Query 031876
Match_columns 151
No_of_seqs 125 out of 1045
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 4.9E-46 1.1E-50 270.5 16.0 136 15-150 5-140 (141)
2 KOG1735 Actin depolymerizing f 100.0 1.9E-40 4E-45 238.8 11.3 136 16-151 1-141 (146)
3 cd00013 ADF Actin depolymerisa 100.0 4.3E-39 9.2E-44 230.6 15.4 132 18-150 1-132 (132)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 4.7E-38 1E-42 224.0 13.7 127 24-151 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 1.5E-36 3.3E-41 216.7 15.0 127 24-151 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 2.5E-35 5.3E-40 209.1 7.6 114 16-141 1-118 (122)
7 KOG1736 Glia maturation factor 99.9 4.5E-26 9.8E-31 158.9 11.7 130 20-150 8-140 (143)
8 KOG1747 Protein tyrosine kinas 99.9 2.7E-24 5.8E-29 170.0 9.7 126 16-150 3-135 (342)
9 KOG1747 Protein tyrosine kinas 99.9 9.8E-24 2.1E-28 166.9 11.7 131 17-150 172-310 (342)
10 KOG3655 Drebrins and related a 99.7 2.4E-17 5.2E-22 137.2 12.3 132 15-151 2-134 (484)
11 PRK11347 antitoxin ChpS; Provi 44.2 57 0.0012 21.3 4.2 53 17-76 11-63 (83)
12 PRK09798 antitoxin MazE; Provi 39.5 86 0.0019 20.4 4.5 54 17-76 12-66 (82)
13 PF11341 DUF3143: Protein of u 30.1 57 0.0012 20.4 2.3 30 97-126 30-60 (63)
14 PF01890 CbiG_C: Cobalamin syn 28.8 40 0.00087 23.5 1.7 26 6-36 2-27 (121)
15 cd05703 S1_Rrp5_repeat_hs12_sc 28.4 1E+02 0.0022 19.2 3.4 52 4-56 16-70 (73)
16 cd01271 Fe65_C Fe65 C-terminal 28.0 2.2E+02 0.0049 20.2 8.0 32 94-125 92-123 (124)
17 COG0539 RpsA Ribosomal protein 27.4 1.2E+02 0.0027 26.9 4.8 73 4-77 379-452 (541)
18 COG1504 Uncharacterized conser 27.0 1.1E+02 0.0023 21.5 3.5 33 5-37 64-111 (121)
19 KOG2130 Phosphatidylserine-spe 26.6 67 0.0014 26.8 2.8 37 18-55 192-228 (407)
20 cd05705 S1_Rrp5_repeat_hs14 S1 26.4 1.2E+02 0.0025 19.0 3.5 26 30-55 48-73 (74)
21 PF06576 DUF1133: Protein of u 25.7 35 0.00076 25.6 1.0 35 14-49 66-100 (176)
22 KOG4037 Photoreceptor synaptic 25.1 2.6E+02 0.0055 21.4 5.5 64 22-85 60-136 (240)
23 COG0081 RplA Ribosomal protein 24.5 1.7E+02 0.0038 23.0 4.7 36 10-49 132-169 (228)
24 PRK07027 cobalamin biosynthesi 23.0 73 0.0016 22.3 2.2 26 6-36 4-29 (126)
25 KOG2313 Stress-induced protein 22.8 1E+02 0.0022 21.1 2.7 31 106-140 66-99 (100)
26 COG1753 Predicted antotoxin, c 22.4 78 0.0017 20.3 2.0 23 15-37 1-23 (74)
27 PF03400 DDE_Tnp_IS1: IS1 tran 20.4 1.8E+02 0.0039 20.6 3.8 44 36-79 17-61 (131)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=4.9e-46 Score=270.46 Aligned_cols=136 Identities=69% Similarity=1.189 Sum_probs=129.9
Q ss_pred ccccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCcc
Q 031876 15 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 94 (151)
Q Consensus 15 m~~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~ 94 (151)
|++|||+++|+|+++|++||.++.+|||+|+|+.++++|++++++..+.+|+||++.||+++|||++|||+|.+++|+++
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence 67899999999999999999887789999999999889999987666678999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 031876 95 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 150 (151)
Q Consensus 95 ~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~ 150 (151)
+|++||+|||++||+|.||+|||+|++|++.|+|+++++||+|.+||+++.+.+++
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987
No 2
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=1.9e-40 Score=238.85 Aligned_cols=136 Identities=58% Similarity=1.026 Sum_probs=128.4
Q ss_pred cccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCC---CCCeeeEEEEEEeecCC--
Q 031876 16 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLP---DNDCRYAVYDFDFVTSE-- 90 (151)
Q Consensus 16 ~~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~---~~~pry~~~~~~~~~~~-- 90 (151)
++|||.++|+|+.+|++|+.++.+||++|+|+.++.+|++++.|+++.+|++|...|| +++|||++||++|++..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 5799999999999999999998899999999999899999998888999999999999 99999999999998843
Q ss_pred CCccccEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 031876 91 NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 151 (151)
Q Consensus 91 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~~ 151 (151)
+.+++|++||.|||++||+|+||+|||||++|+++|.|+++++||||++|++++.+.++|.
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~ 141 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLG 141 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999873
No 3
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=4.3e-39 Score=230.60 Aligned_cols=132 Identities=52% Similarity=0.923 Sum_probs=124.0
Q ss_pred cCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCccccE
Q 031876 18 SGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKI 97 (151)
Q Consensus 18 SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~ 97 (151)
||++++++|.++|++++.+++++|++|+|+.++++|+++++++...++++|.+.||+++|||++||+++.++ |+.++|+
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 689999999999999998867999999999988899999987644689999999999999999999998766 7889999
Q ss_pred EEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 031876 98 FFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 150 (151)
Q Consensus 98 vfI~w~Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~ 150 (151)
+||+|||++||+|.||+|||+|.+|++.++|+++++++++.+||+++.+.++|
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999875
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=4.7e-38 Score=223.97 Aligned_cols=127 Identities=43% Similarity=0.835 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCccccEEEEEEc
Q 031876 24 DHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWS 103 (151)
Q Consensus 24 ~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~ 103 (151)
|||+++|++++.+++++|++|+|+.+++.|+++++|+...+++||.+.||+++|||++||++++++ |+.++|++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 799999999999977999999999998999999987667899999999999999999999999877 7789999999999
Q ss_pred CCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 031876 104 PDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 151 (151)
Q Consensus 104 Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~~ 151 (151)
|++||+|+||+|||++++|++.+++++.+++++|++||+++.|.++|.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999873
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=1.5e-36 Score=216.72 Aligned_cols=127 Identities=46% Similarity=0.903 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCccccEEEEEEc
Q 031876 24 DHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWS 103 (151)
Q Consensus 24 ~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~ 103 (151)
++|.++|++|+.+++.+|++|+|+.++++|++++++.++.+|+||.+.||+++|||++||+++.++ +++++|++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 579999999999877999999999998999999987656789999999999999999999998775 5678999999999
Q ss_pred CCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 031876 104 PDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 151 (151)
Q Consensus 104 Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~~ 151 (151)
|++||+|.||+|||++.+|++.++|++..++|++.+||+++.|.+++.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999873
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=209.11 Aligned_cols=114 Identities=25% Similarity=0.558 Sum_probs=101.1
Q ss_pred cccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCC---eeeEEEEEEeecCCCC
Q 031876 16 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDND---CRYAVYDFDFVTSENC 92 (151)
Q Consensus 16 ~~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~---pry~~~~~~~~~~~g~ 92 (151)
|+|||.++++|.++|++|+.++.+|||+|+|++ ++|+|+++++ ..+|++|++.||+++ |||++||++
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 679999999999999999998889999999975 6899998876 568999999999988 999999873
Q ss_pred ccccEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCee-EEEEeCCcCCC
Q 031876 93 QKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIH-YEIQATDPSEM 141 (151)
Q Consensus 93 ~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~gi~-~~i~a~d~~el 141 (151)
++++||+|||++|++|.||+|||||++|++++.|++ ...++++.+|+
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 479999999999999999999999999999999975 45566666655
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.94 E-value=4.5e-26 Score=158.87 Aligned_cols=130 Identities=18% Similarity=0.382 Sum_probs=117.9
Q ss_pred CccCHHHHHHHHHHhhc-C--ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCcccc
Q 031876 20 MGVADHSKSTYLELQRK-K--VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSK 96 (151)
Q Consensus 20 i~i~~e~~~a~~~lk~~-~--~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k 96 (151)
.+|+++..+.++++|-+ + ...+++++|+.+..+|++++.--...+.+|+.+.||+++|||++|.|+++++||+..++
T Consensus 8 ~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stP 87 (143)
T KOG1736|consen 8 CKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTP 87 (143)
T ss_pred EEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCccccc
Confidence 46899999999999876 3 26699999999999999984322367788999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 031876 97 IFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 150 (151)
Q Consensus 97 ~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~ 150 (151)
++||||.|.+|+...+|+||++|.-+.+.. ++++.+++++.+|++.+++.++|
T Consensus 88 L~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L 140 (143)
T KOG1736|consen 88 LCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKL 140 (143)
T ss_pred EEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHh
Confidence 999999999999999999999999999988 68889999999999999999987
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.91 E-value=2.7e-24 Score=170.04 Aligned_cols=126 Identities=26% Similarity=0.463 Sum_probs=106.4
Q ss_pred cccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCC----CHHHHhhc-CCCCCeeeEEEEEEeecCC
Q 031876 16 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAE----SYDDFTAS-LPDNDCRYAVYDFDFVTSE 90 (151)
Q Consensus 16 ~~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~----~~~el~~~-L~~~~pry~~~~~~~~~~~ 90 (151)
+++||..++++...|++-+.++ .|.+...|+++ ++.+..+.++.. +|+.++.. |.+.+|||++|+.+.
T Consensus 3 ~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~nE--ql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds---- 75 (342)
T KOG1747|consen 3 HQTGIRATEALKKFLNEAKNGK-LRLIKIVIENE--QLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS---- 75 (342)
T ss_pred cccccchHHHHHHHHHhcccCc-eEEEEEEEecc--cccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC----
Confidence 4789999999999999999997 89998888875 787766655443 56666644 467899999999963
Q ss_pred CCccccEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCC--eeEEEEeCCcCCCCHHHHHhhh
Q 031876 91 NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDG--IHYEIQATDPSEMDLEVIRDRA 150 (151)
Q Consensus 91 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~g--i~~~i~a~d~~el~~~~i~~~~ 150 (151)
+..+|+||+|+||+||||+||+|||||++|++++++ +..+.++|+++||+...+.+.+
T Consensus 76 --~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 76 --KNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred --CCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 344899999999999999999999999999999986 4679999999999999887664
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.91 E-value=9.8e-24 Score=166.89 Aligned_cols=131 Identities=21% Similarity=0.401 Sum_probs=116.0
Q ss_pred ccCCc--cCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCcc
Q 031876 17 SSGMG--VADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 94 (151)
Q Consensus 17 ~SGi~--i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~ 94 (151)
+.||. +++++.+|+++++.++ .+||+|+||.+++.|.+.++. +..+.+||...+|.+.|||.+|.|.+++. |...
T Consensus 172 l~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~-~~~e~sdL~s~vP~d~prY~ff~~~ht~e-GD~~ 248 (342)
T KOG1747|consen 172 LQGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTD-TCTEPSDLPSRVPRDGPRYHFFLFKHTHE-GDPL 248 (342)
T ss_pred ccceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccC-CCCChHHhhhhcCCCCCceEEEecccccC-CCCc
Confidence 56775 8899999999999997 999999999998999998874 35789999999999999999999998776 5567
Q ss_pred ccEEEEEEcCC-CCCcchhhhhhhhHHHHHHhcC---C--eeEEEEeCCcCCCCHHHHHhhh
Q 031876 95 SKIFFIAWSPD-VSRIRAKMLYATSKDRFRRELD---G--IHYEIQATDPSEMDLEVIRDRA 150 (151)
Q Consensus 95 ~k~vfI~w~Pd-~a~vk~KMlYassk~~l~~~l~---g--i~~~i~a~d~~el~~~~i~~~~ 150 (151)
+..+|||.||. +|+||+||+|||||..|...+. | +..+|++.|.+||+++.+.+.+
T Consensus 249 es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~ 310 (342)
T KOG1747|consen 249 ESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEEL 310 (342)
T ss_pred eeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhh
Confidence 89999999999 9999999999999988877775 4 4679999999999999887754
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.74 E-value=2.4e-17 Score=137.16 Aligned_cols=132 Identities=17% Similarity=0.304 Sum_probs=115.7
Q ss_pred ccccCCccCHHHHHHHHHHhhcCc-eeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCeeeEEEEEEeecCCCCc
Q 031876 15 NASSGMGVADHSKSTYLELQRKKV-HRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQ 93 (151)
Q Consensus 15 m~~SGi~i~~e~~~a~~~lk~~~~-~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~ 93 (151)
|...+-.=..+|.++|+++..+.. +.|++|+++...+.+.+..++ ..++++|.+.+......|+++++. +.++.
T Consensus 2 ~~l~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~--~~~~~e~~~df~~~kv~yg~~rv~---D~~s~ 76 (484)
T KOG3655|consen 2 MPLNTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSG--EGGLEEFLGDFDSGKVMYGFCRVK---DPMSG 76 (484)
T ss_pred CcccccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccc--cccHHHHhhhcccCceeEEEEEec---CcccC
Confidence 333444446789999999988864 889999999876666666554 578999999999999999999995 66788
Q ss_pred cccEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 031876 94 KSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 151 (151)
Q Consensus 94 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~gi~~~i~a~d~~el~~~~i~~~~~ 151 (151)
+.|+|||.||++++++-+|-.+|+.++.+++.|+|+|++|+|++.+||+.+.|.++|+
T Consensus 77 l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 77 LPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred CcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999874
No 11
>PRK11347 antitoxin ChpS; Provisional
Probab=44.20 E-value=57 Score=21.34 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=34.5
Q ss_pred ccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCC
Q 031876 17 SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDND 76 (151)
Q Consensus 17 ~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~ 76 (151)
+.||.++.++.+.+ .+..+. -+-+.+.+ +.|++..... .-+++||++..+++.
T Consensus 11 S~~vriPk~il~~l-~l~~G~---~v~i~v~~--~~iii~p~~~-~~tL~eLla~~~~~~ 63 (83)
T PRK11347 11 SAGMVIPNIVMKEL-NLQPGQ---SVEAQVSN--NQLILTPISR-RYSLDELLAQCDMNA 63 (83)
T ss_pred ceeEEeCHHHHHHc-CCCCCC---EEEEEEEC--CEEEEEECCC-CCCHHHHHhcCCccc
Confidence 34789999888876 455554 23334344 4677766533 367999999887654
No 12
>PRK09798 antitoxin MazE; Provisional
Probab=39.51 E-value=86 Score=20.44 Aligned_cols=54 Identities=9% Similarity=0.217 Sum_probs=34.5
Q ss_pred ccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCC-CCCCHHHHhhcCCCCC
Q 031876 17 SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGG-PAESYDDFTASLPDND 76 (151)
Q Consensus 17 ~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~-~~~~~~el~~~L~~~~ 76 (151)
+-||.++..+.+++ .+..+. -+-+.+.+ +.|++..... +.-+++||++.+.++.
T Consensus 12 S~~vRIPk~~l~~l-~l~~g~---~vei~v~~--~~iiI~p~~~~~r~~l~eLla~~~~~~ 66 (82)
T PRK09798 12 SPAVRIPATLMQAL-NLNIDD---EVKIDLVD--GKLIIEPVRKEPVFTLAELVNDITPEN 66 (82)
T ss_pred cceEEcCHHHHHHc-CCCCCC---EEEEEEEC--CEEEEEECCCCCCCCHHHHHhcCCCcC
Confidence 34788998888776 344444 33445544 4677765432 2247999999987654
No 13
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=30.09 E-value=57 Score=20.41 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=25.7
Q ss_pred EEEEEEcCCC-CCcchhhhhhhhHHHHHHhc
Q 031876 97 IFFIAWSPDV-SRIRAKMLYATSKDRFRREL 126 (151)
Q Consensus 97 ~vfI~w~Pd~-a~vk~KMlYassk~~l~~~l 126 (151)
=+.|.|.+.+ ..++...-|+-+|+.+.+++
T Consensus 30 ~L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 30 DLVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 3578888888 88888999999999998875
No 14
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=28.84 E-value=40 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.486 Sum_probs=17.0
Q ss_pred EeeCcccccccccCCccCHHHHHHHHHHhhc
Q 031876 6 ITFGFGCQTNASSGMGVADHSKSTYLELQRK 36 (151)
Q Consensus 6 ~~~~~~~~~m~~SGi~i~~e~~~a~~~lk~~ 36 (151)
+.+|+||.+ |++ .+++.+++++.-..
T Consensus 2 l~~GiGcrr----~~~-~~~i~~ai~~~l~~ 27 (121)
T PF01890_consen 2 LVLGIGCRR----GAP-AEEIEEAIEQALAE 27 (121)
T ss_dssp EEEEEEE-S----S---HHHHHHHHHHHHHH
T ss_pred EEEEeCcCC----CCC-HHHHHHHHHHHHHH
Confidence 678999999 775 56777777766444
No 15
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.37 E-value=1e+02 Score=19.17 Aligned_cols=52 Identities=8% Similarity=0.146 Sum_probs=32.4
Q ss_pred EEEeeCcccccccccCCccCHH---HHHHHHHHhhcCceeEEEEEEeCCCcEEEEe
Q 031876 4 LFITFGFGCQTNASSGMGVADH---SKSTYLELQRKKVHRYVIFKIDEKKKEVVVE 56 (151)
Q Consensus 4 ~~~~~~~~~~~m~~SGi~i~~e---~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~ 56 (151)
+|+.++-+-.|... -..++++ ..+.-+.++.+...+..+..++.+++.|.|.
T Consensus 16 ~~V~l~~~i~G~i~-~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls 70 (73)
T cd05703 16 VWLTISPDVKGRIP-LLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLS 70 (73)
T ss_pred EEEEeCCCcEEEEE-HHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 46666555444221 1123322 4445566788877889999999988888875
No 16
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.00 E-value=2.2e+02 Score=20.19 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=24.4
Q ss_pred cccEEEEEEcCCCCCcchhhhhhhhHHHHHHh
Q 031876 94 KSKIFFIAWSPDVSRIRAKMLYATSKDRFRRE 125 (151)
Q Consensus 94 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~ 125 (151)
..=..+++||+++|..-.+.+=+++...-++.
T Consensus 92 ~~f~ChVF~ce~~A~~ls~av~aAc~lrYQkc 123 (124)
T cd01271 92 QRFECHVFWCEPNAGNVSKAVEAACKLRYQKC 123 (124)
T ss_pred CcEEEEEEEecCChHHHHHHHHHHHHHHHhhc
Confidence 34568999999999888888877776655443
No 17
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=27.43 E-value=1.2e+02 Score=26.87 Aligned_cols=73 Identities=8% Similarity=0.175 Sum_probs=51.1
Q ss_pred EEEeeCccccccc-ccCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCe
Q 031876 4 LFITFGFGCQTNA-SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDC 77 (151)
Q Consensus 4 ~~~~~~~~~~~m~-~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l~~~~~~~~~~~el~~~L~~~~p 77 (151)
.|+-.+.|--|+. .|-+.+...-..+. .++.+...+..++.++.+++.|.+.-.--...+|+++...++....
T Consensus 379 ~fv~le~gidG~vh~~d~sw~~~~~~~~-~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~~~~~~~~~ 452 (541)
T COG0539 379 AFVELEGGIDGLVHLSDLSWDRPGEEAE-KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFSEKYKKGSV 452 (541)
T ss_pred eEEccCCCccceEEHHhcCccccCcHHH-hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhHhhccCCCe
Confidence 3566666666654 44566666666777 8899888999999999998888874321123478888887765544
No 18
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=27.04 E-value=1.1e+02 Score=21.55 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=22.6
Q ss_pred EEeeCcccccccccC---------------CccCHHHHHHHHHHhhcC
Q 031876 5 FITFGFGCQTNASSG---------------MGVADHSKSTYLELQRKK 37 (151)
Q Consensus 5 ~~~~~~~~~~m~~SG---------------i~i~~e~~~a~~~lk~~~ 37 (151)
.|.||-|-.||...+ ...+||++..|++++..+
T Consensus 64 ~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 64 VIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred EEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 366888888876544 235678888888887653
No 19
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=26.63 E-value=67 Score=26.81 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=29.1
Q ss_pred cCCccCHHHHHHHHHHhhcCceeEEEEEEeCCCcEEEE
Q 031876 18 SGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVV 55 (151)
Q Consensus 18 SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~~~~i~l 55 (151)
+||.|+|....||+.+-.++ .||++|--....+.|.+
T Consensus 192 tsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 192 TSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKV 228 (407)
T ss_pred ceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceee
Confidence 57899999999999999987 78999865544344444
No 20
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.43 E-value=1.2e+02 Score=18.95 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.8
Q ss_pred HHHHhhcCceeEEEEEEeCCCcEEEE
Q 031876 30 YLELQRKKVHRYVIFKIDEKKKEVVV 55 (151)
Q Consensus 30 ~~~lk~~~~~~~iif~i~~~~~~i~l 55 (151)
-+.++.+...+..+..++.+...|.|
T Consensus 48 ~~~~~~G~~v~~kVl~id~~~~~i~L 73 (74)
T cd05705 48 NKYLPEGKLLTAKVLSVNSEKNLVEL 73 (74)
T ss_pred hcccCCCCEEEEEEEEEECCCCEEec
Confidence 35567777788999999987777754
No 21
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=25.65 E-value=35 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.1
Q ss_pred cccccCCccCHHHHHHHHHHhhcCceeEEEEEEeCC
Q 031876 14 TNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEK 49 (151)
Q Consensus 14 ~m~~SGi~i~~e~~~a~~~lk~~~~~~~iif~i~~~ 49 (151)
+|..+|++ .||+..-++++..+|..-++.|+-|++
T Consensus 66 ~mkKsGi~-k~EL~~~~~eil~gK~kS~La~ctD~E 100 (176)
T PF06576_consen 66 RMKKSGIS-KPELEAFLREILNGKQKSWLAFCTDDE 100 (176)
T ss_pred HHHHhcCC-cHHHHHHHHHHhCcccccccceecchH
Confidence 45567777 788888888888877656777776543
No 22
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.07 E-value=2.6e+02 Score=21.43 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHhhcC---------ceeEEEEEEeC-CCcEEEEeeCCCCCCCHHHH---hhcCCCCCeeeEEEEEE
Q 031876 22 VADHSKSTYLELQRKK---------VHRYVIFKIDE-KKKEVVVEKTGGPAESYDDF---TASLPDNDCRYAVYDFD 85 (151)
Q Consensus 22 i~~e~~~a~~~lk~~~---------~~~~iif~i~~-~~~~i~l~~~~~~~~~~~el---~~~L~~~~pry~~~~~~ 85 (151)
|+|+-.-.++.+-.+- .+.+..|+|.+ +...|..+-..++..+-+.+ .+.|+++..||+=|.|.
T Consensus 60 itP~dVL~L~~IT~dyLCSp~aNvy~IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFt 136 (240)
T KOG4037|consen 60 ITPEDVLGLQRITGDYLCSPEANVYKIDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFT 136 (240)
T ss_pred CChHHhhccccccCCceeCcccceEEeeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeec
Confidence 4555555555543331 14577777765 33444443322322222223 35678899999998885
No 23
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=24.52 E-value=1.7e+02 Score=22.98 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=28.3
Q ss_pred cccccccccCCc--cCHHHHHHHHHHhhcCceeEEEEEEeCC
Q 031876 10 FGCQTNASSGMG--VADHSKSTYLELQRKKVHRYVIFKIDEK 49 (151)
Q Consensus 10 ~~~~~m~~SGi~--i~~e~~~a~~~lk~~~~~~~iif~i~~~ 49 (151)
.|-.|.|.+... +++|+.++++++|.++ +.|+.++.
T Consensus 132 LGPRGlMP~Pk~gTvt~Dv~~av~~~K~g~----v~~R~dk~ 169 (228)
T COG0081 132 LGPRGLMPNPKTGTVTDDVAKAVEELKKGT----VEFRADKA 169 (228)
T ss_pred cCCCCCCCCCCCCCCCcCHHHHHHHHhcCc----EEEEECCC
Confidence 467788888888 9999999999999985 34555554
No 24
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=22.98 E-value=73 Score=22.32 Aligned_cols=26 Identities=19% Similarity=0.538 Sum_probs=18.4
Q ss_pred EeeCcccccccccCCccCHHHHHHHHHHhhc
Q 031876 6 ITFGFGCQTNASSGMGVADHSKSTYLELQRK 36 (151)
Q Consensus 6 ~~~~~~~~~m~~SGi~i~~e~~~a~~~lk~~ 36 (151)
+.+|+||.+ |++ .+++.+++++.-..
T Consensus 4 ~~vGIGcr~----~~~-~e~i~~ai~~~L~~ 29 (126)
T PRK07027 4 VALGIGCRR----GVP-AEQIEAAIRAALAQ 29 (126)
T ss_pred EEEeeccCC----CCC-HHHHHHHHHHHHHH
Confidence 478999999 665 56677777666443
No 25
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=22.81 E-value=1e+02 Score=21.07 Aligned_cols=31 Identities=35% Similarity=0.634 Sum_probs=21.7
Q ss_pred CCCcchhhhhhhhHHHHHHhcC--Cee-EEEEeCCcCC
Q 031876 106 VSRIRAKMLYATSKDRFRRELD--GIH-YEIQATDPSE 140 (151)
Q Consensus 106 ~a~vk~KMlYassk~~l~~~l~--gi~-~~i~a~d~~e 140 (151)
+..-|.||+| ..|++++. |+| ..|.+..|+|
T Consensus 66 s~v~RHRlVy----~~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVY----KALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHH----HHHHHHhhccceeEEEeeccCCCC
Confidence 5677999999 45556654 466 5777777665
No 26
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=22.40 E-value=78 Score=20.33 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.4
Q ss_pred ccccCCccCHHHHHHHHHHhhcC
Q 031876 15 NASSGMGVADHSKSTYLELQRKK 37 (151)
Q Consensus 15 m~~SGi~i~~e~~~a~~~lk~~~ 37 (151)
|.+-.|.|++|+-..+.++|.++
T Consensus 1 ~~~kTItI~ddvYe~L~kmK~g~ 23 (74)
T COG1753 1 MPTKTITISDDVYEKLVKMKRGK 23 (74)
T ss_pred CCcceeeecHHHHHHHHHHHccc
Confidence 34456899999999999999654
No 27
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.45 E-value=1.8e+02 Score=20.65 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=31.3
Q ss_pred cCceeEEEEEEeCCCcEEEEeeCCCC-CCCHHHHhhcCCCCCeee
Q 031876 36 KKVHRYVIFKIDEKKKEVVVEKTGGP-AESYDDFTASLPDNDCRY 79 (151)
Q Consensus 36 ~~~~~~iif~i~~~~~~i~l~~~~~~-~~~~~el~~~L~~~~pry 79 (151)
++...|+-+.++.+...|+--..|++ ..++..|.+.|++-++.+
T Consensus 17 K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 17 KKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred CCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 33467999999998877765444543 357888999887766554
Done!