BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031877
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6A5H2|ALR_PROAC Alanine racemase OS=Propionibacterium acnes (strain KPA171202 / DSM
16379) GN=alr PE=3 SV=1
Length = 375
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 49 KQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQ 108
K D Y H +++ + ++HR+ D V V + G +L E GI ++ L+ PA+
Sbjct: 38 KADAYGHGAVEVSRYVEKHRYADWLAVATVAE--GQELVEAGITLPILKLS-----PADP 90
Query: 109 RIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGF 143
M + +R V D LE +++ V RLG
Sbjct: 91 WDMDAAITSGIRLTVVDFDTLEAVSKAAV--RLGI 123
>sp|Q03149|WA_EMENI Conidial yellow pigment biosynthesis polyketide synthase
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=wA PE=1 SV=2
Length = 2157
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 46 SSSKQDFYSHYHSKLNPFPK-RHRFWDSNT-VVVVGQ-------KLGSQLREIGI-DNVM 95
+ S QDF++ + L+ K WD++ V + G G +RE G+ D
Sbjct: 391 ADSPQDFWNLLYKGLDVHRKVPEDRWDADAHVDLTGTATNTSKVPYGCWIREPGLFDPRF 450
Query: 96 INLA--EELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGF 143
N++ E L QR+ +L ++++ AG V D DRVG G
Sbjct: 451 FNMSPREALQADPAQRLALLTAYEALEGAGFVPDSTPSTQRDRVGIFYGM 500
>sp|A0LRS7|CH602_ACIC1 60 kDa chaperonin 2 OS=Acidothermus cellulolyticus (strain ATCC
43068 / 11B) GN=groL2 PE=3 SV=1
Length = 541
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 24 RKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLG 83
+++ + +D A G++T LA + ++ + + NP + R D+ V + +L
Sbjct: 74 KEVATKTNDVAGDGTTTATVLAQAMVREGLRNVAAGANPLALK-RGIDA-AVTAISDRLL 131
Query: 84 SQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVV 125
+Q RE+ + + N+A ++ ++ FD V + GV+
Sbjct: 132 AQAREVATKDEIANVATISAQDPAVGAVIADAFDKVGKDGVI 173
>sp|A0AKX6|Y2240_LISW6 UPF0342 protein lwe2240 OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=lwe2240 PE=3 SV=1
Length = 117
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 48 SKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPAN 107
S QD Y + + K RF D + Q G + ID+ +N+A+E+++
Sbjct: 24 SLQDAYREVNENADAKAKFERFRDVQVTIQEKQMTGQE-----IDDETVNVAQEVAQEVQ 78
Query: 108 QRIMVLPLFDSVRRAGVVVDGLEKL 132
+ +++ L + + +++ L ++
Sbjct: 79 ENELIVKLMEKEQAMSTIINDLNRI 103
>sp|P54391|YPIF_BACSU Uncharacterized protein YpiF OS=Bacillus subtilis (strain 168)
GN=ypiF PE=4 SV=1
Length = 148
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 98 LAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRV 137
L+EEL R R+ +LP + V R + V GL+ L E+ +
Sbjct: 47 LSEELERQLKGRVYLLPPYTYVDRNEITVQGLKDLREELI 86
>sp|A7GXS7|CMOA_CAMC5 tRNA (cmo5U34)-methyltransferase OS=Campylobacter curvus (strain
525.92) GN=cmoA PE=3 SV=1
Length = 234
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 65 KRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGV 124
K+ + + + VG L SQ+ ++ D VM+N + RP + +V ++D + GV
Sbjct: 94 KKAKAYGAKIKFSVGDVLESQICQM--DAVMMNYTLQFIRPPKRAQLVKSIYDGLNEGGV 151
Query: 125 VVDGLEKLAEDR 136
V + + ED+
Sbjct: 152 FVFSEKIIYEDK 163
>sp|P92960|KAT3_ARATH Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1
Length = 662
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%)
Query: 2 SSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLN 61
SS+ ++ S R L ++ R+ + V + S SS + A + + D S +
Sbjct: 21 SSTALSASTAEARSPLSILQFRRRSSKDVRNITSVSSSLLPAFGTFIEDDNPSSKPFIVL 80
Query: 62 PFPKRHRFWDSNTVVVVGQKLGSQLREIGID 92
F +R+R W+ V++VG + L E+ +
Sbjct: 81 HFDRRYRLWELFLVILVGYSAWASLFELAFE 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,125,397
Number of Sequences: 539616
Number of extensions: 1796666
Number of successful extensions: 5377
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5366
Number of HSP's gapped (non-prelim): 19
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)