BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031880
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 274 bits (700), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 127/142 (89%), Positives = 135/142 (95%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
MSTARFIKCVTVGDGAVGKTCMLISYT NTFPTDY+PTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKL 120
TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN++KKW+PEL+HYAP +PIVLVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLREDKQFSSGHPGATPITTSQ 142
DLR+DKQF HPGA ITT+Q
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQ 142
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 272 bits (696), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 128/142 (90%), Positives = 135/142 (95%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY+PTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV KKWIPELRHYAP VPI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLREDKQFSSGHPGATPITTSQ 142
DLR+DKQF HPGA PITT+Q
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQ 142
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 268 bits (684), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/142 (88%), Positives = 134/142 (94%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDY+PTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV KKWIPEL+HYAP VPIVLVGTKL
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLREDKQFSSGHPGATPITTSQ 142
DLR+DKQF HPGA PITT Q
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQ 144
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 241 bits (616), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 126/142 (88%), Gaps = 2/142 (1%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
MS ++FIKCVTVGDGAVGKTCMLI YTSN FPTDYIPTVFDNFSANV VDG VNLGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKL 120
TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +APNVPIVLVGTKL
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLREDKQFSSGHPGATPITTSQ 142
DLR+DK + + H IT++Q
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQ 143
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 204 bits (520), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
Query: 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTA 62
T + IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTA
Sbjct: 19 TMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 78
Query: 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122
GQEDY+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDL
Sbjct: 79 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 138
Query: 123 REDKQFSS--GHPGATPITTSQ 142
R+DK TPIT Q
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQ 160
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 203 bits (516), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 203 bits (516), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 202 bits (515), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 151 DTIEKLKEKKLTPITYPQ 168
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 201 bits (512), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/143 (67%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGK C+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDT
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AGQEDY+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLD
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LREDKQFSS--GHPGATPITTSQ 142
LR+DK TPIT Q
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQ 148
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 201 bits (512), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 104/120 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VD VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S ASYENV KW PE+RH+ P+ PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N P +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 151 DTIEKLKEKKLTPITYPQ 168
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DV L+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 128 DTIEKLKEKKLTPITYPQ 145
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DV L+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 105/120 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ P+ PI+LVGTKLDLR+DK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 105/120 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ P+ PI+LVGTKLDLR+DK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DV L+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 124 DTIEKLKEKKLTPITYPQ 141
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 105/120 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ P+ PI+LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTA 62
+ + IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122
GQEDY+RLRPLSY DV L+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDL
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 123 REDKQFSS--GHPGATPITTSQ 142
R+DK TPIT Q
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQ 143
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 127 DTIEKLKEKKLTPITYPQ 144
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 199 bits (507), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N F +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 134 DTIEKLKEKKLTPITYPQ 151
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 199 bits (507), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S AS+ENV KW PE+RH+ PN PI+LVGTKLDLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFSS--GHPGATPITTSQ 142
TPIT Q
Sbjct: 151 DTIEKLKEKKLTPITYPQ 168
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
+ IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AG EDY+RLRPLSY DVFL+ FSL+S AS+ +V KW PE+RH+ PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDKQFSS--GHPGATPITTSQ 142
LR+DK TPIT Q
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQ 293
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
+ IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AG EDY+RLRPLSY DVFL+ FSL+S AS+ +V KW PE+RH+ PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDKQFSS--GHPGATPITTSQ 142
LR+DK TPIT Q
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQ 293
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
+ IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AG EDY+RLRPLSY DVFL+ FSL+S AS+ +V KW PE+RH+ PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDKQFSS--GHPGATPITTSQ 142
LR+DK TPIT Q
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQ 293
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 197 bits (500), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 105/123 (85%)
Query: 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG 63
++ IKCV VGD AVGKTC+LISYT+N FP +YIPTVFDN+SANV+VD VNLGLWDTAG
Sbjct: 7 SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 66
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123
QEDY+RLRPLSY DVFL+ FSL+S ASYENV KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 67 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 126
Query: 124 EDK 126
+DK
Sbjct: 127 DDK 129
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 103/120 (85%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGD AVGKTC+LISYT+N FP +YIPTVFDN+SANV+VD VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y+RLRPLSY DVFL+ FSL+S ASYENV KW PE+RH+ P+ PI+LVGTKLDLR+DK
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 195 bits (495), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 113/157 (71%), Gaps = 21/157 (13%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +YIPTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67 YNRLRPLSY--------------RG-----ADVFLLAFSLISKASYENVYKKWIPELRHY 107
Y+RLRPLSY RG ADVFL+ FSL+S AS+ENV KW PE+RH+
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APNVPIVLVGTKLDLREDKQFSS--GHPGATPITTSQ 142
PN PI+LVGTKLDLR+DK TPIT Q
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 162
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 178 bits (452), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 102/125 (81%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
+S + IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+D
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKL 120
TAGQEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLRED 125
DLR+D
Sbjct: 125 DLRDD 129
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 101/124 (81%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DT
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AGQEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LRED 125
LR+D
Sbjct: 121 LRDD 124
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 101/124 (81%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AGQEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRED 125
LR+D
Sbjct: 122 LRDD 125
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 101/124 (81%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AGQEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRED 125
LR+D
Sbjct: 122 LRDD 125
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 123
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 132
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 124
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 176 bits (447), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 101/122 (82%)
Query: 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG 63
++ IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAG
Sbjct: 5 SQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 64
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123
QEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR
Sbjct: 65 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 124
Query: 124 ED 125
+D
Sbjct: 125 DD 126
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 176 bits (447), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 99/119 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 176 bits (446), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 175 bits (444), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 175 bits (443), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+P VFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 100/124 (80%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGK C+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DT
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AGQEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LRED 125
LR+D
Sbjct: 126 LRDD 129
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N P++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGD AVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 98/119 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN++ V++ G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
Y+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 126
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 172 bits (435), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 102/124 (82%)
Query: 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG 63
A +KCV VGDGAVGKTC+L+SY ++ FP +Y+PTVFD+++ +V V G LGL+DTAG
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123
QEDY+RLRPLSY DVFL+ FS+++ AS++NV ++W+PEL+ YAPNVP +L+GT++DLR
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135
Query: 124 EDKQ 127
+D +
Sbjct: 136 DDPK 139
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 166 bits (420), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 96/119 (80%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
+KCV VGDGAVGKT +++SYT+N +PT+YIPT FDNFSA V VDG V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+++LRPL Y D+FLL FS++S +S++NV +KW+PE+R + P PI+LVGT+ DLRED
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 91/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR+D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 91/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR+D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 92/126 (73%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT 61
S A K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDT
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121
AGQEDY+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K D
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LREDKQ 127
LR D+
Sbjct: 125 LRNDEH 130
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 91/123 (73%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW+PE++H+ PNVPI+LV K DLR D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 128 FSS 130
+
Sbjct: 147 VRT 149
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 158 bits (400), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 89/120 (74%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD A GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 155 bits (392), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 88/120 (73%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP Y+PTVF+N+ A++ VDG V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 155 bits (392), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 88/120 (73%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD A GKTC+LI ++ + FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+R RPLSY DV L+ FS+ S S EN+ +KW PE++H+ PNVPI+LVG K DLR D+
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + FP Y+PTVF+N+ A+V VDG V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+RLRPLSY ++V L+ FS+ S ENV +KWI E+ H+ VPI+LVG K+DLR D Q
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 FSSG--HPGATPITTSQ 142
G P+T+ +
Sbjct: 132 TIEQLRQEGQQPVTSQE 148
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 86/121 (71%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
+ +K V VGDGAVGKTC+L++++ PT Y+PTVF+NFS + L LWDTAGQ
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124
E+Y+RLRPLSY +DV LL F++ ++ S++N+ KW PE++HY VLVG K+DLR+
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 140
Query: 125 D 125
D
Sbjct: 141 D 141
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 86/121 (71%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
+ +K V VGDGAVGKTC+L++++ PT Y+PTVF+NFS + L LWDTAGQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124
E+Y+RLRPLSY +DV LL F++ ++ S++N+ KW PE++HY VLVG K+DLR+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141
Query: 125 D 125
D
Sbjct: 142 D 142
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R +K V VGDG GKT +L+ + FP Y PTVF+ + N+ V G V+L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124
+DY+RLRPL Y A V LL F + S S++N++ +W PE+ H+ VPI++VG K DLR+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DKQFSSG--HPGATPIT 139
DK + G P+T
Sbjct: 153 DKSLVNKLRRNGLEPVT 169
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 1 MSTARFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL 58
M + +KC V VGD GKT +L + + FP +Y+PTVF+N++A+ +D + L L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGT 118
WDT+G Y+ +RPLSY +D L+ F + + ++V KKW E++ + PN ++LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLRED 125
K DLR D
Sbjct: 136 KSDLRTD 142
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 1 MSTARFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL 58
M + +KC V VGD GKT +L + + FP +Y+PTVF+N++A+ +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGT 118
WDT+G Y+ +RPLSY +D L+ F + + ++V KKW E++ + PN ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLRED 125
K DLR D
Sbjct: 141 KSDLRTD 147
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 7 IKC--VTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
+KC V VGD GKT +L + + FP +Y+PTVF+N++A+ +D + L LWDT+G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124
Y+ +RPLSY +D L+ F + + ++V KKW E++ + PN ++LVG K DLR
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125
Query: 125 D 125
D
Sbjct: 126 D 126
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P Y+PTVF+N++A + + V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+ +RPL Y +D LL F + + ++ KKW E+ Y P+ ++L+G K DLR D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 --FSSGHPGATPITTSQ 142
H PI+ Q
Sbjct: 133 TLMELSHQKQAPISYEQ 149
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P Y+PTVF+N++A + + V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+ +RPL Y +D LL F + + ++ KKW E+ Y P+ ++L+G K DLR D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 --FSSGHPGATPITTSQ 142
H PI+ Q
Sbjct: 132 TLMELSHQKQAPISYEQ 148
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P Y+PTVF+N++A + + V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127
+ +RPL Y +D LL F + + ++ KKW E+ Y P+ ++L+G K DLR D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 --FSSGHPGATPITTSQ 142
H PI+ Q
Sbjct: 149 TLMELSHQKQAPISYEQ 165
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y R+ YRGA LL + + +YENV ++W+ ELR +A N+ I+LVG K DLR
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 EDKQFSSGHPGATPITTSQVWVTNDN 149
H A P ++ + +N
Sbjct: 124 --------HLRAVPTDEARAFAEKNN 141
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + SY NV K+W+ E+ YA NV +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 EDK 126
K
Sbjct: 128 TKK 130
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + SY NV K+W+ E+ YA NV +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 EDK 126
K
Sbjct: 128 TKK 130
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRED 125
+ + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 K 126
K
Sbjct: 120 K 120
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA LL + + +YENV ++W+ ELR +A N+ I+LVG K DLR
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 EDK 126
K
Sbjct: 125 TKK 127
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 EDK 126
K
Sbjct: 125 TKK 127
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA LL + + +YENV ++W+ ELR +A N+ I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 EDK 126
K
Sbjct: 135 TKK 137
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 EDK 126
K
Sbjct: 144 TKK 146
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 8/131 (6%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GDG VGK+ ++ Y +N F + T+ F + ++ VDG V L +WDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTK 119
E + LR YRGAD LL FS+ + S+EN+ W E +YA + P V++G K
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENL-GNWQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 120 LDLREDKQFSS 130
+D +ED+Q ++
Sbjct: 126 VD-KEDRQVTT 135
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 EDK 126
K
Sbjct: 152 TKK 154
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 EDK 126
K
Sbjct: 127 TKK 129
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 EDK 126
K
Sbjct: 135 TKK 137
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWD 60
S A K V +G+G VGKT +++ Y N F +I T+ +F + + + G VNL +WD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTK 119
TAGQE ++ L P+ YR ++ +L + + + S++ V K W+ ELR N + + +VG K
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNK 120
Query: 120 LDLREDKQFS 129
+DL +++ S
Sbjct: 121 IDLEKERHVS 130
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWD 60
S A K V +G+G VGKT +++ Y N F +I T+ +F + + + G VNL +WD
Sbjct: 16 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 75
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTK 119
TAGQE ++ L P+ YR ++ +L + + + S++ V K W+ ELR N + + +VG K
Sbjct: 76 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNK 134
Query: 120 LDLREDKQFS 129
+DL +++ S
Sbjct: 135 IDLEKERHVS 144
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWD 60
S A K V +G+G VGKT +++ Y N F +I T+ +F + + + G VNL +WD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTK 119
TAGQE ++ L P+ YR ++ +L + + + S++ V K W+ ELR N + + +VG K
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNK 120
Query: 120 LDLREDKQFS 129
+DL +++ S
Sbjct: 121 IDLEKERHVS 130
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
+GD VGK+C+L+ + +T+ YI T+ +F + +DG T+ L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71 RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL 122
YRGA ++ + + + S+ NV K+W+ E+ YA NV +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ YI T+ +F + ++ TV L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL 122
E + + YRGA ++ + + + S++NV K+WI E+ YA NV +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDL 126
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FL FS+ S+ +++ I ++ NVP +LVG K DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 126 KQFS 129
+Q S
Sbjct: 139 RQVS 142
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FL FS+ S+ +++ I ++ NVP +LVG K DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFS 129
+Q S
Sbjct: 127 RQVS 130
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FL FS+ S+ +++ I ++ NVP +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 126 KQFS 129
+Q S
Sbjct: 125 RQVS 128
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FLL FS+ S+ +++ I ++ +P+++VG K DL E
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 KQ 127
+Q
Sbjct: 129 RQ 130
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FL FS+ S+ +++ I ++ NVP +LVG K DL +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 126 KQFS 129
+Q S
Sbjct: 135 RQVS 138
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ +T+ DYI T+ +F V +DG TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI-VLVGTKLDLR 123
E + + YRG+ ++ + + + S+ V K W+ E+ YA + + +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 EDK 126
+ +
Sbjct: 127 DKR 129
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FLL FS+ S+ +++ I ++ +P+++VG K DL E
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 KQ 127
+Q
Sbjct: 125 RQ 126
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ +T+ DYI T+ +F V +DG TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI-VLVGTKLDLR 123
E + + YRG+ ++ + + + S+ V K W+ E+ YA + + +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 EDK 126
+ +
Sbjct: 127 DKR 129
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ +R R + FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA LL + + +YENV ++W+ ELR +A N+ I+LVG K DLR
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 --------EDKQFSSGHPGATPITTSQVWVTN 147
E + F+ + G + I TS + TN
Sbjct: 127 HLRAVPTDEARAFAEKN-GLSFIETSALDSTN 157
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ +R R + FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL 121
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ +R R + FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ +T+ DYI T+ +F V +DG TV L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI-VLVGTKLDLR 123
E + + YRG+ ++ + + + S+ V K W+ E+ YA + + +LVG K DL+
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 EDK 126
+ +
Sbjct: 140 DKR 142
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA LL + + +YENV ++W+ ELR +A N+ I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 --------EDKQFSSGHPGATPITTSQVWVTN 147
E + F+ + G + I TS + TN
Sbjct: 148 HLRAVPTDEARAFAEKN-GLSFIETSALDSTN 178
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ +R R + FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL 121
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA LL + + +YENV ++W+ ELR +A N+ I LVG K DLR
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 --------EDKQFSSGHPGATPITTSQVWVTN 147
E + F+ + G + I TS + TN
Sbjct: 130 HLRAVPTDEARAFAEKN-GLSFIETSALDSTN 160
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
K + +GDG VGK+ ++ Y +N F T T+ F + ++ VDG V + +WDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKL 120
+ LR YRG+D LL FS+ S++N+ W E +YA + P V++G K+
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 121 DLREDKQFSSGHPGA 135
D+ E +Q S+ A
Sbjct: 127 DISE-RQVSTEEAQA 140
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA LL + + +YENV ++W+ ELR +A N+ I LVG K DLR
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 --------EDKQFSSGHPGATPITTSQVWVTN 147
E + F+ + G + I TS + TN
Sbjct: 124 HLRAVPTDEARAFAEKN-GLSFIETSALDSTN 154
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
K + +GDG VGK+ ++ Y +N F T T+ F + ++ VDG V + +WDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKL 120
+ LR YRG+D LL FS+ S++N+ W E +YA + P V++G K+
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 121 DLREDKQFSSGHPGA 135
D+ E +Q S+ A
Sbjct: 129 DISE-RQVSTEEAQA 142
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ +R R + FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ +R R + FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
K + VGD VGKTC+L+ + F +I TV +F V+ VDG V L +WDTAGQE
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLD 121
+ + YR A LL + + +KAS++N+ + W+ E+ YA +V ++L+G K+D
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVD 127
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
K + +GDG VGK+ ++ Y +N F + T+ F + ++ VDG V + +WDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTK 119
E + LR YRG+D LL FS+ S++N+ W E +YA + P V++G K
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNK 129
Query: 120 LDLREDKQFSSGHPGA 135
D++E +Q S+ A
Sbjct: 130 TDIKE-RQVSTEEAQA 144
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68 NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+R +R + FL FS+ S+ +++ I ++ NVP +LVG K DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFS 129
+Q S
Sbjct: 127 RQVS 130
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
IK V VG+GAVGK+ M+ Y F DY T+ D + V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+++ + YRGA +L FS + S+E + W ++ ++P LV K+DL +D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGKTC+L ++ + F + +I T+ +F + +DG + L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDLR 123
E + + YRGA +L + + ++ S++N+ + WI + H + +V +++G K D+
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 124 EDKQFSS 130
+ +Q S
Sbjct: 127 DKRQVSK 133
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGKTC+L ++ + F + +I T+ +F + +DG + L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDLRED 125
+ + YRGA +L + + ++ S++N+ + WI + H + +V +++G K D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 KQFSS 130
+Q S
Sbjct: 127 RQVSK 131
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V +G+ VGKTC++ +T FP T+ +F V ++G V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLDLR 123
E + + YR A+ +L + + + S+ +W+ E+ YA N V VLVG K+DL
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 EDKQFSS 130
E ++ S
Sbjct: 145 ERREVSQ 151
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 14/135 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F +I TV +F VV +GS+ V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR--HYAPNVP 112
+L LWDTAGQE + L +R A FLL F L S+ S+ NV + W+ +L+ Y N
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IVLVGTKLDLREDKQ 127
IVL+G K DL + ++
Sbjct: 144 IVLIGNKADLPDQRE 158
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTF---PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
K V +GD GK+ +++ + + F I F FS + V+ +TV +WDTAGQ
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 71
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL- 122
E Y+ L P+ YRGA ++ F + ++AS+E KKW+ EL+ PN+ + L G K DL
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL 130
Query: 123 ------REDKQFSSGHPGATPITTSQVWVTN 147
ED Q + G + TS TN
Sbjct: 131 DARKVTAEDAQTYAQENGLFFMETSAKTATN 161
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F +I TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR--HYAPNVP 112
+L LWDTAG E + L +R A FLL F L S+ S+ NV + W+ +L+ Y N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDKQ 127
IVL+G K DL + ++
Sbjct: 130 IVLIGNKADLPDQRE 144
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 69 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 124
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 123
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F +I TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR--HYAPNVP 112
+L LWDTAG E + L +R A FLL F L S+ S+ NV + W +L+ Y N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDKQ 127
IVL+G K DL + ++
Sbjct: 130 IVLIGNKADLPDQRE 144
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F +I TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR--HYAPNVP 112
+L LWDTAG E + L +R A FLL F L S+ S+ NV + W+ +L+ Y N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDKQ 127
IVL+G K DL + ++
Sbjct: 130 IVLIGNKADLPDQRE 144
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+ +L+ + NTF YI T+ +F V ++G V L +WDTAGQ
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124
E + + YRG ++ + + S S+ NV K+W+ E+ +V +LVG K D E
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPE 127
Query: 125 DK 126
K
Sbjct: 128 RK 129
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F +I TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR--HYAPNVP 112
+L LWDTAG E + L +R A FLL F L S+ S+ NV + W +L+ Y N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDKQ 127
IVL+G K DL + ++
Sbjct: 130 IVLIGNKADLPDQRE 144
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ +T F + T+ F A +V +DG + L +WDTAGQ
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL- 122
E + + YRGA LL + + + ++ N W+ + R H + N+ I+L+G K DL
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 123 -REDKQFSSGHPGA 135
R D + G A
Sbjct: 140 SRRDVKREEGEAFA 153
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G GK+C+L + N F D T+ F + VV V G TV L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA LL + + S+ +Y N W+ + R A PN+ ++L G K DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 EDKQ 127
+++
Sbjct: 144 PERE 147
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F D T+ F+ + ++G + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E Y + YRGA L+ + + +SYEN W+ ELR A NV + L+G K DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL- 130
Query: 124 EDKQFSSGHPGATPITTSQVWV 145
H A P S+ +
Sbjct: 131 -------AHLRAVPTEESKTFA 145
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTV-NLGLWDTAG 63
+K + +GD VGKT ++ Y ++ + Y T+ +F + V VDG V + +WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGT 118
QE + L YRGAD +L + + + +S+EN+ K W E +A P V++G
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGN 126
Query: 119 KLDLREDKQFSS 130
K+D E K+ S
Sbjct: 127 KIDAEESKKIVS 138
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 69 YHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 124
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + + ++ K W+ EL R +PN+ I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADL 122
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + + ++ K W+ EL R +PN+ I L G K DL
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADL 120
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV-----------DGSTV 54
IK + +GD VGKT +L YT F + +I TV +F VV G +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRH--YAPNVP 112
+L LWDTAG E + L +R A FLL F L ++ S+ NV + WI +L+ Y+ N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IVLVGTKLDLREDK 126
IVL G K DL + +
Sbjct: 130 IVLCGNKSDLEDQR 143
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + +V +D +TV +WDTAGQE
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ ++ K W+ EL R +P++ I L G K DL
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGNKADL 125
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 123
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGST-VNLGLWDTAGQE 65
K + +G+ +VGKT L Y +TF ++ TV +F V V L +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + ++ S+ N + W +++ Y+ N ++LVG K D+ E
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DK 126
++
Sbjct: 143 ER 144
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTA 62
A K + +GD VGK+C+L+ +T F + T+ F A ++ +DG + L +WDTA
Sbjct: 8 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTA 67
Query: 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLD 121
GQE + + YRGA LL + + + ++ N W+ + R H N+ I+L+G K D
Sbjct: 68 GQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 122 LREDKQ 127
L ++
Sbjct: 127 LESRRE 132
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV--DGSTVNLGLWDTAG 63
K V +GD VGK+ +L +T + F + T+ F+ + + + +WDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL 122
QE Y + YRGA LL + + K S+EN+ +KW+ ELR A N+ I+LVG K DL
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 R 123
+
Sbjct: 126 K 126
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 123
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + + F TDY PT+ D+++ V+D L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79 DVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLREDKQ 127
+ FLL FS+ + S+E +YK LR P++L+G K DL +Q
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ 127
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 83 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 127
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWD 60
S +R K + +GD VGKTC+ + + FP T+ +F V +DG + + LWD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61 TAGQEDYNR-LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHY--APNVPIVLVG 117
TAGQE + + + YR + + + + AS+ ++ WI E + + A ++P +LVG
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLREDKQ 127
K DLR Q
Sbjct: 135 NKCDLRSAIQ 144
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L +T F D T+ F ++ V G + L +WDTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL--- 122
+ + YRGA L+ + + +++Y N W+ + R+ PN I+L+G K DL
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 123 -----REDKQFSS 130
E KQF+
Sbjct: 136 RDVTYEEAKQFAE 148
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V VGD +VGKTC++ + + F T+ +F+ + + G V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YR A+ +LA+ + ++S+ +V WI ++R YA N+ +L+G K DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 EDKQFS 129
E ++ S
Sbjct: 148 ELREVS 153
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + ++ S+ K W+ EL R +PN+ I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL 122
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 125
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 125
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSAN-VVVDGSTVNLGLWD 60
S+ + K V GD AVGK+ L+ N F + T+ +F ++VDG L LWD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTK 119
TAGQE + + +R AD LL + + + S+ N+ ++W+ + A VPI+LVG K
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 120 LDLR-----EDKQFSSGHPG 134
D+R E ++ GH G
Sbjct: 143 ADIRDTAATEGQKCVPGHFG 162
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL 121
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL 121
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
+K + +GD VGK+C+L+ + + F +I T+ +F V ++G V L LWDTAGQ
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLDLR 123
E + + YRGA +L + + + ++ N+ K+W + +A + ++LVG K D+
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 138
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
+K + +GD VGK+C+L+ + + F +I T+ +F V ++G V L LWDTAGQE
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLDLR 123
+ + YRGA +L + + + ++ N+ K+W + +A + ++LVG K D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 125
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL 120
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG + DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL 120
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
IK V +G+ AVGK+ +++ + SN F + PT+ F + V ++ TV +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124
+ L P YR A L+ + + S+ + W+ EL A ++ I LVG K+D +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 125 D 125
+
Sbjct: 123 E 123
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
+K + +GD VGK+C+L+ + + F +I T+ +F V ++G V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLDLR 123
+ + YRGA +L + + + ++ N+ K+W + +A + ++LVG K D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 121
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 82 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 126
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F ++ PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + + F +I T+ +F V ++G V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLD 121
+ + YRGA +L + + + ++ N+ K+W + +A + ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ +++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA LL + + S+ +Y N W+ + R A N+ I+L G K DL
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 EDKQ 127
D++
Sbjct: 129 ADRE 132
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG+E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL 138
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + + F +I T+ +F V ++G V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLD 121
+ + YRGA +L + + + ++ N+ K+W + +A + ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA LL + + S+ +Y N W+ + R A N+ I+L G K DL
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 EDKQ 127
D++
Sbjct: 130 ADRE 133
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79 DVFLLAFSLISKASYE--NVYKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+ N+Y++ I ++ + +VP+VLVG K DL
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL 138
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDG-STVNLGLWDTAGQED 66
K V +G+ VGKT +L +T N F D T+ FS V+ G + V +WDTAG E
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDLRED 125
Y + YRGA LL F L +Y V ++W+ EL H + ++LVG K DL +
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTY-AVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 126 KQ 127
++
Sbjct: 131 RE 132
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWD 60
+ +R K + +GD VGKTC+ + + FP T+ +F V +DG + + LWD
Sbjct: 25 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 84
Query: 61 TAGQEDYNR-LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHY--APNVPIVLVG 117
TAGQE + + + YR + + + AS+ ++ WI E + + A ++P +LVG
Sbjct: 85 TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSL-PAWIEECKQHLLANDIPRILVG 143
Query: 118 TKLDLREDKQ 127
K DLR Q
Sbjct: 144 NKCDLRSAIQ 153
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
+K + +G+ VGK+ +L+ +T +TF + T+ +F + VDG+ L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIV--LVGTKLDLR 123
+ L P YRGA +L + + + ++ + W+ EL Y IV LVG K+D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 EDKQ 127
E+++
Sbjct: 134 ENRE 137
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDL 122
Y+ L P+ YRGA ++ + + + ++ K W+ EL R +PN+ I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADL 122
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y ++F ++ TV +F + + + L +WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + ++ S+ N + W +++ Y+ N ++LVG K D+ +
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DKQFSS 130
++ SS
Sbjct: 125 ERVVSS 130
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL 120
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTK 119
E + L YRGAD +L F + + +++ + W E A N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDKQFSSGHPGA 135
+DL E++Q ++ A
Sbjct: 127 IDL-ENRQVATKRAQA 141
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y ++F ++ TV +F V + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124
Y + YRGA FLL + + ++ S+ V + W +++ Y+ N ++LVG K DL +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DK 126
++
Sbjct: 142 ER 143
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDG-STVNLGLWDTAGQED 66
K V +G+ VGKT +L +T N F D T+ FS V+ G + V +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL-RHYAPNVPIVLVGTKLDLRED 125
Y + YRGA LL F L +Y V ++W+ EL H + ++LVG K DL +
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTY-AVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 126 KQ 127
++
Sbjct: 146 RE 147
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL 120
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL-WD 60
S R +K +GD VGK+ ++ + + F + PT+ +F V G+ ++ L WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAP-NVPIVLVGTK 119
TAGQE ++ L P+ YRG+ ++ + + + S+ + KKW+ EL+ + P N+ + + G K
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLREDKQ 127
DL + ++
Sbjct: 138 CDLSDIRE 145
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPE-LRHYAP----NVPIVLVGTK 119
E + L YRGAD +L F + + +++ + W E L +P N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDKQFSSGHPGA 135
+DL E++Q ++ A
Sbjct: 127 IDL-ENRQVATKRAQA 141
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L +T F D T+ F ++ V G + L +WDTAGQ
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL--- 122
+ + YRGA L+ + + +++Y N W+ + R+ PN I+L+G K DL
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 123 -----REDKQFSS 130
E KQF+
Sbjct: 151 RDVTYEEAKQFAE 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+ + +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 125
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL 120
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
++ + +G VGKT ++ +T +TF TV +F V + G + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124
+N + YR A +L + + K +++++ KW+ + YA + ++LVG KLD
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DKQFS--SGHPGATPIT 139
D++ + G A IT
Sbjct: 146 DREITRQQGEKFAQQIT 162
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPE-LRHYAP----NVPIVLVGTK 119
E + L YRGAD +L F + + +++ + W E L +P N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDKQFSSGHPGA 135
+D E++Q ++ A
Sbjct: 127 IDF-ENRQVATKRAQA 141
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F + PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
+ FL F++ + S+E++ Y++ I ++ + +VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL 120
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F Y+PT+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGKT ++ + +TF +Y T+ D S + +D V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPE-LRHYAPNVPIVLVGTKLDL 122
+ L P R + ++ + + ++ S+EN KWI + L +V I LVG K DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDL 118
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+PT+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAG
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL 122
QE + L P R + V ++ + + + S+ KWI ++R +V I+LVG K DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 123 REDKQFSS 130
+ +Q S+
Sbjct: 132 SDKRQVST 139
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G G VGK+ + + + F +Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLR 123
E + +R L + F L +S+ +++++ ++ LR +VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 EDK 126
+++
Sbjct: 122 DER 124
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123
E + + YRGA LL + + S+ +Y N W+ + R A N+ I+L G K DL
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 EDKQ 127
D++
Sbjct: 127 ADRE 130
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLR 123
E + +R L + F L +S+ +++++ ++ LR +VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 124 EDK 126
+++
Sbjct: 122 DER 124
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 13 GDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72
G G VGK+ +++ + TF YIPTV D + + D S L + DT G + ++
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73 LSYRGADVFLLAFSLISKASYEN---VYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS 129
LS F+L +S+ S+ S E +Y++ I E++ ++PI+LVG K D ++
Sbjct: 70 LSISKGHAFILVYSITSRQSLEELKPIYEQ-ICEIKGDVESIPIMLVGNKCDESPSREVQ 128
Query: 130 SGHPGA 135
S A
Sbjct: 129 SSEAEA 134
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLRED 125
+ L P R + V ++ + + + S++ KWI ++R +V I+LVG K DL +
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 126 KQFS--SGHPGATPIT 139
+Q + G A ++
Sbjct: 123 RQITIEEGEQRAKELS 138
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLRED 125
+ L P R + V ++ + + + S++ KWI ++R +V I+LVG K DL +
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 126 KQFS--SGHPGATPI 138
+Q S G A +
Sbjct: 122 RQVSIEEGERKAKEL 136
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLR 123
E + +R L + F L +S+ +++++ ++ LR +VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 EDK 126
+++
Sbjct: 122 DER 124
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPE-LRHYAP----NVPIVLVGTK 119
E + L YRGAD +L F + + +++ + W E L +P N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDKQFSSGHPGA 135
+DL E++Q ++ A
Sbjct: 127 IDL-ENRQVATKRAQA 141
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y ++F ++ TV +F + + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + ++ S+ N + W +++ Y+ N ++LVG K D +
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DKQFSS 130
++ SS
Sbjct: 128 ERVVSS 133
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T++ F + T+ F+ + V+ + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDL 122
E Y + YRGA L+ + + +SYEN W+ ELR A NV + L+G K DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGNKSDL 127
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Y LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YI T+ + + + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D++E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 K 126
K
Sbjct: 125 K 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YI T+ + + + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D++E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 K 126
K
Sbjct: 124 K 124
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ T+ L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL 122
QE + L P R + ++ + + + S++ KWI ++R +V I+LVG K DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 REDKQFS 129
+ +Q S
Sbjct: 124 ADKRQVS 130
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + + F +DY PT+ D+++ VDG L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79 DVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLREDKQ 127
FLL F++ + S+ V K + LR + P+VLVG K DL +Q
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YI T+ + + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D++E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 K 126
K
Sbjct: 132 K 132
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL 122
E + L P R + V ++ + + + S++ KWI ++R +V I+LVG K DL
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 REDKQFS 129
+ +Q S
Sbjct: 124 ADKRQVS 130
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTA 62
+ R K V +G VGK+ + + + F Y PT+ D++ V VD L + DTA
Sbjct: 2 SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTA 61
Query: 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLD 121
G E + +R L + F L +S+ +++++ ++ LR +VP++LVG K D
Sbjct: 62 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 122 LREDK 126
L +++
Sbjct: 122 LEDER 126
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL 122
E + L P R + V ++ + + + S++ KWI ++R +V I+LVG K DL
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 123 REDKQFS 129
+ +Q S
Sbjct: 134 ADKRQVS 140
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL-WDTAG 63
R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL 122
QE + L P+ YRG+ ++ + + + ++ + K W+ ELR H P++ + + G K DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 123 REDKQ 127
+ ++
Sbjct: 123 TDVRE 127
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ L Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 74 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAG E
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 68 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 126
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
M+ + +K G VGK+ +++ + + F +Y PT+ + +D V++ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGT 118
TAGQED + R R + F+L + + + S+E V K + E++ NV ++LVG
Sbjct: 83 TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLREDKQFSS--GHPGATPITTS 141
K DL +Q S+ G AT + +
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACA 165
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ V + + +WDTAG E
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ T+ L LWDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDL 122
E + L P R + ++ + + + S++ KWI ++R +V I+LVG K DL
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 123 REDKQFS 129
+ +Q S
Sbjct: 131 ADKRQVS 137
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + Y+ T+ V + + +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
+ LR Y A ++ F + S+ +Y+NV W +L N+PIVL G K+D+++ K
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL-WD 60
S R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTK 119
TAG E + L P+ YRG+ ++ + + + ++ + K W+ ELR H P++ + + G K
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLREDKQ 127
DL + ++
Sbjct: 121 CDLTDVRE 128
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + + + + TF Y PT+ D + + VD S L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
F+L +SL+++ S++++ + I ++ Y VP++LVG K+DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
M R+ K V +G VGKT + + F Y PTV + +S V + +L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61 TAGQEDYNRLRPLSY-RGADVFLLAFSLISKASY---ENVYKKWIPELRHYAPNVPIVLV 116
TAGQ++Y+ L P S+ G ++L +S+ S S+ E++Y+K H VP+VLV
Sbjct: 79 TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL--HEGHGKTRVPVVLV 135
Query: 117 GTKLDLREDKQFSS 130
G K DL +++ +
Sbjct: 136 GNKADLSPEREVQA 149
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F DY PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
D FL+ +S+ KAS+E+V + + I ++ + P++LV K+DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL 135
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F DY PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
D FL+ +S+ KAS+E+V + + I ++ + P++LV K+DL
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL 130
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ +++ + TF YIPT+ D + + D S L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79 DVFLLAFSLISKASYEN---VYKKWIPELRHYAPNVPIVLVGTKLD 121
F+L FS+ SK S E +Y K I +++ ++P++LVG K D
Sbjct: 81 HAFILVFSVTSKQSLEELGPIY-KLIVQIKGSVEDIPVMLVGNKCD 125
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F +Y PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
D FL+ +S+ KAS+E+V + + I ++ + P++LV K+DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL 135
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 19 KTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F +Y PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFLLAFSLISKASYENV--YKKWIPELRHYAPNVPIVLVGTKLDL 122
D FL+ +S+ KAS+E+V + + I ++ + P++LV K+DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDL 135
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 65
K +GDG VGKT + F +Y TV N + D G+ + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN-VPIVLVGTKLDLRE 124
L+ + Y GA +L F + S+ + +N+ +W+ E + N PIV+ K+D++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DKQFSS 130
++ S
Sbjct: 132 RQKISK 137
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
M ++ K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENVYKKWIPELRHYAPNV--PIVLV 116
TAGQ++Y+ + P +Y D+ ++L +S+ S S+E V K +L V PI+LV
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLREDKQFS 129
G K DL ++ S
Sbjct: 118 GNKKDLHMERVIS 130
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWD 60
M ++ K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENVYKKWIPELRHYAPNV--PIVLV 116
TAGQ++Y+ + P +Y D+ ++L +S+ S S+E V K +L V PI+LV
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLREDKQFS 129
G K DL ++ S
Sbjct: 118 GNKKDLHMERVIS 130
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68 NRLRPLSYRGADV--FLLAFSLISKASYENVYKKWIPELRHYAPNV--PIVLVGTKLDLR 123
+ + P +Y D+ ++L +S+ S S+E V K +L V PI+LVG K DL
Sbjct: 63 S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 124 EDKQFS 129
++ S
Sbjct: 120 MERVIS 125
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGS-TVNLGLW 59
S R +K V +GDGA GKT + + TF Y T+ D F + + G+ V L +W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKW---IPELRHYAPNVPIV-L 115
D GQ ++ GA LL + + + S+EN+ + W + ++ + P+V L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKLDLRE 124
VG K+DL
Sbjct: 121 VGNKIDLEH 129
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K +G +VGK+ + I + F PT+ + F+ + V+G +L L DTAGQ++Y
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 68 NRLRPLSYRGADV--FLLAFSLISKASYENVYKKWIPELRHYAPNV--PIVLVGTKLDLR 123
+ + P +Y D+ ++L +S+ S S+E V K +L V PI+LVG K DL
Sbjct: 66 S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 124 EDKQFS 129
++ S
Sbjct: 123 MERVIS 128
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 6 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYIPTVFDNFSANVVVDGST---VNLGLWD 60
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTK 119
G+ ++ L + D +L+ +S+ +AS+E + I R ++PI+LVG K
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLREDKQFSSGHPGATPI 138
DL ++ S A +
Sbjct: 124 SDLVRXREVSVSEGRAXAV 142
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI 113
+ +WDTAGQE Y + PL YRGA ++ F IS ++ + K W+ +L+ + N I
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYII 150
Query: 114 VLVGTKLD 121
+LV K+D
Sbjct: 151 ILVANKID 158
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 6 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYIPTVFDNFSANVVVDGST---VNLGLWD 60
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTK 119
G+ ++ L + D +L+ +S+ +AS+E + I R ++PI+LVG K
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLREDKQFSSGHPGATPI 138
DL ++ S A +
Sbjct: 124 SDLVRXREVSVSEGRAXAV 142
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 6 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYIPTVFDNFSANVVVDGST---VNLGLWD 60
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + + L +W+
Sbjct: 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTK 119
G+ ++ L + D +L+ +S+ +AS+E + I R ++PI+LVG K
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 120 LDLREDKQFSSGHPGATPI 138
DL ++ S A +
Sbjct: 155 SDLVRCREVSVSEGRACAV 173
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 6 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYIPTVFDNFSANVVVDGST---VNLGLWD 60
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTK 119
G+ ++ L + D +L+ +S+ +AS+E + I R ++PI+LVG K
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLREDKQFSSGHPGATPI 138
DL ++ S A +
Sbjct: 124 SDLVRCREVSVSEGRACAV 142
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDT--AGQE 65
+ V +GD VGKT + + + D + + VDG L + DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVGTKLDLRE 124
D + + +G +++ +S+ + S+E+ + I R H A +VPI+LVG K DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 125 DKQFS 129
++ S
Sbjct: 126 CREVS 130
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT-VFDNFSANVVVDGSTVNLGLWDTAGQ 64
K + VG+ VGK+ + ++ + + P D + ++VD V L ++D Q
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 65 EDYNR-LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN--VPIVLVGTKLD 121
D LR + D FL+ FS+ + S+ V + + LR P+ +P++LVG K D
Sbjct: 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 141
Query: 122 LREDKQFS 129
L ++ S
Sbjct: 142 LARSREVS 149
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVL 115
L +WD AG+E++ P ++L + L + + K W+ ++ A + P++L
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 116 VGTKLDLREDKQ 127
VGT LD+ ++KQ
Sbjct: 116 VGTHLDVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVL 115
L +WD AG+E++ P ++L + L + + K W+ ++ A + P++L
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 116 VGTKLDLREDKQ 127
VGT LD+ ++KQ
Sbjct: 118 VGTHLDVSDEKQ 129
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY---IPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
K + VG+ VGK+ + + T D+ + D + ++VD V L ++D Q
Sbjct: 4 KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65 EDYNR-LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN--VPIVLVGTKLD 121
D L+ + D FL+ FS+ + S+ V + + LR P+ +P++LVG K D
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 122 LREDKQFS 129
L ++ S
Sbjct: 121 LARSREVS 128
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
+ +G GK+ + + + + F ++Y P + D +S+ VD V+L + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 67 -YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAP----NVPIVLVGTKLD 121
N R L++ A FL+ +S + + ++ L +A ++P +L+G KLD
Sbjct: 82 PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 122 LREDKQFSSG 131
+ + +Q +
Sbjct: 139 MAQYRQVTKA 148
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-IPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
K + +G+ VGK+ + ++ + + D + ++VD V L ++D Q D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 67 YNR-LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLR 123
L+ + D FL+ FS+ + S+ V + + LR P ++P++LVG K DL
Sbjct: 74 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 124 EDKQFS 129
++ S
Sbjct: 133 RSREVS 138
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYIPTV-FDNFSANVVVDGSTVN--LGLWDTA 62
K VG+ VGK+ ++ +TS + F DY T + A V + +TV+ L L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN----VPIVLVGT 118
G + Y + G +L F + S S+E+ K W L+ P+ + VLV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 119 KLDL 122
K DL
Sbjct: 141 KTDL 144
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 1 MSTARFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL 58
MS K + +G VGK+ + + + + +D ++VVDG +L +
Sbjct: 2 MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMV 58
Query: 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELR-HYAPNVPIVLVG 117
+D Q+ L D +++ +S+ K S+E + + R +VPI+LVG
Sbjct: 59 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 118
Query: 118 TKLDLREDKQFS 129
K DL ++ S
Sbjct: 119 NKSDLVRSREVS 130
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 43 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIP 102
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E + +
Sbjct: 43 YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 102
Query: 103 ELR-HYAPNVPIVLVGTKLDLREDKQFS 129
R +VPI+LVG K DL ++ S
Sbjct: 103 LRRARQTDDVPIILVGNKSDLVRSREVS 130
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 43 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIP 102
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E + +
Sbjct: 38 YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 97
Query: 103 ELR-HYAPNVPIVLVGTKLDLREDKQFS 129
R +VPI+LVG K DL ++ S
Sbjct: 98 LRRARQTDDVPIILVGNKSDLVRSREVS 125
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 1 MSTARFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL 58
MS+ K + +G GK+ M +I + F T + D +++ G+ + L L
Sbjct: 1 MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNL 59
Query: 59 WDTAGQ----EDY-NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYAPNV 111
WD GQ E+Y + + ++ V + F + S +++ + K + +LR Y+P+
Sbjct: 60 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 119
Query: 112 PIVLVGTKLDL 122
I ++ K+DL
Sbjct: 120 KIFVLLHKMDL 130
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
VG GKT + S F D IPTV F+ V G+ V + +WD GQ + +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMW 84
Query: 72 PLSYRGADVFLLAFSLISKASYE-------NVYKKWIPELRHYAPNVPIVLVGTKLDL 122
RG + + + E N+ K P+L+ +P++++G K DL
Sbjct: 85 ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
VG GKT + S F D IPTV F+ + G+ V + LWD GQ + +
Sbjct: 37 VGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMW 93
Query: 72 PLSYRGADVFLLAFSL-------ISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122
RG + SK N+ K P+L+ +P++++G K DL
Sbjct: 94 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 145
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
VG GKT + S F D IPTV F+ + G+ V + LWD GQ + +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMW 84
Query: 72 PLSYRGADVFLLAFSL-------ISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122
RG + SK N+ K P+L+ +P++++G K DL
Sbjct: 85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.9 bits (76), Expect = 0.035, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 21/128 (16%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGL-------- 58
IK +GDG GKT +L TF P NVV + GL
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 59 -----WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI 113
WD GQE + + V++L L S+ Y W+ + Y P+
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLL--LDSRTDSNKHY--WLRHIEKYGGKSPV 153
Query: 114 VLVGTKLD 121
++V K+D
Sbjct: 154 IVVMNKID 161
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 56 LGLWDTAGQ----EDY-NRLRPLSYRGADVFLLAFSLISKASYENV--YKKWIPELRHYA 108
L LWD GQ E+Y + + ++ V + F + S +++ + K + +LR Y+
Sbjct: 54 LNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 113
Query: 109 PNVPIVLVGTKLDL 122
P+ I ++ K DL
Sbjct: 114 PDAKIFVLLHKXDL 127
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
+ +++ LWD AGQE +R L G D F
Sbjct: 144 AALDIALWDIAGQEAGKSIRDLLGGGVDSF 173
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
+ +++ LWD AGQE +R L G D F
Sbjct: 124 AALDIALWDIAGQEAGKSIRDLLGGGVDSF 153
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 95 NVYKKWIPELRHYAPNVPIVLVGTKLDL 122
NV+K IP++ Y+PN I++V +D+
Sbjct: 116 NVFKFIIPQIVKYSPNCIIIVVSNPVDI 143
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 100 WIPELRHYAPNVPIVLVGTKLDL 122
+IP L +A + PI+LVG K DL
Sbjct: 88 FIPGLPRFAADNPILLVGNKADL 110
>pdb|1TM0|A Chain A, Crystal Structure Of The Putative Proline Racemase From
Brucella Melitensis, Northeast Structural Genomics
Target Lr31
pdb|1TM0|B Chain B, Crystal Structure Of The Putative Proline Racemase From
Brucella Melitensis, Northeast Structural Genomics
Target Lr31
Length = 350
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 115 LVGTKLDLREDKQFS-SGHPGATPITTSQVWVTN 147
++GT+ R DK G P +PI + + WVT
Sbjct: 283 VLGTEFHCRLDKVLELGGKPAISPIISGRAWVTG 316
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
V +G G+ L + T D++P V G L+ GQ YN R
Sbjct: 38 VPEGRKGEXVSLATEDERTLFFDFLPLDIGE------VKGFKTRFHLYTVPGQVFYNASR 91
Query: 72 PLSYRGAD-VFLLAFS----LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122
L RG D + +A S L + A ++ + E +VPIV+ K DL
Sbjct: 92 KLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLDDVPIVIQVNKRDL 147
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 100 WIPELRHYAPNVPIVLVGTKLDL 122
W+P L + N ++LVG K DL
Sbjct: 86 WLPGLHRFVGNNKVLLVGNKADL 108
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
V +G G+ L + T D++P V G L+ GQ YN R
Sbjct: 38 VPEGRKGEMVSLATEDERTLFFDFLPLDIGE------VKGFKTRFHLYTVPGQVFYNASR 91
Query: 72 PLSYRGAD-VFLLAFS----LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122
L RG D + +A S L + A ++ + E +VPIV+ K DL
Sbjct: 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,894,189
Number of Sequences: 62578
Number of extensions: 200757
Number of successful extensions: 934
Number of sequences better than 100.0: 312
Number of HSP's better than 100.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 313
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)