RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031874
(151 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 102 bits (255), Expect = 6e-29
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 5 LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 63
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS S
Sbjct: 43 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHAS 102
Query: 64 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 123
+YE L L E Q+ GV GAR +GAGF GC +ALV D V Y
Sbjct: 103 LKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYE 162
Query: 124 ELQPELASQLNADSAVLICKPGDCARVI 151
E + ++ + + G + +
Sbjct: 163 E-------VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 97.8 bits (243), Expect = 3e-27
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 64
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S S
Sbjct: 39 LREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSL 98
Query: 65 IYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 124
+YE L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 99 RDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-- 156
Query: 125 LQPELASQLNADSAVLICKPGDCARVI 151
+ + + D A+V+
Sbjct: 157 ---------GGTATFYLSQAADGAKVL 174
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 88.2 bits (218), Expect = 1e-23
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 70
EV E +L P K + EN RV + +A K G+ + GK+++ + NY
Sbjct: 41 EVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRV 100
Query: 71 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELA 130
E L + G +GAR +GAGF G +ALVD D+A+ + EY
Sbjct: 101 SCEELDFFVKKA-MELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA------ 153
Query: 131 SQLNADSAVLICKPGDCA 148
+ + + + KP D
Sbjct: 154 -KFSWKAKYFVVKPSDGV 170
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 58.8 bits (142), Expect = 2e-12
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRA 85
+ + F E +V EA K N +DFGKL++ + + + L ++ +I R
Sbjct: 36 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNRF 92
Query: 86 PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 124
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 93 --GFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 129
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 46.5 bits (110), Expect = 1e-07
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISASGLSSIYNYE 69
+ P L + E RV + A +L+ + +
Sbjct: 27 SRLIKFPEIMAPLL-TSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNALG 84
Query: 70 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 122
G L QL ++ ++ +GAG GC + L+ +
Sbjct: 85 VGHASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 28.4 bits (61), Expect = 0.39
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 78 LNEILQRAPGVFGARFSGAGFRG 100
+ E+L R PGV +G G
Sbjct: 40 MREVLNRIPGVSAPENNGTGSHD 62
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia
coli [TaxId: 562]}
Length = 714
Score = 28.1 bits (60), Expect = 0.53
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 78 LNEILQRAPGVFGARFSGAGFRG 100
+++I++ PGV S +G RG
Sbjct: 35 VSKIIRTMPGVNLTGNSTSGQRG 57
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 27.6 bits (60), Expect = 0.65
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 89 FGARFSGAGFRGCCLALVDADRAEEAASY-VRSEYFELQPE 128
F S G + R ++A++ +R Y+++ E
Sbjct: 264 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 27.2 bits (58), Expect = 1.00
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 78 LNEILQRAPGVFGARFSGAG------FRG 100
+N++L+R PGV + G+G RG
Sbjct: 39 VNDVLRRLPGVDITQNGGSGQLSSIFIRG 67
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 23.3 bits (50), Expect = 9.8
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 95 GAGFRGCCLALVDADRAEEAASYVRSEYFELQ 126
G +A+++ AE + + EL+
Sbjct: 88 GIEVAAASVAIIEPGDAETLVREIVEKVKELR 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,432
Number of extensions: 21547
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 15
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)