BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031877
MSSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKL
NPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVR
RAGVVVDGLEKLAEDRVGRRLGFCHNGRSGL

High Scoring Gene Products

Symbol, full name Information P value
AT2G43310 protein from Arabidopsis thaliana 2.7e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031877
        (151 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2041066 - symbol:AT2G43310 "AT2G43310" species...   325  2.7e-29   1


>TAIR|locus:2041066 [details] [associations]
            symbol:AT2G43310 "AT2G43310" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC002335
            EMBL:AC004450 EMBL:AY074654 EMBL:AY219080 EMBL:AY954834
            IPI:IPI00532122 PIR:E84864 RefSeq:NP_181859.1 UniGene:At.12183
            UniGene:At.66352 UniGene:At.73236 ProteinModelPortal:O22846
            SMR:O22846 EnsemblPlants:AT2G43310.1 GeneID:818932
            KEGG:ath:AT2G43310 TAIR:At2g43310 eggNOG:NOG270175
            HOGENOM:HOG000114077 InParanoid:O22846 OMA:FRLKEIG PhylomeDB:O22846
            ProtClustDB:CLSN2683066 ArrayExpress:O22846 Genevestigator:O22846
            Uniprot:O22846
        Length = 133

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/118 (57%), Positives = 87/118 (73%)

Query:    15 YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
             +LLQL+LSCRKITAQV+     GSSTI+A+ASSS+Q+F +   + L  FP  + FWDS T
Sbjct:     8 HLLQLVLSCRKITAQVTQP---GSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query:    75 VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132
                VG+KLG +LRE+G+D V I+  EE+SRP + R  VLPLFDSVRR G+ VDG E+L
Sbjct:    65 ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.46    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  129 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.91u 0.11s 15.02t   Elapsed:  00:00:01
  Total cpu time:  14.91u 0.11s 15.02t   Elapsed:  00:00:01
  Start:  Fri May 10 05:22:25 2013   End:  Fri May 10 05:22:26 2013

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