHhHh
Confidence 889889999999999876543
No 25
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=98.21 E-value=2.6e-06 Score=67.39 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCc
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 147 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~G 147 (151)
++|+++.+++.+++ .|++|++|||+| +|+++|++++ .++++.+.+.+ .. .+|++++++|
T Consensus 209 ~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~~--------------~~-~~~~~~~~~g 268 (275)
T 1uek_A 209 LFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRA--------------WG-RAWAGTLGGG 268 (275)
T ss_dssp HCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTT--------------TS-EEEEEEECCC
T ss_pred hChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhhh--------------cc-EEEEEEecCC
Confidence 47999999999998 799999999999 7999999764 34444444431 13 6788886655
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=97.76 E-value=2.6e-06 Score=67.42 Aligned_cols=70 Identities=13% Similarity=-0.058 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceee-eccCCCCceEEEEecccc-HHHHH
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR-FSGAGFRGCCLALVDADR-AEEAA 115 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak-~tGaG~GG~vialv~~~~-~~~~~ 115 (151)
+..+ .+|.++|++.|+++|. +.+...-...+|+++++++.+++ .|+ ++ |||+| +|+++|++++. ++++.
T Consensus 189 ~~~~-~al~~~d~~~~~~~~~---n~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~~~~ 259 (271)
T 2v8p_A 189 PEYA-EEKIQRIISGEVEEIE---NVLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELKKAA 259 (271)
T ss_dssp HHHH-HHHHHHHHTTCGGGCC---BHHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHHHHH
T ss_pred hhHH-HHhhcCCHHHHHHHHh---CChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHHHHH
Confidence 3344 7888899999988873 22332222358999999999998 797 99 99998 89999997653 44433
Q ss_pred H
Q 031874 116 S 116 (151)
Q Consensus 116 ~ 116 (151)
+
T Consensus 260 ~ 260 (271)
T 2v8p_A 260 K 260 (271)
T ss_dssp H
T ss_pred h
Confidence 3
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=96.78 E-value=0.00065 Score=54.07 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEecccc-HHHHHHHH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYV 118 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~~-~~~~~~~l 118 (151)
.+|+++++++.+++ .| |++|||+| +|+++|++++. ++++.+.+
T Consensus 218 ~~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 218 RFREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp HCHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHHC
T ss_pred cChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCHHHHHHHHHHh
Confidence 48999999999998 78 89999998 99999997543 44444443
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=73.02 E-value=6.3 Score=27.27 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHhCCCCceeeeccCCCCc-----eEEEEeccccHHHHHHHHHHHhHhh
Q 031874 72 SEPLIQLNEILQRAPGVFGARFSGAGFRG-----CCLALVDADRAEEAASYVRSEYFEL 125 (151)
Q Consensus 72 ~peld~l~~~a~~~~Ga~Gak~tGaG~GG-----~vialv~~~~~~~~~~~l~~~y~~~ 125 (151)
...+|.+.+...+ .|..|.+++-.|++| .+...++++.++++++.+.+.-+.+
T Consensus 15 p~kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 15 DKDANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 4567888888877 899988877554333 3555668889999999999876654
No 29
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=60.87 E-value=34 Score=22.77 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCC--Cc-----------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~--GG-----------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|..+ .|-|- |. -+..+++++.++++++.+.+..+.
T Consensus 9 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 9 KPFKLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 45667888888887 78766643 34332 11 477778889999999999987654
No 30
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=60.59 E-value=32 Score=23.02 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHhCCCCceee---eccCCC-C-c-----------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGAR---FSGAGF-R-G-----------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak---~tGaG~-G-G-----------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|.. ..|-|- + . -+..+|+++.++.+++++.+..+.
T Consensus 9 ~~~~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 9 RPEKLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 34567888888887 7876663 334442 1 1 588888999999999999987654
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=59.22 E-value=25 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCC-Cce------------------EEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGF-RGC------------------CLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~-GG~------------------vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|..+ .|-|- .|. +..+++++.++++++++.+..+.
T Consensus 11 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 11 RPEKLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp CGGGHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 45677888888887 78877643 34442 221 67788889999999999987654
No 32
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=52.72 E-value=9.2 Score=25.13 Aligned_cols=56 Identities=14% Similarity=0.351 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCC-ceeee
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARF 93 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga-~Gak~ 93 (151)
....+.++|++..+..+|.++..+...|..--++.-..+++|.+...+ .|- +|..+
T Consensus 19 LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~-~GL~~gm~l 75 (86)
T 3k4g_A 19 LTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS-RGLSLGMRL 75 (86)
T ss_dssp CCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT-TTCCSSCCE
T ss_pred CCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH-cCCCcCCCc
Confidence 335677889999999999999999888876666677788888888877 673 44433
No 33
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=52.19 E-value=53 Score=22.39 Aligned_cols=52 Identities=27% Similarity=0.270 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHhCCCCceeeec---cCCCC-c----------eEEEEeccccHHHHHHHHHHHhH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARFS---GAGFR-G----------CCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~t---GaG~G-G----------~vialv~~~~~~~~~~~l~~~y~ 123 (151)
..+.++.+.+++.+ .|+-|.-++ |-|-. | -+..+++++.++++++.+.+...
T Consensus 33 r~~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~ 98 (119)
T 2cz4_A 33 ESLLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYF 98 (119)
T ss_dssp EGGGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhc
Confidence 35778899999988 788776443 33321 1 46677788899999999996544
No 34
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=50.09 E-value=50 Score=21.90 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~-GG------------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|..+ .|-|- .| -+..+++++.++++++.+.+..+.
T Consensus 11 r~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 85 (114)
T 3bzq_A 11 KPFTLDDVKTSLED-AGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAART 85 (114)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 34567888888887 78766533 34442 22 377777888999999999987654
No 35
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=44.04 E-value=79 Score=22.00 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCCC-c-------------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGFR-G-------------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~G-G-------------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|..+ .|-|-- | -+..+|+++.++++++.+.+..+.
T Consensus 21 r~~k~~~V~~AL~~-~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 21 RPWRIQQVSSALLK-IGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 34567888888887 78877644 455532 2 367778889999999999987765
No 36
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=43.43 E-value=70 Score=21.23 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~-GG------------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|..+ .|-|- .| -+..+++++.++++++.+.+..+.
T Consensus 11 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 11 KPFKLDDVREALTE-IGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 35667888888887 78866643 34342 12 455666888899999999987654
No 37
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=41.63 E-value=50 Score=22.43 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHhCCCCceeee----ccCCCCc----------------eEEEEeccccHHHHHHHHHHH
Q 031874 72 SEPLIQLNEILQRAPGVFGARF----SGAGFRG----------------CCLALVDADRAEEAASYVRSE 121 (151)
Q Consensus 72 ~peld~l~~~a~~~~Ga~Gak~----tGaG~GG----------------~vialv~~~~~~~~~~~l~~~ 121 (151)
-|--++|++.+++ .|+-|+-+ .|-|..| .+.++.++++.+.+.+.+.+.
T Consensus 29 ~pL~~~Iv~~~~~-~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 29 KPLFEYLVKRAYE-LGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp EEHHHHHHHHHHH-TTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred eEHHHHHHHHHHH-CCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 4667899999998 79988866 3444444 233334566788887777754
No 38
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=41.10 E-value=65 Score=20.51 Aligned_cols=71 Identities=8% Similarity=-0.115 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCc
Q 031874 77 QLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDC 147 (151)
Q Consensus 77 ~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~G 147 (151)
.+++.++..+|+++..+.=.--.+..+.++..- ..+.+..++...+.+.+ ..+..-+...+.+.+.++-.|
T Consensus 24 ~~~~~~r~epG~l~~~~~~~~~~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~~~~~~l~~~~~i~~~~~~~~ 96 (106)
T 2gff_A 24 ANHLGSIREAGNLRFDVLRDEHIPTRFYIYEAYTDEAAVAIHKTTPHYLQCVEQLAPLMTGPRKKTVFIGLMP 96 (106)
T ss_dssp HHHHHHHTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGGBSSCCEEEEEEEEEC
T ss_pred HHHHHHhCCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhcCCcEEEEEeecCC
Confidence 344555666999888766443334455555443 45666666654444333 333332333456666654444
No 39
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=40.83 E-value=79 Score=21.07 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHhCCCCcee---eeccCCCCc-------------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGA---RFSGAGFRG-------------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Ga---k~tGaG~GG-------------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|. ...|-|--+ -+..+|+++.++++++++.+..+.
T Consensus 13 r~~~~~~v~~AL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 87 (116)
T 2ns1_B 13 KPFKLEDVREALSS-IGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYT 87 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 45677888888887 787665 344555311 455667888999999999987665
No 40
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=39.18 E-value=81 Score=20.78 Aligned_cols=73 Identities=7% Similarity=-0.019 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCcee
Q 031874 77 QLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCAR 149 (151)
Q Consensus 77 ~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~Ga~ 149 (151)
.+++.++..+||++..+.=.--.+..+.++... ..+.+..+++..+.+.+ ..+..-+--.+.+-..++.+|.-
T Consensus 42 ~~~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~~~~~~~~~~~ll~~~~~i~~~~~~~~~~ 116 (119)
T 3e8o_A 42 HIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAIN 116 (119)
T ss_dssp HHHHHHTTSTTEEEEEEEEETTSTTEEEEEEEESSHHHHHHHHTCHHHHHHHHHHHHTTCCCCEEEEEEBCSCEE
T ss_pred HHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcCCCEEEEEecccccc
Confidence 345555666999988776543345556666553 46777777775555544 33333234456676666666654
No 41
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=38.31 E-value=63 Score=20.18 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCceeeeccCCCCceEEEEecc-ccHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEee
Q 031874 77 QLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQ-PELASQLNADSAVLICK 143 (151)
Q Consensus 77 ~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~-~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~ 143 (151)
.+++.++..+|+++..+.=. -.+..+.++.. +..+.+..++...+.+.+ ..+..-+.-.+.+...+
T Consensus 28 ~~~~~~~~epG~l~~~~~~~-~~~~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~~~l~~~~~i~~~~ 95 (102)
T 1y0h_A 28 AMITPTRAEDGCRSYDLYES-ADGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLA 95 (102)
T ss_dssp HHHHHHHHSTTEEEEEEEEE-TTSSCEEEEEEESSHHHHHHHHTSHHHHHHHTTSGGGBSSCCEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEEEe-CCCCEEEEEEEECCHHHHHHHhcChHHHHHHHHHHHHhcCCcEEEEEE
Confidence 34445555699998877655 44455555555 346666666654444333 22222222334555544
No 42
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=37.16 E-value=63 Score=21.98 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhH
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~-GG------------------~vialv~~~~~~~~~~~l~~~y~ 123 (151)
....+|.+.+.+.+ .|+.|..+ .|-|- +| -+..+|+++.++++++.+.+.-+
T Consensus 9 rp~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~ 82 (118)
T 3t9z_A 9 RPEKLECVKKALEE-RGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSAR 82 (118)
T ss_dssp CGGGHHHHHHHHHH-TTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-CCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhc
Confidence 34577888888887 78877644 45553 12 25666788899999999998644
No 43
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=36.23 E-value=91 Score=20.49 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHhCCCCceeee---ccCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhHh
Q 031874 71 GSEPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 124 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak~---tGaG~-GG------------------~vialv~~~~~~~~~~~l~~~y~~ 124 (151)
....++.+.+.+.+ .|+.|..+ .|-|- +| -+..+++++.++++++.+.+..+.
T Consensus 9 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 9 KPFKLDEVRESLAE-VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 34667888888887 78877644 44442 22 455666888899999999987654
No 44
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=34.31 E-value=18 Score=22.86 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCC
Q 031874 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 87 (151)
Q Consensus 39 ~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~G 87 (151)
..+.++|++..+..++.++..+...|..--++....+++|.+...+ .|
T Consensus 18 ~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~-~g 65 (73)
T 1z3e_B 18 VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE-LG 65 (73)
T ss_dssp HHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH-hC
Confidence 4567788888999999999999888876666677777888777776 55
No 45
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=33.84 E-value=67 Score=21.86 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHhCCCCceee---eccCCC--Cc-----------------eEEEEeccccHHHHHHHHHHHhH
Q 031874 71 GSEPLIQLNEILQRAPGVFGAR---FSGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Gak---~tGaG~--GG-----------------~vialv~~~~~~~~~~~l~~~y~ 123 (151)
....++.+.+.+.+ .|+.|.. +.|-|- |. -+..+|+++.++++++.+.+.-+
T Consensus 9 rp~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~ 82 (119)
T 3ncq_A 9 RAEKFPEVKAALEE-RGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAF 82 (119)
T ss_dssp CTTTHHHHHHHHHH-TTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 34567888888887 7887754 445553 21 25666788899999999998644
No 46
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=30.76 E-value=38 Score=23.54 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 031874 19 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISA 59 (151)
Q Consensus 19 ~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~ 59 (151)
.+++..+.|...++.-+..-...+..|....++.|+++|..
T Consensus 68 ~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li~~ 108 (126)
T 3h3m_A 68 PLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGR 108 (126)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444445555555566666666665
No 47
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=30.19 E-value=2.6e+02 Score=24.14 Aligned_cols=109 Identities=7% Similarity=0.041 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccC-CChHHHHHHHHHHhCCCCceeeeccCCC
Q 031874 21 EPTLAKRAEHYFTEN-RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-GSEPLIQLNEILQRAPGVFGARFSGAGF 98 (151)
Q Consensus 21 ~~~~~~r~~~~v~E~-~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~v-s~peld~l~~~a~~~~Ga~Gak~tGaG~ 98 (151)
++.+.+|..+.+... .+..+.+.-.+...+..+++.........++.++- ...-++.+.+.+. .|. .-+++++.
T Consensus 89 D~~l~~r~~~~l~~~i~~~~~e~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~dii~~fr~L~~--~G~--iEiit~~~ 164 (540)
T 3p0b_A 89 DARIKEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEE--GGQ--VELITSNA 164 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH--HTS--EEEEEECT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--CCC--EEEEcCCc
Confidence 466666766555443 33444444444444777777777666555554433 3444555555554 465 67777888
Q ss_pred CceEEEEe-ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEE
Q 031874 99 RGCCLALV-DADRAEEAASYVRSEYFELQPELASQLNADSAVL 140 (151)
Q Consensus 99 GG~vialv-~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 140 (151)
.=.++-|. +++.....++.-.+.|++. ||..|+.+
T Consensus 165 tH~~lPLl~~~e~~~~QI~~g~~~~~~~-------FG~~P~G~ 200 (540)
T 3p0b_A 165 THGYSPLLGYDEALWAQIKTGVSTYRRH-------FAKDPTGF 200 (540)
T ss_dssp TCBCGGGCSCHHHHHHHHHHHHHHHHHH-------HSSCCCBE
T ss_pred hhhHHhcCCCHHHHHHHHHHHHHHHHHH-------hCCCCCEE
Confidence 88888888 4565555555555677775 68877744
No 48
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=27.21 E-value=55 Score=17.48 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=6.1
Q ss_pred cHHHHHHHHHH
Q 031874 110 RAEEAASYVRS 120 (151)
Q Consensus 110 ~~~~~~~~l~~ 120 (151)
.++.+.+.+.+
T Consensus 22 aaeayakriae 32 (37)
T 2i9o_A 22 AAEAYAKRIAE 32 (37)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556655554
No 49
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=26.66 E-value=14 Score=23.80 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCC
Q 031874 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 87 (151)
Q Consensus 38 v~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~G 87 (151)
...+.++|++..+..++.++..+...|..--++.-..+++|.+...+ .|
T Consensus 24 S~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e-~G 72 (79)
T 3gfk_B 24 SVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE-LG 72 (79)
T ss_dssp BHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH-cC
Confidence 34677888899999999999988877775555666777788777776 56
No 50
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=26.51 E-value=69 Score=21.39 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCcee
Q 031874 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGA 91 (151)
Q Consensus 37 rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Ga 91 (151)
++.+.++.|.++|++.+-.+++ ..++. .+|.+.+. +.+...+..|.+-+
T Consensus 19 ~A~~~I~~l~~~dy~~i~~~~~---~~lk~--~Lt~e~l~-~~~~~~~~~G~f~s 67 (114)
T 4hyz_A 19 QAMEDIEIAQSKDYESWKSRFT---KDLQS--SLTEESYD-SYLKILEKQGEFKE 67 (114)
T ss_dssp HHHHHHHHHHTTCHHHHHTTBC---HHHHT--TCCHHHHH-HHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHhC---HHHHh--hCCHHHHH-HHHHHHHhcCCcee
Confidence 4567888999999999998888 46775 46788888 66665544777543
No 51
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=26.42 E-value=1.2e+02 Score=19.76 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=24.6
Q ss_pred CcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 031874 4 RLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRV 38 (151)
Q Consensus 4 ~L~~~~~~~l~~~~~~l~~~~~~r~~~~v~E~~rv 38 (151)
.|+.++.+||........+.++....++.++....
T Consensus 47 ~Lc~Lt~edF~~~~p~~GdiL~~hL~~Lk~~~~~~ 81 (93)
T 2qar_B 47 ALLLLTKEDFRYRSPHSGDVLYELLQHILKQRDLE 81 (93)
T ss_dssp HHTTCCHHHHHHHCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHhhhCCcchHHHHHHHHHHHHhcHHH
Confidence 47888999987655555577777777777666543
No 52
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=25.63 E-value=57 Score=21.95 Aligned_cols=69 Identities=9% Similarity=-0.093 Sum_probs=40.5
Q ss_pred HHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCc
Q 031874 79 NEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDC 147 (151)
Q Consensus 79 ~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~G 147 (151)
++.++..+||+.-.+.=.--.+..+.+++.. ..+.+..+++..+.+.+ ..+.+-..-.+.++.+.|-.|
T Consensus 45 ~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~ll~~~p~i~~~~~v~G 115 (122)
T 4dn9_A 45 VEGASSMPGCLSYVVAQDPKDPDAIWITEVWDSPESHKASLSLPSVQDAIACGRPLIAALDEHHETVPVGG 115 (122)
T ss_dssp HHHTTTCTTEEEEEEEEETTEEEEEEEEEEESCHHHHHHGGGSHHHHHHHHHHGGGEEEEEEEEEEEEEEE
T ss_pred HHHHhCCCCCEEEEEEecCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcCCCeeEEEEeccc
Confidence 3445556999888776443345666666654 46677777765555444 333333344566777665444
No 53
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=25.40 E-value=1.2e+02 Score=19.59 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=27.0
Q ss_pred hhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceEEEEeccc
Q 031874 63 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 109 (151)
Q Consensus 63 ~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~ 109 (151)
.|-+.|+||-+.+-..++...+ .|.+= +.. +|..|+.++-...+
T Consensus 48 eLa~~lgVSr~tVr~al~~L~~-~GlI~-~~~-gG~~G~~V~~~~~~ 91 (102)
T 2b0l_A 48 KIADRVGITRSVIVNALRKLES-AGVIE-SRS-LGMKGTYIKVLNNK 91 (102)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH-TTSEE-EEE-CSSSCEEEEECCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH-CCCEE-EEe-CCCCcEEEecCCHH
Confidence 3556689998888777777776 78643 333 22246776644433
No 54
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=24.91 E-value=1.5e+02 Score=19.29 Aligned_cols=73 Identities=10% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCCceeeeccC--------CCCceEEEEeccc-cHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCC
Q 031874 77 QLNEILQRAPGVFGARFSGA--------GFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGD 146 (151)
Q Consensus 77 ~l~~~a~~~~Ga~Gak~tGa--------G~GG~vialv~~~-~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~ 146 (151)
.+++..+..+|+++-.+.=. --.+..+.++... ..+.+..+++..+.+.+ ..+.+-.. .+.+.+.++-.
T Consensus 26 ~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h~~~~~~~~~~l~~-~~~i~~~~~~~ 104 (114)
T 1tuv_A 26 KIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVL-EMNIRILQPGI 104 (114)
T ss_dssp HHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHHHHHHHHHHTTTEE-EEEEEEECCC-
T ss_pred HHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHhcc-CCEEEEEEEcc
Confidence 44555566699988877544 2334556666554 46677776665544443 22222111 24566666777
Q ss_pred ceee
Q 031874 147 CARV 150 (151)
Q Consensus 147 Ga~~ 150 (151)
+.||
T Consensus 105 ~~~~ 108 (114)
T 1tuv_A 105 SGRV 108 (114)
T ss_dssp ----
T ss_pred cccc
Confidence 6665
No 55
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=24.89 E-value=66 Score=20.19 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=22.5
Q ss_pred hhhcccCCChHHHHHHHHHHhCCCCceeee--ccCC
Q 031874 64 SIYNYECGSEPLIQLNEILQRAPGVFGARF--SGAG 97 (151)
Q Consensus 64 l~~~~~vs~peld~l~~~a~~~~Ga~Gak~--tGaG 97 (151)
|-+.++||.+.+....+...+ .| +=-|+ .|++
T Consensus 22 La~~l~VS~~TIRrdL~~Le~-~G-~l~R~~~~Gga 55 (78)
T 1xn7_A 22 ISQTLNTPQPMINAMLQQLES-MG-KAVRIQEEPDG 55 (78)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH-HT-SEEEECCCCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHH-CC-CEEEecCcCCC
Confidence 445688999999888777776 67 44566 5554
No 56
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=23.75 E-value=50 Score=22.83 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeeeccCCCCceE
Q 031874 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCC 102 (151)
Q Consensus 39 ~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga~Gak~tGaG~GG~v 102 (151)
..+..+|..+||..-..-|..| ++. .+ +.-...++++..+. |.+-+.-..+|+||.+
T Consensus 57 stllk~lnagD~~~Aa~el~~S---~Wa-~Q-tp~Ra~r~~~~m~~--g~~~~y~~~~~~~~~~ 113 (124)
T 2o7a_A 57 TNSLRMLQQKRWDEAAVNLAKS---RWY-NQ-TPNRAKRVITTFRT--GTWDAYKNLSGGGGAM 113 (124)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTS---HHH-HH-SHHHHHHHHHHHHH--SSCTTTC--------C
T ss_pred hHHHHHHHCcCHHHHHHHHHhC---hhh-hh-CcHHHHHHHHHHHC--CCccccCCcCCCchHH
Confidence 4677888999999887777643 332 12 33355667776664 4333333334444543
No 57
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=22.15 E-value=1e+02 Score=21.14 Aligned_cols=42 Identities=7% Similarity=-0.070 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 031874 19 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 60 (151)
Q Consensus 19 ~l~~~~~~r~~~~v~E~~rv~~~~~al~~~d~~~lg~lm~~s 60 (151)
.+++....+...++..+..-...+..|....++.|+++|..+
T Consensus 58 ~ls~~~~~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~li~~~ 99 (123)
T 3nkz_A 58 CSSLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQS 99 (123)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555554444555555556666666666653
No 58
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.63 E-value=11 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=9.6
Q ss_pred cCCCCceEEEEec
Q 031874 95 GAGFRGCCLALVD 107 (151)
Q Consensus 95 GaG~GG~vialv~ 107 (151)
|+|+||-++-||.
T Consensus 30 ggggggelmklce 42 (62)
T 2i7u_A 30 GGGGGGELMKLCE 42 (62)
T ss_dssp SCSSSCHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 4677788888874
No 59
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=20.78 E-value=2e+02 Score=19.25 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHhCCCCcee---eeccCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhH
Q 031874 71 GSEPLIQLNEILQRAPGVFGA---RFSGAGF-RG------------------CCLALVDADRAEEAASYVRSEYF 123 (151)
Q Consensus 71 s~peld~l~~~a~~~~Ga~Ga---k~tGaG~-GG------------------~vialv~~~~~~~~~~~l~~~y~ 123 (151)
....++.+.+.+.+ .|+.|. .+.|-|- +| -+..+|+++.++++++.+.+.-+
T Consensus 9 rp~kl~~vk~AL~~-~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~ 82 (116)
T 4aff_A 9 RPFKLDEVKIALVN-AGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAAR 82 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 34567888888887 788775 4445553 23 24566788899999999987644
No 60
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=20.57 E-value=1.3e+02 Score=19.03 Aligned_cols=65 Identities=6% Similarity=-0.085 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHhCCCCceeeecc---CCCCceEEEEecc--------ccHHHHHHHHHHHhHhhchhHhhhcCCCce
Q 031874 70 CGSEPLIQLNEILQRAPGVFGARFSG---AGFRGCCLALVDA--------DRAEEAASYVRSEYFELQPELASQLNADSA 138 (151)
Q Consensus 70 vs~peld~l~~~a~~~~Ga~Gak~tG---aG~GG~vialv~~--------~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 138 (151)
+...+++.++ .+.+|+..+-..| .++|..+.+++.. ...+.+.+.+.+.+... +|+.+.
T Consensus 14 v~P~eIE~vl---~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~-------~gv~~~ 83 (109)
T 3lax_A 14 IFPIQIETIL---LQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDE-------ILVTPR 83 (109)
T ss_dssp ECHHHHHHHH---HTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHH-------HSSCCE
T ss_pred ECHHHHHHHH---HhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHH-------hCCccc
Confidence 4455666544 3446664443333 4455555554421 12345566666655543 477777
Q ss_pred EEEeec
Q 031874 139 VLICKP 144 (151)
Q Consensus 139 ~~~~~~ 144 (151)
+.++.+
T Consensus 84 v~~v~~ 89 (109)
T 3lax_A 84 VKLVPK 89 (109)
T ss_dssp EEEECT
T ss_pred eEEEcC
Confidence 666643
No 61
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=20.24 E-value=2e+02 Score=19.10 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCceeeeccCCCCceEEEEeccc-cHHHHHHHHHHHhHhhc-hhHh
Q 031874 77 QLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELA 130 (151)
Q Consensus 77 ~l~~~a~~~~Ga~Gak~tGaG~GG~vialv~~~-~~~~~~~~l~~~y~~~~-~~~~ 130 (151)
.+++..+..+||+.-.+.=.--....+.+++.. ..+.+..+++..+.+.+ +.+.
T Consensus 46 ~l~~~tr~EpGcl~y~l~~d~~dp~~f~~~E~w~d~~al~~H~~s~h~~~~~~~l~ 101 (118)
T 4hl9_A 46 ELVEKTRQEPLCLAYDLFVDQKDPGHFVFIEEWPDRAALDIHCATEHFTRLVPLIN 101 (118)
T ss_dssp HHHHHHHTSTTCCEEEEEEETTEEEEEEEEEEESSHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEeCCHHHHHHHHCCHHHHHHHHHHH
Confidence 455666667999888777655556777777664 47777788877666655 4443
No 62
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=20.11 E-value=33 Score=22.95 Aligned_cols=56 Identities=13% Similarity=0.283 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCC
Q 031874 32 FTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV 88 (151)
Q Consensus 32 v~E~~rv~~~~~al~~~d~~~lg~lm~~sh~~l~~~~~vs~peld~l~~~a~~~~Ga 88 (151)
|.+......+.++|++..+..+|.++..+...|..--++.-..+++|.+...+ .|.
T Consensus 26 Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~-~Gl 81 (98)
T 1coo_A 26 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS-RGL 81 (98)
T ss_dssp GGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHH-TTC
T ss_pred HHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHH-cCc
Confidence 45555556788899999999999999999888875555666777888887776 563
Done!