BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031875
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510
PE=2 SV=1
Length = 195
Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/119 (84%), Positives = 111/119 (93%)
Query: 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
TERRGIPAA+F++DV+T+LSQ LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14 TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73
Query: 84 IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
IEKCL++VATL+AKK GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+E
Sbjct: 74 IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEE 132
>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2
Length = 196
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 15 IATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQ 73
+ TAA + GIP A FVEDV +F+ Q + ++ L L E+ Q+YK +E+ L +
Sbjct: 10 LETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQK 69
Query: 74 QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
+R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A + TD VCLWLGAN
Sbjct: 70 KRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGAN 129
Query: 134 VMLEYSCDE 142
VMLEY DE
Sbjct: 130 VMLEYDIDE 138
>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1
Length = 197
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 9/143 (6%)
Query: 4 ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
A+ + + E+AT RR GIP A FVEDV +F+ Q + ++ L L E+
Sbjct: 2 AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56
Query: 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
Q+YK +E+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A
Sbjct: 57 YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116
Query: 120 IEDTDSVCLWLGANVMLEYSCDE 142
+ TD VCLWLGANVMLEY DE
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDE 139
>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3
Length = 197
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 9/143 (6%)
Query: 4 ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
A+ + + E+AT RR GIP A FVEDV +F+ Q + ++ L L E+
Sbjct: 2 AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56
Query: 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
Q+YK +E+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A
Sbjct: 57 YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116
Query: 120 IEDTDSVCLWLGANVMLEYSCDE 142
+ TD +CLWLGANVMLEY DE
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDE 139
>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1
Length = 197
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 18 AAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRD 76
AA + GIP A FVEDV +F+ Q + + L L E+ Q+YK +E+ L ++R
Sbjct: 14 AAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRR 73
Query: 77 LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVML 136
L+ +IP+I++ L+I+ Q KKE +L F +++ ++ +A + TD VCLWLGANVML
Sbjct: 74 LKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVML 133
Query: 137 EYSCDE 142
EY DE
Sbjct: 134 EYDIDE 139
>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3
PE=3 SV=1
Length = 185
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 74/115 (64%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
RGIP ++ +EDV+++L++ L + A L+E+ +YK VE +LAQ+ + KIP+ E
Sbjct: 11 RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70
Query: 87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCD 141
L I+ TL AK+ E+ F +S+ ++++A ++ + V +WLGANVM+EY +
Sbjct: 71 SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLE 125
>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3
PE=3 SV=1
Length = 195
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
IP F+ +V+ F+ D DV + LQE Q+YK E KL L + +++
Sbjct: 23 NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80
Query: 88 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
LDIV ++ K E+ + +E+SEG++S A++ + S+ LWLGANVMLEYS +E
Sbjct: 81 LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEE 133
>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719
PE=3 SV=2
Length = 185
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 4/116 (3%)
Query: 28 GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
GIP A F+E++ TF+SQ + + L L E+ +Y+ + L A++R L+++IPD+E+
Sbjct: 13 GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72
Query: 87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
L++V L+ + E E F +S+ +F + + T +V LWLGA+VMLEY DE
Sbjct: 73 SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDE 125
>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1
Length = 169
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
RGIP AQF E +L ++ L QE + +YK +E ++ + L KIPDI
Sbjct: 7 RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61
Query: 86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
K L V L K+ G++ T +E+++ + ++A +E D+V LWLGANVMLEY+ +E
Sbjct: 62 KTLQSVQFL--KERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEE 116
>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAC10 PE=1 SV=1
Length = 199
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
RGIP A F+E+V + D QERL +YK ++ LA + L+ +IPD+E
Sbjct: 13 RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71
Query: 87 CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
L I +L+ + G E + +++++ ++++A+++ + V LWLGA+VMLE
Sbjct: 72 TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131
Query: 138 YSCDE 142
Y DE
Sbjct: 132 YPIDE 136
>sp|Q0W5H4|PFDA_UNCMA Prefoldin subunit alpha OS=Uncultured methanogenic archaeon RC-I
GN=pfdA PE=3 SV=1
Length = 138
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 59 RLQQYKLVEMKLLAQQRDL-QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117
++Q Y+ M+ L QQ +L QA I D++ L + +L+ EG E L + G F
Sbjct: 16 KMQAYQ-GRMEALQQQANLIQASINDVDSALKAITSLEGAGEGHELLVP---IGAGSFVH 71
Query: 118 ARIEDTDSVCLWLGANVMLEYSCDEVYLFF 147
A I D V + LGA++ +E + + F
Sbjct: 72 ATIAKPDKVLVGLGADISVERTVADARKIF 101
>sp|P03539|VP3_BTV17 Core protein VP3 OS=Bluetongue virus 17 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q65750|VP3_BTV13 Core protein VP3 OS=Bluetongue virus 13 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q65749|VP3_BTV11 Core protein VP3 OS=Bluetongue virus 11 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|P12435|VP3_BTV10 Core protein VP3 OS=Bluetongue virus 10 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|A1RXA9|PFDA_THEPD Prefoldin subunit alpha OS=Thermofilum pendens (strain Hrk 5)
GN=pfdA PE=3 SV=1
Length = 129
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 67 EMKLLAQ-----QRDLQAK---IPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRA 118
E +LAQ QR++Q I +++ + + + + ++G E L VS G++ RA
Sbjct: 11 EYSVLAQVAEELQREIQLAQTLIAEVDSAILALKNISSLEDGKEILVP---VSAGVYVRA 67
Query: 119 RIEDTDSVCLWLGANVMLEYSCDEVYLFF 147
I+ + + +G+N+++E S DE F
Sbjct: 68 SIKRQEKFLVAIGSNILVEKSLDEAVEFL 96
>sp|A4FW54|PFDA_METM5 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pfdA PE=3 SV=1
Length = 144
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC 151
G F A++++ + + L +G +V+LE DEV + F S
Sbjct: 59 GAFVNAQVQNPEKIVLSVGVDVLLEKDVDEVIVDFQKSV 97
>sp|A1T1A5|Y104_MYCVP Putative S-adenosyl-L-methionine-dependent methyltransferase
Mvan_0104 OS=Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1) GN=Mvan_0104 PE=3 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 9 ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68
A SS +A+ PT +RR +P +D T L+ D + A+L E L Y +
Sbjct: 140 AYKSSTLASHGVQPTADRREVP-IDLRQDWPTALTHAGFDADQPTAWLAEGLLMYLPADA 198
Query: 69 --KLLAQQRDLQAKIPDI-EKCLDIVA--TLQAKKEGGEALTADFEVSEGIFSRARIEDT 123
+L AQ +L A + + + I A + +E ++TA F+V + ED
Sbjct: 199 QDRLFAQITELSAPGSRVAAESMGIHAQDRRERMRERFASITAQFDVEPMDITELTYEDP 258
Query: 124 D--SVCLWLGAN 133
D V WL A+
Sbjct: 259 DRADVAQWLTAH 270
>sp|P20608|VP3_BTV1A Core protein VP3 OS=Bluetongue virus 1 (isolate Australia) GN=S3
PE=3 SV=1
Length = 901
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKALAAEQ 78
>sp|A6UQB4|PFDA_METVS Prefoldin subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=pfdA PE=3 SV=1
Length = 146
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 91 VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTS 150
+ ++++ K GE + + G F +A +++ + + L +G +V+LE +EV L F S
Sbjct: 40 IESMESLKTSGEIM---LPLGAGSFVKADVKNPEKIILSVGVDVLLEKDVEEVILDFKNS 96
Query: 151 C 151
Sbjct: 97 L 97
>sp|A6VH56|PFDA_METM7 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pfdA PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC 151
G F +A ++ + + L +G +V+LE DEV + F S
Sbjct: 59 GAFVKAEAQNPEKIILSVGVDVLLEKDVDEVIVDFQKSV 97
>sp|Q18EV0|PFDA_HALWD Prefoldin subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790)
GN=pfdA PE=3 SV=1
Length = 154
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 76 DLQAKIPDIEKCLDIVATLQAKKE-----GGEALTADFEVSEGIFSRARIEDTDSVCLWL 130
DLQ++ I++ +D + TL++ GG+A + RA I+D D + + L
Sbjct: 33 DLQSEQTSIDEAMDAIQTLESGATVQVPLGGDA-----------YVRAEIQDADEIIVGL 81
Query: 131 GANVMLEYSCD 141
GA+ E S D
Sbjct: 82 GADFAAEQSAD 92
>sp|A9A9J3|PFDA_METM6 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pfdA PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC 151
G F +A ++ + + L +G +V+LE DEV + F S
Sbjct: 59 GAFIKAEAQNPEKIILSVGVDVLLEKDVDEVIVDFQKSV 97
>sp|A8A8L9|PFDA_IGNH4 Prefoldin subunit alpha OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=pfdA PE=3 SV=1
Length = 160
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 81 IPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140
I D+ L+++ L + +G L + G F +A+IEDT++V +G + LE
Sbjct: 59 IDDLYASLEVLDYLTKEGKGKVVLVP---IGAGNFIKAKIEDTNTVITSVGGRLSLEVPS 115
Query: 141 DE 142
DE
Sbjct: 116 DE 117
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEA 103
+++L Q R+ +A P ++KC D + L+ +K GG +
Sbjct: 1578 LEILGQSRNPEAVQPHLKKCFDNIKLLKIQKVGGSS 1613
>sp|Q5JE63|PFDA2_PYRKO Prefoldin subunit alpha 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA2 PE=3 SV=1
Length = 142
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 92 ATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
ATL KE G+ + G+ R +IE+ D V + +GA +++ + DE
Sbjct: 46 ATLAYLKEKGKGKEIYIPLGSGVAIRGKIENPDDVIMDVGAGILVGATVDE 96
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG 101
+++L Q R+ +A P ++KC D + L+ +K GG
Sbjct: 1543 LEILGQSRNPEAVQPHLKKCFDNIKLLRIQKVGG 1576
>sp|Q6LX82|PFDA_METMP Prefoldin subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=pfdA PE=3 SV=1
Length = 144
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC 151
G F +A ++ + + L +G +V+LE + D+V + F S
Sbjct: 59 GAFIKAEAQNPEKIVLSVGVDVLLEKNVDDVIVDFQKSV 97
>sp|Q6FE96|RSMC_ACIAD Ribosomal RNA small subunit methyltransferase C OS=Acinetobacter
sp. (strain ADP1) GN=rsmC PE=3 SV=1
Length = 338
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 81 IPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138
I D K LD++ + +G + D+ SEG+ A+ S LW+ AN L Y
Sbjct: 256 IQDAPKALDVIVSNPPFHQG---IHTDYSASEGLCKTAKQHLNTSGELWIVANRFLNY 310
>sp|Q65748|VP3_BTV2A Core protein VP3 OS=Bluetongue virus 2 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + L ++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKALTVEQ 78
>sp|P33474|VP3_EHDVA Core protein VP3 OS=Epizootic hemorrhagic disease virus 2 (strain
Australia) GN=S3 PE=3 SV=1
Length = 899
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97
LQE +Q+ + + + +A +D+ IPD++K +D V L ++
Sbjct: 34 LQEIMQKVRQAKSEYMAATKDVDLTIPDVQKIIDGVKELASE 75
>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdA PE=3 SV=1
Length = 138
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 69 KLLAQQRDLQAKIPD-----------IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117
L AQ R+LQ IE C + TL+ K A+ + G
Sbjct: 11 NLAAQHRELQQNAESVNQQLGMVQMSIEDCTRAILTLEELKSASGAINTMIPLGAGALIH 70
Query: 118 ARIEDTDSVCLWLGANVMLEYSCDE 142
A I D D + + +GA + +E + E
Sbjct: 71 ANIADVDKIVVSVGAGISVEKTPTE 95
>sp|A6UWR8|PFDA_META3 Prefoldin subunit alpha OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=pfdA PE=3 SV=1
Length = 144
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
LQE L++ +L++M+LL ++ + D E DI+ L GG G F
Sbjct: 22 LQEELEKIELMKMELLKSIDSMEG-LKDSE---DILIPL-----GG-----------GAF 61
Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC 151
+A+ DT V + GA+V LE +V + F S
Sbjct: 62 IKAKAMDTKKVIMGAGADVFLEKDISDVVVDFNKSI 97
>sp|P27281|VP3_EHDV1 Core protein VP3 OS=Epizootic hemorrhagic disease virus 1 GN=S3
PE=3 SV=1
Length = 899
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97
LQE +Q+ + + + +A +D+ +PD++K +D V L ++
Sbjct: 34 LQEIMQKVRQAQSEYVAATKDVDLTVPDVQKIIDGVKELASE 75
>sp|Q60547|SYCP3_MESAU Synaptonemal complex protein 3 OS=Mesocricetus auratus GN=SYCP3
PE=2 SV=1
Length = 234
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 10 SSSSEIATAAASPTTERRGIP-AAQFVEDV----QTFLSQLDLDVNSALAFLQERLQQY- 63
S S E +P ++ G + VEDV Q L + D+N AL ++R++ Y
Sbjct: 35 SGSEEDVADEKTPVIDKHGKKRSGGLVEDVGGEVQNMLEKFGADINKALLAKRKRIEMYT 94
Query: 64 --------KLVEMKLLAQQRDLQAKIPDI-EKCLDIVAT----LQAKKEGGEALTADFEV 110
+ +E QQ ++Q + ++ + ++ +Q +E GE LT F
Sbjct: 95 KASFKASNQKIEQIWKTQQEEIQKLNSEYSQQFMSVLQQWELDMQKFEEQGEKLTNLFRQ 154
Query: 111 SEGIFSRARI 120
+ IF ++RI
Sbjct: 155 QQKIFQQSRI 164
>sp|P70281|SYCP3_MOUSE Synaptonemal complex protein 3 OS=Mus musculus GN=Sycp3 PE=1 SV=1
Length = 254
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 10 SSSSEIATAAASPTTERRGIP-AAQFVEDV----QTFLSQLDLDVNSALAFLQERLQQY- 63
S S E +P ++ G +A +EDV Q L + D+N AL ++R++ Y
Sbjct: 55 SGSEEDVADEKAPVIDKHGKKRSAGIIEDVGGEVQNMLEKFGADINKALLAKRKRIEMYT 114
Query: 64 --------KLVEMKLLAQQRDLQAKIPDI-EKCLDIVAT----LQAKKEGGEALTADFEV 110
+ +E QQ ++Q + ++ ++++ +Q +E GE L+ F
Sbjct: 115 KASFKASNQKIEQIWKTQQEEIQKLNNEYSQQFMNVLQQWELDIQKFEEQGEKLSNLFRQ 174
Query: 111 SEGIFSRARI 120
+ IF ++RI
Sbjct: 175 QQKIFQQSRI 184
>sp|Q9VS48|SLX4_DROME Structure-specific endonuclease subunit SLX4 OS=Drosophila
melanogaster GN=mus312 PE=1 SV=2
Length = 1145
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 20 ASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSA 52
ASP T++R IP Q ED+ FL D N +
Sbjct: 731 ASPVTKKRAIPQFQTEEDLDAFLMDFSTDGNGS 763
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80
PE=1 SV=2
Length = 1638
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 36 EDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
ED LSQLD + N+ LA + Y EMKLLAQ+ A D++K
Sbjct: 442 EDQLRILSQLDEETNARLAAQDD----YDAGEMKLLAQENAEAAMQRDLDK 488
>sp|A2BDR7|CI117_DANRE Uncharacterized protein C9orf117 homolog OS=Danio rerio
GN=si:ch211-233f10.4 PE=2 SV=1
Length = 471
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEK-CLDIVATLQ---AKKE 99
L+ERL++Y+L +L Q++DL +KI ++EK DIV L+ AKKE
Sbjct: 46 LEERLERYQLKCDELEVQEKDLSSKINNVEKEKKDIVLFLKRTLAKKE 93
>sp|Q5U249|ELYS_XENLA Protein ELYS OS=Xenopus laevis GN=ahctf1 PE=1 SV=1
Length = 2408
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 5 SAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYK 64
S++ A SS++I PTT +RG+ A+ E+V T + + + L R+ +
Sbjct: 1732 SSKPADSSTDIIGNITLPTTPKRGLKKAK--ENVDTLKNSISVVPEEELTLGTRRIT--R 1787
Query: 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTAD 107
+ L LQ K P + L + + + G+ +T+D
Sbjct: 1788 KATLTALDNPEPLQIKEPPSGEDLQVQPSTPTRGRRGKVITSD 1830
>sp|B7ZNG0|KIF7_MOUSE Kinesin-like protein KIF7 OS=Mus musculus GN=Kif7 PE=1 SV=1
Length = 1348
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 4 ASAETASSSSEIATA---AASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERL 60
+SA S E A A AA T+ R+G Q + +Q+ +++L+ + LA L++ +
Sbjct: 455 SSASGPDSGIESAPAEDQAAQGTSGRKGDEGTQQLLTLQSQVARLEEENRDFLAALEDAM 514
Query: 61 QQYKLVEMKLLAQQRDL 77
+QYKL +L QQ ++
Sbjct: 515 EQYKLQSDRLREQQEEM 531
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,895,074
Number of Sequences: 539616
Number of extensions: 1606637
Number of successful extensions: 6425
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 6369
Number of HSP's gapped (non-prelim): 83
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)