Query 031875
Match_columns 151
No_of_seqs 110 out of 215
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3313 Molecular chaperone Pr 100.0 9.1E-52 2E-56 328.5 11.5 130 22-151 8-137 (187)
2 PRK03947 prefoldin subunit alp 99.9 3.2E-22 7E-27 151.8 10.4 100 49-151 4-103 (140)
3 TIGR00293 prefoldin, archaeal 99.8 3.7E-21 8E-26 143.3 8.9 94 54-151 2-95 (126)
4 cd00584 Prefoldin_alpha Prefol 99.8 1.9E-18 4.1E-23 129.2 9.5 94 54-150 2-95 (129)
5 cd00890 Prefoldin Prefoldin is 99.6 1.2E-15 2.5E-20 112.6 9.5 94 54-150 2-95 (129)
6 PF02996 Prefoldin: Prefoldin 99.6 8.3E-16 1.8E-20 112.7 5.6 82 66-150 4-85 (120)
7 COG1730 GIM5 Predicted prefold 99.5 6.5E-13 1.4E-17 103.5 10.2 99 50-151 5-103 (145)
8 PRK14011 prefoldin subunit alp 99.3 2.6E-11 5.6E-16 94.3 10.2 93 52-150 4-96 (144)
9 PRK01203 prefoldin subunit alp 99.2 1.1E-10 2.4E-15 89.6 8.9 92 55-150 4-95 (130)
10 KOG3048 Molecular chaperone Pr 97.9 7.8E-05 1.7E-09 58.6 8.0 71 74-150 39-109 (153)
11 KOG3047 Predicted transcriptio 96.9 0.0032 6.9E-08 49.2 6.5 48 102-149 65-112 (157)
12 cd00632 Prefoldin_beta Prefold 95.7 0.0058 1.3E-07 44.4 1.8 70 54-150 2-71 (105)
13 TIGR02338 gimC_beta prefoldin, 93.3 0.11 2.4E-06 38.1 3.5 72 52-150 4-75 (110)
14 PF01920 Prefoldin_2: Prefoldi 92.0 0.9 2E-05 31.9 6.8 67 53-150 4-70 (106)
15 KOG4098 Molecular chaperone Pr 83.5 1.4 2.9E-05 34.5 3.2 71 54-151 18-88 (140)
16 PF09177 Syntaxin-6_N: Syntaxi 77.6 9.2 0.0002 27.2 5.8 46 48-93 9-67 (97)
17 PF06825 HSBP1: Heat shock fac 77.4 5.7 0.00012 26.3 4.2 37 55-91 11-47 (54)
18 PF02093 Gag_p30: Gag P30 core 76.8 0.45 9.7E-06 39.6 -1.4 85 28-117 119-208 (211)
19 KOG4117 Heat shock factor bind 71.0 13 0.00029 25.8 4.9 36 55-90 24-59 (73)
20 PRK03947 prefoldin subunit alp 57.7 39 0.00085 25.2 5.8 71 59-145 7-77 (140)
21 PF00626 Gelsolin: Gelsolin re 53.7 6.2 0.00014 25.7 0.8 18 120-137 23-40 (76)
22 PRK09343 prefoldin subunit bet 50.3 23 0.0005 26.4 3.5 75 49-150 5-79 (121)
23 PF08336 P4Ha_N: Prolyl 4-Hydr 49.5 77 0.0017 23.6 6.2 58 37-95 51-116 (134)
24 TIGR00293 prefoldin, archaeal 45.4 67 0.0014 23.4 5.3 68 62-146 3-70 (126)
25 PF08418 Pol_alpha_B_N: DNA po 38.8 19 0.00042 29.4 1.6 34 56-89 202-235 (253)
26 smart00262 GEL Gelsolin homolo 38.5 22 0.00048 24.1 1.7 15 121-135 32-46 (90)
27 PF02520 DUF148: Domain of unk 37.3 1.1E+02 0.0024 21.9 5.4 60 27-91 14-73 (113)
28 PF07889 DUF1664: Protein of u 37.2 1.1E+02 0.0023 23.5 5.3 50 41-90 35-86 (126)
29 PF15219 TEX12: Testis-express 36.6 82 0.0018 23.4 4.4 36 53-88 63-98 (100)
30 PF04508 Pox_A_type_inc: Viral 36.5 26 0.00057 19.5 1.4 19 74-92 3-21 (23)
31 TIGR02894 DNA_bind_RsfA transc 36.4 83 0.0018 25.3 4.8 63 28-91 75-137 (161)
32 COG1382 GimC Prefoldin, chaper 36.3 83 0.0018 24.0 4.6 41 54-94 9-49 (119)
33 PF02996 Prefoldin: Prefoldin 34.2 1.7E+02 0.0037 20.7 5.9 44 48-91 74-117 (120)
34 PF12983 DUF3867: Protein of u 33.4 1.8E+02 0.004 23.8 6.4 57 29-85 37-93 (186)
35 COG3189 Uncharacterized conser 32.1 76 0.0016 24.3 3.7 42 24-68 26-67 (117)
36 KOG4514 Uncharacterized conser 30.8 1E+02 0.0022 25.6 4.6 47 10-56 99-148 (222)
37 PF08150 FerB: FerB (NUC096) d 30.0 22 0.00047 25.2 0.5 14 119-132 62-75 (76)
38 PF11690 DUF3287: Protein of u 29.6 2E+02 0.0043 21.7 5.6 31 47-77 38-68 (109)
39 PF09789 DUF2353: Uncharacteri 29.0 89 0.0019 27.6 4.2 34 52-85 17-50 (319)
40 PRK14127 cell division protein 28.8 1.5E+02 0.0032 22.2 4.8 7 36-42 26-32 (109)
41 PF01920 Prefoldin_2: Prefoldi 28.4 1.7E+02 0.0036 20.1 4.9 42 48-89 59-100 (106)
42 PF05103 DivIVA: DivIVA protei 27.5 24 0.00053 25.6 0.4 37 49-85 23-59 (131)
43 PF15272 BBP1_C: Spindle pole 26.8 1.6E+02 0.0035 24.3 5.1 36 52-88 63-98 (196)
44 PRK00409 recombination and DNA 26.1 2E+02 0.0044 28.0 6.4 43 27-70 497-539 (782)
45 PF10438 Cyc-maltodext_C: Cycl 25.8 69 0.0015 22.4 2.5 26 106-131 3-28 (78)
46 TIGR01843 type_I_hlyD type I s 25.6 4.1E+02 0.009 22.5 8.7 35 104-138 300-334 (423)
47 PF11221 Med21: Subunit 21 of 25.5 2.4E+02 0.0052 21.4 5.7 53 27-79 60-129 (144)
48 KOG4796 RNA polymerase II elon 24.9 1.5E+02 0.0033 28.3 5.1 65 32-97 508-582 (604)
49 KOG3785 Uncharacterized conser 24.8 2.3E+02 0.005 26.3 6.1 69 22-98 19-87 (557)
50 TIGR02338 gimC_beta prefoldin, 24.2 2.7E+02 0.0058 20.0 5.5 42 48-89 64-105 (110)
51 PF11079 YqhG: Bacterial prote 23.9 32 0.00069 29.6 0.5 21 126-146 118-138 (260)
52 PF08874 DUF1835: Domain of un 23.3 45 0.00097 24.1 1.2 15 120-134 83-97 (124)
53 PF09304 Cortex-I_coil: Cortex 22.7 2.3E+02 0.005 21.3 4.8 36 55-90 41-76 (107)
54 PF07303 Occludin_ELL: Occludi 22.2 2.2E+02 0.0048 20.7 4.7 64 32-97 15-88 (101)
55 KOG3130 Uncharacterized conser 21.9 1E+02 0.0022 28.6 3.3 64 83-150 28-91 (514)
56 KOG1636 DNA polymerase delta p 21.6 48 0.0011 28.4 1.2 28 114-142 214-243 (260)
57 PF09006 Surfac_D-trimer: Lung 21.5 1.4E+02 0.0031 19.2 3.0 20 48-67 10-29 (46)
58 COG2178 Predicted RNA-binding 21.5 1.8E+02 0.0039 24.3 4.4 71 26-97 105-180 (204)
59 PF08232 Striatin: Striatin fa 21.2 3.7E+02 0.0081 20.3 6.3 37 49-85 2-38 (134)
60 KOG0608 Warts/lats-like serine 20.9 4.8E+02 0.01 26.3 7.7 66 49-121 573-648 (1034)
61 PF04012 PspA_IM30: PspA/IM30 20.9 3.1E+02 0.0068 21.7 5.7 48 48-95 95-142 (221)
62 PF14911 MMS22L_C: S-phase gen 20.4 1.3E+02 0.0028 27.1 3.6 63 24-95 291-353 (373)
63 PF07097 DUF1359: Protein of u 20.3 2.5E+02 0.0054 20.7 4.5 52 68-119 12-67 (102)
64 COG1842 PspA Phage shock prote 20.1 3.3E+02 0.0073 22.6 5.9 51 47-97 95-145 (225)
No 1
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-52 Score=328.51 Aligned_cols=130 Identities=48% Similarity=0.783 Sum_probs=123.0
Q ss_pred CCCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCC
Q 031875 22 PTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG 101 (151)
Q Consensus 22 ~~~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~ 101 (151)
..+++||||+|+|||||++|+++|+......++.+||+|+||||||.+|.+++++|+.|||||+++|++|+.|+++++.+
T Consensus 8 ~~k~~rGIPeA~fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~ 87 (187)
T KOG3313|consen 8 LSKNARGIPEAKFIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEG 87 (187)
T ss_pred hhhccCCCChhHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccC
Confidence 36899999999999999999999983333349999999999999999999999999999999999999999999999888
Q ss_pred CceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhcccCC
Q 031875 102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC 151 (151)
Q Consensus 102 e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~kn~ 151 (151)
++++++|+|+||||+||.|||+++|||||||||||||++|||++||++|+
T Consensus 88 ~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl 137 (187)
T KOG3313|consen 88 ESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNL 137 (187)
T ss_pred cceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999874
No 2
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.88 E-value=3.2e-22 Score=151.84 Aligned_cols=100 Identities=25% Similarity=0.312 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEE
Q 031875 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (151)
Q Consensus 49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~L 128 (151)
.+.-++.++++|++|+.+...|.+++..|...+|+++.++++|+.|.++. ++.+++|+|++++|++|+|+++++|++
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~---~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKG---EGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 46678999999999999999999999999999999999999999997653 568999999999999999999999999
Q ss_pred ecccceeeeecHHHHhhhcccCC
Q 031875 129 WLGANVMLEYSCDEVYLFFPTSC 151 (151)
Q Consensus 129 WLGAnVMlEY~ldEA~elL~kn~ 151 (151)
|||+||||||+++||+++|++|+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~ 103 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRK 103 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHH
Confidence 99999999999999999998763
No 3
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.85 E-value=3.7e-21 Score=143.33 Aligned_cols=94 Identities=26% Similarity=0.352 Sum_probs=88.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (151)
Q Consensus 54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn 133 (151)
+.+..+|++|+.....|.+++..|...+++++.++++|+.|..+ +..++.+||++++|++|+|+++++|++|||+|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g 77 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG 77 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence 57889999999999999999999999999999999999999644 46899999999999999999999999999999
Q ss_pred eeeeecHHHHhhhcccCC
Q 031875 134 VMLEYSCDEVYLFFPTSC 151 (151)
Q Consensus 134 VMlEY~ldEA~elL~kn~ 151 (151)
||||++++||+++|++|+
T Consensus 78 ~~vE~~~~eA~~~l~~~~ 95 (126)
T TIGR00293 78 YYVEKDAEEAIEFLKKRI 95 (126)
T ss_pred EEEEecHHHHHHHHHHHH
Confidence 999999999999998763
No 4
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.77 E-value=1.9e-18 Score=129.17 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=89.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (151)
Q Consensus 54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn 133 (151)
+.++.++++|+..-..++++...|...+++...++++|+.|... +.+.++.+||+.++|++|+|+++++|++|||+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g 78 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence 57889999999999999999999999999999999999999764 357999999999999999999999999999999
Q ss_pred eeeeecHHHHhhhcccC
Q 031875 134 VMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 134 VMlEY~ldEA~elL~kn 150 (151)
|++|++++||+++|++|
T Consensus 79 ~~vE~~~~eA~~~l~~r 95 (129)
T cd00584 79 YYVEKDLEEAIEFLDKK 95 (129)
T ss_pred EEEEecHHHHHHHHHHH
Confidence 99999999999999876
No 5
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.64 E-value=1.2e-15 Score=112.63 Aligned_cols=94 Identities=28% Similarity=0.364 Sum_probs=87.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (151)
Q Consensus 54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn 133 (151)
+.+...+++|+..-..+.+++..+...+++++.+++.|+.|.... ++.+...+++.++|.+|+|+++++|++|+|+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~---~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~ 78 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAE---EEKELLVPLGAGLFVKAEVKDDDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence 567889999999999999999999999999999999999997554 56777889999999999999999999999999
Q ss_pred eeeeecHHHHhhhcccC
Q 031875 134 VMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 134 VMlEY~ldEA~elL~kn 150 (151)
++||++++||+++|.++
T Consensus 79 ~~ve~~~~eA~~~l~~r 95 (129)
T cd00890 79 VYVEKSLEEAIEFLKKR 95 (129)
T ss_pred EEEEecHHHHHHHHHHH
Confidence 99999999999999875
No 6
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.61 E-value=8.3e-16 Score=112.75 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhh
Q 031875 66 VEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYL 145 (151)
Q Consensus 66 mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~e 145 (151)
.-.++++++..|...+.++..+++.|+.|.. .+.+.++.+||+.++|++|+|+++++|++|||+|+++|++++||++
T Consensus 4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~ 80 (120)
T PF02996_consen 4 ELENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE 80 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Confidence 3467889999999999999999999999976 2368999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 031875 146 FFPTS 150 (151)
Q Consensus 146 lL~kn 150 (151)
+|++|
T Consensus 81 ~l~~r 85 (120)
T PF02996_consen 81 FLKKR 85 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 7
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.5e-13 Score=103.54 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEe
Q 031875 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW 129 (151)
Q Consensus 50 e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LW 129 (151)
..-++.+.+.|+-|+..-+.|+++...|...+-+++.++++|+.|+... +.-++.+|++.++|++|+|...|+|.+-
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~---~g~E~LVpvGag~fv~~kv~~~~kviV~ 81 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG---EGKEVLVPVGAGLFVKAKVKDMDKVIVS 81 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEEEEcCCCceEEEEeccCceEEEE
Confidence 3457788999999999999999999999999999999999999998764 2459999999999999999999999999
Q ss_pred cccceeeeecHHHHhhhcccCC
Q 031875 130 LGANVMLEYSCDEVYLFFPTSC 151 (151)
Q Consensus 130 LGAnVMlEY~ldEA~elL~kn~ 151 (151)
||+||-+|-+++||+++|++|+
T Consensus 82 iGsg~~ae~~~~eAie~l~k~~ 103 (145)
T COG1730 82 IGSGYYAEKSADEAIEFLKKRI 103 (145)
T ss_pred cCCceeeeecHHHHHHHHHHHH
Confidence 9999999999999999999874
No 8
>PRK14011 prefoldin subunit alpha; Provisional
Probab=99.29 E-value=2.6e-11 Score=94.34 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecc
Q 031875 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (151)
Q Consensus 52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLG 131 (151)
-++++...++.|+..-..|.++...|..-+-++..++++++.+. .+-++.+||+.++|++|+|.++|+|.+-+|
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG 77 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGVG 77 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence 46677778899999999999999999999999999999998653 458999999999999999999999999999
Q ss_pred cceeeeecHHHHhhhcccC
Q 031875 132 ANVMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 132 AnVMlEY~ldEA~elL~kn 150 (151)
+|+.||.+++||+++|+++
T Consensus 78 tGy~VEk~~~eA~~~~~~r 96 (144)
T PRK14011 78 SDIYLEKDVSEVIEDFKKS 96 (144)
T ss_pred CCeEEEecHHHHHHHHHHH
Confidence 9999999999999999865
No 9
>PRK01203 prefoldin subunit alpha; Provisional
Probab=99.19 E-value=1.1e-10 Score=89.62 Aligned_cols=92 Identities=10% Similarity=0.187 Sum_probs=81.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccce
Q 031875 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV 134 (151)
Q Consensus 55 ~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnV 134 (151)
.+.+.|+-|+..-+.|.++...|+.-+-++..+++.++.+. .+++-++.+||+.++|++|+|.++++|.+-+|+|+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~----~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy 79 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNE----LDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV 79 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----cCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence 45567777888888899999999999999999888888853 22458999999999999999999999999999999
Q ss_pred eeeecHHHHhhhcccC
Q 031875 135 MLEYSCDEVYLFFPTS 150 (151)
Q Consensus 135 MlEY~ldEA~elL~kn 150 (151)
.||.+.++++++|++|
T Consensus 80 ~VEK~~e~kie~L~~~ 95 (130)
T PRK01203 80 YIAEERERTIERLKEN 95 (130)
T ss_pred EEEecHHHHHHHHHHH
Confidence 9999999999999876
No 10
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.8e-05 Score=58.58 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=57.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhcccC
Q 031875 74 QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 74 ~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~kn 150 (151)
+.+.+.|..++..+|. .++.. .+.-+..+||+..+|+.+++...+++.+-+|-|..||.+.++|+++..++
T Consensus 39 L~~aq~k~~~~~~aln---~~~~~---~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkRK 109 (153)
T KOG3048|consen 39 LKGAQTKYEESIAALN---DVQAA---NEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKRK 109 (153)
T ss_pred HHHHHHHHHHHHHHHh---hcccC---CCCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHHH
Confidence 4455555555544444 45433 47789999999999999999999999999999999999999999987654
No 11
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=96.93 E-value=0.0032 Score=49.18 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=44.7
Q ss_pred CceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhccc
Q 031875 102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPT 149 (151)
Q Consensus 102 e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~k 149 (151)
.+++....|+.++|..-.||.+++|++-||-++.||..+.||+++..+
T Consensus 65 kel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DR 112 (157)
T KOG3047|consen 65 KELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDR 112 (157)
T ss_pred hhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999987643
No 12
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=95.74 E-value=0.0058 Score=44.43 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (151)
Q Consensus 54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn 133 (151)
..+...|++|+---..+.+++..|...+-+.+.+++-+..|. +..+||.-+|.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~--------------------------~d~~vy~~VG~- 54 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA--------------------------DDAEVYKLVGN- 54 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchHHHHhhh-
Confidence 356778888888888999999999999999999999888772 33445555553
Q ss_pred eeeeecHHHHhhhcccC
Q 031875 134 VMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 134 VMlEY~ldEA~elL~kn 150 (151)
|+|+.+.+||...|+++
T Consensus 55 vfv~~~~~ea~~~Le~~ 71 (105)
T cd00632 55 VLVKQEKEEARTELKER 71 (105)
T ss_pred HHhhccHHHHHHHHHHH
Confidence 99999999999998764
No 13
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=93.30 E-value=0.11 Score=38.11 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecc
Q 031875 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (151)
Q Consensus 52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLG 131 (151)
-+..+...|++|+.--..+.+++..|...+-+.+.+++.+..|. +..+||--+|
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~VG 57 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSVG 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhc
Confidence 35667777888888888899999999999999999999887762 3345666666
Q ss_pred cceeeeecHHHHhhhcccC
Q 031875 132 ANVMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 132 AnVMlEY~ldEA~elL~kn 150 (151)
. |+|+-+.+||+.-|++|
T Consensus 58 ~-vlv~~~~~e~~~~l~~r 75 (110)
T TIGR02338 58 N-LLVKTDKEEAIQELKEK 75 (110)
T ss_pred h-hhheecHHHHHHHHHHH
Confidence 5 99999999999888765
No 14
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=92.01 E-value=0.9 Score=31.89 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=43.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEeccc
Q 031875 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (151)
Q Consensus 53 l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGA 132 (151)
+..|+...++|. .+.+++..|...+-+++.+++.|..| ++..+||.-+|
T Consensus 4 ~~~~~~l~~~l~----~~~~q~~~l~~~~~~~~~~~~eL~~l--------------------------~~~~~~y~~vG- 52 (106)
T PF01920_consen 4 QNKFQELNQQLQ----QLEQQIQQLERQLRELELTLEELEKL--------------------------DDDRKVYKSVG- 52 (106)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTS--------------------------STT-EEEEEET-
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------CCcchhHHHHh-
Confidence 344444444444 44555566777777777777777665 23446666665
Q ss_pred ceeeeecHHHHhhhcccC
Q 031875 133 NVMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 133 nVMlEY~ldEA~elL~kn 150 (151)
+++|+.+.+++.+.|+++
T Consensus 53 ~~fv~~~~~~~~~~L~~~ 70 (106)
T PF01920_consen 53 KMFVKQDKEEAIEELEER 70 (106)
T ss_dssp TEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 688999999999888753
No 15
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=1.4 Score=34.53 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=54.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (151)
Q Consensus 54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn 133 (151)
+.++..|..|+-.-+++.++...|..-.-+.+-.+++++-|. |+-++|= +=.+
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d--------------------------p~RKCfR-mIgG 70 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD--------------------------PTRKCFR-MIGG 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------------hhhHHHH-Hhcc
Confidence 478889999999999999999999998888888888776652 3333333 3358
Q ss_pred eeeeecHHHHhhhcccCC
Q 031875 134 VMLEYSCDEVYLFFPTSC 151 (151)
Q Consensus 134 VMlEY~ldEA~elL~kn~ 151 (151)
|.|||++.|-.=.|..|+
T Consensus 71 vLVErTVkeVlP~L~~nk 88 (140)
T KOG4098|consen 71 VLVERTVKEVLPILQTNK 88 (140)
T ss_pred chhhhhHHHHhHHHHhhH
Confidence 999999998887776653
No 16
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=77.63 E-value=9.2 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHhccccHHHHHHHHHH
Q 031875 48 DVNSALAFLQERLQQYKLV-------------EMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (151)
Q Consensus 48 ~~e~~l~~l~e~~~KYk~m-------------E~~l~~~~~~L~~kIPdikktLe~V~~ 93 (151)
+++..+..++..|++|..+ ...|...+..+...|-|+++|+.+|+.
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888899999999999886 567888888899999999999998764
No 17
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=77.43 E-value=5.7 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=30.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 031875 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (151)
Q Consensus 55 ~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V 91 (151)
.|+.+-.||+-|-.++..|...+-.+|.++++++.-+
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566667999999999999999999999999998643
No 18
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=76.84 E-value=0.45 Score=39.58 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HhccccHHHHHHHHHHHHhhhcCCC
Q 031875 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDL-----QAKIPDIEKCLDIVATLQAKKEGGE 102 (151)
Q Consensus 28 gIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L-----~~kIPdikktLe~V~~L~~k~~~~e 102 (151)
+.|+..=+..|.+....++.++-.-|++|.|.|++|--+.-.-..++..+ ...-|||++-|+-++-+...
T Consensus 119 aa~Kp~NlsKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp~dP~~~~~~~~v~~~Fi~QsapDIrkKLq~~eg~~~~----- 193 (211)
T PF02093_consen 119 AARKPTNLSKVREVTQGPNESPSAFLERLREAYRKYTPFDPESPEGQASVAMSFITQSAPDIRKKLQKLEGLQGK----- 193 (211)
T ss_dssp HHHH-----S--TTTTTGGGHHHHHHHHHHHHHHHTS-------------------------------------------
T ss_pred cCCCCccHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHhccHHHHHHHHhhcCcccC-----
Confidence 35666667777777777666788889999999999987765444444333 44569999999999888544
Q ss_pred ceeEEEEccccceee
Q 031875 103 ALTADFEVSEGIFSR 117 (151)
Q Consensus 103 ~~et~f~L~d~lyak 117 (151)
++.-...+++.||.+
T Consensus 194 ~l~~Ll~~A~kVf~~ 208 (211)
T PF02093_consen 194 TLSELLKEAEKVFNN 208 (211)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHhc
Confidence 577778888888864
No 19
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=70.97 E-value=13 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 031875 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (151)
Q Consensus 55 ~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~ 90 (151)
.||....||+-|-.++..|...+..+|.|++|++.=
T Consensus 24 lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaD 59 (73)
T KOG4117|consen 24 LLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIAD 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 556667899999999999999999999999999763
No 20
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.68 E-value=39 Score=25.20 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=48.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeee
Q 031875 59 RLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138 (151)
Q Consensus 59 ~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY 138 (151)
.++.+...-..+.++...|..++-.+...+.-+.....- ++ +.++. .....|++-||+++++.-
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~------l~---------~l~~~-~~~~e~lvplg~~~yv~~ 70 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET------LE---------ELKSK-GEGKETLVPIGAGSFVKA 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hhccc-CCCCeEEEEcCCCcEEEE
Confidence 345555555667788889999999998888876666533 22 11211 145799999999999988
Q ss_pred cHHHHhh
Q 031875 139 SCDEVYL 145 (151)
Q Consensus 139 ~ldEA~e 145 (151)
.+.+..+
T Consensus 71 ~v~~~~k 77 (140)
T PRK03947 71 KVKDKDK 77 (140)
T ss_pred EecCCCe
Confidence 7765433
No 21
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=53.74 E-value=6.2 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=13.5
Q ss_pred eCCCCeEEEecccceeee
Q 031875 120 IEDTDSVCLWLGANVMLE 137 (151)
Q Consensus 120 I~~~d~V~LWLGAnVMlE 137 (151)
++...+|++|+|.+....
T Consensus 23 ld~~~~i~vW~G~~~~~~ 40 (76)
T PF00626_consen 23 LDCGYEIFVWVGKKSSPE 40 (76)
T ss_dssp EEESSEEEEEEHTTSHHH
T ss_pred EEeCCCcEEEEeccCCHH
Confidence 455669999999985544
No 22
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.29 E-value=23 Score=26.43 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEE
Q 031875 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (151)
Q Consensus 49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~L 128 (151)
..+-+...-..|++++---..+.+++..|...+-+++.+++-++.|. +..+||=
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~--------------------------~d~~VYk 58 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP--------------------------DDTPIYK 58 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHH
Confidence 33445555555666666666777888899999999999988877762 2335555
Q ss_pred ecccceeeeecHHHHhhhcccC
Q 031875 129 WLGANVMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 129 WLGAnVMlEY~ldEA~elL~kn 150 (151)
-+| .|+|-=+.+||+.-|+++
T Consensus 59 ~VG-~vlv~qd~~e~~~~l~~r 79 (121)
T PRK09343 59 IVG-NLLVKVDKTKVEKELKER 79 (121)
T ss_pred Hhh-HHHhhccHHHHHHHHHHH
Confidence 555 466666888887766554
No 23
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=49.47 E-value=77 Score=23.56 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=33.3
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHHhH-HHHHHH----HHHHHHHHHhcccc---HHHHHHHHHHHH
Q 031875 37 DVQTFLSQLDLDVNSALAFLQERLQQY-KLVEMK----LLAQQRDLQAKIPD---IEKCLDIVATLQ 95 (151)
Q Consensus 37 dV~~~~~~~~~~~e~~l~~l~e~~~KY-k~mE~~----l~~~~~~L~~kIPd---ikktLe~V~~L~ 95 (151)
|.++|+..| -++=..+++|..-+.+. ++|+.. ..+....+..++|. +..+...+-.|+
T Consensus 51 d~e~yl~nP-lnaF~LIrRl~~dW~~~~~~~~~~~~~~~~~~~~~~~~~~Pt~~Dl~gA~~~l~RLQ 116 (134)
T PF08336_consen 51 DPEEYLSNP-LNAFSLIRRLHQDWPKWEKLMEQPVGQEQLQNLQELRSKLPTEEDLEGAAEGLLRLQ 116 (134)
T ss_pred chhhhhhcH-HHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 667788665 34444666666655443 344444 44456666778985 445555555544
No 24
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=45.42 E-value=67 Score=23.38 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHH
Q 031875 62 QYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCD 141 (151)
Q Consensus 62 KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ld 141 (151)
.+...-..+.++...|..++..+...+.-++....- +.. + +.. ....+.+-||+++++.=.++
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~------L~~-------l--~~~--~~~~~lv~lg~~~~v~~~v~ 65 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIET------LED-------L--KGA--EGKETLVPVGAGSFVKAKVK 65 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh-------c--ccc--CCCeEEEEcCCCeEEEEEeC
Confidence 344555677788888999999999888887777533 211 1 111 34689999999999988777
Q ss_pred HHhhh
Q 031875 142 EVYLF 146 (151)
Q Consensus 142 EA~el 146 (151)
+...+
T Consensus 66 ~~~~v 70 (126)
T TIGR00293 66 DTDKV 70 (126)
T ss_pred CCCEE
Confidence 65543
No 25
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=38.78 E-value=19 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHH
Q 031875 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (151)
Q Consensus 56 l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe 89 (151)
....--+||+|-+.|..+-.-|..+|-++-+.+.
T Consensus 202 ~d~~k~~yr~M~~kL~e~sevLDdrId~f~~~iq 235 (253)
T PF08418_consen 202 FDPKKYKYRYMFQKLSERSEVLDDRIDEFAELIQ 235 (253)
T ss_dssp ----------S---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444569999999999999999999999887663
No 26
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=38.53 E-value=22 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.607 Sum_probs=12.3
Q ss_pred CCCCeEEEeccccee
Q 031875 121 EDTDSVCLWLGANVM 135 (151)
Q Consensus 121 ~~~d~V~LWLGAnVM 135 (151)
+..+.||+|+|.+..
T Consensus 32 d~~~~iyvW~G~~as 46 (90)
T smart00262 32 DTGSEIYVWVGKKSS 46 (90)
T ss_pred ECCCEEEEEECCCCC
Confidence 446799999998875
No 27
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=37.33 E-value=1.1e+02 Score=21.93 Aligned_cols=60 Identities=7% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 031875 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (151)
Q Consensus 27 rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V 91 (151)
++++.+..-..|.+|..+. ++...+..|.... +-....+.++......++|+....|..|
T Consensus 14 ~~lt~~e~~~~l~~Wa~~~--~v~~~~~~f~~~~---~~~~~~~~~~~~~vi~~L~~a~~~l~~I 73 (113)
T PF02520_consen 14 PNLTKAEIEEQLDEWAEKY--GVQDQYNEFKAQV---QAQKEEVRKNVTAVISNLSSAFAKLSAI 73 (113)
T ss_pred CCCCHHHHHHHHHHHHHHC--CcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999876 3555555444433 4444556666667777777555555443
No 28
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.17 E-value=1.1e+02 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=33.0
Q ss_pred HhccCC--cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 031875 41 FLSQLD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (151)
Q Consensus 41 ~~~~~~--~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~ 90 (151)
|+.+++ +-+..+-++|+..+..-.-.-..|.+|+.+|..|+.+....-+.
T Consensus 35 ~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~ 86 (126)
T PF07889_consen 35 FVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQ 86 (126)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555554 34445556777777777777777888888888777766554443
No 29
>PF15219 TEX12: Testis-expressed 12
Probab=36.59 E-value=82 Score=23.35 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHH
Q 031875 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (151)
Q Consensus 53 l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktL 88 (151)
+..++..++.=+-+|..|.|++..|.+++.=|-++|
T Consensus 63 i~eiD~lfkEA~~lEnfLkqkre~LrQrlt~isntL 98 (100)
T PF15219_consen 63 ITEIDGLFKEANALENFLKQKRECLRQRLTVISNTL 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777777888888888888888877776665
No 30
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.49 E-value=26 Score=19.49 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=14.9
Q ss_pred HHHHHhccccHHHHHHHHH
Q 031875 74 QRDLQAKIPDIEKCLDIVA 92 (151)
Q Consensus 74 ~~~L~~kIPdikktLe~V~ 92 (151)
..+++.+|-|+++-|+.+.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4678888999998887664
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.40 E-value=83 Score=25.26 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 031875 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (151)
Q Consensus 28 gIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V 91 (151)
..|...=++||=.|+..-. +.....+.++...++.+.--..|+++...|...+..+++.+.++
T Consensus 75 ~~~~~ltl~~vI~fLq~l~-~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 75 REAGSLTLQDVISFLQNLK-TTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred cCcccCCHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888886542 11111222222223333333334444444555444444444433
No 32
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.30 E-value=83 Score=23.99 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 031875 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATL 94 (151)
Q Consensus 54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L 94 (151)
.+.-..|++++---+.+..++..+...+-+++++|+=++.|
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444455555556677788889999999999999988887
No 33
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=34.19 E-value=1.7e+02 Score=20.73 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 031875 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (151)
Q Consensus 48 ~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V 91 (151)
+.+++++.++.+...++-.-..+.+++..++.++-.+...++-+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999888888888888888888888877654
No 34
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=33.35 E-value=1.8e+02 Score=23.81 Aligned_cols=57 Identities=9% Similarity=0.304 Sum_probs=46.1
Q ss_pred CCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHH
Q 031875 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (151)
Q Consensus 29 IP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdik 85 (151)
.--+.|..+|-+||.....+.+..+.-...+..+|.|=...+..|..++-.-++.+.
T Consensus 37 lsm~dFsk~I~~YmeeNNISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid~~~~~ 93 (186)
T PF12983_consen 37 LSMADFSKKIMEYMEENNISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGIDMSSLN 93 (186)
T ss_pred ccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccccc
Confidence 445789999999998776788888888888899999999999999988855444433
No 35
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=76 Score=24.26 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHH
Q 031875 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68 (151)
Q Consensus 24 ~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~ 68 (151)
.-||||++..+ .++-|++.- ....+.-+.|.-.-++|-.+-.
T Consensus 26 lWPRGi~Ke~~--~~D~W~Kdi-APS~eLRkwf~Hdp~~w~~F~~ 67 (117)
T COG3189 26 LWPRGIKKEDL--ALDLWLKDI-APSTELRKWFHHDPKKWDEFRE 67 (117)
T ss_pred cCCCCCChhhh--hHHHHHhhc-CCCHHHHHHHcCCHHHHHHHHH
Confidence 45999999998 778888763 2334444444444444443333
No 36
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=1e+02 Score=25.64 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=22.7
Q ss_pred cchhhhhhhcC-CCCCCCCCCCccc--ccccHHHHhccCCcCHHHHHHHH
Q 031875 10 SSSSEIATAAA-SPTTERRGIPAAQ--FVEDVQTFLSQLDLDVNSALAFL 56 (151)
Q Consensus 10 ~~~~~~~~~~~-~~~~~~rgIP~A~--FiedV~~~~~~~~~~~e~~l~~l 56 (151)
+.++.-++++. ..+...|+||+.. ...|++..-+.-.+.++..|+.+
T Consensus 99 ~p~sa~a~plps~~p~~s~~ip~vDp~VL~DlE~~~~el~~~vD~llr~l 148 (222)
T KOG4514|consen 99 APSSAHATPLPSMGPIQSRNIPEVDPSVLSDLELEAQELASSVDNLLRNL 148 (222)
T ss_pred CCCccccCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555544 3455678899863 33444432221113455555443
No 37
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=29.95 E-value=22 Score=25.16 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=11.0
Q ss_pred EeCCCCeEEEeccc
Q 031875 119 RIEDTDSVCLWLGA 132 (151)
Q Consensus 119 ~I~~~d~V~LWLGA 132 (151)
.|+..=+|+||||-
T Consensus 62 ~i~akl~v~lWlGl 75 (76)
T PF08150_consen 62 KIPAKLRVYLWLGL 75 (76)
T ss_pred cEeEEEEEEEEccc
Confidence 56666689999995
No 38
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=29.64 E-value=2e+02 Score=21.68 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 031875 47 LDVNSALAFLQERLQQYKLVEMKLLAQQRDL 77 (151)
Q Consensus 47 ~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L 77 (151)
..+..-++....+|++|..+-..|..+++.|
T Consensus 38 ~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 38 KEAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778899999999999888888888777
No 39
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.01 E-value=89 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHH
Q 031875 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (151)
Q Consensus 52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdik 85 (151)
-|..++....+||.|..+|+.+...|+.+.-++.
T Consensus 17 eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 17 ELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678899999999999999999888888776555
No 40
>PRK14127 cell division protein GpsB; Provisional
Probab=28.80 E-value=1.5e+02 Score=22.18 Aligned_cols=7 Identities=43% Similarity=0.990 Sum_probs=4.2
Q ss_pred ccHHHHh
Q 031875 36 EDVQTFL 42 (151)
Q Consensus 36 edV~~~~ 42 (151)
+.|++||
T Consensus 26 ~EVD~FL 32 (109)
T PRK14127 26 DEVDKFL 32 (109)
T ss_pred HHHHHHH
Confidence 4566666
No 41
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.35 E-value=1.7e+02 Score=20.14 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHH
Q 031875 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (151)
Q Consensus 48 ~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe 89 (151)
+.+.++..+.........--..+..++..+..++-++++.|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677776666666666666666677776666666553
No 42
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.55 E-value=24 Score=25.57 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHH
Q 031875 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (151)
Q Consensus 49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdik 85 (151)
|+.-|..+...|..+..-=..|.++...|..++.+++
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333344444444444333445555555555554443
No 43
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=26.80 E-value=1.6e+02 Score=24.28 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHH
Q 031875 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (151)
Q Consensus 52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktL 88 (151)
+..+.-.+|+||+-+=. ...+...++.+|+.+++.|
T Consensus 63 lydnYYkL~~KY~~LK~-~~~~~~~l~~~i~~le~~l 98 (196)
T PF15272_consen 63 LYDNYYKLYSKYQELKK-SSKQSEDLQSRISNLEKQL 98 (196)
T ss_pred HHHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHHHH
Confidence 34444556789988876 6667778899999999888
No 44
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.05 E-value=2e+02 Score=28.01 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=28.2
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHH
Q 031875 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKL 70 (151)
Q Consensus 27 rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l 70 (151)
-|+|.. .|+.-..++...+.+++.+|..+.+.-.+|......+
T Consensus 497 ~Glp~~-ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~ 539 (782)
T PRK00409 497 LGLPEN-IIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEA 539 (782)
T ss_pred hCcCHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366653 6788888887655688888888877555444444333
No 45
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=25.82 E-value=69 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEccccceeeeEeCCCCeEEEecc
Q 031875 106 ADFEVSEGIFSRARIEDTDSVCLWLG 131 (151)
Q Consensus 106 t~f~L~d~lyakA~I~~~d~V~LWLG 131 (151)
++|-.-+|+|+.++....++|.+-+-
T Consensus 3 ~hf~P~~gvYvYfR~~~~~tVmVilN 28 (78)
T PF10438_consen 3 KHFAPQDGVYVYFRYYDGKTVMVILN 28 (78)
T ss_dssp EE---BTTEEEEEEEESSEEEEEEEE
T ss_pred eeECccCCEEEEEEEcCCCEEEEEEc
Confidence 68889999999999999998877653
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.65 E-value=4.1e+02 Score=22.47 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=24.6
Q ss_pred eeEEEEccccceeeeEeCCCCeEEEecccceeeee
Q 031875 104 LTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138 (151)
Q Consensus 104 ~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY 138 (151)
+-+..+..+.+++++.||+.+--.+-.|..|.+.+
T Consensus 300 l~~i~~~~~~~~v~~~v~~~~~~~i~~G~~v~v~~ 334 (423)
T TIGR01843 300 LMEIVPEDDPLEIEAKLSPKDIGFVHVGQPAEIKF 334 (423)
T ss_pred eEEEecCCCcEEEEEEEChhhhhhhCCCCceEEEE
Confidence 44444445678899999888877777777777654
No 47
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=25.47 E-value=2.4e+02 Score=21.41 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCCCcccccccHHHHhcc---------------CC--cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 031875 27 RGIPAAQFVEDVQTFLSQ---------------LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQA 79 (151)
Q Consensus 27 rgIP~A~FiedV~~~~~~---------------~~--~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~ 79 (151)
...|...|-+++..|... || .+.+..+++++++..+.+-.+..+.+....-..
T Consensus 60 ~~~~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ 129 (144)
T PF11221_consen 60 APDPPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEE 129 (144)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777766554322 33 244555566666666666666555554444333
No 48
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=24.85 E-value=1.5e+02 Score=28.29 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=46.7
Q ss_pred ccccccHHHHhccCC--cCHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q 031875 32 AQFVEDVQTFLSQLD--LDVNSALAFLQERLQ--------QYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (151)
Q Consensus 32 A~FiedV~~~~~~~~--~~~e~~l~~l~e~~~--------KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k 97 (151)
..|-.+-++|+.-.. ++|..-++.|.+++. +|+.++.++.+.-+.+. +=|.+-+.-.=+++|+.|
T Consensus 508 ~dF~~eY~EYreLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~-~dp~y~eeK~RceYLhsK 582 (604)
T KOG4796|consen 508 KDFEAEYDEYRELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIR-KDPNYMEEKQRCEYLHSK 582 (604)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhh-cCccHHHHHHHHHHHHHH
Confidence 456666777775542 233333444444444 89999999999999999 889998888888888776
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=2.3e+02 Score=26.33 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=52.3
Q ss_pred CCCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Q 031875 22 PTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98 (151)
Q Consensus 22 ~~~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~ 98 (151)
+.+..|.+|+ .++|+... |...++..|.-...-=+.-|.+++.=..----.+-|-+++|+.-.+++.+.
T Consensus 19 ~~kkarK~P~------Ledfls~r--DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 19 TIKKARKMPE------LEDFLSNR--DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred cchhhhcCch------HHHHHhcc--cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence 4456677777 69999887 677777766665544455556777777777788899999999999999864
No 50
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.22 E-value=2.7e+02 Score=20.04 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHH
Q 031875 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (151)
Q Consensus 48 ~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe 89 (151)
+.+.++..+.........--..+..+...+..++-++++.|.
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777666666777777777777777777765
No 51
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=23.86 E-value=32 Score=29.58 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=16.4
Q ss_pred EEEecccceeeeecHHHHhhh
Q 031875 126 VCLWLGANVMLEYSCDEVYLF 146 (151)
Q Consensus 126 V~LWLGAnVMlEY~ldEA~el 146 (151)
..=|||-|+-|+|..|==++.
T Consensus 118 L~PWL~vN~KVsy~cD~KkDe 138 (260)
T PF11079_consen 118 LTPWLGVNVKVSYQCDRKKDE 138 (260)
T ss_pred ccceeEEeEEEEEeeccchHH
Confidence 346999999999998854443
No 52
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=23.28 E-value=45 Score=24.08 Aligned_cols=15 Identities=27% Similarity=0.897 Sum_probs=11.7
Q ss_pred eCCCCeEEEecccce
Q 031875 120 IEDTDSVCLWLGANV 134 (151)
Q Consensus 120 I~~~d~V~LWLGAnV 134 (151)
++..++|+||.|.|.
T Consensus 83 l~~~~~I~iW~~~~~ 97 (124)
T PF08874_consen 83 LPEDDPIVIWYGDNA 97 (124)
T ss_pred CCCCCEEEEEeCCCH
Confidence 556679999999763
No 53
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.72 E-value=2.3e+02 Score=21.32 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 031875 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (151)
Q Consensus 55 ~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~ 90 (151)
.|....+..+..-.+..++...|+.+|.|+.+.|+-
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777888899999999999999999987
No 54
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=22.20 E-value=2.2e+02 Score=20.66 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=40.5
Q ss_pred ccccccHHHHhccCCcCHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q 031875 32 AQFVEDVQTFLSQLDLDVNSALAFLQER----------LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (151)
Q Consensus 32 A~FiedV~~~~~~~~~~~e~~l~~l~e~----------~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k 97 (151)
++|=++-.+|..-. ..++.+.+.|.++ -..|+-++ .+.+.-+.++.+=|+....-.-+.+|..|
T Consensus 15 ~eF~~~y~EYk~L~-~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~K 88 (101)
T PF07303_consen 15 AEFNDDYDEYKELH-AEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHNK 88 (101)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 45556666665433 3455555555444 35678888 88888888887788888888888888765
No 55
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.91 E-value=1e+02 Score=28.64 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhcccC
Q 031875 83 DIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTS 150 (151)
Q Consensus 83 dikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~kn 150 (151)
|-+++++=+..|-++- +....++++.--|--+.+--|+.|.+-+|+|..-+-+.--|.+++..|
T Consensus 28 dye~~~erl~~~~kkL----s~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R 91 (514)
T KOG3130|consen 28 DYEALRERLSTLPKKL----SYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHR 91 (514)
T ss_pred hHHHHHHHHHHhhhhc----ccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHH
Confidence 4445555555565553 588999999999999999999999999999999988888888887644
No 56
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=21.56 E-value=48 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=22.4
Q ss_pred ceeeeEeCCCCeEEEecccc--eeeeecHHH
Q 031875 114 IFSRARIEDTDSVCLWLGAN--VMLEYSCDE 142 (151)
Q Consensus 114 lyakA~I~~~d~V~LWLGAn--VMlEY~ldE 142 (151)
.|.||+ |=.++|-|.||+. |.+||++++
T Consensus 214 ~ftKat-pLs~rV~lsls~~~P~~vey~i~~ 243 (260)
T KOG1636|consen 214 QFTKAT-PLSDRVTLSLSSEVPVVVEYKIED 243 (260)
T ss_pred Hhhccc-cccceEEEEecCCCcEEEEEeccc
Confidence 477775 4489999999976 688999886
No 57
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.49 E-value=1.4e+02 Score=19.24 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHhHHHHH
Q 031875 48 DVNSALAFLQERLQQYKLVE 67 (151)
Q Consensus 48 ~~e~~l~~l~e~~~KYk~mE 67 (151)
..+..++.||..+++||-.+
T Consensus 10 aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 10 ALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999998765
No 58
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.46 E-value=1.8e+02 Score=24.27 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=43.8
Q ss_pred CCCCCcccccccHHHHhccCC-cCHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhh
Q 031875 26 RRGIPAAQFVEDVQTFLSQLD-LDVNSALA-FLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAK 97 (151)
Q Consensus 26 ~rgIP~A~FiedV~~~~~~~~-~~~e~~l~-~l~e~~~KYk~mE~~l~~~~~~L---~~kIPdikktLe~V~~L~~k 97 (151)
.-|||.+.||--|.++++.-. --.+...+ .++..-+-|+|||.- -..+..+ ..=.|.+++-+++.+-+..+
T Consensus 105 EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l-Y~~Lm~fdyP~~l~~~LR~K~Dvar~~lek 180 (204)
T COG2178 105 ELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL-YEELMEFDYPKALVPGLRQKQDVARSLLEK 180 (204)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHhcCCchhhhhhHHHHHHHHHHHHHH
Confidence 468999999999998886532 23333333 677778889999853 2222222 22334566666666655544
No 59
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.23 E-value=3.7e+02 Score=20.34 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHH
Q 031875 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (151)
Q Consensus 49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdik 85 (151)
...||+-||..+.+|-.-...+.-.+.-|+.+|-.++
T Consensus 2 LpGVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LE 38 (134)
T PF08232_consen 2 LPGVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLE 38 (134)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3568888888888888777666666666666665443
No 60
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=20.94 E-value=4.8e+02 Score=26.26 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhc----------CCCceeEEEEccccceeee
Q 031875 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE----------GGEALTADFEVSEGIFSRA 118 (151)
Q Consensus 49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~----------~~e~~et~f~L~d~lyakA 118 (151)
||.+|+..|++.-+-+.+ .+++.+..+||+.. .+|.+.|.+|+. +..-+.-.=.|+=|-|.++
T Consensus 573 VEnvlksyqqr~~Rk~QL------EkEM~kagLpd~~q-~qMrkmL~QKESnYiRLkRaKMdKSmFvkik~iGvGAFGeV 645 (1034)
T KOG0608|consen 573 VENVLKSYQQREKRKKQL------EKEMVKAGLPDIMQ-NQMRKMLQQKESNYIRLKRAKMDKSMFVKIKTIGVGAFGEV 645 (1034)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHhcCCHHHH-HHHHHHHHhhhhhHHHHHHhhccccceEEEeeeccccccee
Confidence 555555554443333333 34567889999876 477888877732 1111444456788888877
Q ss_pred EeC
Q 031875 119 RIE 121 (151)
Q Consensus 119 ~I~ 121 (151)
++.
T Consensus 646 ~Lv 648 (1034)
T KOG0608|consen 646 CLV 648 (1034)
T ss_pred EEE
Confidence 664
No 61
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.86 E-value=3.1e+02 Score=21.71 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 031875 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (151)
Q Consensus 48 ~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~ 95 (151)
+.+..+..++..+..+.-....|..++..+..||-+++.-..++..-.
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888999999999999999999999999988887765543
No 62
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=20.37 E-value=1.3e+02 Score=27.11 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=50.0
Q ss_pred CCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 031875 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (151)
Q Consensus 24 ~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~ 95 (151)
....|.|.+.+...+.+|+.+. .-...++=|++||.--.........=||.|+..+.-++...
T Consensus 291 ~~~~~~~~~~l~s~lrsfvqk~---------l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kR 353 (373)
T PF14911_consen 291 VGSSGEPREQLTSVLRSFVQKY---------LAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKR 353 (373)
T ss_pred ccCcchHHHHHHHHHHHHHHHH---------hhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455788888888888887664 23345688999999999999999999999999999888753
No 63
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=20.34 E-value=2.5e+02 Score=20.72 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCC-ceeEEEEcccc---ceeeeE
Q 031875 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGE-ALTADFEVSEG---IFSRAR 119 (151)
Q Consensus 68 ~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e-~~et~f~L~d~---lyakA~ 119 (151)
...+++..+|+.-|-++++--+.|+.+..+-.+++ +-++.|.++=| .|-++.
T Consensus 12 ~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~~i~~~~Kf~~~L~~~~~~~~~~ 67 (102)
T PF07097_consen 12 AKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNNHIKKDTKFELNLGDRFGVLKCS 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCcchhceecccccceEEEe
Confidence 35678888999999999999999999987743333 35556665555 454544
No 64
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.11 E-value=3.3e+02 Score=22.57 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=43.2
Q ss_pred cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q 031875 47 LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (151)
Q Consensus 47 ~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k 97 (151)
-+.+..+..++..++.-.-+...|..+...|..||-+++.=++++..-...
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888999999999999999999999999999999888877665443
Done!