BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031877
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase
           (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50
           A Resolution
 pdb|3IF2|B Chain B, Crystal Structure Of Putative Amino-Acid Aminotransferase
           (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50
           A Resolution
          Length = 444

 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 18  QLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWD 71
           +L L   K     +DT  A SS I++ A+ S     S +   L  F  RH  W+
Sbjct: 50  ELFLETYKALGNDNDTGKANSSAIISXANYSNPQGDSAFIDALVGFFNRHYDWN 103


>pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
          Length = 158

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 61  NPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVR 120
           N   + +R+ DS  + +  +            N  I ++++LS   +  I ++  FD + 
Sbjct: 88  NLLSRLYRYQDSQGISIDDES-----------NPWILMSDDLSDLIHTNIYLVETFDEIE 136

Query: 121 RAGVVVDGLEKLAE 134
           R    +DG+E++ E
Sbjct: 137 RYSGYLDGIERMLE 150


>pdb|3KKC|A Chain A, The Crystal Structure Of Tetr Transcriptional Regulator
          From Streptococcus Agalactiae 2603v
 pdb|3KKC|B Chain B, The Crystal Structure Of Tetr Transcriptional Regulator
          From Streptococcus Agalactiae 2603v
 pdb|3KKC|C Chain C, The Crystal Structure Of Tetr Transcriptional Regulator
          From Streptococcus Agalactiae 2603v
 pdb|3KKC|D Chain D, The Crystal Structure Of Tetr Transcriptional Regulator
          From Streptococcus Agalactiae 2603v
          Length = 177

 Score = 26.2 bits (56), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 29 QVSDTASAGSSTIVALASSSKQDFYSHYHSK 59
          Q +D +      ++ LA+  +  FYSHY SK
Sbjct: 26 QENDYSKITVQDVIGLANVGRSTFYSHYESK 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,945,584
Number of Sequences: 62578
Number of extensions: 135016
Number of successful extensions: 447
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)