RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031874
(151 letters)
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 253 bits (648), Expect = 2e-84
Identities = 111/149 (74%), Positives = 126/149 (84%)
Query: 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL 62
P LCNVE EVYEAHK +LE LA+RAEHYF+EN RV KG+EAW SGN ++FGKLISASGL
Sbjct: 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGL 334
Query: 63 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 122
SSI NYECG EPLIQL EIL +APGV+GARFSGAGFRGCC+A VDA+ AEEAAS+VR EY
Sbjct: 335 SSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEY 394
Query: 123 FELQPELASQLNADSAVLICKPGDCARVI 151
+ QPELAS +N D VLIC+ GDCARV+
Sbjct: 395 EKAQPELASNINGDKPVLICEAGDCARVL 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 102 bits (257), Expect = 9e-27
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 8 VEEEVYEAHKNELE--PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSI 65
V +E + A + E+E P +A+RA H TEN+RV + +A +SG+ +FG+L++ S S
Sbjct: 251 VTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLR 310
Query: 66 YNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 125
+YE L L EI A G +GAR +GAGF GC +ALV D E A V EY ++
Sbjct: 311 DDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV 370
Query: 126 QPELASQLNADSAVLICKPGDCARVI 151
A A + + A V
Sbjct: 371 TGLKA-------AFYVVEASQGAGVC 389
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 90.3 bits (225), Expect = 3e-22
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 5 LCNVEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 63
L + EE ++ + ++ TL KRA H TEN+R K ++A K+G+ + FG+L++AS +S
Sbjct: 247 LGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVS 306
Query: 64 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123
+YE L L E + GV GAR +GAGF GC +A+V D+ E V Y
Sbjct: 307 LRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYE 366
Query: 124 E 124
E
Sbjct: 367 E 367
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 84.5 bits (209), Expect = 5e-20
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 7 NVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY 66
N Y A ++ P + +RA+H +EN RV K ++A K + + FG L++ S S
Sbjct: 249 NEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDD 308
Query: 67 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 126
+YEC + +L G G+R +GAGF GC + LV + ++ V +Y +
Sbjct: 309 DYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK- 367
Query: 127 PELASQLNADSAVLICKPG 145
+ L V++ KPG
Sbjct: 368 ----TGLELTFYVIVSKPG 382
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 78.5 bits (194), Expect = 5e-18
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 70
EV E ++L P L KRA + EN RV K +A K G+ + G+L++ S NYE
Sbjct: 218 EVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEV 277
Query: 71 GSEPLIQLNEILQRAP--GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 122
E +L+ ++ A G +GAR +GAGF G +ALVD + E + EY
Sbjct: 278 SCE---ELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 69.2 bits (170), Expect = 1e-14
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 64
L +V E + A EL+P +AKRA H TEN R + A +G+ + G+L++ S S
Sbjct: 242 LRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASM 301
Query: 65 IYNYECGSEPLIQLNEILQRAPGVF-GARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123
++E + L EI++ G G R +G GF GC +ALV + E V +Y
Sbjct: 302 RDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361
Query: 124 ELQPELASQLNADSAVLICKPGDCARVI 151
+ L V CK A
Sbjct: 362 A-----KTGLKETFYV--CKASQGAGQC 382
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 67.6 bits (165), Expect = 4e-14
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 21 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNE 80
+P A+RA H TEN+RV A + G+L++AS S ++E +E + + +
Sbjct: 240 DPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIAD 299
Query: 81 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 121
RA G GAR +G GF GC +ALV ADRAE+ A VR
Sbjct: 300 SAVRA-GALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 54.3 bits (131), Expect = 2e-09
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNS-----QDFGKLISASGLSSIYNYECGSEPLIQL 78
L +RA H ++E +RV + S S + G L++ S S YEC L +L
Sbjct: 361 LHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEEL 420
Query: 79 NEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123
++ R G GAR +GAG+ GC +ALV + ++ +++
Sbjct: 421 VKVC-RDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFY 464
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 38.2 bits (89), Expect = 1e-04
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 42 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEP--LIQLNEILQRAPGVFGARFSGAGFR 99
LEA + G+ + G+L++ + LS G L +L E L+ G GA+ SG+G
Sbjct: 2 LEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGG 60
Query: 100 GCCLALV-DADRAEEAASYVRSEY 122
AL D + AEE A +R Y
Sbjct: 61 PTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 34.6 bits (80), Expect = 0.011
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 84 RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 115
R G GA+ +GAG GC +AL ++ E A
Sbjct: 245 RTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 32.7 bits (75), Expect = 0.047
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 29 EHYFTENRRVAKGLE-AWKSGNSQDFGKLIS-ASGLSS---IYNYECGSEPLIQLNEILQ 83
+ + + E A ++G+ ++ G+L++ GL + E L +L E +
Sbjct: 203 DPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPE-----LDELVEAAR 257
Query: 84 RAPGVFGARFSGAGFRGCCLALV-DADRAEE 113
G GA+ +GAG GC +AL + + AE
Sbjct: 258 SL-GALGAKLTGAGGGGCIIALAKNEEIAET 287
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.1 bits (73), Expect = 0.086
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 72 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 122
+ L ++E++ GV G R G GF GC + L+ + + ++VR ++
Sbjct: 384 TPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 28.9 bits (65), Expect = 0.88
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 56 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 100
L++ L S SE +Q LQRA + AGFR
Sbjct: 26 LLAFRFLDSAQRSNQASEARLQREAELQRAMALLERDLRRAGFRR 70
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 29.3 bits (66), Expect = 0.91
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 90 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 138
++ SGAG+ G L D R + + + + Q A+ LN+D++
Sbjct: 44 ASQQSGAGYIGTGTTLADVRR-------IYNSFLDTQLRTATSLNSDAS 85
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 27.9 bits (62), Expect = 2.0
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 38 VAKGLEAWKSGNSQDFGKLISAS-GLSSIYNYECGSEPLIQLNEILQ--RAPGVFGARFS 94
V++ EA + GN G+L++A+ L C +L+ I+Q R G GA+ S
Sbjct: 227 VSEAKEALQKGNLFRVGELMNANHDLCQKLTVSCR-----ELDSIVQTCRTYGALGAKMS 281
Query: 95 GAGFRGCCLALVDADRAEEAA 115
G G G +AL A + A
Sbjct: 282 GTGRGGLVVALA-ASEDQRDA 301
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 27.6 bits (62), Expect = 2.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 16 HKNELEPTLAKRAEHYF 32
HKNE+ P + A+ Y
Sbjct: 232 HKNEIAPAVFAAADLYV 248
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 26.4 bits (59), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 98 FRGCCLALVDAD---RAEEAASYVRSEYFELQ 126
F G +A V AD A +AA V+ EY EL
Sbjct: 80 FVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 27.0 bits (60), Expect = 3.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 56 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 95
L+ A + Y Y+C ++ E L APGV+ AR++G
Sbjct: 50 LLKAEYVYKKYGYDCFADDTGLEVEALNGAPGVYSARYAG 89
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 26.7 bits (60), Expect = 4.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 80 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 115
L+ PG AR SG+G C AL + A EAA
Sbjct: 238 AALRAQPGALLARMSGSG--ATCFALFADEAAAEAA 271
>gnl|CDD|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 312
Score = 26.0 bits (58), Expect = 8.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 77 QLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVR 119
+L E+L PG G SG+G C AL ++AE+A VR
Sbjct: 247 KLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVR 288
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,559,711
Number of extensions: 659826
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 33
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)