Query 031877
Match_columns 151
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 10:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_O 50S ribosomal protein L 99.9 5.3E-22 1.8E-26 147.9 10.5 95 13-125 21-115 (116)
2 3bbo_Q Ribosomal protein L18; 99.8 3.9E-21 1.3E-25 151.4 7.2 97 14-126 65-161 (161)
3 1ovy_A 50S ribosomal protein L 99.8 2.7E-20 9.3E-25 139.9 8.1 95 12-126 26-120 (120)
4 3v2d_S 50S ribosomal protein L 99.8 5E-20 1.7E-24 137.4 9.0 90 14-126 23-112 (112)
5 2zjr_L 50S ribosomal protein L 99.8 2.6E-19 8.9E-24 133.9 3.8 89 14-126 26-114 (114)
6 1vq8_N 50S ribosomal protein L 99.7 1.4E-17 5E-22 133.3 11.2 99 14-130 32-134 (187)
7 3j21_O 50S ribosomal protein L 99.7 5.8E-17 2E-21 131.3 6.8 99 14-129 32-134 (203)
8 2zkr_n 60S ribosomal protein L 99.3 1.5E-11 5.3E-16 104.7 11.7 100 13-130 47-177 (297)
9 3u5e_D 60S ribosomal protein L 99.0 1.8E-09 6.1E-14 92.1 11.0 104 14-128 48-175 (297)
10 4a17_M RPL5, 60S ribosomal pro 99.0 1.6E-09 5.4E-14 92.5 10.6 105 13-128 47-175 (301)
11 3iz5_Q 60S ribosomal protein L 98.7 8.1E-09 2.8E-13 88.3 5.4 98 18-128 54-175 (304)
12 2vqe_K 30S ribosomal protein S 96.3 0.037 1.3E-06 41.6 9.6 99 12-133 14-112 (129)
13 3j20_M 30S ribosomal protein S 96.2 0.056 1.9E-06 41.3 10.2 114 1-134 1-120 (137)
14 3bbn_K Ribosomal protein S11; 95.8 0.03 1E-06 42.9 7.1 98 12-132 27-124 (140)
15 3r8n_K 30S ribosomal protein S 95.7 0.076 2.6E-06 39.3 8.9 96 14-132 6-101 (117)
16 2xzm_K RPS14E; ribosome, trans 92.9 0.68 2.3E-05 35.8 8.8 102 13-133 27-133 (151)
17 3u5c_O RP59A, 40S ribosomal pr 90.0 0.95 3.3E-05 34.4 6.8 105 11-133 11-119 (137)
18 1ht6_A AMY1, alpha-amylase iso 76.3 4.5 0.00015 33.0 5.5 60 68-128 7-87 (405)
19 3eya_A Pyruvate dehydrogenase 60.3 12 0.00041 31.7 5.0 43 77-129 4-47 (549)
20 2c31_A Oxalyl-COA decarboxylas 58.3 14 0.00047 31.4 5.0 43 77-129 11-53 (568)
21 2q28_A Oxalyl-COA decarboxylas 57.7 14 0.00048 31.2 5.0 42 78-129 10-51 (564)
22 1hvx_A Alpha-amylase; hydrolas 57.2 9.9 0.00034 32.0 4.0 70 45-127 1-99 (515)
23 4gqr_A Pancreatic alpha-amylas 52.7 24 0.00082 27.9 5.3 51 77-127 23-94 (496)
24 3fwz_A Inner membrane protein 52.2 31 0.0011 23.5 5.2 26 76-101 16-41 (140)
25 2jwk_A Protein TOLR; periplasm 51.4 30 0.001 21.2 4.7 40 81-125 35-74 (74)
26 2uz1_A Benzaldehyde lyase; thi 51.1 18 0.00062 30.7 4.6 42 78-129 6-47 (563)
27 4feg_A Pyruvate oxidase; carba 51.1 22 0.00074 30.7 5.2 43 77-129 12-56 (603)
28 1gcy_A Glucan 1,4-alpha-maltot 48.9 34 0.0012 28.9 6.0 60 67-127 21-110 (527)
29 1ud2_A Amylase, alpha-amylase; 48.7 23 0.00079 29.2 4.8 51 76-127 23-98 (480)
30 1ovm_A Indole-3-pyruvate decar 47.9 28 0.00095 29.3 5.2 42 78-129 7-49 (552)
31 1wpc_A Glucan 1,4-alpha-maltoh 47.5 25 0.00085 29.0 4.8 49 78-127 27-100 (485)
32 2x7j_A 2-succinyl-5-enolpyruvy 47.5 25 0.00084 30.3 4.9 47 73-129 28-75 (604)
33 3lq1_A 2-succinyl-5-enolpyruvy 47.4 34 0.0012 29.2 5.8 46 74-129 9-55 (578)
34 3bh4_A Alpha-amylase; calcium, 47.1 25 0.00087 29.0 4.8 49 78-127 23-96 (483)
35 1g94_A Alpha-amylase; beta-alp 46.7 27 0.00091 28.7 4.9 51 77-127 15-82 (448)
36 2wvg_A PDC, pyruvate decarboxy 46.4 25 0.00085 29.8 4.8 42 78-129 5-47 (568)
37 2vbf_A Branched-chain alpha-ke 46.0 31 0.001 29.3 5.2 43 77-129 26-69 (570)
38 2pr7_A Haloacid dehalogenase/e 45.3 17 0.00059 23.1 2.8 39 90-128 1-39 (137)
39 2vk8_A Pyruvate decarboxylase 44.9 23 0.00077 30.0 4.2 42 78-129 6-48 (563)
40 2vbi_A Pyruvate decarboxylase; 44.3 27 0.00093 29.6 4.7 42 78-129 5-47 (566)
41 3hww_A 2-succinyl-5-enolpyruvy 43.2 31 0.001 29.4 4.8 44 76-129 8-52 (556)
42 3llv_A Exopolyphosphatase-rela 43.1 49 0.0017 22.0 5.0 26 76-101 15-40 (141)
43 2z1k_A (NEO)pullulanase; hydro 42.6 29 0.001 28.4 4.5 49 78-127 52-114 (475)
44 3tev_A Glycosyl hyrolase, fami 42.6 17 0.00057 30.6 3.1 57 69-125 104-174 (351)
45 1ozh_A ALS, acetolactate synth 42.2 27 0.00093 29.7 4.4 43 77-129 12-54 (566)
46 1ea9_C Cyclomaltodextrinase; h 41.7 27 0.00092 30.0 4.3 49 78-127 174-236 (583)
47 1wzl_A Alpha-amylase II; pullu 41.1 29 0.001 29.7 4.4 49 78-127 175-237 (585)
48 1ybh_A Acetolactate synthase, 39.8 43 0.0015 28.6 5.2 43 77-129 13-56 (590)
49 1r30_A Biotin synthase; SAM ra 38.9 24 0.0008 28.2 3.3 47 80-126 159-210 (369)
50 3o3m_B Beta subunit 2-hydroxya 38.7 19 0.00065 29.8 2.8 46 77-122 330-375 (385)
51 1x8d_A Hypothetical protein YI 38.7 11 0.00038 26.7 1.2 30 96-125 8-39 (104)
52 2hqb_A Transcriptional activat 38.4 39 0.0013 25.7 4.3 42 80-131 171-212 (296)
53 2guy_A Alpha-amylase A; (beta- 37.5 42 0.0014 27.6 4.6 49 78-127 45-115 (478)
54 1lwj_A 4-alpha-glucanotransfer 36.7 46 0.0016 27.0 4.8 47 80-127 27-87 (441)
55 2pgn_A Cyclohexane-1,2-dione h 36.5 40 0.0014 28.9 4.5 42 78-129 6-49 (589)
56 1tv8_A MOAA, molybdenum cofact 36.3 33 0.0011 26.7 3.7 48 78-126 108-162 (340)
57 1j0h_A Neopullulanase; beta-al 36.1 43 0.0015 28.7 4.7 49 78-127 178-240 (588)
58 3l9w_A Glutathione-regulated p 35.4 48 0.0016 27.7 4.8 27 76-102 13-39 (413)
59 2kyz_A Heavy metal binding pro 33.4 68 0.0023 18.2 4.1 49 75-129 16-64 (67)
60 3czg_A Sucrose hydrolase; (alp 32.9 55 0.0019 28.8 4.9 49 78-127 108-173 (644)
61 2x41_A Beta-glucosidase; hydro 32.6 47 0.0016 30.1 4.5 56 69-124 90-158 (721)
62 4aie_A Glucan 1,6-alpha-glucos 32.5 45 0.0015 27.2 4.0 45 80-127 36-97 (549)
63 1ci4_A Protein (barrier-TO-aut 32.4 12 0.0004 27.1 0.5 28 70-97 18-45 (89)
64 3dhu_A Alpha-amylase; structur 32.4 48 0.0016 26.9 4.2 50 78-128 32-102 (449)
65 1ua7_A Alpha-amylase; beta-alp 32.2 55 0.0019 26.6 4.5 50 77-127 18-92 (422)
66 4g6c_A Beta-hexosaminidase 1; 31.8 31 0.001 29.0 3.0 53 73-125 107-172 (348)
67 2wc7_A Alpha amylase, catalyti 31.5 54 0.0018 27.0 4.4 49 78-127 58-120 (488)
68 3bmx_A Uncharacterized lipopro 31.5 34 0.0012 30.6 3.4 58 69-126 147-218 (642)
69 1jos_A RBFA, ribosome-binding 30.6 43 0.0015 24.2 3.3 46 73-122 73-118 (128)
70 1t9b_A Acetolactate synthase, 29.6 55 0.0019 29.1 4.4 43 77-129 83-126 (677)
71 3iix_A Biotin synthetase, puta 29.3 58 0.002 25.2 4.0 48 79-126 141-194 (348)
72 4gvf_A Beta-hexosaminidase; TI 29.0 30 0.001 29.1 2.5 58 68-125 86-159 (349)
73 3m07_A Putative alpha amylase; 28.9 52 0.0018 29.0 4.1 49 79-128 157-221 (618)
74 3pv8_A DNA polymerase I; DNA p 28.7 27 0.00094 31.1 2.3 48 71-128 166-213 (592)
75 2oxn_A Beta-hexosaminidase; TI 28.2 47 0.0016 27.7 3.5 55 70-125 87-156 (340)
76 1g5a_A Amylosucrase; glycosylt 27.9 60 0.0021 28.5 4.3 49 78-127 115-180 (628)
77 3s99_A Basic membrane lipoprot 27.6 70 0.0024 26.1 4.4 42 79-132 197-238 (356)
78 3abz_A Beta-glucosidase I; gly 27.3 45 0.0015 31.1 3.6 57 68-124 72-141 (845)
79 3tdn_A FLR symmetric alpha-bet 26.8 80 0.0027 23.6 4.3 45 81-129 39-85 (247)
80 1v5e_A Pyruvate oxidase; oxido 26.6 34 0.0012 29.4 2.4 42 78-129 6-49 (590)
81 3r2g_A Inosine 5'-monophosphat 25.9 84 0.0029 26.5 4.7 43 80-128 102-146 (361)
82 2whl_A Beta-mannanase, baman5; 25.9 69 0.0024 24.3 3.9 45 83-127 37-81 (294)
83 2pan_A Glyoxylate carboligase; 25.7 95 0.0032 26.6 5.1 61 77-147 28-100 (616)
84 4dfk_A DNA polymerase I, therm 25.2 18 0.00063 31.9 0.6 49 70-128 112-161 (540)
85 1ece_A Endocellulase E1; glyco 25.0 1.1E+02 0.0038 23.5 4.9 48 80-127 47-112 (358)
86 2zic_A Dextran glucosidase; TI 24.9 79 0.0027 26.8 4.4 47 80-127 35-96 (543)
87 3un7_A PBPA, penicillin-bindin 24.9 45 0.0015 28.1 2.8 22 24-48 129-150 (462)
88 1mxg_A Alpha amylase; hyperthe 24.8 87 0.003 25.7 4.5 49 78-127 30-104 (435)
89 4aio_A Limit dextrinase; hydro 24.3 80 0.0027 27.5 4.3 16 112-127 381-396 (884)
90 1q6z_A BFD, BFDC, benzoylforma 24.2 47 0.0016 27.7 2.8 41 78-129 4-44 (528)
91 4a17_W RPL31, 60S ribosomal pr 24.0 78 0.0027 23.4 3.7 36 73-108 27-65 (111)
92 2nxw_A Phenyl-3-pyruvate decar 23.9 85 0.0029 26.7 4.4 37 77-123 22-58 (565)
93 2qul_A D-tagatose 3-epimerase; 23.8 1.3E+02 0.0044 21.9 4.9 44 82-129 22-66 (290)
94 1pa4_A Probable ribosome-bindi 23.6 38 0.0013 24.0 1.8 45 73-121 68-112 (116)
95 4fn4_A Short chain dehydrogena 23.4 95 0.0033 24.3 4.3 43 74-125 15-57 (254)
96 2fb6_A Conserved hypothetical 23.4 87 0.003 21.9 3.7 57 71-127 18-75 (117)
97 1ud2_A Amylase, alpha-amylase; 23.3 1.4E+02 0.005 24.4 5.5 57 68-129 202-261 (480)
98 3zyz_A Beta-D-glucoside glucoh 23.1 58 0.002 29.7 3.4 58 68-125 83-154 (713)
99 2pfu_A Biopolymer transport EX 23.1 87 0.003 20.2 3.5 32 92-128 58-89 (99)
100 1mp9_A Tata-binding protein; t 22.5 1.8E+02 0.0061 22.7 5.7 44 7-57 42-85 (198)
101 3bc9_A AMYB, alpha amylase, ca 22.5 96 0.0033 27.1 4.5 49 78-127 152-226 (599)
102 1fa2_A Beta-amylase; TIM barre 22.4 92 0.0031 28.3 4.5 44 84-127 41-88 (498)
103 1wdp_A Beta-amylase; (beta/alp 22.3 92 0.0031 28.3 4.5 45 84-128 40-88 (495)
104 1jcn_A Inosine monophosphate d 22.2 87 0.003 26.5 4.1 42 81-128 258-301 (514)
105 3sx2_A Putative 3-ketoacyl-(ac 21.8 1.2E+02 0.0041 22.4 4.4 50 74-123 21-73 (278)
106 1ais_A TBP, protein (tata-bind 21.7 1.6E+02 0.0056 22.5 5.3 43 8-57 39-81 (182)
107 2bhu_A Maltooligosyltrehalose 21.7 1E+02 0.0036 26.8 4.6 47 80-127 148-210 (602)
108 2qlw_A RHAU; mutarotase, isome 21.5 23 0.00077 27.1 0.3 32 94-125 46-79 (144)
109 4hb7_A Dihydropteroate synthas 21.3 63 0.0022 26.7 3.0 48 69-127 26-85 (270)
110 3l4b_C TRKA K+ channel protien 21.2 70 0.0024 23.1 2.9 27 76-102 9-35 (218)
111 4a4j_A Pacszia, cation-transpo 21.2 1.3E+02 0.0043 17.2 4.7 39 88-126 27-66 (69)
112 3edf_A FSPCMD, cyclomaltodextr 20.7 1.2E+02 0.0041 26.1 4.7 49 78-127 150-216 (601)
113 1vk9_A Conserved hypothetical 20.5 87 0.003 24.2 3.5 64 69-144 61-125 (151)
114 1cc8_A Protein (metallochapero 20.4 1.4E+02 0.0048 17.4 4.2 39 88-127 29-68 (73)
115 1jae_A Alpha-amylase; glycosid 20.3 93 0.0032 25.7 3.8 50 78-127 24-92 (471)
116 1kwg_A Beta-galactosidase; TIM 20.2 1E+02 0.0035 26.8 4.2 46 83-128 20-69 (645)
117 3qlj_A Short chain dehydrogena 20.2 1.7E+02 0.0058 22.4 5.1 50 74-123 35-85 (322)
No 1
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=99.87 E-value=5.3e-22 Score=147.87 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=89.8
Q ss_pred CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcc
Q 031877 13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGID 92 (151)
Q Consensus 13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~ 92 (151)
.+|=|.+|.||++|+|||+|. .++.++|+|||.|.+++..+. ..+|..||..||+.||+|+++.||+
T Consensus 21 ~rpRL~V~rSnkhIyAQiidd---~~g~tlasAST~e~~~~~~~~----------~~~n~~AA~~vG~llA~Ral~~GI~ 87 (116)
T 3r8s_O 21 GATRLVVHRTPRHIYAQVIAP---NGSEVLVAASTVEKAIAEQLK----------YTGNKDAAAAVGKAVAERALEKGIK 87 (116)
T ss_dssp TCCEEEEEECSSCEEEEEECT---TSSCEEEECCSSSHHHHTTCS----------CSSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEEeCCEEEEEEEEc---CCCeEEEEEeeCchhhccccC----------CCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 578899999999999999999 999999999999999998876 5689999999999999999999999
Q ss_pred eeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877 93 NVMINLAEELSRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 93 ~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk 125 (151)
.|.+|.. ++.||++|+||.|++|++|++
T Consensus 88 ~vvfDrg-----g~~yhGrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 88 DVSFDRS-----GFQYHGRVQALADAAREAGLQ 115 (116)
T ss_dssp CCEEECT-----TSCSSSHHHHHHHHHHHTTCC
T ss_pred EEEEecC-----CCcccHHHHHHHHHHHHhCCC
Confidence 9999976 889999999999999999986
No 2
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.83 E-value=3.9e-21 Score=151.43 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=90.0
Q ss_pred ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877 14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN 93 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~ 93 (151)
+.-|.+|.|||+|+|||+|. .++.++++|||.|++|+..+. |+.. .|..||..||+.||+|+++.||+.
T Consensus 65 rPRL~V~rSnkhIyAQvIdd---~~g~tLasASTlek~lk~~l~-----~g~~---~n~~AA~~VG~liAeRA~e~GI~~ 133 (161)
T 3bbo_Q 65 RPRLCVFRSNKHLYVQVIDD---SKMHTLASASTMQKSISEELD-----YSSS---PTIEVAKKVGEVIASACLEKGITK 133 (161)
T ss_dssp CCCCEEEECSSCEEEEEECC---TTSCEEEEEEHHHHHHHHCCT-----TCCS---SSHHHHHHHHHHSSSHHHHTSSCC
T ss_pred CCEEEEEecCCeEEEEEEEC---CCCEEEEEEeCCcHHHHhhcc-----ccCC---CCHHHHHHHHHHHHHHHHHCCCCE
Confidence 45699999999999999999 999999999999999998887 5444 899999999999999999999999
Q ss_pred eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877 94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
|.+|.. +++||++|+||.|++|++|++.
T Consensus 134 VvFDRg-----g~~YhGRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 134 VAFDRG-----GYPYHGRVKALADAAREKGLQF 161 (161)
T ss_dssp CCCCCS-----SSCSSSTTHHHHHHHTTTTCCC
T ss_pred EEEeCC-----CCcchHHHHHHHHHHHHhCCcC
Confidence 999976 8999999999999999999863
No 3
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.82 E-value=2.7e-20 Score=139.87 Aligned_cols=95 Identities=24% Similarity=0.229 Sum_probs=87.1
Q ss_pred cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877 12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI 91 (151)
Q Consensus 12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi 91 (151)
..+|-|.+|.||++|+|||+|. .++.++|+|||.|.+++ +. +..|..||..||+.||+|+++.||
T Consensus 26 ~~rpRL~V~rSnkhIyAQiidd---~~~~tl~sAsT~e~~~~--~~----------~~~n~~AA~~vG~llA~Ral~~GI 90 (120)
T 1ovy_A 26 TERPRLSVFRSNKHIYAQIIDD---TKSATIVSASTLDKEFG--LD----------STNNIEAAKKVGELVAKRALEKGI 90 (120)
T ss_dssp SSCCSEEEEEETTEEEEEEECC---SSCCCEEEESTTSTTTC--SS----------CTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEEeCCeEEEEEEEc---CCCEEEEEEecCchhhC--cC----------CCCcHHHHHHHHHHHHHHHHHCCC
Confidence 4467899999999999999999 99999999999999976 33 458999999999999999999999
Q ss_pred ceeEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877 92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
+.|.+|.. +++||++|+++.+.+|+.|++.
T Consensus 91 ~~vvfDrg-----g~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 91 KQVVFDRG-----GYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp SCCCCCST-----TCSSCSSTHHHHHHHHHHHCCC
T ss_pred CEEEEecC-----CccccHHHHHHHHHHHHhCCcC
Confidence 99999976 8899999999999999999863
No 4
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.81 E-value=5e-20 Score=137.41 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=84.4
Q ss_pred ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877 14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN 93 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~ 93 (151)
++-|.+|.||++|+|||+|. .++.++|+|||.|.+++ ..|..||..||+.||+|+++.||+.
T Consensus 23 rpRL~V~rSnkhiyAQiidd---~~~~tlasAsT~e~~~k---------------~~n~~AA~~vG~llA~ra~~~GI~~ 84 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDD---EKGVTLVSASSLALKLK---------------GNKTEVARQVGRALAEKALALGIKQ 84 (112)
T ss_dssp CCEEEEEECSSCEEEEEEET---TTTEEEEEEETTTTTCC---------------CCHHHHHHHHHHHHHHHHHTTTCCB
T ss_pred CCEEEEEEeCCeEEEEEEec---CCCeEEEEEEecchhcc---------------CCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 77899999999999999999 99999999999999862 3799999999999999999999999
Q ss_pred eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877 94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
|.+|.. ++.||++|++|.|++|++|++.
T Consensus 85 vvfDrg-----g~~yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 85 VAFDRG-----PYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp CEEECT-----TSCSCSSTTHHHHHHHHTTCBC
T ss_pred EEEecC-----CCcccHHHHHHHHHHHHcCCCC
Confidence 999976 9999999999999999999863
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.76 E-value=2.6e-19 Score=133.90 Aligned_cols=89 Identities=27% Similarity=0.309 Sum_probs=80.4
Q ss_pred ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877 14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN 93 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~ 93 (151)
++-|.+|.|||+|+|||+|. .++.++|+|||.| | . +..|..||..||+.||+|+++.||+.
T Consensus 26 rpRL~V~rSnkhIyAQiidd---~~~~tl~sAST~e--l----~----------~~~n~~AA~~vG~llA~Ral~~GI~~ 86 (114)
T 2zjr_L 26 RLRLSVYRSSKHIYAQIIDD---SRGQTLAAASSAA--L----K----------SGNKTDTAAAVGKALAAAAAEKGIKQ 86 (114)
T ss_dssp SEEECCCTTSSCCCCCEEET---TTTEECCCCCSCS--C----C----------TTCSSSSHHHHHHHHHHHHHTTCCCC
T ss_pred CCEEEEEEeCCeEEEEEEEc---CCCEEEEEEEchH--h----c----------CCCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 56799999999999999999 9999999999999 4 1 34899999999999999999999999
Q ss_pred eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877 94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
|.+|.. +++||++|+++.+.+|+.|+++
T Consensus 87 vvfDrg-----g~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 87 VVFDRG-----SYKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp CEECCC-----SSCSCSHHHHHHHHHHHHC---
T ss_pred EEEecC-----CccccHHHHHHHHHHHHhCCcC
Confidence 999976 8999999999999999999874
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=99.73 E-value=1.4e-17 Score=133.31 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=89.5
Q ss_pred ceeeEEEEeeceeEEEee--cCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877 14 RYLLQLILSCRKITAQVS--DTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI 91 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv--~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi 91 (151)
+|-|.+|.|||+|+|||+ |. ..+.++|+|||.|.+ +..+. . +..|..||..||++||.|+++.||
T Consensus 32 rpRL~V~rSnkhIyAQII~~dd---~~~~tlasAsT~e~~-k~~~k-----~----~~~N~~AA~~vG~llA~Ral~kGI 98 (187)
T 1vq8_N 32 KPRLVARKSNKHVRAQLVTLGP---NGDDTLASAHSSDLA-EYGWE-----A----PTGNMPSAYLTGLLAGLRAQEAGV 98 (187)
T ss_dssp SCEEEEEECSSCEEEEEEECCT---TSCEEEEEEESGGGG-GGTCC-----S----CSSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCcEEEEEEEecC---CCCEEEEEEEccchh-ccccc-----c----CCCcHHHHHHHHHHHHHHHHHCCC
Confidence 578999999999999999 99 999999999999999 65553 1 358999999999999999999999
Q ss_pred ceeEeechhhcccccccc--chhhHHHHHHHHcCeeeeccc
Q 031877 92 DNVMINLAEELSRPANQR--IMVLPLFDSVRRAGVVVDGLE 130 (151)
Q Consensus 92 ~~V~id~~eE~sr~~kyr--~kV~al~dSlR~~GVkv~g~~ 130 (151)
+.|.+|.. +++|| ++|+++.+.+|+.|+++---+
T Consensus 99 ~~vvfDrg-----g~~yh~GgRV~Ala~gAre~GL~fph~~ 134 (187)
T 1vq8_N 99 EEAVLDIG-----LNSPTPGSKVFAIQEGAIDAGLDIPHND 134 (187)
T ss_dssp CBCEEECT-----TSCCCTTCHHHHHHHHHHHTTCBCCCCG
T ss_pred CEEEEcCC-----CceeccchHHHHHHHHhhcCCEeccCCC
Confidence 99999987 89999 999999999999999976544
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.67 E-value=5.8e-17 Score=131.30 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=86.3
Q ss_pred ceeeEEEEeeceeEEEeec--CCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877 14 RYLLQLILSCRKITAQVSD--TASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI 91 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv~--~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi 91 (151)
+|-|-+|.|||+|+|||+| . ..+.++|+|||.|.+++-... ....|..||..||++||.|+++.||
T Consensus 32 kpRL~V~rSnkhIyAQIId~d~---~g~~tLasAST~El~lk~g~~---------~~~~N~~AA~~vG~llA~Ral~kGI 99 (203)
T 3j21_O 32 KPRLVVRKSLNHHIAQIIVYDP---KGDRTLVSAHTRELIRDFGWK---------GHCGNTPSAYLLGLLIGYKAKQAGI 99 (203)
T ss_dssp CCEEEEEECSSCEEEEEEECCT---TSCEEEEEECSTTTSSSSSCC---------SCTTSHHHHHHHHHHSSSSTTSSCC
T ss_pred CCEEEEEEeCCeEEEEEEEecC---CCCeEEEEEEccchhhhhccc---------CCCCcHHHHHHHHHHHHHHHHhCCC
Confidence 6789999999999999998 5 678999999999977532221 2457999999999999999999999
Q ss_pred ceeEeechhhccccccc--cchhhHHHHHHHHcCeeeecc
Q 031877 92 DNVMINLAEELSRPANQ--RIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 92 ~~V~id~~eE~sr~~ky--r~kV~al~dSlR~~GVkv~g~ 129 (151)
+.|.+|.. ++.| |++|+++.+..|+.|+++---
T Consensus 100 ~~vvfDrg-----g~~y~~hgRV~Ala~gAre~GL~iPhs 134 (203)
T 3j21_O 100 EEAILDIG-----LHPPVRGSSVFAVLKGAVDAGLNVPHS 134 (203)
T ss_dssp CCCEEECC-----SSCCCTTSHHHHHHHHHHHHTCCCCCC
T ss_pred CEEEEecC-----cceeccCcchhhhhhhcccCCeecccC
Confidence 99999986 8888 799999999999999988544
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.31 E-value=1.5e-11 Score=104.71 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=85.9
Q ss_pred CceeeEEEEeeceeEEEeecCCCCC--CceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc-
Q 031877 13 PRYLLQLILSCRKITAQVSDTASAG--SSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI- 89 (151)
Q Consensus 13 ~~yvLrL~lS~k~ITAqVv~~~~~~--tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~- 89 (151)
++|=|-.++||+.|.|||++. . .+.|+|+|||.|.+ +-.+. ....|..||..+|..||.|++..
T Consensus 47 ~kpRLvVrrSNk~I~aQII~~---~~~gd~tLasAsS~El~-kyg~k---------~g~tN~aAAy~tGlLlArRal~k~ 113 (297)
T 2zkr_n 47 PKYRMIVRVTNRDIICQIAYA---RIEGDMIVCARYAHELP-KYGVK---------VGLTNYAAAYCTGLLLARRLLNRF 113 (297)
T ss_dssp CSEEEEEEEETTEEEEEEEEC---CSSSCEEEEEEEGGGGG-GTCCC---------SCSSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCceEEEEEecCcEEEEEEec---cCCCCEEEEEeecCccc-ccccc---------cCCCcHHHHHHHHHHHHHHHHHhh
Confidence 377888999999999999997 5 89999999999988 43333 13478999999999999999998
Q ss_pred --------------------------CcceeEeechhhccccccc--cchhhHHHHHHHHcCeeeeccc
Q 031877 90 --------------------------GIDNVMINLAEELSRPANQ--RIMVLPLFDSVRRAGVVVDGLE 130 (151)
Q Consensus 90 --------------------------Gi~~V~id~~eE~sr~~ky--r~kV~al~dSlR~~GVkv~g~~ 130 (151)
|+..|-+|.. +..| +++|.++.+..++.|+++---+
T Consensus 114 ~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrG-----l~ryttggRVfa~akGArDgGL~~Phs~ 177 (297)
T 2zkr_n 114 GMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAG-----LARTTTGNKVFGALKGAVDGGLSIPHST 177 (297)
T ss_dssp SCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECT-----TSCCCTTCHHHHHHHHHHHTTCBCCCCG
T ss_pred ccchhhcCccccccccccccccccCCCceEEEEecC-----CcccCCCchHHHHHHHHHhcCcccCCCC
Confidence 7888888887 7889 9999999999999999875444
No 9
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.02 E-value=1.8e-09 Score=92.06 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=78.9
Q ss_pred ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc----
Q 031877 14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI---- 89 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~---- 89 (151)
+|=|-.+.||+.|.|||++. ....+.|+|+|||.|.+.+. +. +...|..||..||+.||.|++..
T Consensus 48 kpRLvV~rSNrhIyAQIIdd-~~~Gd~tLaSASS~El~k~g-~k---------~~~~N~~AAy~vG~LiAeRAl~k~~ld 116 (297)
T 3u5e_D 48 KYRLVVRFTNKDIICQIISS-TITGDVVLAAAYSHELPRYG-IT---------HGLTNWAAAYATGLLIARRTLQKLGLD 116 (297)
T ss_dssp CCEEEEEEETTEEEEEEEEC-CTTCCEEEEEEEGGGGGGGT-CC---------SCTTSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CceEEEEEcCCeEEEEEeec-CCCCCEEEEEEeecchhhcc-cC---------CCCCcHHHHHHHHHHHHHHHHHhhCCc
Confidence 77788899999999999997 11356999999999987432 21 24479999999999999999998
Q ss_pred ----CcceeE-----eechhhcccccc---------c--cchhhHHHHHHHHcCeeeec
Q 031877 90 ----GIDNVM-----INLAEELSRPAN---------Q--RIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 90 ----Gi~~V~-----id~~eE~sr~~k---------y--r~kV~al~dSlR~~GVkv~g 128 (151)
|+.+|. ++--++..+||+ + +.+|.+++......|+.|--
T Consensus 117 ~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVfaalKGA~DgGL~IPh 175 (297)
T 3u5e_D 117 ETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPH 175 (297)
T ss_dssp SSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHHHHHHHHHHHTCBCCC
T ss_pred ccccCccccccceeccccccCCCCceeEEEecCCCccCccceehhhhhcccccCcccCC
Confidence 776532 111123345553 3 66999999999999998743
No 10
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.02 E-value=1.6e-09 Score=92.54 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=79.5
Q ss_pred CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc---
Q 031877 13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI--- 89 (151)
Q Consensus 13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~--- 89 (151)
++|=|-.|.||++|.|||+|. ....+.|+|+|||.|.+.+.. . +...|..||..||+.||.|++..
T Consensus 47 pkpRLvV~rSNrhIyAQIIdd-~~~Gd~tLaSASS~El~~~g~-k---------~~~~N~~AAy~vG~LiAeRAl~k~~~ 115 (301)
T 4a17_M 47 PKYRLVARATNTRIIAQIVYA-TLKCDRVLCAADSYELKRFGV-S---------TGLASYAAAYATGLLLARRLLKQIGL 115 (301)
T ss_dssp CCEEEEEEECSSCEEEEEEEE-CSSCEEEEEEEETTHHHHTTC-C---------SCTTSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEcCCeEEEEEeec-CCCCCEEEEEEeeccchhccc-c---------CCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 377788899999999999996 113559999999999985331 1 24579999999999999999999
Q ss_pred -----CcceeE-----eechhhcccccc---------c--cchhhHHHHHHHHcCeeeec
Q 031877 90 -----GIDNVM-----INLAEELSRPAN---------Q--RIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 90 -----Gi~~V~-----id~~eE~sr~~k---------y--r~kV~al~dSlR~~GVkv~g 128 (151)
|+.+|. ++-.++..+||+ + +.+|.+++......|+.|--
T Consensus 116 d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVfaalKGA~DgGL~IPh 175 (301)
T 4a17_M 116 DTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINIPH 175 (301)
T ss_dssp TTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHHHHHHHHHHTTCBCCC
T ss_pred cccccCccccccceeecccccCCCCceEEEEecCCcccCcccchhhhhhcccccCcccCC
Confidence 877432 112123355553 3 66999999999999997743
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=98.74 E-value=8.1e-09 Score=88.33 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=73.3
Q ss_pred EEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc--------
Q 031877 18 QLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI-------- 89 (151)
Q Consensus 18 rL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~-------- 89 (151)
||+ |||.|.|||++. ....+.|+|+|||.|.+.+. +. +...|..||..||..||.|++..
T Consensus 54 RLV-SNrhIyaQII~~-~i~GD~tLaSAsS~EL~kyG-~k---------~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~ 121 (304)
T 3iz5_Q 54 RFV-TNKDITAQIVYA-TIAGDIVMAAAYSHELPRYG-LE---------VGLTNYAAAYCTGLLLARRVLTLRGLDQEYE 121 (304)
T ss_dssp SSS-CSSCCEEEEEEE-ETTEEEEEEEEETTTGGGGS-CC---------SCTTSHHHHHHHHHHHHHHHHTTCSSCCCCC
T ss_pred eee-cCCcEEEEEEec-CCCCCEEEEEEecCchhhcc-cC---------CCCCcHHHHHHHHHHHHHHHHHhhCCccccC
Confidence 555 999999999996 11245899999999988543 32 24579999999999999999999
Q ss_pred CcceeE-----eechhhcccccc---------cc--chhhHHHHHHHHcCeeeec
Q 031877 90 GIDNVM-----INLAEELSRPAN---------QR--IMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 90 Gi~~V~-----id~~eE~sr~~k---------yr--~kV~al~dSlR~~GVkv~g 128 (151)
|+.+|. ++. ++..+||+ +. .+|.+++......|+.|--
T Consensus 122 G~~e~~g~~~~ve~-~~~~~~f~~~LDiGL~rtttG~RVfaalKGA~DgGL~IPh 175 (304)
T 3iz5_Q 122 GNVEATGEDYYVEP-ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPH 175 (304)
T ss_dssp SSSCCCSCCCSSCC-SSCSCCCSCEEECTTCCCCSSCHHHHHHHHHHTTTCCCCC
T ss_pred Cccccccceecccc-cCCCCCceEEEecCCcccccCceeEEeeccccccCcccCC
Confidence 877522 122 22344443 44 6999999999999997643
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=96.30 E-value=0.037 Score=41.60 Aligned_cols=99 Identities=8% Similarity=0.083 Sum_probs=79.4
Q ss_pred cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877 12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI 91 (151)
Q Consensus 12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi 91 (151)
+..+++-.+.|-.-+-..|+|. +|.+++.+|+----|+..-+ .-.-||-..+|..+..+++.|+
T Consensus 14 ~~~gi~hI~as~NNTivtiTd~----~G~~~~~~SaG~~gfKg~rk------------~tp~AA~~aa~~~~~~~~~~Gi 77 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITDP----DGNPITWSSGGVIGYKGSRK------------GTPYAAQLAALDAAKKAMAYGM 77 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEECT----TSCEEEECCTTTTTCCSGGG------------GSHHHHHHHHHHHHHHHHTTTC
T ss_pred ccceEEEEEecCCCEEEEEEcC----CCCEEEEEeccceeEcCCCc------------CCHHHHHHHHHHHHHHHHHhCC
Confidence 3458899999999999999998 67888888887667887766 6678999999999999999999
Q ss_pred ceeEeechhhccccccccchhhHHHHHHHHcCeeeecccccc
Q 031877 92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLA 133 (151)
Q Consensus 92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~ 133 (151)
..|+|-++ -|=.-| .+.+.+|...|++|.-.+..-
T Consensus 78 ~~v~V~vk----G~G~Gr---e~airaL~~~Gl~I~~I~DvT 112 (129)
T 2vqe_K 78 QSVDVIVR----GTGAGR---EQAIRALQASGLQVKSIVDDT 112 (129)
T ss_dssp CEEEEEEE----SCCTTH---HHHHHHHHTSSSEEEECEECC
T ss_pred eEEEEEEE----CCCCCH---HHHHHHHHHCCCEEEEEEEcC
Confidence 99999987 333222 378999999999876554433
No 13
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.17 E-value=0.056 Score=41.26 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCCcccccCcccCceeeEEEEeeceeEEEeecCCCCCCc-eEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHH
Q 031877 1 MSSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSS-TIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVG 79 (151)
Q Consensus 1 ~~~~~~~~~~~~~~yvLrL~lS~k~ITAqVv~~~~~~ts-tIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VG 79 (151)
||-....-.+|-...++-.+.|-.-.-..|+|. +| .+++-+|.--.-|+..-+ .-.-||-..+
T Consensus 1 ~~~~~~~~~~~~~~gi~hI~asfNNTivtiTD~----~G~~~i~~~S~G~~gfkg~~k------------sTp~AA~~aa 64 (137)
T 3j20_M 1 MSEEQVNIKKKEKWGIAHIYSSFNNTIIHITDI----TGAETISRWSGGMVVKADRDE------------PSPYAAMLAA 64 (137)
T ss_dssp ----CCCCSSCCEEEEEEEEECSSCEEEEEEES----SSCSEEEEEEGGGTCSCTTTS------------SSHHHHHHHH
T ss_pred CccchhhhccCCcceEEEEEcCCCCEEEEEEcC----CCCEEEEEEccceeeecCCcc------------CCHHHHHHHH
Confidence 444444444555688898999988888999998 55 588888877777776666 4566888889
Q ss_pred HHHHHHHHhcCcceeEeechhhccccccccch-----hhHHHHHHHHcCeeeeccccccc
Q 031877 80 QKLGSQLREIGIDNVMINLAEELSRPANQRIM-----VLPLFDSVRRAGVVVDGLEKLAE 134 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~sr~~kyr~k-----V~al~dSlR~~GVkv~g~~~l~~ 134 (151)
|..+.++++.|+..|+|-++ -|=-+++| =.+.+.+|.+.|++|.-.+..-.
T Consensus 65 ~~~~~~a~e~Gi~~v~V~vk----G~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTp 120 (137)
T 3j20_M 65 RRAAEEALEKGIVGVHIRVR----APGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTP 120 (137)
T ss_dssp HHHHHHHHHHTEEEEEEEEE----CCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHHHHHHcCCeEEEEEEE----CCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCC
Confidence 99999999999999999997 32222211 24578889999998875554433
No 14
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=95.76 E-value=0.03 Score=42.87 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=78.9
Q ss_pred cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877 12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI 91 (151)
Q Consensus 12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi 91 (151)
+..+++-++.|-.-+-..|+|. +|.+++.+|+----|+..-+ .-.-||-..+|..+..+++.|+
T Consensus 27 ~~~gi~hI~as~NNTivtiTD~----~G~~i~~~SaG~~GfKg~rk------------sTp~AA~~aa~~~~~~a~e~Gi 90 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTDV----RGRVVSWASAGTCGFRGTKR------------GTPFAAQTAAGNAIRTVVEQGM 90 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEECS----SSCEEEEEETTTSSCCTTSC------------SSHHHHHHHHTSGGGTSTTTCC
T ss_pred ceeeEEEEEecCCCEEEEEEcC----CCCEEEEEeccceeEccccc------------CCHHHHHHHHHHHHHHHHHhCC
Confidence 4468999999999999999998 67888888876666777755 5678999999999999999999
Q ss_pred ceeEeechhhccccccccchhhHHHHHHHHcCeeeeccccc
Q 031877 92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132 (151)
Q Consensus 92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l 132 (151)
..|+|-++ -|=.-|. +.+.+|.+.|++|.-.+..
T Consensus 91 ~~v~V~vk----G~G~GRe---aairaL~~~Gl~I~~I~Dv 124 (140)
T 3bbn_K 91 QRAEVMIK----GPGLGRD---AALRAIRRSGILLSFVRDV 124 (140)
T ss_dssp CEEEEEEE----SCSTTSS---HHHHHHHTTTCEEEEEEEC
T ss_pred eEEEEEEE----CCCCcHH---HHHHHHHHCCCEEEEEEEc
Confidence 99999987 4433333 7899999999987654443
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=95.73 E-value=0.076 Score=39.27 Aligned_cols=96 Identities=14% Similarity=0.240 Sum_probs=74.1
Q ss_pred ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877 14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN 93 (151)
Q Consensus 14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~ 93 (151)
..++-.+.|-...-..|+|. +|.+++.+|+--.-|+..-+ .-.-||-..+|..+.++++.|+..
T Consensus 6 ~gi~hI~as~NNTivtiTD~----~G~~i~~~S~G~~gfKg~rk------------~tp~AA~~aa~~~~~~~~~~Gi~~ 69 (117)
T 3r8n_K 6 DGVAHIHASFNNTIVTITDR----QGNALGWATAGGSGFRGSRK------------STPFAAQVAAERCADAVKEYGIKN 69 (117)
T ss_dssp EEEEEEEECSSCEEEEEECT----TSCCSEEEETGGGSCCGGGG------------SSHHHHHHHHHHHHHHHTTSCCCE
T ss_pred eeEEEEEcccCCEEEEEEcC----CCCEEEEEcCCccccCCCcc------------CCHHHHHHHHHHHHHHHHHhCCcE
Confidence 35677777877888889998 56677888877667888777 567788999999999999999999
Q ss_pred eEeechhhccccccccchhhHHHHHHHHcCeeeeccccc
Q 031877 94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132 (151)
Q Consensus 94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l 132 (151)
|+|-++ -|=.-|. +.+.+|.+.|+++.-.+..
T Consensus 70 v~v~vk----G~G~Gr~---~airaL~~~Gl~I~~I~Dv 101 (117)
T 3r8n_K 70 LEVMVK----GPGPGRE---STIRALNAAGFRITNITDV 101 (117)
T ss_dssp EEEEEE----CSSSSTT---HHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEe----CCCccHH---HHHHHHHhCCCEEEEEEEe
Confidence 999996 3333333 5777888999987654443
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=92.92 E-value=0.68 Score=35.83 Aligned_cols=102 Identities=9% Similarity=0.108 Sum_probs=69.7
Q ss_pred CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcc
Q 031877 13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGID 92 (151)
Q Consensus 13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~ 92 (151)
...++-++.|-.-+-..|+|. .-..+++.+|....-+.+.-+ .-.-||-..+|..+.++++.||.
T Consensus 27 ~~gi~hI~asfNNTiVtiTD~---~G~~~~~~ssgg~~~k~~r~k------------sTpyAAq~aa~~~a~~a~e~Gi~ 91 (151)
T 2xzm_K 27 VFGVCHIMATWNDTFIHVTDL---SGRETLVRVTGGMKVKADREE------------SSPYAAMQAAIDVVNRCKELKIN 91 (151)
T ss_dssp CEEEEEEEBCSSCBCCEEECT---TCCSEEEECCHHHHCSSGGGG------------SCHHHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEEccCCCEEEEEECC---CCCEEEEEecCcceEeCCCCc------------CCHHHHHHHHHHHHHHHHHcCCe
Confidence 357788888888888889998 333355554444433333334 44668888899999999999999
Q ss_pred eeEeechhhcccccccc-----chhhHHHHHHHHcCeeeecccccc
Q 031877 93 NVMINLAEELSRPANQR-----IMVLPLFDSVRRAGVVVDGLEKLA 133 (151)
Q Consensus 93 ~V~id~~eE~sr~~kyr-----~kV~al~dSlR~~GVkv~g~~~l~ 133 (151)
.|+|-++ -+=-++ --=.+.+.+|.+.|+++.-.+..-
T Consensus 92 ~v~V~vk----G~gg~~~kgpG~GresairaL~~~GlkI~~I~DvT 133 (151)
T 2xzm_K 92 ALHIKLR----AKGGVETKQPGPGAQSALRALARSGMKIGRIEDVT 133 (151)
T ss_dssp EEEEEEE----CCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECC
T ss_pred EEEEEEE----cCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeC
Confidence 9999986 221111 113578899999999876554443
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=90.01 E-value=0.95 Score=34.44 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=69.9
Q ss_pred ccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhc-cccCCCCCCCCcccchhHHHHHHHHHHHHHHhc
Q 031877 11 KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHY-HSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI 89 (151)
Q Consensus 11 ~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~-e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~ 89 (151)
+....++-.+.|-.-.-..|+|. +|..+..+||--.-|+..- + .-.-||-..+|..+.++++.
T Consensus 11 ~~~~gi~hI~asfNNTivtvTD~----~G~~~~~~ssG~~gfKg~r~k------------sTpyAAq~aa~~~a~~a~e~ 74 (137)
T 3u5c_O 11 SQVFGVARIYASFNDTFVHVTDL----SGKETIARVTGGMKVKADRDE------------SSPYAAMLAAQDVAAKCKEV 74 (137)
T ss_dssp CCCEEECCEEEETTEEEECCEET----TSSSCCCCCBTTTTSCCSTTT------------TCHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEEEEccCCCEEEEEEcC----CCCEEEEEeCCCcEEeCCccc------------CCHHHHHHHHHHHHHHHHHc
Confidence 34566777788888888889998 5555555555444565544 3 34568888899999999999
Q ss_pred CcceeEeechh--hc-cccccccchhhHHHHHHHHcCeeeecccccc
Q 031877 90 GIDNVMINLAE--EL-SRPANQRIMVLPLFDSVRRAGVVVDGLEKLA 133 (151)
Q Consensus 90 Gi~~V~id~~e--E~-sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~ 133 (151)
|+..|+|-+.- .- .++.-. -=.+.+.+|.+.|+++.-.+..-
T Consensus 75 Gi~~v~V~vra~gg~~~kgpG~--Gr~sairaL~~~Gl~I~~I~DvT 119 (137)
T 3u5c_O 75 GITAVHVKIRATGGTRTKTPGP--GGQAALRALARSGLRIGRIEDVT 119 (137)
T ss_dssp TCCEEECEEECSCTTSCCSCCG--GGHHHHHHHHTTTCEECCCEECC
T ss_pred CCeEEEEEEeccCCCcccCCCc--chHHHHHHHHhCCCEEEEEEEcC
Confidence 99999998830 00 012111 12457888899999886555443
No 18
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=76.35 E-value=4.5 Score=32.96 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=41.0
Q ss_pred cc-cchhH-----HHHHHHHHHHHHHhcCcceeEeechhhccccccc---------------cchhhHHHHHHHHcCeee
Q 031877 68 RF-WDSNT-----VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQ---------------RIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 68 ~~-~Daka-----Aa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~ky---------------r~kV~al~dSlR~~GVkv 126 (151)
.| ||+.. =.-|-++|- .|++.|++.|++.+--|-...-.| ..-++.|++.+.++||+|
T Consensus 7 ~F~~d~~~d~~G~~~gi~~~ld-yl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~V 85 (405)
T 1ht6_A 7 GFNWESWKQSGGWYNMMMGKVD-DIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQA 85 (405)
T ss_dssp CCCTTGGGCTTCHHHHHHTTHH-HHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred eEEcCCCCCCCcCHHHHHHHHH-HHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEE
Confidence 46 87654 345557784 999999999998764333111111 123789999999999998
Q ss_pred ec
Q 031877 127 DG 128 (151)
Q Consensus 127 ~g 128 (151)
+-
T Consensus 86 il 87 (405)
T 1ht6_A 86 IA 87 (405)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 19
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=60.32 E-value=12 Score=31.69 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
.+++.|..+|+..||+.|-.-.- ..+.+|+|+|.+. +++.++.
T Consensus 4 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~dal~~~~~i~~i~~ 47 (549)
T 3eya_A 4 TVAAYIAKTLESAGVKRIWGVTG----------DSLNGLSDSLNRMGTIEWMST 47 (549)
T ss_dssp BHHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHHHHHHCSSEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEEEcCC----------CchHHHHHHHHhcCCCeEEEe
Confidence 37899999999999999887765 5689999999987 7888775
No 20
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=58.28 E-value=14 Score=31.43 Aligned_cols=43 Identities=16% Similarity=0.000 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~ 129 (151)
.+++.|..+|+..||+.|-.-.- ..+.+++|++.+.||+.+..
T Consensus 11 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~i~~i~~ 53 (568)
T 2c31_A 11 DGFHVLIDALKMNDIDTMYGVVG----------IPITNLARMWQDDGQRFYSF 53 (568)
T ss_dssp EHHHHHHHHHHHTTCCEEEECCC----------TTTHHHHHHHHHTTCEEEEC
T ss_pred cHHHHHHHHHHHcCCCEEEEeCC----------CccHHHHHHHHhCCCcEEEe
Confidence 47899999999999999887665 57899999998888888765
No 21
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=57.74 E-value=14 Score=31.21 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- ..+.+++|++.+.|++.+..
T Consensus 10 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~i~~i~~ 51 (564)
T 2q28_A 10 GMHIIVEALKQNNIDTIYGVVG----------IPVTDMARHAQAEGIRYIGF 51 (564)
T ss_dssp HHHHHHHHHHHTTCCEEEECCC----------TTTHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCC----------cchHHHHHHHHhCCCcEEee
Confidence 6899999999999999887665 57899999998888888764
No 22
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=57.20 E-value=9.9 Score=32.04 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred eccchhhhhhhccccCCCCCCCCcccchhH----HHHHHHHHHHHHHhcCcceeEeechhh-------------------
Q 031877 45 ASSSKQDFYSHYHSKLNPFPKRHRFWDSNT----VVVVGQKLGSQLREIGIDNVMINLAEE------------------- 101 (151)
Q Consensus 45 ASS~Eq~~r~~~e~~l~~~~rs~~~~Daka----Aa~VGe~La~RLk~~Gi~~V~id~~eE------------------- 101 (151)
|+....-+...++ |+..+ =.-|-++| -.|++.|++.|.+-+-=|
T Consensus 1 ~~~~~~v~~q~F~------------W~~~~~gG~~~gi~~~L-dyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~ 67 (515)
T 1hvx_A 1 AAPFNGTMMQYFE------------WYLPDDGTLWTKVANEA-NNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGE 67 (515)
T ss_dssp CCCCCCCEEECCC------------TTCCSSSCHHHHHHHHH-HHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSC
T ss_pred CCCCCceEEEEEE------------ccCCCCCCcHHHHHHHH-HHHHhcCCCEEEeCCcccCCCCCCCCcCeeccccccc
Q ss_pred ------ccccccccchhhHHHHHHHHcCeeee
Q 031877 102 ------LSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 102 ------~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
+...+=-..-.+.|++.+.++||+|+
T Consensus 68 f~~~~~idp~~Gt~~dfk~Lv~~aH~~Gi~Vi 99 (515)
T 1hvx_A 68 FNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVY 99 (515)
T ss_dssp SCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred ccccCccCCCCCCHHHHHHHHHHHHHCCCEEE
No 23
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=52.73 E-value=24 Score=27.90 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhc-cc--c-----cccc-------------chhhHHHHHHHHcCeeee
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEEL-SR--P-----ANQR-------------IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~-sr--~-----~kyr-------------~kV~al~dSlR~~GVkv~ 127 (151)
.|.+.+..-|+..|+++|.|-+--|= .. | ..|. .-.+.|++.+.++||+|+
T Consensus 23 ~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~Vi 94 (496)
T 4gqr_A 23 DIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIY 94 (496)
T ss_dssp HHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 35566777799999999999875442 11 1 1222 158999999999999996
No 24
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=52.16 E-value=31 Score=23.49 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCcceeEeechhh
Q 031877 76 VVVGQKLGSQLREIGIDNVMINLAEE 101 (151)
Q Consensus 76 a~VGe~La~RLk~~Gi~~V~id~~eE 101 (151)
-++|..|+.+|+..|.+-+-+|.++|
T Consensus 16 G~~G~~la~~L~~~g~~v~vid~~~~ 41 (140)
T 3fwz_A 16 GRVGSLLGEKLLASDIPLVVIETSRT 41 (140)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 47899999999999999999998865
No 25
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=51.37 E-value=30 Score=21.23 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=26.7
Q ss_pred HHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877 81 KLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 81 ~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk 125 (151)
.|...+....=+.|.|..+ +...| +.|-.+++.+|++|+.
T Consensus 35 ~l~~~~~~~~~~~V~I~aD----~~~~y-~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 35 LSRQEFDKDNNTLFLVGGA----KEVPY-EEVIKALNLLHLAGIK 74 (74)
T ss_dssp HHHHHHHHCTTCCEEEEEC----TTSCH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhCCCceEEEEcC----CCCCH-HHHHHHHHHHHHcCCC
Confidence 3333333333356889888 44555 4688999999999984
No 26
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=51.14 E-value=18 Score=30.65 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- ....+|+++|.+.+++.+..
T Consensus 6 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~i~~i~~ 47 (563)
T 2uz1_A 6 GGELVVRTLIKAGVEHLFGLHG----------AHIDTIFQACLDHDVPIIDT 47 (563)
T ss_dssp HHHHHHHHHHHHTCCCEEECCC----------GGGHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCC----------CchHHHHHHHHhcCCcEEee
Confidence 6899999999999999887665 66789999998888887764
No 27
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=51.09 E-value=22 Score=30.68 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc--Ceeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA--GVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~--GVkv~g~ 129 (151)
.+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+. +++.+..
T Consensus 12 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~dal~~~~~~i~~i~~ 56 (603)
T 4feg_A 12 LAGAAVIKVLEAWGVDHLYGIPG----------GSINSIMDALSAERDRIHYIQV 56 (603)
T ss_dssp EHHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHHHHHTTTTSEEEEC
T ss_pred eHHHHHHHHHHHCCCCEEEEeCC----------CchHHHHHHHHhccCCCeEEEe
Confidence 47899999999999999887665 6789999999984 7888765
No 28
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=48.90 E-value=34 Score=28.94 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred Ccc-cchhHH------HHHHHHHHHHHHhcCcceeEeechh---------------------hcc--ccccccchhhHHH
Q 031877 67 HRF-WDSNTV------VVVGQKLGSQLREIGIDNVMINLAE---------------------ELS--RPANQRIMVLPLF 116 (151)
Q Consensus 67 ~~~-~DakaA------a~VGe~La~RLk~~Gi~~V~id~~e---------------------E~s--r~~kyr~kV~al~ 116 (151)
|.| ||+..- .-|-++| -.|++.||+.|++-+-= .+. ..+=-..-.+.|+
T Consensus 21 q~F~w~~~~~~gGd~~~gi~~~L-dyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~~~~id~~p~~Gt~~dfk~Lv 99 (527)
T 1gcy_A 21 QGFHWNVVREAPNDWYNILRQQA-ATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAA 99 (527)
T ss_dssp ECCCTTHHHHSTTTHHHHHHHHH-HHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHH
T ss_pred EEEEcCCCcccCCcHHHHHHHHH-HHHHhcCCCEEEeCCccccccccccCCCCCCCCCcccccCCCCCCCCCHHHHHHHH
Q ss_pred HHHHHcCeeee
Q 031877 117 DSVRRAGVVVD 127 (151)
Q Consensus 117 dSlR~~GVkv~ 127 (151)
+.+.++||+|+
T Consensus 100 ~~aH~~GI~Vi 110 (527)
T 1gcy_A 100 SALGGAGVKVL 110 (527)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHCCCEEE
No 29
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=48.67 E-value=23 Score=29.17 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCcceeEeechhhcccc-------c----------------cc--cchhhHHHHHHHHcCeeee
Q 031877 76 VVVGQKLGSQLREIGIDNVMINLAEELSRP-------A----------------NQ--RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 76 a~VGe~La~RLk~~Gi~~V~id~~eE~sr~-------~----------------ky--r~kV~al~dSlR~~GVkv~ 127 (151)
.-|-++| -.|++.||+.|.+-+-=|-.-| . +| ..-.+.|++.+.++||+|+
T Consensus 23 ~gi~~~L-dyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df~~lv~~aH~~Gi~Vi 98 (480)
T 1ud2_A 23 NRLHDDA-AALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVY 98 (480)
T ss_dssp HHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3456678 5999999999988765442110 0 11 2247889999999999985
No 30
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=47.94 E-value=28 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- +...+|+|+|.+. +++.+..
T Consensus 7 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~i~~ 49 (552)
T 1ovm_A 7 VADYLLDRLTDCGADHLFGVPG----------DYNLQFLDHVIDSPDICWVGC 49 (552)
T ss_dssp HHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCC----------hhHHHHHHHHhcCCCceEEee
Confidence 6899999999999999888765 6788999999876 6877653
No 31
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=47.50 E-value=25 Score=29.04 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhh-------------------------ccccccccchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEE-------------------------LSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE-------------------------~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.|++.||+.|.+.+--| +...+=-..-.+.|++.+.++||+|+
T Consensus 27 i~~~L-dyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi 100 (485)
T 1wpc_A 27 LNSDA-SNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVY 100 (485)
T ss_dssp HHHHH-HHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEE
No 32
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=47.45 E-value=25 Score=30.27 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 73 NTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 73 kaAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
..-..+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+. +|+.+..
T Consensus 28 ~~~~~~a~~lv~~L~~~GV~~vFg~PG----------~~~~~l~dal~~~~~i~~i~~ 75 (604)
T 2x7j_A 28 NPITHYIGSFIDEFALSGITDAVVCPG----------SRSTPLAVLCAAHPDISVHVQ 75 (604)
T ss_dssp CHHHHHHHHHHHHHHHHTCCEEEECCC----------STTHHHHHHHHHCTTCEEEEC
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEECcC----------cccHHHHHHHHhCCCceEEEe
Confidence 345578999999999999999988766 6789999999875 6887754
No 33
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=47.40 E-value=34 Score=29.21 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 74 TVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 74 aAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
+...+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+. +|+.+..
T Consensus 9 ~~~~~a~~lv~~L~~~GV~~vFg~PG----------~~~~~l~dal~~~~~i~~i~~ 55 (578)
T 3lq1_A 9 VLTDYLAAFIEELVQAGVKEAIISPG----------SRSTPLALMMAEHPILKIYVD 55 (578)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCC----------TTTHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCC----------CccHHHHHHHHhCCCceEEEe
Confidence 34579999999999999999877665 5679999999875 7887664
No 34
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=47.08 E-value=25 Score=28.96 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhh-------------------------ccccccccchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEE-------------------------LSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE-------------------------~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.|++.||++|.+.+-=| +...+=-..-.+.|++.+.++||+|+
T Consensus 23 i~~~L-dyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~Gt~~df~~lv~~aH~~Gi~Vi 96 (483)
T 3bh4_A 23 LQNDA-EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVY 96 (483)
T ss_dssp HHHHH-HHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEE
No 35
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=46.73 E-value=27 Score=28.69 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhcccc----ccc-------------cchhhHHHHHHHHcCeeee
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRP----ANQ-------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~----~ky-------------r~kV~al~dSlR~~GVkv~ 127 (151)
-|-++|--.|++.||+.|.+.+--|-..+ ..| ..-.++|++.+.++||+|+
T Consensus 15 gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~Gi~Vi 82 (448)
T 1g94_A 15 DVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIY 82 (448)
T ss_dssp HHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34566667999999999998765443111 122 2247899999999999986
No 36
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=46.42 E-value=25 Score=29.82 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- +.+.+++|+|.+. +++.+..
T Consensus 5 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~i~~ 47 (568)
T 2wvg_A 5 VGTYLAERLVQIGLKHHFAVAG----------DYNLVLLDNLLLNKNMEQVYC 47 (568)
T ss_dssp HHHHHHHHHHHTTCSEEEECCC----------TTTHHHHHHHHTCTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCC----------CccHHHHHHHhccCCceEecc
Confidence 6899999999999999888765 6789999999876 6877654
No 37
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=45.98 E-value=31 Score=29.29 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
.+++.|..+|++.||+.|-.-.- +...+|+|+|.+. +++.+..
T Consensus 26 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~i~~ 69 (570)
T 2vbf_A 26 TVGDYLLDRLHELGIEEIFGVPG----------DYNLQFLDQIISREDMKWIGN 69 (570)
T ss_dssp BHHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHHHHHCSSCEEEEC
T ss_pred CHHHHHHHHHHHcCCCEEEECCC----------cchHHHHHHHhcCCCCeEECc
Confidence 47899999999999999887765 6788999999875 6877654
No 38
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=45.31 E-value=17 Score=23.06 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=24.2
Q ss_pred CcceeEeechhhccccccccchhhHHHHHHHHcCeeeec
Q 031877 90 GIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 90 Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g 128 (151)
|+..|-+|++.-|-....-..-+.++++.|++.|+++.-
T Consensus 1 ~~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i 39 (137)
T 2pr7_A 1 GMRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVI 39 (137)
T ss_dssp CCCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEE
Confidence 345666777765633322333467788888888877643
No 39
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=44.86 E-value=23 Score=29.98 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+. +++.+..
T Consensus 6 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~v~~ 48 (563)
T 2vk8_A 6 LGKYLFERLKQVNVNTVFGLPG----------DFNLSLLDKIYEVEGMRWAGN 48 (563)
T ss_dssp HHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHGGGGSTTCEECCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCC----------cchHHHHHHHhhcCCceEEcc
Confidence 6899999999999999888766 6788999999876 6877654
No 40
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=44.31 E-value=27 Score=29.59 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- ..+.+|+|+|.+. +++.+..
T Consensus 5 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~v~~ 47 (566)
T 2vbi_A 5 VGMYLAERLVQIGLKHHFAVAG----------DYNLVLLDQLLLNKDMKQIYC 47 (566)
T ss_dssp HHHHHHHHHHHHTCSEEEECCC----------TTTHHHHHHHHTCTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCC----------CccHHHHHHHhcCCCCeEEee
Confidence 6899999999999999888765 6788999999876 6877654
No 41
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=43.16 E-value=31 Score=29.35 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHH-cCeeeecc
Q 031877 76 VVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRR-AGVVVDGL 129 (151)
Q Consensus 76 a~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~-~GVkv~g~ 129 (151)
-.+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+ .+++.+..
T Consensus 8 ~~~a~~lv~~L~~~GV~~vFg~PG----------~~~~~l~dal~~~~~i~~i~~ 52 (556)
T 3hww_A 8 RRWAAVILEALTRHGVRHICIAPG----------SRSTLLTLAAAENSAFIHHTH 52 (556)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECCC----------TTSHHHHHHHHHCTTCEEEEC
T ss_pred hHHHHHHHHHHHHCCCCEEEEcCC----------CCcHHHHHHHhhCCCceEEEe
Confidence 458999999999999999877665 567899999966 47877764
No 42
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=43.12 E-value=49 Score=21.97 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCcceeEeechhh
Q 031877 76 VVVGQKLGSQLREIGIDNVMINLAEE 101 (151)
Q Consensus 76 a~VGe~La~RLk~~Gi~~V~id~~eE 101 (151)
-.+|.-|+.+|...|.+-+=+|.++|
T Consensus 15 G~iG~~la~~L~~~g~~V~~id~~~~ 40 (141)
T 3llv_A 15 EAAGVGLVRELTAAGKKVLAVDKSKE 40 (141)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 46899999999999998888888755
No 43
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=42.62 E-value=29 Score=28.37 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccc--------------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQ--------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~ky--------------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.|++.||+.|++.+=-|-.....| ..-.+.|++.+.++||+|+
T Consensus 52 i~~~L-dyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~Vi 114 (475)
T 2z1k_A 52 VAEKL-PYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVI 114 (475)
T ss_dssp HHHTH-HHHHHHTCCEEEECCCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHh-HHHHHcCCCEEEECCCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 44677 7999999999988754332111112 2357889999999999985
No 44
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=42.58 E-value=17 Score=30.59 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=40.6
Q ss_pred ccchhHHHHHHHHHHHHHHhcCcce---eEeechhh---------c--cccccccchhhHHHHHHHHcCee
Q 031877 69 FWDSNTVVVVGQKLGSQLREIGIDN---VMINLAEE---------L--SRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 69 ~~DakaAa~VGe~La~RLk~~Gi~~---V~id~~eE---------~--sr~~kyr~kV~al~dSlR~~GVk 125 (151)
+||...+..+|+.+|..|+..||+- =.+|+..+ - .-|.---.+..+.++-++..||-
T Consensus 104 t~d~~l~~~~g~~~a~E~ra~Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~gV~ 174 (351)
T 3tev_A 104 ADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTREGVA 174 (351)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 5999999999999999999999864 11233311 1 22222335778899999999873
No 45
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=42.21 E-value=27 Score=29.74 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~ 129 (151)
.+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+.+++.+..
T Consensus 12 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~i~~v~~ 54 (566)
T 1ozh_A 12 HGADLVVSQLEAQGVRQVFGIPG----------AKIDKVFDSLLDSSIRIIPV 54 (566)
T ss_dssp CHHHHHHHHHHHHTCCEEEEECC----------TTTHHHHHHGGGSSSEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEEEcCC----------CchHHHHHHHHhCCCcEEEe
Confidence 46899999999999999888765 66899999998777887754
No 46
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=41.70 E-value=27 Score=30.05 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCcceeEeechhhcccccccc--------------chhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQR--------------IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr--------------~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.||+.||+.|++.+==|-...-.|. .-.+.|++.+.++||+|+
T Consensus 174 i~~~L-dyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~Vi 236 (583)
T 1ea9_C 174 VIDHL-DHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVL 236 (583)
T ss_dssp HHHTH-HHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEE
T ss_pred HHHhh-HHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 44677 79999999999988654431111222 247899999999999996
No 47
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=41.12 E-value=29 Score=29.72 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCcceeEeechhhcccccccc--------------chhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQR--------------IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr--------------~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.||+.||+.|++.+=-|-...-.|. .-.+.|++.+.++||+|+
T Consensus 175 i~~~L-dyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~Vi 237 (585)
T 1wzl_A 175 VIDRL-PYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKII 237 (585)
T ss_dssp HHHTH-HHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHh-HHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 45677 79999999999987654431111222 248899999999999996
No 48
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=39.76 E-value=43 Score=28.62 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
.+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+. +++.+..
T Consensus 13 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~i~~ 56 (590)
T 1ybh_A 13 KGADILVEALERQGVETVFAYPG----------GASMEIHQALTRSSSIRNVLP 56 (590)
T ss_dssp EHHHHHHHHHHTTTCCEEEECCC----------GGGHHHHHHHHHCSSCEECCC
T ss_pred cHHHHHHHHHHHcCCCEEEEcCC----------CchHHHHHHHhccCCccEEee
Confidence 47899999999999998877665 6789999999875 5887764
No 49
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=38.86 E-value=24 Score=28.23 Aligned_cols=47 Identities=26% Similarity=0.308 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCcceeEeech--hhc---cccccccchhhHHHHHHHHcCeee
Q 031877 80 QKLGSQLREIGIDNVMINLA--EEL---SRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~--eE~---sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
+....+|++.|++.|+++++ +|+ -++-+.-..++..++.+++.|+++
T Consensus 159 ~e~l~~L~~aGvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 210 (369)
T 1r30_A 159 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 210 (369)
T ss_dssp HHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHCCCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCee
Confidence 44567899999999887775 343 112223356778888888999875
No 50
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=38.67 E-value=19 Score=29.75 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA 122 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~ 122 (151)
.....+...|++.|||-+.++.+.--.-....+++|-|+++.|+..
T Consensus 330 ~~~~~~~~~~~~~giP~l~ie~D~~~~~~~q~~TRieAF~Eml~~~ 375 (385)
T 3o3m_B 330 YDYPLVRKDIEDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMMSLA 375 (385)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTC--
T ss_pred hhHHHHHHHHHHCCCCEEEEEecCCCCChHHHHHHHHHHHHHHHHh
Confidence 3456677788889999988887743343347889999999988543
No 51
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=38.67 E-value=11 Score=26.67 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=20.9
Q ss_pred eechhhc-cccccccchhhH-HHHHHHHcCee
Q 031877 96 INLAEEL-SRPANQRIMVLP-LFDSVRRAGVV 125 (151)
Q Consensus 96 id~~eE~-sr~~kyr~kV~a-l~dSlR~~GVk 125 (151)
++++.|. ..=.++|..||| |.++||++||.
T Consensus 8 ~~L~p~~~~eY~~~H~~vWPEv~~~L~~aGi~ 39 (104)
T 1x8d_A 8 MQVNPDAHEEYQRRHNPIWPELEAVLKSHGAH 39 (104)
T ss_dssp EECCTTCHHHHHHTTTTCCHHHHHHHHHTTEE
T ss_pred EEcChhHHHHHHHHHHhcCHHHHHHHHHcCCe
Confidence 3444444 333457789997 77899999986
No 52
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=38.37 E-value=39 Score=25.68 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecccc
Q 031877 80 QKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEK 131 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~ 131 (151)
..++.+|...|++.|...-. .+-..+++.+++.||.++|.|.
T Consensus 171 ~~~a~~ll~~~~daI~~~~D----------~~a~Gv~~a~~e~Gv~viG~D~ 212 (296)
T 2hqb_A 171 LELFQELQKEQVDVFYPAGD----------GYHVPVVEAIKDQGDFAIGYVG 212 (296)
T ss_dssp HHHHHHHHTTTCCEEECCCT----------TTHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHCCCcEEEECCC----------CCCHHHHHHHHHcCCEEEEEec
Confidence 34455555667776654433 3446789999999999999987
No 53
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=37.46 E-value=42 Score=27.55 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCcceeEeechhhcc-c----ccccc-----------------chhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELS-R----PANQR-----------------IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~s-r----~~kyr-----------------~kV~al~dSlR~~GVkv~ 127 (151)
|-++| ..|++.|++.|++.+--|-. . +..|+ .-.++|++.+.++||+|+
T Consensus 45 i~~~L-dyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~Vi 115 (478)
T 2guy_A 45 IIDKL-DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLM 115 (478)
T ss_dssp HHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 44677 79999999999987543321 0 11122 247899999999999986
No 54
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=36.68 E-value=46 Score=27.04 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCcceeEeechhhccccccc--------------cchhhHHHHHHHHcCeeee
Q 031877 80 QKLGSQLREIGIDNVMINLAEELSRPANQ--------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~sr~~ky--------------r~kV~al~dSlR~~GVkv~ 127 (151)
++| -.|++.||+.|.+.+=-|-.-.-.| ..-.+.|++.+.++||+|+
T Consensus 27 ~~L-dyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~Vi 87 (441)
T 1lwj_A 27 NAV-SYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVV 87 (441)
T ss_dssp HTH-HHHHHTTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred Hhh-HHHHHcCCCEEEeCCCcCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 566 5999999999987654332111111 2348899999999999987
No 55
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=36.48 E-value=40 Score=28.88 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc--Ceeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA--GVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~--GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- ..+.+|+++|.+. +|+.+..
T Consensus 6 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~~i~~v~~ 49 (589)
T 2pgn_A 6 GADLIVEALEEYGTEQVVGFIG----------HTSHFVADAFSKSHLGKRVINP 49 (589)
T ss_dssp HHHHHHHHHHHTTCCEEEEECS----------GGGHHHHHHHHTSTTSTTCBCC
T ss_pred HHHHHHHHHHHcCCCEEEEecC----------CchHHHHHHHHhcCCCCeEEEe
Confidence 6899999999999999888766 6689999999874 5777654
No 56
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=36.34 E-value=33 Score=26.72 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCcceeEeech---hhc-c--cccc-ccchhhHHHHHHHHcCeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLA---EEL-S--RPAN-QRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~---eE~-s--r~~k-yr~kV~al~dSlR~~GVkv 126 (151)
+-+ .+..|++.|++.|.|.++ +|. . ++.. .-.+|+.-++.++++|+++
T Consensus 108 l~~-~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v 162 (340)
T 1tv8_A 108 LKK-HGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNV 162 (340)
T ss_dssp HHH-HHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEE
T ss_pred hHH-HHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCE
Confidence 344 678899999998777764 443 1 1222 4467888889999999753
No 57
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=36.08 E-value=43 Score=28.74 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccc--------------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQ--------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~ky--------------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.||+.||+.|++.+==|-...-.| -.-.+.|++.+.++||+|+
T Consensus 178 i~~~L-dyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~Vi 240 (588)
T 1j0h_A 178 IIDHL-DYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240 (588)
T ss_dssp HHHTH-HHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 34677 7999999999998764332111122 1357899999999999986
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=35.44 E-value=48 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCcceeEeechhhc
Q 031877 76 VVVGQKLGSQLREIGIDNVMINLAEEL 102 (151)
Q Consensus 76 a~VGe~La~RLk~~Gi~~V~id~~eE~ 102 (151)
-++|..++..|+..|++-+=||.++|.
T Consensus 13 Gr~G~~va~~L~~~g~~vvvId~d~~~ 39 (413)
T 3l9w_A 13 GRFGQITGRLLLSSGVKMVVLDHDPDH 39 (413)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECCHHH
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence 478999999999999999999988553
No 59
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=33.44 E-value=68 Score=18.18 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877 75 VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 75 Aa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~ 129 (151)
+..|-+.|. +. |+..+.+|+....-. +.+... -.+...++..|..+...
T Consensus 16 ~~~i~~~l~---~~-gv~~~~v~~~~~~~~-v~~~~~-~~i~~~i~~~Gy~~~~~ 64 (67)
T 2kyz_A 16 KMRISKALE---EL-GVKNYEVSVEEKKVV-VETENL-DSVLKKLEEIDYPVESY 64 (67)
T ss_dssp HHHHHHHHH---HH-TCSEEEEETTTTEEE-EECSCH-HHHHHHHHTTTCCCCBC
T ss_pred HHHHHHHHH---Hc-CCeEEEEECCCCEEE-EEECCH-HHHHHHHHHcCCceeeE
Confidence 344555443 23 999999998644311 112222 57788888888765543
No 60
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=32.88 E-value=55 Score=28.77 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccc--------cccc---------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSR--------PANQ---------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr--------~~ky---------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.|++.||+.|++.+=-|-.. +..| -.-++.|++.+.++||+|+
T Consensus 108 i~~~L-dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~Vi 173 (644)
T 3czg_A 108 VAERV-PYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLC 173 (644)
T ss_dssp HHHTH-HHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 44677 899999999999876533211 1112 1258899999999999987
No 61
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=32.57 E-value=47 Score=30.08 Aligned_cols=56 Identities=27% Similarity=0.518 Sum_probs=39.9
Q ss_pred ccchhHHHHHHHHHHHHHHhcCcce---eEeechhhc--cc--------cccccchhhHHHHHHHHcCe
Q 031877 69 FWDSNTVVVVGQKLGSQLREIGIDN---VMINLAEEL--SR--------PANQRIMVLPLFDSVRRAGV 124 (151)
Q Consensus 69 ~~DakaAa~VGe~La~RLk~~Gi~~---V~id~~eE~--sr--------~~kyr~kV~al~dSlR~~GV 124 (151)
+||...+.++|+.+|..++..||+- =.+|+...- -| |.---.+..+.++-++..||
T Consensus 90 t~d~~l~~~~g~~~a~E~~a~Gi~~~~aP~vdi~r~p~~gR~~e~fgeDP~l~~~~a~a~v~G~q~~gV 158 (721)
T 2x41_A 90 TWNRELLEEVGKAMGEEVREYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQGV 158 (721)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECCCBCCCCCSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCEEeeceECCCCCCCCCcccccCCCCHHHHHHHHHHHHHHhhhCCe
Confidence 6999999999999999999999853 123444221 11 11113467889999999886
No 62
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=32.46 E-value=45 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCcceeEeechhhccccccccc-----------------hhhHHHHHHHHcCeeee
Q 031877 80 QKLGSQLREIGIDNVMINLAEELSRPANQRI-----------------MVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~sr~~kyr~-----------------kV~al~dSlR~~GVkv~ 127 (151)
++| -.||+.||++|++-+==| -|..+++ -+++|++.+.++||+|+
T Consensus 36 ~kL-dYLk~LGvt~I~L~Pi~~--~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~Vi 97 (549)
T 4aie_A 36 SRL-DYLEKLGIDAIWLSPVYQ--SPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIV 97 (549)
T ss_dssp TTH-HHHHHHTCSEEEECCCEE--CCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred Hhh-HHHHHCCCCEEEeCCCcC--CCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 445 489999999999876422 2222222 38899999999999996
No 63
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=32.45 E-value=12 Score=27.06 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHHHHHhcCcceeEee
Q 031877 70 WDSNTVVVVGQKLGSQLREIGIDNVMIN 97 (151)
Q Consensus 70 ~DakaAa~VGe~La~RLk~~Gi~~V~id 97 (151)
.|+-.-+-||++||.||-++|++.-+.=
T Consensus 18 K~V~evpGIG~~~~~~L~~~Gf~kAy~l 45 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEERGFDKAYVV 45 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHH
T ss_pred CCcccCCCcCHHHHHHHHHcCccHHHHH
Confidence 4677778899999999999999874443
No 64
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=32.36 E-value=48 Score=26.95 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhhc-cc-----------ccccc---------chhhHHHHHHHHcCeeeec
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEEL-SR-----------PANQR---------IMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~-sr-----------~~kyr---------~kV~al~dSlR~~GVkv~g 128 (151)
|-++| ..|+..|++.|++.+--|. +. +..|. .-++.|++.+.++||+|+-
T Consensus 32 i~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~Gi~vi~ 102 (449)
T 3dhu_A 32 VTADL-QRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVML 102 (449)
T ss_dssp HHTTH-HHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhH-HHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44677 7999999999998875443 11 12221 4578899999999999863
No 65
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=32.21 E-value=55 Score=26.59 Aligned_cols=50 Identities=8% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhcc-c---------------cccc---------cchhhHHHHHHHHcCeeee
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELS-R---------------PANQ---------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~s-r---------------~~ky---------r~kV~al~dSlR~~GVkv~ 127 (151)
-|-++| ..|++.|++.|.+-+--|.. - |..| ..-.+.|++.+.++||+|+
T Consensus 18 ~i~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~Gi~Vi 92 (422)
T 1ua7_A 18 TLKHNM-KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVI 92 (422)
T ss_dssp HHHHTH-HHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHH-HHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345677 57999999999988733321 0 1111 1247899999999999995
No 66
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=31.78 E-value=31 Score=29.02 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHhcCcce-----eEee--chh----hc--cccccccchhhHHHHHHHHcCee
Q 031877 73 NTVVVVGQKLGSQLREIGIDN-----VMIN--LAE----EL--SRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 73 kaAa~VGe~La~RLk~~Gi~~-----V~id--~~e----E~--sr~~kyr~kV~al~dSlR~~GVk 125 (151)
+.|..+|+.+|..|+..||+- +.++ .+. |- .-|.---.+..+.++-++..||-
T Consensus 107 ~la~~~g~~~a~El~a~Gi~~~~aPv~Dv~~gr~~~iG~rsfgeDP~lv~~~a~A~v~Glq~~GV~ 172 (348)
T 4g6c_A 107 KVATAVGYILAAELRACGIDMSFTPVLDLDYGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLAGMA 172 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECCCBCCCCCSCCTTTGGGSCCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEeecCccCCCCCCCCCccCcCCCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 578899999999999999863 3332 221 11 22333345778899999999873
No 67
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=31.54 E-value=54 Score=27.05 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccc--------------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQ--------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~ky--------------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.|++.||+.|.+.+=-|-.....| ..-.+.|++.+.++||+|+
T Consensus 58 i~~~L-dyL~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi 120 (488)
T 2wc7_A 58 IMEDL-DYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVV 120 (488)
T ss_dssp HHHTH-HHHHHHTCCEEEESCCEEECTTCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhh-HHHHHcCCCEEEECCCCCCCCCCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 33667 5999999999988754332111111 2357899999999999987
No 68
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=31.51 E-value=34 Score=30.57 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=40.9
Q ss_pred ccchhHHHHHHHHHHHHHHhcCcce---eEeechhhc-----------cccccccchhhHHHHHHHHcCeee
Q 031877 69 FWDSNTVVVVGQKLGSQLREIGIDN---VMINLAEEL-----------SRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 69 ~~DakaAa~VGe~La~RLk~~Gi~~---V~id~~eE~-----------sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
+||...|.++|+.+|..|+..||+- =.+|+..+- .-|.---.+..+.++-++..||--
T Consensus 147 t~d~~l~~~~g~~~a~E~ra~Gi~~~~aPvvDv~r~p~~grig~rsfgeDP~lv~~~a~a~v~Glq~~gV~a 218 (642)
T 3bmx_A 147 ARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIAS 218 (642)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCEEECCccccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHhCCceE
Confidence 5999999999999999999999854 123333111 112222356789999999998743
No 69
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=30.56 E-value=43 Score=24.17 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc
Q 031877 73 NTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA 122 (151)
Q Consensus 73 kaAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~ 122 (151)
+|+..+=..||.||+..=+|.+++-.+ ..+.|-.++-.||+.++..
T Consensus 73 ~a~g~iR~~l~~~l~lr~~PeL~F~~D----~s~e~~~~i~~Ll~~~~~~ 118 (128)
T 1jos_A 73 KASPYIRSLLGKAMRLRIVPEIRFIYD----QSLVEGMRMSNLVTNVVRE 118 (128)
T ss_dssp HTHHHHHHHHHHHHCCSSCCEEEEEEC----CCCCCCC------------
T ss_pred HHHHHHHHHHHhhcCCCcCCeEEEEEc----CcHHHHHHHHHHHHHHHhc
Confidence 678889999999999888999999999 8888888999999988654
No 70
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=29.55 E-value=55 Score=29.10 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecc
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGL 129 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~ 129 (151)
.+++.|..+|+..||+.|-.-.- +.+.+|+|+|.+. +|+.+..
T Consensus 83 ~~a~~lv~~L~~~GV~~vFg~PG----------~~~~pl~dal~~~~~i~~v~~ 126 (677)
T 1t9b_A 83 TGGQIFNEMMSRQNVDTVFGYPG----------GAILPVYDAIHNSDKFNFVLP 126 (677)
T ss_dssp BHHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHHTTTCSSSEEECC
T ss_pred CHHHHHHHHHHHcCCCEEEEecC----------ccHHHHHHHHHhCCCCeEEEe
Confidence 47899999999999999888765 7789999999764 5877654
No 71
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=29.26 E-value=58 Score=25.16 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCcceeEeech---hhc---cccccccchhhHHHHHHHHcCeee
Q 031877 79 GQKLGSQLREIGIDNVMINLA---EEL---SRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 79 Ge~La~RLk~~Gi~~V~id~~---eE~---sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
-+....+|++.|++.|.++++ +|+ -+|-+.-..+...++.+++.|+++
T Consensus 141 ~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 194 (348)
T 3iix_A 141 PREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYET 194 (348)
T ss_dssp CHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCee
Confidence 356678899999999887765 333 122234456777788899999875
No 72
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A*
Probab=28.97 E-value=30 Score=29.15 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=39.5
Q ss_pred cccch----hHHHHHHHHHHHHHHhcCcce---eEeechh-------hc--cccccccchhhHHHHHHHHcCee
Q 031877 68 RFWDS----NTVVVVGQKLGSQLREIGIDN---VMINLAE-------EL--SRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 68 ~~~Da----kaAa~VGe~La~RLk~~Gi~~---V~id~~e-------E~--sr~~kyr~kV~al~dSlR~~GVk 125 (151)
.+||. ..|..+|+.+|..|+..||+- =.+|+.. |- .-|.---.+..+.++-++..||-
T Consensus 86 at~d~~~~~~la~~~g~~~a~Elra~Gin~~faPv~Dv~r~~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~GV~ 159 (349)
T 4gvf_A 86 ALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPAKALAMATRFIDGMHDAGMK 159 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEECCCBCCCCSCCTTTGGGSSCSSHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHcCCCEEecCcccCCCCCCCCcCcCCCCCHHHHHHHHHHHHHHHHHcCce
Confidence 35787 788999999999999999854 1133331 11 12222234678899999999873
No 73
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=28.89 E-value=52 Score=29.03 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCcceeEeechhhc--ccccccc--------------chhhHHHHHHHHcCeeeec
Q 031877 79 GQKLGSQLREIGIDNVMINLAEEL--SRPANQR--------------IMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 79 Ge~La~RLk~~Gi~~V~id~~eE~--sr~~kyr--------------~kV~al~dSlR~~GVkv~g 128 (151)
-++| -.|++.||+.|++-.--|. ...-.|. .-++.+++.+.++||+|+-
T Consensus 157 ~~~L-~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~Gi~Vil 221 (618)
T 3m07_A 157 IAKL-PYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVL 221 (618)
T ss_dssp HTTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHH-HHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 3677 7999999999998766553 1111222 2489999999999999863
No 74
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=28.72 E-value=27 Score=31.14 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeec
Q 031877 71 DSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 71 DakaAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g 128 (151)
|+.+..++-++|..+|++.|+..+..+++ -.+.+++-.+..+||.|+-
T Consensus 166 DA~~l~~L~~~L~~~L~e~~l~~l~~~~E----------~pl~~vl~~me~~Gi~vD~ 213 (592)
T 3pv8_A 166 KAAAIWELERPFLDELRRNEQDRLLVELE----------QPLSSILAEMEFAGVKVDT 213 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHTH----------HHHHHHHHHHHHHCEEECH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhHHHHHH----------hHHHHHHHHHhcCCEEECH
Confidence 56666788899999999999888776666 2367888888999998874
No 75
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=28.17 E-value=47 Score=27.74 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=39.5
Q ss_pred cc--hhHHHHHHHHHHHHHHhcCcce---eEeechhhccccccc----------cchhhHHHHHHHHcCee
Q 031877 70 WD--SNTVVVVGQKLGSQLREIGIDN---VMINLAEELSRPANQ----------RIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 70 ~D--akaAa~VGe~La~RLk~~Gi~~---V~id~~eE~sr~~ky----------r~kV~al~dSlR~~GVk 125 (151)
|| ...|..+|+.+|.-|+..||+- =.+|+..+ ++++-. -.+..+.++-++..||-
T Consensus 87 ~d~~~~la~~~g~~~a~E~ra~Gi~~~~aPv~Dv~~~-~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~gV~ 156 (340)
T 2oxn_A 87 AENGVELAEQGGWLMAAELIAHDVDLSFAPVLDMGFA-CKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMA 156 (340)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTTCCEECCCBCCCCSC-STTTGGGSSCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCEEecCccCCCCC-CCcCcCCCCCCCHHHHHHHHHHHHHHHHHCCce
Confidence 78 7899999999999999999854 12344433 222222 34678899999999873
No 76
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=27.90 E-value=60 Score=28.49 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccc--------cccc---------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSR--------PANQ---------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr--------~~ky---------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++| -.|++.||+.|++.+=-|-.. +..| -.-++.|++.+.++||+|+
T Consensus 115 i~~~L-dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~Vi 180 (628)
T 1g5a_A 115 LKDKI-PYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAV 180 (628)
T ss_dssp HHTTH-HHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 44567 799999999999876543211 1111 1248899999999999987
No 77
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=27.64 E-value=70 Score=26.11 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeeccccc
Q 031877 79 GQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132 (151)
Q Consensus 79 Ge~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l 132 (151)
|+.++..|...|++.|..-.. .. .+++..++.|+.++|.|.-
T Consensus 197 g~~~a~~l~~~G~DvIf~~~d-----------~~-Gv~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 197 EADAAKALIDQGVDIITQHTD-----------ST-AAIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHHHHTTCSEEEESSS-----------SS-HHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHhCCCcEEEECCC-----------ch-HHHHHHHHcCCEEEEEcCc
Confidence 566777888889988755444 11 6899999999999998865
No 78
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=27.27 E-value=45 Score=31.13 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=40.8
Q ss_pred cccchhHHHHHHHHHHHHHHhcCccee---Eeechhhc--cc--------cccccchhhHHHHHHHHcCe
Q 031877 68 RFWDSNTVVVVGQKLGSQLREIGIDNV---MINLAEEL--SR--------PANQRIMVLPLFDSVRRAGV 124 (151)
Q Consensus 68 ~~~DakaAa~VGe~La~RLk~~Gi~~V---~id~~eE~--sr--------~~kyr~kV~al~dSlR~~GV 124 (151)
.+||...|.++|+.+|.-++..||+-. .+|+...- -| |.---.+..+.++-++..||
T Consensus 72 at~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~gV 141 (845)
T 3abz_A 72 STFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGI 141 (845)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHTTCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhCCe
Confidence 369999999999999999999998541 23443221 22 22223478899999999986
No 79
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=26.84 E-value=80 Score=23.63 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHhcCcceeEe-echhhccccccccchhhHHHHHHHH-cCeeeecc
Q 031877 81 KLGSQLREIGIDNVMI-NLAEELSRPANQRIMVLPLFDSVRR-AGVVVDGL 129 (151)
Q Consensus 81 ~La~RLk~~Gi~~V~i-d~~eE~sr~~kyr~kV~al~dSlR~-~GVkv~g~ 129 (151)
.++.++.+.|++.|++ |+. +....++.-++++..+++ .+++|+..
T Consensus 39 ~~a~~~~~~G~~~i~v~d~~----~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 39 DWVVEVEKRGAGEILLTSID----RDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHTTCSEEEEEETT----TTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHcCCCEEEEEecC----cccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 4788889999999986 443 334445556778888776 47777654
No 80
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=26.57 E-value=34 Score=29.39 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc--Ceeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA--GVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~--GVkv~g~ 129 (151)
+++.|...|++.||+.|-.-.- +.+.+|+|+|.+. +|+.+..
T Consensus 6 ~a~~lv~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~~i~~i~~ 49 (590)
T 1v5e_A 6 IGLAVMKILESWGADTIYGIPS----------GTLSSLMDAMGEEENNVKFLQV 49 (590)
T ss_dssp HHHHHHHHHHHTTCCEEEECCC----------TTTHHHHTTSSSTTCCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEecC----------CchHHHHHHHHhcCCCCeEEee
Confidence 6899999999999998887665 6688999999875 7877654
No 81
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=25.94 E-value=84 Score=26.52 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc--Ceeeec
Q 031877 80 QKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA--GVVVDG 128 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~--GVkv~g 128 (151)
..++.+|.+.|++-|.+|.. .+ +...+|..+..+|+. +++|+.
T Consensus 102 ~e~~~~a~~aGvdvI~id~a----~G--~~~~~~e~I~~ir~~~~~~~Vi~ 146 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVA----HA--HAKYVGKTLKSLRQLLGSRCIMA 146 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECS----CC--SSHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCC----CC--CcHhHHHHHHHHHHhcCCCeEEE
Confidence 45788999999999999976 22 345688999999997 787775
No 82
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=25.91 E-value=69 Score=24.32 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeee
Q 031877 83 GSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 83 a~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
-..+++.|++.|-+-+..+-.-...+-..+..+++..+++|+.|+
T Consensus 37 ~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~Vi 81 (294)
T 2whl_A 37 IPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMVAV 81 (294)
T ss_dssp HHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCEEE
Confidence 346789999998887753211222355678899999999999987
No 83
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=25.74 E-value=95 Score=26.63 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc-Ceeeecccc--------cccccc-cceeccc--
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA-GVVVDGLEK--------LAEDRV-GRRLGFC-- 144 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~-GVkv~g~~~--------l~~~~~-~~~~~~~-- 144 (151)
..++.|...|++.||+.|-.-.- +...+|+|+|.+. +|+.+..-. ++--|. |.+.|-|
T Consensus 28 ~~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~ 97 (616)
T 2pan_A 28 RAVDAAMYVLEKEGITTAFGVPG----------AAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLG 97 (616)
T ss_dssp EHHHHHHHHHHHTTCCEEEECCC----------GGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred cHHHHHHHHHHHCCCCEEEECCC----------CccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 46899999999999999888776 6789999999875 688775432 233455 4566644
Q ss_pred ccC
Q 031877 145 HNG 147 (151)
Q Consensus 145 ~~~ 147 (151)
|.|
T Consensus 98 TsG 100 (616)
T 2pan_A 98 TSG 100 (616)
T ss_dssp CST
T ss_pred CCC
Confidence 544
No 84
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=25.20 E-value=18 Score=31.88 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHHH-HhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeec
Q 031877 70 WDSNTVVVVGQKLGSQL-REIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 70 ~DakaAa~VGe~La~RL-k~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g 128 (151)
.|+.+...+-++|..+| ++.|+..+..+++ -.+.+++-.+..+||.|+-
T Consensus 112 ~DA~~t~~L~~~L~~~L~~~~~~~~~~~~iE----------~pl~~vl~~me~~Gi~vD~ 161 (540)
T 4dfk_A 112 ERAALSERLFANLWGRLEGEERLLWLYREVE----------RPLSAVLAHMEATGVRLDV 161 (540)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHTH----------HHHHHHHHHHHHHCBEECH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----------hHHHHHHHHHHhcCEEECH
Confidence 57777888888888888 7777777666655 3467788889999999874
No 85
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Probab=24.99 E-value=1.1e+02 Score=23.50 Aligned_cols=48 Identities=8% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCcceeEeechhhc-cc---c--c------------cccchhhHHHHHHHHcCeeee
Q 031877 80 QKLGSQLREIGIDNVMINLAEEL-SR---P--A------------NQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~-sr---~--~------------kyr~kV~al~dSlR~~GVkv~ 127 (151)
+..-..|+..|++.|-+-+.-+. .. | + .+-..+..+++..+++|+.|+
T Consensus 47 ~~~~~~~~~~G~n~vRi~~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~vi 112 (358)
T 1ece_A 47 RSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRII 112 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCEEEeeccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCEEE
Confidence 34556789999999877765332 11 1 1 144567889999999999987
No 86
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=24.87 E-value=79 Score=26.79 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCcceeEeechhhc-ccccccc--------------chhhHHHHHHHHcCeeee
Q 031877 80 QKLGSQLREIGIDNVMINLAEEL-SRPANQR--------------IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~-sr~~kyr--------------~kV~al~dSlR~~GVkv~ 127 (151)
++| -.|++.||+.|.+.+==|- +..-.|. .-++.|++.+.+.||+|+
T Consensus 35 ~~L-dyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~Vi 96 (543)
T 2zic_A 35 SKL-DYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKII 96 (543)
T ss_dssp HTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 566 6899999999988764332 1111121 247899999999999987
No 87
>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A
Probab=24.86 E-value=45 Score=28.07 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=18.7
Q ss_pred ceeEEEeecCCCCCCceEEEeeccc
Q 031877 24 RKITAQVSDTASAGSSTIVALASSS 48 (151)
Q Consensus 24 k~ITAqVv~~~~~~tstIVA~ASS~ 48 (151)
+.-.+-|+|+ .||.|+||||.-
T Consensus 129 ~~ga~Vvmdp---~TGeILAmas~P 150 (462)
T 3un7_A 129 CKGAVVALEP---STGKILALVSSP 150 (462)
T ss_dssp CCEEEEEECT---TTCBEEEEEEES
T ss_pred CeEEEEEEEC---CCCcEEEEeccC
Confidence 4567889999 999999999963
No 88
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=24.77 E-value=87 Score=25.71 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccc--------cccc------------------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSR--------PANQ------------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr--------~~ky------------------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++| ..|++.|++.|++.+--|-.. +..| ..-.+.|++.+.++||+|+
T Consensus 30 i~~~L-dyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~~~Gt~~df~~lv~~~H~~Gi~Vi 104 (435)
T 1mxg_A 30 IRSKI-PEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVI 104 (435)
T ss_dssp HHHHH-HHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHH-HHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45667 579999999999876444311 1112 1247889999999999986
No 89
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=24.27 E-value=80 Score=27.53 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=14.9
Q ss_pred hhHHHHHHHHcCeeee
Q 031877 112 VLPLFDSVRRAGVVVD 127 (151)
Q Consensus 112 V~al~dSlR~~GVkv~ 127 (151)
.+.|++.+.++||+|+
T Consensus 381 fk~LV~~aH~~GIkVI 396 (884)
T 4aio_A 381 YRQMVQALNRIGLRVV 396 (884)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhcCCcee
Confidence 8889999999999986
No 90
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=24.19 E-value=47 Score=27.75 Aligned_cols=41 Identities=24% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~ 129 (151)
+++.|..+|+..||+.|-.-.- ..+.+|+++|. .+++.+..
T Consensus 4 ~a~~l~~~L~~~GV~~vfg~PG----------~~~~~l~~al~-~~i~~i~~ 44 (528)
T 1q6z_A 4 VHGTTYELLRRQGIDTVFGNPG----------SNALPFLKDFP-EDFRYILA 44 (528)
T ss_dssp HHHHHHHHHHHTTCCEEEECCC----------GGGHHHHTTCC-TTCEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCC----------cchHHHHHHHh-hcCcEEEE
Confidence 6899999999999999887765 56788999883 46766653
No 91
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=24.03 E-value=78 Score=23.36 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhcCcceeEeec--hhhc-cccccc
Q 031877 73 NTVVVVGQKLGSQLREIGIDNVMINL--AEEL-SRPANQ 108 (151)
Q Consensus 73 kaAa~VGe~La~RLk~~Gi~~V~id~--~eE~-sr~~ky 108 (151)
.|--.|-|+=.|-.|..|.++|.||. +|.+ +||+++
T Consensus 27 rAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~vWakGirn 65 (111)
T 4a17_W 27 KAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNGIRN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEECHHHHHHHHTTCSSS
T ss_pred cCHHHHHHHHHHHHHHcCCCceEECcHHHHHHHhccccC
Confidence 46666777778888999999999984 7777 777653
No 92
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=23.88 E-value=85 Score=26.67 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcC
Q 031877 77 VVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAG 123 (151)
Q Consensus 77 ~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~G 123 (151)
.+++.|..+|+..||+.|-.-.- ..+.+|+|+|.+.+
T Consensus 22 ~~a~~lv~~L~~~GV~~vfg~PG----------~~~~~l~~al~~~~ 58 (565)
T 2nxw_A 22 KLAEALLRALKDRGAQAMFGIPG----------DFALPFFKVAEETQ 58 (565)
T ss_dssp BHHHHHHHHHHHTTCCCEEECCC----------GGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCEEEECCC----------cchHHHHHHHHhCC
Confidence 57899999999999999888765 66899999998766
No 93
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=23.85 E-value=1.3e+02 Score=21.90 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=31.2
Q ss_pred HHHHHHhcCcceeEeechhhcccccccc-chhhHHHHHHHHcCeeeecc
Q 031877 82 LGSQLREIGIDNVMINLAEELSRPANQR-IMVLPLFDSVRRAGVVVDGL 129 (151)
Q Consensus 82 La~RLk~~Gi~~V~id~~eE~sr~~kyr-~kV~al~dSlR~~GVkv~g~ 129 (151)
.-..+++.|++.|.+.... +..+. ..+..+-+.+++.|+++.+.
T Consensus 22 ~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~ 66 (290)
T 2qul_A 22 TAKRIAGLGFDLMEISLGE----FHNLSDAKKRELKAVADDLGLTVMCC 66 (290)
T ss_dssp HHHHHHHTTCSEEEEESTT----GGGSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhCCCEEEEecCC----ccccchhhHHHHHHHHHHcCCceEEe
Confidence 3456778899999998762 21111 45677888899999998874
No 94
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=23.56 E-value=38 Score=24.03 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHH
Q 031877 73 NTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRR 121 (151)
Q Consensus 73 kaAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~ 121 (151)
+|+..+=..||.||+..-+|.+++-.+ ..+.|-.++-.||+.+++
T Consensus 68 ~a~g~iR~~l~~~l~lr~~PeL~F~~D----~s~e~~~~i~~Ll~~~~~ 112 (116)
T 1pa4_A 68 QAKGVFSRVLAHNLYLAKAVQIHFVKD----KAIDNAMRIESIINSLKK 112 (116)
T ss_dssp HTHHHHHHHHHTTCCCGGGCCCEECSS----STTSSCC-----------
T ss_pred HhHHHHHHHHHhhcCCccCCeEEEEEC----CcHHHHHHHHHHHHHHHh
Confidence 577788889999998888999999999 888888899999988754
No 95
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=23.37 E-value=95 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877 74 TVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 74 aAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk 125 (151)
++.=||.-++.+|-..|-.-|-+|.++| +...+.+.+++.|.+
T Consensus 15 as~GIG~aiA~~la~~Ga~Vv~~~~~~~---------~~~~~~~~i~~~g~~ 57 (254)
T 4fn4_A 15 AGSGIGRAIAKKFALNDSIVVAVELLED---------RLNQIVQELRGMGKE 57 (254)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHH---------HHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEECCHH---------HHHHHHHHHHhcCCc
Confidence 3456888888888888877776776543 334445555555443
No 96
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=23.36 E-value=87 Score=21.94 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHHHHhcCc-ceeEeechhhccccccccchhhHHHHHHHHcCeeee
Q 031877 71 DSNTVVVVGQKLGSQLREIGI-DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 71 DakaAa~VGe~La~RLk~~Gi-~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
|...+-..+=.+|...+..|- ++|.|-+.-+=-+-.+...-+.+++..++++|+++.
T Consensus 18 d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~~ 75 (117)
T 2fb6_A 18 NKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITIE 75 (117)
T ss_dssp CHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEEE
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeEE
Confidence 344332346667888899995 777776653331223334558999999999998765
No 97
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=23.26 E-value=1.4e+02 Score=24.39 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=44.0
Q ss_pred cccchhHHHHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHH---cCeeeecc
Q 031877 68 RFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRR---AGVVVDGL 129 (151)
Q Consensus 68 ~~~DakaAa~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~---~GVkv~g~ 129 (151)
++.+...-..+-+.+-.-+++.||+..-+|+-+.+.+.+ +..+++.|++ .++-++|-
T Consensus 202 n~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~f-----~~~~~~~~~~~~~~~~~~igE 261 (480)
T 1ud2_A 202 DFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY-----TSDWVRHQRNEADQDLFVVGE 261 (480)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH-----HHHHHHHHHHHCSSCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCCHHH-----HHHHHHHHHHhcCCCcEEEEe
Confidence 456677777788888877888999999999998886653 6677888887 35666664
No 98
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=23.11 E-value=58 Score=29.66 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=41.1
Q ss_pred cccchhHHHHHHHHHHHHHHhcCccee---Eee-chh--------hc--cccccccchhhHHHHHHHHcCee
Q 031877 68 RFWDSNTVVVVGQKLGSQLREIGIDNV---MIN-LAE--------EL--SRPANQRIMVLPLFDSVRRAGVV 125 (151)
Q Consensus 68 ~~~DakaAa~VGe~La~RLk~~Gi~~V---~id-~~e--------E~--sr~~kyr~kV~al~dSlR~~GVk 125 (151)
.+||...+.++|+.+|..++..||+-. .+| +.. |- .-|.---.+..+.++-++..||-
T Consensus 83 at~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vd~v~r~P~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~gV~ 154 (713)
T 3zyz_A 83 STWDVNLIRERGQFIGEEVKASGIHVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSVGVQ 154 (713)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCSEECCCBCSSCCCSTTCTTGGGTTCSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCEEECCeecccCCCCCCCcccccccCCHHHHHHHHHHHHHHHhhCCeE
Confidence 359999999999999999999998531 234 321 11 12222335788999999999873
No 99
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=23.09 E-value=87 Score=20.16 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=24.2
Q ss_pred ceeEeechhhccccccccchhhHHHHHHHHcCeeeec
Q 031877 92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g 128 (151)
..|.|..+ +...| +.|-.++|.+|++|+.=++
T Consensus 58 ~~V~I~aD----~~~~y-~~vv~vmd~l~~aG~~~v~ 89 (99)
T 2pfu_A 58 TTIFFRAD----KTVDY-ETLMKVMDTLHQAGYLKIG 89 (99)
T ss_dssp SCEEEEEC----TTCCH-HHHHHHHHHHHHTCCCCEE
T ss_pred ceEEEEcC----CCCCH-HHHHHHHHHHHHcCCCeEE
Confidence 45888888 55555 4688899999999995444
No 100
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=22.53 E-value=1.8e+02 Score=22.68 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=32.3
Q ss_pred ccCcccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhcc
Q 031877 7 TNSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYH 57 (151)
Q Consensus 7 ~~~~~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e 57 (151)
-|..+|+-=++|| ..-++||-+-. +|.|+++...+|.+++...+
T Consensus 42 Y~P~~fpgli~Rl--~~Pk~t~lIF~-----SGKiv~TGakS~e~a~~a~~ 85 (198)
T 1mp9_A 42 YDPDQFPGLIFRL--ESPKITSLIFK-----SGKMVVTGAKSTDELIKAVK 85 (198)
T ss_dssp CCTTTCSSEEEEE--TTTTEEEEECT-----TSEEEEECCSSHHHHHHHHH
T ss_pred ECCccccceEEEc--CCCceEEEEeC-----CCeEEEeccCCHHHHHHHHH
Confidence 3455566666664 56678888764 59999999888888777666
No 101
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=22.46 E-value=96 Score=27.10 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhh--------------------------ccccccccchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEE--------------------------LSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE--------------------------~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
|-++|- .|++.|++.|.+.+--| +...+=-..-.++|++.+.++||+|+
T Consensus 152 i~~~Ld-yLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~Vi 226 (599)
T 3bc9_A 152 LAERAP-ELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVY 226 (599)
T ss_dssp HHHHHH-HHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHH-HHHHcCCCEEEECCcccCCCCCCCCCCChhhcccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEE
No 102
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=22.39 E-value=92 Score=28.32 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=34.4
Q ss_pred HHHHhcCcceeEeechhhc---ccccccc-chhhHHHHHHHHcCeeee
Q 031877 84 SQLREIGIDNVMINLAEEL---SRPANQR-IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 84 ~RLk~~Gi~~V~id~~eE~---sr~~kyr-~kV~al~dSlR~~GVkv~ 127 (151)
.+||..||+.|++|+===+ ..|.+|- .--++||+-+|++|.||.
T Consensus 41 ~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq 88 (498)
T 1fa2_A 41 KQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQ 88 (498)
T ss_dssp HHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 4799999999999974322 3466664 456789999999999994
No 103
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=22.30 E-value=92 Score=28.27 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=34.7
Q ss_pred HHHHhcCcceeEeechhhc---ccccccc-chhhHHHHHHHHcCeeeec
Q 031877 84 SQLREIGIDNVMINLAEEL---SRPANQR-IMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 84 ~RLk~~Gi~~V~id~~eE~---sr~~kyr-~kV~al~dSlR~~GVkv~g 128 (151)
.+||..||+.|++|+===+ ..|.+|- .--++||+-+|++|.||.-
T Consensus 40 ~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~ 88 (495)
T 1wdp_A 40 LQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQA 88 (495)
T ss_dssp HHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE
Confidence 5799999999999974322 3466664 4567899999999999943
No 104
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=22.18 E-value=87 Score=26.49 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHc--Ceeeec
Q 031877 81 KLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRA--GVVVDG 128 (151)
Q Consensus 81 ~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~--GVkv~g 128 (151)
..+.++.+.|++.|++|.. .+ +...++.++..+|+. ++.|++
T Consensus 258 ~~a~~~~~aG~d~v~i~~~----~G--~~~~~~~~i~~i~~~~~~~pvi~ 301 (514)
T 1jcn_A 258 YRLDLLTQAGVDVIVLDSS----QG--NSVYQIAMVHYIKQKYPHLQVIG 301 (514)
T ss_dssp HHHHHHHHTTCSEEEECCS----CC--CSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHcCCCEEEeecc----CC--cchhHHHHHHHHHHhCCCCceEe
Confidence 3557788999999999887 22 345678999999998 888874
No 105
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=21.79 E-value=1.2e+02 Score=22.42 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCcceeEeechhhcc---ccccccchhhHHHHHHHHcC
Q 031877 74 TVVVVGQKLGSQLREIGIDNVMINLAEELS---RPANQRIMVLPLFDSVRRAG 123 (151)
Q Consensus 74 aAa~VGe~La~RLk~~Gi~~V~id~~eE~s---r~~kyr~kV~al~dSlR~~G 123 (151)
++.-||.-++.+|...|-.-|-+|.++++. .+.....++..+.+.++..|
T Consensus 21 as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (278)
T 3sx2_A 21 AARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG 73 (278)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC
Confidence 456788999999998887776677654331 11122334444555555444
No 106
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=21.73 E-value=1.6e+02 Score=22.50 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=29.7
Q ss_pred cCcccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhcc
Q 031877 8 NSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYH 57 (151)
Q Consensus 8 ~~~~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e 57 (151)
|..+|+-=++|| ..-++|+-+-. +|.|+++...+|.+.+...+
T Consensus 39 ~P~~fpgli~Rl--~~P~~t~lIF~-----SGKiv~TGakS~~~~~~a~~ 81 (182)
T 1ais_A 39 NPEEFPGIICHL--DDPKVALLIFS-----SGKLVVTGAKSVQDIERAVA 81 (182)
T ss_dssp CTTTCSSEEEEC--SSSCCEEEECT-----TSEEEEEEESSHHHHHHHHH
T ss_pred CCCccccEEEEc--CCCcEEEEEeC-----CCeEEEecCCCHHHHHHHHH
Confidence 445566656664 56677887764 59999998777777665555
No 107
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=21.70 E-value=1e+02 Score=26.82 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCcceeEeechhhcc-ccc-ccc--------------chhhHHHHHHHHcCeeee
Q 031877 80 QKLGSQLREIGIDNVMINLAEELS-RPA-NQR--------------IMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 80 e~La~RLk~~Gi~~V~id~~eE~s-r~~-kyr--------------~kV~al~dSlR~~GVkv~ 127 (151)
++| -.||+.||+.|.+..--|-. ..- -|. .-++.|++.+.++||+|+
T Consensus 148 ~~L-~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~Vi 210 (602)
T 2bhu_A 148 EKL-PYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVF 210 (602)
T ss_dssp HTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHH-HHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCEEE
Confidence 677 78999999999987654431 110 121 247899999999999986
No 108
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=21.45 E-value=23 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=22.7
Q ss_pred eEeechhhc-cccccccchhhH-HHHHHHHcCee
Q 031877 94 VMINLAEEL-SRPANQRIMVLP-LFDSVRRAGVV 125 (151)
Q Consensus 94 V~id~~eE~-sr~~kyr~kV~a-l~dSlR~~GVk 125 (151)
-.++++.|. ..=.+.|..||| |.++||++||.
T Consensus 46 f~m~Lkp~~~eEYk~~Ha~VWPEv~~~Lk~aGI~ 79 (144)
T 2qlw_A 46 FKMQLNPGMEAEYRKRHDEIWPELVDLLHQSGAS 79 (144)
T ss_dssp EEEEBCTTCHHHHHHHHHTCCHHHHHHHHHHTCE
T ss_pred EEEEcCchHHHHHHHHHHhCCHHHHHHHHHcCCe
Confidence 445555554 334456789998 77899999986
No 109
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=21.31 E-value=63 Score=26.69 Aligned_cols=48 Identities=29% Similarity=0.469 Sum_probs=31.0
Q ss_pred ccchhHHHHHHHHHHHHHHhcCccee------------EeechhhccccccccchhhHHHHHHHHcCeeee
Q 031877 69 FWDSNTVVVVGQKLGSQLREIGIDNV------------MINLAEELSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 69 ~~DakaAa~VGe~La~RLk~~Gi~~V------------~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
|.|..+|-.- ++++.+.|.+=| .++.+||+.| |.|++..|++.++.+.
T Consensus 26 ~~~~~~a~~~----a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~R-------v~pvi~~l~~~~v~iS 85 (270)
T 4hb7_A 26 FNNVETAINR----VKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNR-------VLPVVEAIVGFDVKIS 85 (270)
T ss_dssp -CHHHHHHHH----HHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHH-------HHHHHHHHTTSSSEEE
T ss_pred CCCHHHHHHH----HHHHHHCCCCEEEECCccCCCCCCCCchHHHHHH-------HHHHHHHhhcCCCeEE
Confidence 3555555443 345666776543 3466677654 8999999998877654
No 110
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=21.19 E-value=70 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCcceeEeechhhc
Q 031877 76 VVVGQKLGSQLREIGIDNVMINLAEEL 102 (151)
Q Consensus 76 a~VGe~La~RLk~~Gi~~V~id~~eE~ 102 (151)
-.+|..|+.+|...|.+-+-+|.++|.
T Consensus 9 G~~G~~la~~L~~~g~~v~vid~~~~~ 35 (218)
T 3l4b_C 9 ETTAYYLARSMLSRKYGVVIINKDREL 35 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred CHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 578999999999999998888887653
No 111
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.17 E-value=1.3e+02 Score=17.16 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=25.8
Q ss_pred hcCcceeEeechhhc-cccccccchhhHHHHHHHHcCeee
Q 031877 88 EIGIDNVMINLAEEL-SRPANQRIMVLPLFDSVRRAGVVV 126 (151)
Q Consensus 88 ~~Gi~~V~id~~eE~-sr~~kyr~kV~al~dSlR~~GVkv 126 (151)
..|+..+.+|+..+- .=.+......-.+++.+++.|.++
T Consensus 27 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~ 66 (69)
T 4a4j_A 27 VPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA 66 (69)
T ss_dssp STTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCce
Confidence 468999999987543 111122344567899999998764
No 112
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=20.74 E-value=1.2e+02 Score=26.14 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhhc-cccccccch-----------------hhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEEL-SRPANQRIM-----------------VLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~-sr~~kyr~k-----------------V~al~dSlR~~GVkv~ 127 (151)
|-++|- .|++.||++|++.+=-|- ...--|++= .+.|++.+.+.||+|+
T Consensus 150 i~~~Ld-yl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi 216 (601)
T 3edf_A 150 TIDHLD-YIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216 (601)
T ss_dssp HHHTHH-HHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHH-HHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEE
No 113
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=20.52 E-value=87 Score=24.24 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=49.3
Q ss_pred ccchhHH-HHHHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecccccccccccceeccc
Q 031877 69 FWDSNTV-VVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFC 144 (151)
Q Consensus 69 ~~DakaA-a~VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~~~~~~~~~~~~ 144 (151)
+-++..| -+||+--|+-+-..||..||.++= | .+-++=|+++||++.=.++.+-|.---.-|.|
T Consensus 61 L~ga~vADKVVGKAAA~Lmv~ggV~~VyA~VI---S---------e~Al~lL~~~GI~v~Y~~~Vp~I~NRd~tg~C 125 (151)
T 1vk9_A 61 LEGSLVIDKMVGKAAASFLLKMKPDHIHAKVI---S---------KPALKLMNEYGQSFSYDEKIPFVLGKDGKSMC 125 (151)
T ss_dssp CTTCEEEEEEECHHHHHHHHHHCCSEEEEEEE---E---------HHHHHHHHHTTCCEEEEEEESSCBCSSSSSBC
T ss_pred ccCCEehHHHHhHHHHHHHHhcChheehhHHh---h---------HHHHHHHHHcCCceeeeeecceeEccCCCCCC
Confidence 4555544 467888888888999999999975 2 35578899999999998888888654456666
No 114
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=20.42 E-value=1.4e+02 Score=17.39 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=26.5
Q ss_pred hc-CcceeEeechhhccccccccchhhHHHHHHHHcCeeee
Q 031877 88 EI-GIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 88 ~~-Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~ 127 (151)
.. |+..+.+|+..+.-. +.+..-.-.+.+.+++.|..+.
T Consensus 29 ~~~GV~~~~v~~~~~~~~-v~~~~~~~~i~~~i~~~Gy~~~ 68 (73)
T 1cc8_A 29 LEPDVSKIDISLEKQLVD-VYTTLPYDFILEKIKKTGKEVR 68 (73)
T ss_dssp TTTSEEEEEEETTTTEEE-EEESSCHHHHHHHHHTTSSCEE
T ss_pred CCCCceEEEEECCCCEEE-EEEeCCHHHHHHHHHHhCCCce
Confidence 45 999999998854411 1133445678889999997654
No 115
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=20.32 E-value=93 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCcceeEeechhhcccc------ccc-------------cchhhHHHHHHHHcCeeee
Q 031877 78 VGQKLGSQLREIGIDNVMINLAEELSRP------ANQ-------------RIMVLPLFDSVRRAGVVVD 127 (151)
Q Consensus 78 VGe~La~RLk~~Gi~~V~id~~eE~sr~------~ky-------------r~kV~al~dSlR~~GVkv~ 127 (151)
|-++|--.|++.||++|++.+--|-.-. ..| ..-.+.|++.+.++||+|+
T Consensus 24 i~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy~idp~~Gt~~d~~~lv~~~h~~Gi~Vi 92 (471)
T 1jae_A 24 IADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRIY 92 (471)
T ss_dssp HHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccccCCCCCCcccccccccccccCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4456545899999999998765443111 012 1247899999999999986
No 116
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=20.23 E-value=1e+02 Score=26.83 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=31.4
Q ss_pred HHHHHhcCcceeEeec----hhhccccccccchhhHHHHHHHHcCeeeec
Q 031877 83 GSQLREIGIDNVMINL----AEELSRPANQRIMVLPLFDSVRRAGVVVDG 128 (151)
Q Consensus 83 a~RLk~~Gi~~V~id~----~eE~sr~~kyr~kV~al~dSlR~~GVkv~g 128 (151)
-..||+.|++.|.+.+ .=|-..+.-.-.-+-.+++.++++|++|+.
T Consensus 20 l~~mk~~G~N~vR~~if~W~~~eP~~g~~d~~~ld~~ld~a~~~Gi~vil 69 (645)
T 1kwg_A 20 ARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVL 69 (645)
T ss_dssp HHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHcCCCEEEEeeechhhcCCCCCccChHHHHHHHHHHHHCCCEEEE
Confidence 4578999999999864 111112222223467899999999999985
No 117
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=20.20 E-value=1.7e+02 Score=22.43 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCcceeEeechhhc-cccccccchhhHHHHHHHHcC
Q 031877 74 TVVVVGQKLGSQLREIGIDNVMINLAEEL-SRPANQRIMVLPLFDSVRRAG 123 (151)
Q Consensus 74 aAa~VGe~La~RLk~~Gi~~V~id~~eE~-sr~~kyr~kV~al~dSlR~~G 123 (151)
++.-||.-++.+|...|..-|-+|.+..+ ..+.........+.+.++..|
T Consensus 35 as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (322)
T 3qlj_A 35 AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG 85 (322)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC
Confidence 45678999999999999766666554222 111122333444455555444
Done!