BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031875
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 30.8 bits (68), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD+++ LD + L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQQILDDIKALAAEQ 78
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
Length = 133
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 51 SALAFLQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFE 109
+ALA + +L Y+ +++L+ QQ + ++A I ++E ++ +Q K +G E L
Sbjct: 1 AALAEIVAQLNIYQ-SQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVP--- 55
Query: 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYS 139
V G F +A ++DT V + +GA V ++ +
Sbjct: 56 VGAGSFIKAELKDTSEVIMSVGAGVAIKKN 85
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 53 LAFLQERLQQYKLV-----EMKLLAQQRDLQAKI-PDIEKCLDIVATLQAKKEGGEALTA 106
++ LQE Q K V E L + D +I D + + VA L + G ++
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE--GTVWSS 203
Query: 107 DFEVSEGIFSRARIEDTDSVCLW 129
DF+ +EG+F D +V +W
Sbjct: 204 DFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 242 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 289
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 252 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 299
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 258 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 305
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 258 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 305
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 91 VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
V TL+ +EG D+ + S+ R+E +++C+ LG+
Sbjct: 89 VNTLKFSREGISGFNTDYIGFGKMLSKFRVEIKNNICVVLGS 130
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +
Sbjct: 11 FPAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFI 65
Query: 89 DIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
D TL+A + E G +SR R
Sbjct: 66 DRFPTLEALADADEDEVLKAWEGLGYYSRVR 96
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 30 PAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +D
Sbjct: 1 PAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFID 55
Query: 90 IVATLQAKKEGGEALTADFEVSEGIFSRAR 119
TL+A + E G +SR R
Sbjct: 56 RFPTLEALADADEDEVLKAWEGLGYYSRVR 85
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +
Sbjct: 11 FPAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFI 65
Query: 89 DIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
D TL+A + E G +SR R
Sbjct: 66 DRFPTLEALADADEDEVLKAWEGLGYYSRVR 96
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +
Sbjct: 11 FPAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFI 65
Query: 89 DIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
D TL+A + E G +SR R
Sbjct: 66 DRFPTLEALADADEDEVLKAWEGLGYYSRVR 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,187,104
Number of Sequences: 62578
Number of extensions: 104403
Number of successful extensions: 280
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 29
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)