RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031874
(151 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 146 bits (370), Expect = 2e-43
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL 62
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S
Sbjct: 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHR 319
Query: 63 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 122
S +YE L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 320 SLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY 379
Query: 123 FELQPELASQLNADSAVLICKPGDCARVI 151
+ + + D A+V+
Sbjct: 380 -----------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 144 bits (365), Expect = 2e-42
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG 61
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS
Sbjct: 274 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASH 333
Query: 62 LSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 121
S +YE L L E Q+ GV GAR +GAGF GC +ALV D V
Sbjct: 334 ASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQV 393
Query: 122 YFELQPELASQLNADSAVLICKPGDCARVI 151
Y E + ++ + + G + +
Sbjct: 394 YEE-------VVGYPASFYVAQIGSGSTKL 416
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 137 bits (346), Expect = 3e-40
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+EV E ++L P K + EN RV + +A K GN ++ GK+++ + NYE
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277
Query: 70 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 129
+ L E G +GAR +GAGF G +ALVD + AE + EY + P
Sbjct: 278 VSCKELDFFVERA-LKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWK 336
Query: 130 ASQLNADSAVLICKPGDCARV 150
A I +P D +
Sbjct: 337 AR-------HFIVEPSDGVGI 350
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 99.2 bits (247), Expect = 2e-25
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRV---AKGLEAWKSGNSQDFGKLISASGLSSI 65
+ + ++ L L +RA+H ++E RV K E Q G+L++ S +S
Sbjct: 333 TQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCR 392
Query: 66 YNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 125
YEC L QL +I R G G+R +GAG+ GC +++V AD+ + V Y++
Sbjct: 393 DMYECSCPELDQLVDIC-RKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 451
Query: 126 QPELASQLNADSAVLICKPGDCARVI 151
+ ++ KPG A V+
Sbjct: 452 SDGSLAPEKQ--SLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 86.7 bits (214), Expect = 6e-21
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 14 EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNS-------QDFGKLISASGLSSIY 66
L +RA+H ++E+ RV K L+ S DFG+L++ S S
Sbjct: 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 431
Query: 67 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA---DRAEEAASYVRSEYF 123
YEC Q+ I A G FG+R +GAG+ GC + LV + E+ + +++
Sbjct: 432 LYECSCIETNQICSIA-LANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFY 490
Query: 124 ELQPELASQLNADSAVLICKPGDCARVI 151
++ + A+++ KP +
Sbjct: 491 NVRYPDLTDEELKDAIIVSKPALGTCLY 518
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 76.5 bits (189), Expect = 1e-17
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYNYECGSEPLIQLNEILQ 83
+ + F E +V EA K N +DFGKL++ + L + L ++ +I
Sbjct: 216 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLKK---LNISTPKLDRIVDIGN 270
Query: 84 RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 124
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 271 --RFGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 309
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 61.5 bits (149), Expect = 3e-12
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 2/120 (1%)
Query: 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSIYN 67
+ K E + A G+ +F +++
Sbjct: 210 SAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMA 269
Query: 68 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 127
+ + + ++ G + SGAG G + +V+ R EE + + + P
Sbjct: 270 GAITNPMIQEAFDVA-TGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNGFVMP 328
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 61.2 bits (149), Expect = 4e-12
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 96
+ A +++ G+++S + + S L E + G GA+ SG
Sbjct: 199 LTQQAEIAISQKDAEGLGQILSQAH-LHLKEIGVSSLEADSLVETA-LSHGALGAKMSGG 256
Query: 97 GFRGCCLALV-DADRAEEAASYVRSEYFE 124
G GC +ALV + A+E A + +
Sbjct: 257 GLGGCIIALVTNLTHAQELAERLEEKGAV 285
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 59.8 bits (145), Expect = 1e-11
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+ V + HK + + + Y V++ EA + G+ Q G+L++A+ +
Sbjct: 203 KVVNDVHKMKQQ-QPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANH-DLCRQID 260
Query: 70 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQPE 128
L + + R G GA+ SG G G +AL + D+ + ++++ E
Sbjct: 261 VSCRELESIVQTC-RTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE---- 315
Query: 129 LASQLNADSAVLICKPGDCARV 150
+P + +
Sbjct: 316 -----AKFIWRYTVQPSAASNL 332
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 59.4 bits (144), Expect = 2e-11
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+ V++ HK +P +H + V + + + + + + + +
Sbjct: 189 QAVHDVHKLCEDPQYMSHVKH---IGKLVLRASDVIEHHKFEALADIFNECH-ADLKALT 244
Query: 70 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVRSEYFE 124
+ + QL +I + G + +GAG G L L D A+ V
Sbjct: 245 VSHDKIEQLMKIG-KENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAA 299
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 43.3 bits (101), Expect = 9e-06
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 13 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS 72
+ P L R + + A +L+ + + G
Sbjct: 254 LIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNALGVGH 312
Query: 73 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 122
L QL ++ ++ +GAG GC + L+ +
Sbjct: 313 ASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 360
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 42.3 bits (99), Expect = 2e-05
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 26 KRAEHYFTE-NRRVAKGLEAWKSGNSQDFGKLISA-----SGLSSIYNYECGSEPLIQLN 79
K +H+ T N + + ++A+ + + + I L + + L +L
Sbjct: 242 KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELA 301
Query: 80 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEA 114
+ + G + SG+G C +A E
Sbjct: 302 DSAENMGG--AGKSSGSGGGDCGIAFSKTKELAEK 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 1e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 47/155 (30%)
Query: 8 VEE--EVYEAHKNELEP-------TLAKRAEHYFTENRRVAKGL--EAWKSGNS----QD 52
EE ++Y+ + + TL++ + +GL W S +D
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 53 FGKLISA------SGLSSIYNYE--CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 104
+ L+S G+ + +Y ++L PG + GA G
Sbjct: 230 Y--LLSIPISCPLIGVIQLAHYVVTA---------KLLGFTPGELRSYLKGA--TGHSQG 276
Query: 105 LVDADRAEEAASYVRSEYFELQPELASQLNADSAV 139
LV A A + +F + A+
Sbjct: 277 LVTA--VAIAETDSWESFFV---------SVRKAI 300
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 37.3 bits (86), Expect = 0.001
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 38 VAKGLEAWKSGNSQDFGKLIS-ASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 96
V +EA + G S+ + + AS L + + + L QL E Q V A+ SGA
Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV--AKSSGA 295
Query: 97 GFRGCCLALVDADRAEEA 114
G C +AL ++ +
Sbjct: 296 GGGDCGIALSFDAQSTKT 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.39
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 51 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 83
Q KL +S+ Y S P + + ++
Sbjct: 20 QALKKL-----QASLKLYADDSAPALAIKATME 47
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 26.1 bits (58), Expect = 5.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 13 YEAHKNELEPTLAKRAEHYFTENR 36
H EL+ +RA E R
Sbjct: 215 SLPHTRELDDEALRRARAVVVEWR 238
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 26.0 bits (58), Expect = 5.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 91 ARFSGAGFRGCCLALVDADRAEEAAS 116
+ G G A+ D D + A
Sbjct: 181 MATNRHGLAGSFAAVRDTDLRAQLAR 206
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 25.9 bits (57), Expect = 8.0
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 89 FGARFSGAGFRGCCLALVDADRA-EEAASYVRSEYFELQPE 128
F S G + R + AA +R Y+++ E
Sbjct: 572 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 612
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 25.6 bits (55), Expect = 8.7
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 86 PGVFGARFSGAG---FRGCCLALVDADRAEEAASYVRS-EYFEL 125
P + +FS G +G AL+ E R Y EL
Sbjct: 560 PDIDINKFSYVGNSSLKGARKALLSRKACAEVKEIARKMTYLEL 603
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog;
structural genomics, joint center for structural
genomics, JCSG; 1.78A {Thermotoga maritima} SCOP:
c.51.4.1
Length = 208
Score = 25.2 bits (56), Expect = 8.9
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 80 EILQRAPGVFGARFSG 95
L PGV ARF
Sbjct: 86 YSLGGFPGVMSARFME 101
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 25.3 bits (56), Expect = 9.0
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 21 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSI 65
E + KR + Y+ +K+ +++ I G SI
Sbjct: 167 EGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSI 211
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase,
cobalamin, colicin, TRAN protein; HET: MPG; 1.95A
{Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A*
1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 3rgm_A* 3rgn_A*
2gsk_A* 1nqf_A*
Length = 594
Score = 25.5 bits (56), Expect = 9.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 78 LNEILQRAPGVFGARFSGAG 97
+N++L+R PGV + G+G
Sbjct: 42 VNDVLRRLPGVDITQNGGSG 61
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 25.4 bits (56), Expect = 9.6
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 106 VDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP 144
+A R Y + LA+ + AV +
Sbjct: 39 PTRAKALPICESWRIPYADSLSSLAASCD---AVFVHSS 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,272,649
Number of extensions: 123374
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 37
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)