Query 031880
Match_columns 151
No_of_seqs 133 out of 1208
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 9.4E-40 2E-44 217.9 12.6 144 4-148 7-160 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.8E-36 3.8E-41 201.6 12.6 146 3-149 2-156 (200)
3 KOG0098 GTPase Rab2, small G p 100.0 1.5E-35 3.3E-40 196.1 11.0 147 1-148 1-156 (216)
4 KOG0078 GTP-binding protein SE 100.0 4.1E-35 8.9E-40 198.1 12.7 145 3-148 9-162 (207)
5 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.2E-34 9.2E-39 195.2 15.4 145 3-147 2-166 (182)
6 cd04133 Rop_like Rop subfamily 100.0 5.9E-34 1.3E-38 193.5 14.9 142 7-148 2-161 (176)
7 cd01875 RhoG RhoG subfamily. 100.0 6.5E-34 1.4E-38 195.8 15.1 144 5-148 2-165 (191)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.5E-34 5.5E-39 191.6 12.2 144 4-148 20-173 (221)
9 KOG0079 GTP-binding protein H- 100.0 7.2E-35 1.6E-39 186.5 8.6 144 5-149 7-158 (198)
10 cd04131 Rnd Rnd subfamily. Th 100.0 1.3E-33 2.9E-38 192.2 15.4 142 6-147 1-162 (178)
11 cd04121 Rab40 Rab40 subfamily. 100.0 2E-33 4.3E-38 192.9 14.0 144 4-148 4-155 (189)
12 KOG0093 GTPase Rab3, small G p 100.0 5.9E-34 1.3E-38 182.1 10.3 143 5-148 20-171 (193)
13 KOG0080 GTPase Rab18, small G 100.0 8.3E-34 1.8E-38 183.9 10.2 143 5-148 10-162 (209)
14 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.9E-33 1.7E-37 188.0 14.7 142 7-148 2-163 (175)
15 cd04120 Rab12 Rab12 subfamily. 100.0 3.1E-33 6.8E-38 193.6 12.9 141 7-148 1-151 (202)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.6E-33 1.6E-37 194.9 14.8 142 5-146 12-173 (232)
17 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.4E-33 1.2E-37 187.4 12.6 144 4-148 12-164 (222)
18 KOG0394 Ras-related GTPase [Ge 100.0 4.7E-33 1E-37 184.0 11.6 144 4-148 7-166 (210)
19 cd01871 Rac1_like Rac1-like su 100.0 4.3E-32 9.2E-37 184.2 14.8 142 7-148 2-163 (174)
20 KOG0095 GTPase Rab30, small G 100.0 2.8E-33 6.1E-38 179.7 8.0 143 5-148 6-157 (213)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.9E-32 6.4E-37 184.7 13.2 143 5-148 1-152 (172)
22 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.1E-32 1.3E-36 189.4 14.8 141 6-146 1-161 (222)
23 cd04134 Rho3 Rho3 subfamily. 100.0 1.4E-31 3.1E-36 183.8 15.0 142 7-148 1-162 (189)
24 cd04136 Rap_like Rap-like subf 100.0 2.9E-31 6.2E-36 177.7 13.2 142 6-148 1-151 (163)
25 PTZ00369 Ras-like protein; Pro 100.0 4.2E-31 9E-36 181.5 14.3 144 4-148 3-155 (189)
26 cd04122 Rab14 Rab14 subfamily. 100.0 3.5E-31 7.6E-36 178.2 13.6 142 6-148 2-152 (166)
27 smart00174 RHO Rho (Ras homolo 100.0 7.2E-31 1.6E-35 177.7 14.1 140 9-148 1-160 (174)
28 PLN03071 GTP-binding nuclear p 100.0 7.4E-31 1.6E-35 184.1 14.2 144 4-148 11-160 (219)
29 cd04117 Rab15 Rab15 subfamily. 100.0 1E-30 2.2E-35 175.3 13.6 141 7-148 1-150 (161)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 7.2E-31 1.6E-35 176.2 12.6 142 6-148 1-151 (164)
31 cd04176 Rap2 Rap2 subgroup. T 100.0 1.3E-30 2.8E-35 174.8 13.0 142 6-148 1-151 (163)
32 cd04140 ARHI_like ARHI subfami 100.0 1.6E-30 3.4E-35 174.9 13.3 141 7-148 2-153 (165)
33 cd01867 Rab8_Rab10_Rab13_like 100.0 2E-30 4.3E-35 174.7 13.4 143 5-148 2-153 (167)
34 KOG0086 GTPase Rab4, small G p 100.0 5.4E-31 1.2E-35 169.7 10.0 144 4-148 7-159 (214)
35 cd04144 Ras2 Ras2 subfamily. 100.0 8.1E-31 1.8E-35 180.2 11.7 140 8-148 1-151 (190)
36 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.4E-30 7.3E-35 174.6 14.6 142 7-148 1-162 (173)
37 PF00071 Ras: Ras family; Int 100.0 1.1E-30 2.4E-35 174.9 11.5 139 8-147 1-148 (162)
38 cd04132 Rho4_like Rho4-like su 100.0 2.6E-30 5.7E-35 177.0 13.6 142 7-148 1-155 (187)
39 cd04127 Rab27A Rab27a subfamil 100.0 3E-30 6.5E-35 175.6 13.7 144 4-148 2-165 (180)
40 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.2E-30 6.9E-35 178.7 13.8 141 7-148 1-156 (201)
41 cd00877 Ran Ran (Ras-related n 100.0 6.2E-30 1.3E-34 172.4 14.4 141 7-148 1-147 (166)
42 cd01865 Rab3 Rab3 subfamily. 100.0 6.2E-30 1.4E-34 172.0 14.1 141 7-148 2-151 (165)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.6E-30 1.2E-34 172.2 13.8 142 6-148 2-152 (166)
44 cd04106 Rab23_lke Rab23-like s 100.0 4.6E-30 1E-34 171.7 13.3 141 7-148 1-151 (162)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.5E-30 1.2E-34 173.3 13.2 140 8-148 2-153 (170)
46 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6.8E-30 1.5E-34 171.1 13.4 142 6-148 2-152 (164)
47 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.4E-30 1.4E-34 176.9 13.6 123 7-130 1-149 (202)
48 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.1E-30 1.3E-34 170.8 12.9 142 6-148 1-150 (162)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.4E-30 9.6E-35 175.5 12.2 140 7-148 1-154 (182)
50 cd04135 Tc10 TC10 subfamily. 100.0 1.6E-29 3.6E-34 171.0 14.6 142 7-148 1-162 (174)
51 smart00173 RAS Ras subfamily o 100.0 5.8E-30 1.2E-34 171.7 12.3 141 7-148 1-150 (164)
52 cd04110 Rab35 Rab35 subfamily. 100.0 1.7E-29 3.6E-34 174.9 14.7 143 4-147 4-154 (199)
53 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-29 2.5E-34 170.2 13.2 141 7-148 1-146 (161)
54 cd01873 RhoBTB RhoBTB subfamil 100.0 2.1E-29 4.5E-34 173.8 14.5 141 6-148 2-184 (195)
55 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-29 2.5E-34 170.3 12.8 141 7-148 1-155 (168)
56 cd01864 Rab19 Rab19 subfamily. 100.0 2.8E-29 6E-34 168.7 14.4 143 5-148 2-154 (165)
57 cd01868 Rab11_like Rab11-like. 100.0 1.9E-29 4.2E-34 169.3 13.6 143 5-148 2-153 (165)
58 cd04116 Rab9 Rab9 subfamily. 100.0 6E-29 1.3E-33 167.8 15.8 143 3-147 2-158 (170)
59 KOG0395 Ras-related GTPase [Ge 100.0 5.1E-30 1.1E-34 176.4 10.6 143 5-148 2-153 (196)
60 cd04125 RabA_like RabA-like su 100.0 2.3E-29 5E-34 172.6 13.8 141 7-148 1-150 (188)
61 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.6E-29 7.9E-34 169.1 14.6 140 5-145 1-151 (170)
62 cd04143 Rhes_like Rhes_like su 100.0 1.8E-29 3.8E-34 179.7 13.5 141 7-148 1-159 (247)
63 cd04109 Rab28 Rab28 subfamily. 100.0 1.8E-29 3.8E-34 176.7 13.1 141 7-148 1-154 (215)
64 PLN03110 Rab GTPase; Provision 100.0 2.9E-29 6.2E-34 175.7 13.9 143 5-148 11-162 (216)
65 cd01870 RhoA_like RhoA-like su 100.0 5E-29 1.1E-33 168.8 14.4 143 6-148 1-163 (175)
66 cd04103 Centaurin_gamma Centau 100.0 2.7E-29 5.8E-34 168.1 12.7 135 7-148 1-147 (158)
67 smart00176 RAN Ran (Ras-relate 100.0 2.5E-29 5.3E-34 173.9 12.7 135 12-148 1-142 (200)
68 cd04142 RRP22 RRP22 subfamily. 100.0 5.9E-29 1.3E-33 172.0 14.1 141 7-148 1-162 (198)
69 cd04113 Rab4 Rab4 subfamily. 100.0 9E-29 1.9E-33 165.5 13.5 141 7-148 1-150 (161)
70 cd00157 Rho Rho (Ras homology) 100.0 1.3E-28 2.9E-33 165.9 14.3 142 7-148 1-161 (171)
71 cd04146 RERG_RasL11_like RERG/ 100.0 4.3E-29 9.4E-34 167.8 11.9 138 8-146 1-149 (165)
72 cd01866 Rab2 Rab2 subfamily. 100.0 1.1E-28 2.3E-33 166.5 13.8 143 5-148 3-154 (168)
73 KOG0091 GTPase Rab39, small G 100.0 7.2E-30 1.6E-34 166.0 7.6 144 5-149 7-162 (213)
74 PLN03108 Rab family protein; P 100.0 1E-28 2.2E-33 172.3 13.9 147 1-148 1-156 (210)
75 cd04177 RSR1 RSR1 subgroup. R 100.0 6.1E-29 1.3E-33 167.6 12.4 142 6-148 1-152 (168)
76 cd04111 Rab39 Rab39 subfamily. 100.0 1E-28 2.2E-33 172.4 13.4 143 5-148 1-154 (211)
77 KOG0088 GTPase Rab21, small G 100.0 1.2E-29 2.5E-34 164.4 7.4 143 4-147 11-162 (218)
78 cd04112 Rab26 Rab26 subfamily. 100.0 1.2E-28 2.7E-33 169.5 13.0 141 7-148 1-151 (191)
79 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.3E-28 5.1E-33 163.9 13.4 141 7-148 1-152 (164)
80 cd04118 Rab24 Rab24 subfamily. 100.0 2.2E-28 4.9E-33 168.3 13.7 141 7-148 1-154 (193)
81 KOG0393 Ras-related small GTPa 100.0 2.6E-29 5.7E-34 170.3 7.6 122 4-125 2-124 (198)
82 cd01892 Miro2 Miro2 subfamily. 100.0 7E-28 1.5E-32 162.8 14.3 142 4-147 2-153 (169)
83 KOG0081 GTPase Rab27, small G 100.0 1.8E-30 3.9E-35 168.3 1.6 143 5-148 8-169 (219)
84 cd04126 Rab20 Rab20 subfamily. 100.0 3.4E-28 7.3E-33 170.3 12.8 113 7-124 1-114 (220)
85 cd01861 Rab6 Rab6 subfamily. 100.0 4.7E-28 1E-32 161.9 13.0 141 7-148 1-150 (161)
86 smart00175 RAB Rab subfamily o 100.0 7.4E-28 1.6E-32 161.2 13.7 140 7-147 1-149 (164)
87 PLN00023 GTP-binding protein; 100.0 1.1E-27 2.3E-32 174.0 15.0 122 3-125 18-166 (334)
88 cd01860 Rab5_related Rab5-rela 100.0 1.4E-27 3.1E-32 159.8 13.9 142 6-148 1-151 (163)
89 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.4E-28 1.2E-32 162.6 11.8 132 9-144 2-144 (164)
90 cd04129 Rho2 Rho2 subfamily. 100.0 1.3E-27 2.8E-32 163.9 13.7 143 6-148 1-161 (187)
91 cd04148 RGK RGK subfamily. Th 100.0 7.7E-28 1.7E-32 169.0 12.6 139 7-148 1-151 (221)
92 KOG0097 GTPase Rab14, small G 100.0 2.6E-28 5.6E-33 155.7 8.8 144 4-148 9-161 (215)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 6.5E-30 1.4E-34 161.4 1.3 139 10-149 1-149 (192)
94 cd01893 Miro1 Miro1 subfamily. 100.0 1.3E-27 2.8E-32 160.9 12.6 141 7-148 1-152 (166)
95 PLN03118 Rab family protein; P 100.0 3.1E-27 6.8E-32 164.8 14.0 143 5-148 13-165 (211)
96 cd01862 Rab7 Rab7 subfamily. 100.0 3.6E-27 7.9E-32 159.0 13.7 141 7-148 1-155 (172)
97 cd04149 Arf6 Arf6 subfamily. 100.0 1.3E-27 2.8E-32 161.4 11.2 141 4-148 7-158 (168)
98 cd04139 RalA_RalB RalA/RalB su 100.0 3.3E-27 7.2E-32 157.9 12.6 141 7-148 1-150 (164)
99 cd01863 Rab18 Rab18 subfamily. 100.0 5.2E-27 1.1E-31 156.9 13.5 141 7-148 1-150 (161)
100 cd04114 Rab30 Rab30 subfamily. 100.0 1.1E-26 2.3E-31 156.5 15.1 147 1-148 1-157 (169)
101 PTZ00132 GTP-binding nuclear p 99.9 8.4E-27 1.8E-31 163.1 14.3 146 1-147 4-155 (215)
102 cd04123 Rab21 Rab21 subfamily. 99.9 1E-26 2.2E-31 155.2 13.9 140 7-147 1-149 (162)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.7E-27 7.9E-32 157.8 10.8 137 7-148 1-149 (159)
104 smart00177 ARF ARF-like small 99.9 5E-27 1.1E-31 159.4 11.4 140 4-148 11-162 (175)
105 cd04147 Ras_dva Ras-dva subfam 99.9 1.6E-26 3.4E-31 159.8 13.2 140 8-148 1-151 (198)
106 PLN00223 ADP-ribosylation fact 99.9 9.1E-27 2E-31 159.0 11.8 139 4-147 15-165 (181)
107 cd00876 Ras Ras family. The R 99.9 1.7E-26 3.8E-31 153.7 12.2 140 8-148 1-149 (160)
108 PTZ00133 ADP-ribosylation fact 99.9 2E-26 4.3E-31 157.5 11.2 141 4-148 15-166 (182)
109 cd04137 RheB Rheb (Ras Homolog 99.9 4.8E-26 1E-30 154.9 12.9 140 7-147 2-150 (180)
110 cd00154 Rab Rab family. Rab G 99.9 1.3E-25 2.8E-30 148.8 13.1 140 7-147 1-149 (159)
111 cd04154 Arl2 Arl2 subfamily. 99.9 1.2E-25 2.6E-30 152.3 12.8 141 3-148 11-163 (173)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.8E-25 3.9E-30 152.8 12.9 142 5-148 2-158 (183)
113 cd04158 ARD1 ARD1 subfamily. 99.9 4E-26 8.7E-31 154.1 9.6 136 8-148 1-149 (169)
114 cd04157 Arl6 Arl6 subfamily. 99.9 1.2E-25 2.7E-30 150.2 10.0 137 8-148 1-152 (162)
115 PF08477 Miro: Miro-like prote 99.9 5E-25 1.1E-29 140.6 12.4 114 8-121 1-119 (119)
116 cd04161 Arl2l1_Arl13_like Arl2 99.9 7.6E-25 1.6E-29 147.7 12.4 133 8-145 1-148 (167)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 7.7E-25 1.7E-29 148.5 11.4 140 4-148 13-164 (174)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.4E-24 3.1E-29 144.9 12.3 137 8-148 1-150 (160)
119 cd04151 Arl1 Arl1 subfamily. 99.9 1.5E-24 3.3E-29 144.8 11.2 137 8-148 1-148 (158)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.5E-24 7.5E-29 142.8 10.3 136 8-148 1-148 (158)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.1E-23 2.5E-28 141.4 11.4 137 8-148 1-157 (167)
122 COG1100 GTPase SAR1 and relate 99.9 2.5E-23 5.4E-28 145.6 13.0 123 4-126 3-127 (219)
123 cd04159 Arl10_like Arl10-like 99.9 2.3E-23 5E-28 138.1 11.9 136 9-148 2-149 (159)
124 cd00879 Sar1 Sar1 subfamily. 99.9 1.6E-23 3.4E-28 143.7 10.6 116 4-124 17-134 (190)
125 KOG4252 GTP-binding protein [S 99.9 1.9E-25 4.1E-30 147.6 -0.5 143 5-148 19-169 (246)
126 smart00178 SAR Sar1p-like memb 99.9 4.5E-23 9.6E-28 141.1 11.2 116 4-124 15-132 (184)
127 TIGR00231 small_GTP small GTP- 99.9 3.1E-22 6.7E-27 132.2 12.5 142 6-147 1-151 (161)
128 cd01890 LepA LepA subfamily. 99.9 1.2E-22 2.6E-27 138.0 9.0 137 8-148 2-165 (179)
129 PF00025 Arf: ADP-ribosylation 99.9 8.8E-22 1.9E-26 133.7 11.8 118 3-124 11-129 (175)
130 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-21 3.2E-26 131.3 12.5 138 8-148 2-156 (168)
131 cd04105 SR_beta Signal recogni 99.9 1.5E-21 3.3E-26 135.5 11.5 117 8-124 2-123 (203)
132 cd01898 Obg Obg subfamily. Th 99.9 3.2E-21 6.9E-26 129.8 11.0 138 8-147 2-158 (170)
133 PTZ00099 rab6; Provisional 99.9 3E-21 6.4E-26 131.2 10.8 119 29-148 3-130 (176)
134 KOG0073 GTP-binding ADP-ribosy 99.9 5.6E-21 1.2E-25 124.6 11.1 117 3-123 13-130 (185)
135 cd01878 HflX HflX subfamily. 99.9 4.3E-21 9.2E-26 133.2 11.2 141 4-148 39-193 (204)
136 cd04155 Arl3 Arl3 subfamily. 99.9 3.9E-21 8.5E-26 129.8 10.6 117 4-125 12-130 (173)
137 cd04171 SelB SelB subfamily. 99.9 3E-21 6.4E-26 129.0 9.1 133 7-147 1-153 (164)
138 KOG3883 Ras family small GTPas 99.9 1.1E-20 2.5E-25 122.0 11.1 125 5-130 8-138 (198)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 5.9E-21 1.3E-25 131.6 10.5 138 7-148 3-170 (194)
140 cd00882 Ras_like_GTPase Ras-li 99.8 3.8E-20 8.3E-25 120.9 12.0 136 11-147 1-147 (157)
141 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.5E-20 1.2E-24 121.9 12.8 133 7-147 2-144 (157)
142 TIGR03156 GTP_HflX GTP-binding 99.8 1.7E-20 3.6E-25 139.6 10.8 141 5-148 188-340 (351)
143 PRK05291 trmE tRNA modificatio 99.8 2.1E-20 4.6E-25 143.2 11.6 134 5-147 214-357 (449)
144 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 2.8E-20 6.1E-25 124.0 10.2 141 6-147 10-156 (216)
145 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.7E-20 1E-24 140.7 12.9 133 5-144 202-345 (442)
146 TIGR02528 EutP ethanolamine ut 99.8 3.9E-21 8.4E-26 126.1 5.3 120 8-148 2-133 (142)
147 PRK15494 era GTPase Era; Provi 99.8 5.2E-20 1.1E-24 136.6 11.7 141 2-148 48-204 (339)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 7.9E-20 1.7E-24 122.7 11.5 133 8-147 2-153 (168)
149 KOG0070 GTP-binding ADP-ribosy 99.8 4.9E-20 1.1E-24 122.6 8.7 120 3-126 14-134 (181)
150 PRK03003 GTP-binding protein D 99.8 1.1E-19 2.4E-24 140.2 10.8 137 6-148 38-187 (472)
151 PRK03003 GTP-binding protein D 99.8 2.1E-19 4.5E-24 138.7 11.9 138 5-148 210-370 (472)
152 cd01881 Obg_like The Obg-like 99.8 2.3E-19 5E-24 121.2 10.7 135 11-147 1-164 (176)
153 KOG0075 GTP-binding ADP-ribosy 99.8 9.8E-21 2.1E-25 121.5 3.6 141 5-148 19-170 (186)
154 PRK12299 obgE GTPase CgtA; Rev 99.8 1.4E-19 3E-24 133.8 10.3 139 7-147 159-315 (335)
155 cd01879 FeoB Ferrous iron tran 99.8 2.9E-19 6.2E-24 118.8 10.7 129 11-147 1-144 (158)
156 TIGR03598 GTPase_YsxC ribosome 99.8 2.7E-19 5.9E-24 121.8 10.7 140 2-148 14-178 (179)
157 cd01894 EngA1 EngA1 subfamily. 99.8 1.7E-19 3.8E-24 119.5 8.2 132 10-147 1-145 (157)
158 KOG1707 Predicted Ras related/ 99.8 7.8E-20 1.7E-24 139.4 6.9 124 4-128 7-133 (625)
159 TIGR00436 era GTP-binding prot 99.8 3.4E-19 7.4E-24 128.7 9.7 134 8-148 2-152 (270)
160 cd01895 EngA2 EngA2 subfamily. 99.8 1.5E-18 3.4E-23 116.5 11.9 137 6-148 2-163 (174)
161 TIGR03594 GTPase_EngA ribosome 99.8 2.3E-18 4.9E-23 131.7 13.9 138 5-148 171-332 (429)
162 PRK04213 GTP-binding protein; 99.8 6E-20 1.3E-24 127.1 4.7 136 5-148 8-180 (201)
163 PRK00093 GTP-binding protein D 99.8 4.5E-19 9.8E-24 135.7 9.5 135 7-147 2-149 (435)
164 TIGR02729 Obg_CgtA Obg family 99.8 7.9E-19 1.7E-23 129.6 10.0 139 7-147 158-316 (329)
165 KOG1673 Ras GTPases [General f 99.8 6.6E-19 1.4E-23 114.2 8.2 117 5-122 19-136 (205)
166 TIGR01393 lepA GTP-binding pro 99.8 7.3E-19 1.6E-23 138.4 10.1 139 6-148 3-168 (595)
167 cd04163 Era Era subfamily. Er 99.8 2.6E-18 5.5E-23 114.5 10.7 139 5-147 2-156 (168)
168 TIGR03594 GTPase_EngA ribosome 99.8 1.4E-18 3E-23 132.8 9.7 134 8-147 1-147 (429)
169 KOG0071 GTP-binding ADP-ribosy 99.8 5E-18 1.1E-22 108.3 9.6 121 4-128 15-136 (180)
170 TIGR00487 IF-2 translation ini 99.8 7.7E-18 1.7E-22 132.3 12.4 139 5-148 86-238 (587)
171 cd01889 SelB_euk SelB subfamil 99.8 2.3E-18 5.1E-23 118.5 8.3 138 7-148 1-174 (192)
172 COG2229 Predicted GTPase [Gene 99.8 1.5E-17 3.3E-22 110.7 10.9 139 2-145 6-163 (187)
173 CHL00189 infB translation init 99.8 6.7E-18 1.5E-22 134.7 10.6 140 5-148 243-398 (742)
174 cd04167 Snu114p Snu114p subfam 99.8 4.2E-18 9.2E-23 119.0 8.3 112 8-123 2-136 (213)
175 PRK11058 GTPase HflX; Provisio 99.8 9.7E-18 2.1E-22 127.5 10.7 139 7-147 198-349 (426)
176 cd00881 GTP_translation_factor 99.7 1.2E-17 2.6E-22 113.9 9.6 113 8-124 1-128 (189)
177 PRK12297 obgE GTPase CgtA; Rev 99.7 1.4E-17 3E-22 126.3 10.4 138 8-147 160-314 (424)
178 PF02421 FeoB_N: Ferrous iron 99.7 7.2E-18 1.6E-22 111.7 7.8 133 7-147 1-148 (156)
179 PRK00089 era GTPase Era; Revie 99.7 1.6E-17 3.4E-22 121.3 9.9 139 3-147 2-158 (292)
180 cd04168 TetM_like Tet(M)-like 99.7 1.1E-17 2.4E-22 118.6 8.7 113 8-124 1-130 (237)
181 PRK05306 infB translation init 99.7 3.5E-17 7.7E-22 131.6 12.6 140 4-149 288-441 (787)
182 PRK00454 engB GTP-binding prot 99.7 2.5E-17 5.5E-22 113.3 9.9 139 3-147 21-181 (196)
183 PRK09518 bifunctional cytidyla 99.7 2.8E-17 6E-22 132.3 11.4 114 5-124 449-575 (712)
184 PRK05433 GTP-binding protein L 99.7 1.7E-17 3.7E-22 130.9 9.9 142 3-148 4-172 (600)
185 cd01896 DRG The developmentall 99.7 5.5E-17 1.2E-21 114.8 11.4 82 8-91 2-91 (233)
186 PRK09518 bifunctional cytidyla 99.7 2.5E-17 5.5E-22 132.5 10.6 138 5-148 274-424 (712)
187 PRK12317 elongation factor 1-a 99.7 4.9E-17 1.1E-21 124.2 11.6 148 1-149 1-194 (425)
188 PRK12296 obgE GTPase CgtA; Rev 99.7 2.7E-17 5.9E-22 126.3 10.0 138 7-147 160-327 (500)
189 cd04169 RF3 RF3 subfamily. Pe 99.7 3.5E-17 7.6E-22 117.9 9.6 115 7-125 3-138 (267)
190 TIGR00475 selB selenocysteine- 99.7 6.8E-17 1.5E-21 127.2 12.0 133 7-148 1-154 (581)
191 PRK15467 ethanolamine utilizat 99.7 2.8E-17 6E-22 109.9 7.9 122 8-147 3-134 (158)
192 cd01885 EF2 EF2 (for archaea a 99.7 8.5E-17 1.8E-21 112.9 10.6 112 8-123 2-138 (222)
193 KOG4423 GTP-binding protein-li 99.7 3.7E-20 8.1E-25 123.2 -6.0 143 5-148 24-182 (229)
194 PRK00093 GTP-binding protein D 99.7 1.2E-16 2.6E-21 122.4 11.9 137 5-147 172-331 (435)
195 TIGR00491 aIF-2 translation in 99.7 5.8E-17 1.3E-21 127.3 9.4 129 5-143 3-151 (590)
196 KOG0074 GTP-binding ADP-ribosy 99.7 1.6E-16 3.4E-21 101.7 9.6 117 4-123 15-132 (185)
197 COG1160 Predicted GTPases [Gen 99.7 6.8E-17 1.5E-21 121.0 9.0 134 7-146 4-153 (444)
198 PRK10218 GTP-binding protein; 99.7 2.4E-16 5.3E-21 124.1 12.4 118 4-125 3-135 (607)
199 TIGR00483 EF-1_alpha translati 99.7 1.6E-16 3.4E-21 121.5 10.8 146 3-148 4-195 (426)
200 cd00880 Era_like Era (E. coli 99.7 2.2E-16 4.8E-21 104.1 10.2 132 11-147 1-151 (163)
201 COG1159 Era GTPase [General fu 99.7 2.1E-16 4.6E-21 112.8 10.1 142 1-148 1-160 (298)
202 PRK09554 feoB ferrous iron tra 99.7 4.3E-16 9.3E-21 125.7 12.8 135 5-147 2-155 (772)
203 COG0486 ThdF Predicted GTPase 99.7 2.9E-16 6.4E-21 117.9 11.0 135 5-146 216-362 (454)
204 cd01850 CDC_Septin CDC/Septin. 99.7 6.7E-16 1.4E-20 111.7 12.3 116 5-124 3-157 (276)
205 TIGR00437 feoB ferrous iron tr 99.7 2.8E-16 6.1E-21 123.9 10.2 128 13-148 1-143 (591)
206 cd04166 CysN_ATPS CysN_ATPS su 99.7 5.5E-16 1.2E-20 108.0 10.4 136 8-148 1-182 (208)
207 KOG0076 GTP-binding ADP-ribosy 99.7 4.3E-17 9.4E-22 107.5 4.1 123 1-125 12-141 (197)
208 PF09439 SRPRB: Signal recogni 99.7 7.4E-17 1.6E-21 109.1 4.9 116 6-124 3-126 (181)
209 PRK12298 obgE GTPase CgtA; Rev 99.7 6.7E-16 1.4E-20 116.4 10.3 138 8-147 161-320 (390)
210 cd04104 p47_IIGP_like p47 (47- 99.7 5.6E-16 1.2E-20 107.1 9.0 112 6-123 1-120 (197)
211 TIGR01394 TypA_BipA GTP-bindin 99.7 1E-15 2.2E-20 120.6 10.7 135 8-146 3-167 (594)
212 PF00009 GTP_EFTU: Elongation 99.6 6.6E-16 1.4E-20 106.0 8.1 115 5-123 2-135 (188)
213 cd01888 eIF2_gamma eIF2-gamma 99.6 1.4E-15 2.9E-20 105.7 9.7 89 54-148 83-187 (203)
214 PF01926 MMR_HSR1: 50S ribosom 99.6 3.4E-15 7.4E-20 94.8 10.7 105 8-119 1-116 (116)
215 cd04170 EF-G_bact Elongation f 99.6 1.4E-15 3.1E-20 109.7 9.6 114 8-125 1-131 (268)
216 PRK04004 translation initiatio 99.6 3.1E-15 6.8E-20 117.8 12.1 114 3-123 3-136 (586)
217 PRK13351 elongation factor G; 99.6 6.9E-16 1.5E-20 124.0 8.5 119 3-125 5-140 (687)
218 cd01886 EF-G Elongation factor 99.6 2.1E-15 4.6E-20 108.8 9.9 113 8-124 1-130 (270)
219 cd01884 EF_Tu EF-Tu subfamily. 99.6 4.2E-15 9.1E-20 102.6 10.6 139 6-148 2-171 (195)
220 cd01883 EF1_alpha Eukaryotic e 99.6 3E-15 6.5E-20 105.1 9.3 139 8-148 1-193 (219)
221 PRK00741 prfC peptide chain re 99.6 2.1E-15 4.6E-20 117.4 9.2 117 4-124 8-145 (526)
222 TIGR00503 prfC peptide chain r 99.6 1.1E-14 2.4E-19 113.5 10.7 117 4-124 9-146 (527)
223 cd01876 YihA_EngB The YihA (En 99.6 2.1E-14 4.6E-19 95.8 9.8 107 8-123 1-123 (170)
224 PRK10512 selenocysteinyl-tRNA- 99.6 2.6E-14 5.7E-19 113.2 11.6 132 8-148 2-154 (614)
225 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 1.9E-14 4.1E-19 101.3 9.5 114 8-123 1-124 (232)
226 TIGR00484 EF-G translation elo 99.6 1.8E-14 4E-19 115.8 10.5 117 4-124 8-141 (689)
227 COG1084 Predicted GTPase [Gene 99.6 3.6E-14 7.9E-19 102.5 9.6 119 5-127 167-297 (346)
228 TIGR03680 eif2g_arch translati 99.6 1.8E-14 3.9E-19 109.5 8.3 139 4-148 2-184 (406)
229 smart00010 small_GTPase Small 99.5 1.4E-14 3.1E-19 92.4 6.1 111 7-147 1-113 (124)
230 TIGR00485 EF-Tu translation el 99.5 8E-14 1.7E-18 105.7 10.2 116 3-124 9-142 (394)
231 KOG1423 Ras-like GTPase ERA [C 99.5 3.9E-14 8.5E-19 101.5 7.6 122 3-127 69-202 (379)
232 TIGR00490 aEF-2 translation el 99.5 2.4E-14 5.3E-19 115.5 7.3 115 5-123 18-151 (720)
233 PRK04000 translation initiatio 99.5 8.7E-14 1.9E-18 105.9 9.9 140 3-148 6-189 (411)
234 PRK12736 elongation factor Tu; 99.5 1.1E-13 2.3E-18 105.0 10.3 117 4-124 10-142 (394)
235 PRK12735 elongation factor Tu; 99.5 2.2E-13 4.7E-18 103.3 11.1 117 4-124 10-142 (396)
236 KOG0072 GTP-binding ADP-ribosy 99.5 1.3E-14 2.7E-19 93.2 3.6 143 4-150 16-169 (182)
237 CHL00071 tufA elongation facto 99.5 2E-13 4.4E-18 103.9 10.6 118 3-124 9-142 (409)
238 PLN03126 Elongation factor Tu; 99.5 1.8E-13 3.9E-18 105.6 10.4 117 4-124 79-211 (478)
239 PRK12739 elongation factor G; 99.5 1.8E-13 4E-18 110.1 9.9 117 4-124 6-139 (691)
240 KOG0077 Vesicle coat complex C 99.5 1.1E-13 2.4E-18 90.9 7.1 117 5-125 19-136 (193)
241 cd01853 Toc34_like Toc34-like 99.5 5.7E-13 1.2E-17 95.0 11.0 118 4-124 29-163 (249)
242 KOG1489 Predicted GTP-binding 99.5 4E-13 8.6E-18 96.8 10.1 140 7-148 197-355 (366)
243 TIGR02034 CysN sulfate adenyly 99.5 2.3E-13 4.9E-18 103.5 8.9 139 7-148 1-185 (406)
244 COG1160 Predicted GTPases [Gen 99.5 1.3E-12 2.8E-17 98.3 12.4 115 5-125 177-304 (444)
245 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 9.4E-13 2E-17 90.9 10.9 113 7-124 1-130 (196)
246 TIGR00991 3a0901s02IAP34 GTP-b 99.5 7.4E-13 1.6E-17 96.3 10.6 118 4-124 36-167 (313)
247 cd04165 GTPBP1_like GTPBP1-lik 99.5 7E-13 1.5E-17 93.4 9.7 113 8-124 1-152 (224)
248 cd00066 G-alpha G protein alph 99.5 5.5E-13 1.2E-17 98.4 9.6 72 53-124 160-242 (317)
249 COG0370 FeoB Fe2+ transport sy 99.5 1E-12 2.2E-17 102.9 11.4 135 5-147 2-151 (653)
250 cd01899 Ygr210 Ygr210 subfamil 99.5 9.8E-13 2.1E-17 96.8 10.6 80 9-88 1-110 (318)
251 PRK05124 cysN sulfate adenylyl 99.4 6.9E-13 1.5E-17 102.5 9.9 143 4-149 25-214 (474)
252 KOG0462 Elongation factor-type 99.4 8.1E-13 1.8E-17 101.0 9.9 141 4-148 58-223 (650)
253 PRK00007 elongation factor G; 99.4 9E-13 2E-17 106.2 10.2 115 4-124 8-141 (693)
254 PRK00049 elongation factor Tu; 99.4 1.9E-12 4.1E-17 98.2 11.3 117 4-124 10-142 (396)
255 COG0218 Predicted GTPase [Gene 99.4 1.4E-12 2.9E-17 88.8 9.4 115 4-125 22-150 (200)
256 COG2262 HflX GTPases [General 99.4 2E-12 4.2E-17 96.1 10.8 141 4-147 190-343 (411)
257 PLN03127 Elongation factor Tu; 99.4 2E-12 4.3E-17 99.3 10.9 117 4-124 59-191 (447)
258 COG3596 Predicted GTPase [Gene 99.4 2.6E-13 5.6E-18 96.1 5.4 119 3-125 36-163 (296)
259 PRK05506 bifunctional sulfate 99.4 1.5E-12 3.1E-17 104.1 10.1 143 4-149 22-210 (632)
260 COG1163 DRG Predicted GTPase [ 99.4 4.7E-12 1E-16 91.6 11.1 86 5-92 62-155 (365)
261 PLN00116 translation elongatio 99.4 1.3E-12 2.8E-17 107.1 8.7 117 3-123 16-163 (843)
262 PLN00043 elongation factor 1-a 99.4 2.3E-12 5.1E-17 98.9 9.5 141 4-148 5-201 (447)
263 PF10662 PduV-EutP: Ethanolami 99.4 4.8E-13 1E-17 87.1 4.9 120 7-146 2-132 (143)
264 PTZ00416 elongation factor 2; 99.4 2.3E-12 4.9E-17 105.6 8.7 116 4-123 17-157 (836)
265 KOG0090 Signal recognition par 99.4 1.5E-12 3.2E-17 89.0 6.4 113 7-123 39-158 (238)
266 smart00275 G_alpha G protein a 99.4 3.4E-12 7.4E-17 95.0 8.6 72 53-124 183-265 (342)
267 PRK12740 elongation factor G; 99.4 1.9E-12 4.1E-17 104.1 7.5 109 12-124 1-126 (668)
268 PTZ00141 elongation factor 1- 99.4 7.3E-12 1.6E-16 96.2 10.4 117 3-122 4-157 (446)
269 KOG1191 Mitochondrial GTPase [ 99.3 6.8E-12 1.5E-16 95.0 9.1 118 5-125 267-404 (531)
270 COG0481 LepA Membrane GTPase L 99.3 1.2E-11 2.7E-16 93.4 9.5 141 4-148 7-174 (603)
271 PF00735 Septin: Septin; Inte 99.3 7.2E-11 1.6E-15 85.7 11.7 116 5-124 3-156 (281)
272 PRK07560 elongation factor EF- 99.3 1.5E-11 3.3E-16 99.7 8.8 115 5-123 19-152 (731)
273 PF04548 AIG1: AIG1 family; I 99.3 2.8E-11 6.2E-16 84.6 8.4 114 7-125 1-131 (212)
274 COG0536 Obg Predicted GTPase [ 99.3 6.7E-11 1.5E-15 86.2 9.8 116 8-125 161-290 (369)
275 PF05049 IIGP: Interferon-indu 99.2 2.8E-11 6.1E-16 90.2 7.6 112 5-122 34-153 (376)
276 COG5256 TEF1 Translation elong 99.2 1.2E-10 2.6E-15 86.8 9.5 148 2-149 3-200 (428)
277 KOG1145 Mitochondrial translat 99.2 1.3E-10 2.9E-15 89.1 9.4 137 5-148 152-304 (683)
278 KOG1707 Predicted Ras related/ 99.2 5.2E-10 1.1E-14 86.3 12.3 122 4-129 423-545 (625)
279 PF00350 Dynamin_N: Dynamin fa 99.2 1.6E-10 3.4E-15 77.7 8.4 62 56-120 103-168 (168)
280 COG0532 InfB Translation initi 99.2 2.9E-10 6.2E-15 87.1 10.5 138 5-147 4-157 (509)
281 COG0480 FusA Translation elong 99.2 8.1E-11 1.8E-15 94.1 7.6 117 3-123 7-141 (697)
282 KOG0468 U5 snRNP-specific prot 99.1 1.6E-10 3.6E-15 90.4 7.6 116 3-122 125-261 (971)
283 PRK09602 translation-associate 99.1 5.2E-10 1.1E-14 84.8 9.8 82 7-88 2-113 (396)
284 TIGR00993 3a0901s04IAP86 chlor 99.1 8.2E-10 1.8E-14 87.2 10.4 117 5-124 117-250 (763)
285 PRK09866 hypothetical protein; 99.1 4.2E-10 9E-15 88.6 8.6 93 54-148 230-341 (741)
286 cd01882 BMS1 Bms1. Bms1 is an 99.1 8.8E-10 1.9E-14 77.8 9.4 108 5-123 38-146 (225)
287 KOG1490 GTP-binding protein CR 99.1 8.3E-11 1.8E-15 89.4 4.3 139 5-146 167-327 (620)
288 PTZ00327 eukaryotic translatio 99.1 6.7E-10 1.5E-14 85.5 8.4 142 3-147 31-220 (460)
289 KOG0082 G-protein alpha subuni 99.1 4.4E-10 9.5E-15 83.0 6.9 71 54-125 195-277 (354)
290 COG1217 TypA Predicted membran 99.1 8.3E-10 1.8E-14 83.5 8.3 119 5-127 4-137 (603)
291 KOG1532 GTPase XAB1, interacts 99.1 3.9E-10 8.4E-15 80.3 5.8 25 4-28 17-41 (366)
292 TIGR02836 spore_IV_A stage IV 99.0 3.7E-09 8.1E-14 79.6 10.4 115 5-121 16-191 (492)
293 PRK14845 translation initiatio 99.0 3.6E-09 7.8E-14 87.9 9.3 100 18-124 473-592 (1049)
294 KOG0705 GTPase-activating prot 99.0 2.7E-10 5.8E-15 87.5 2.1 137 5-148 29-177 (749)
295 KOG1954 Endocytosis/signaling 99.0 2.2E-09 4.9E-14 79.3 6.7 118 8-128 60-229 (532)
296 KOG3886 GTP-binding protein [S 99.0 1.4E-09 3E-14 75.6 5.3 117 6-124 4-130 (295)
297 smart00053 DYNc Dynamin, GTPas 98.9 9.8E-09 2.1E-13 72.9 9.4 68 54-124 125-206 (240)
298 KOG3905 Dynein light intermedi 98.9 8.2E-09 1.8E-13 75.2 8.9 98 6-104 52-154 (473)
299 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.5E-09 7.6E-14 69.4 6.4 54 8-64 85-138 (141)
300 PTZ00258 GTP-binding protein; 98.9 1.1E-08 2.4E-13 77.1 9.5 84 5-88 20-126 (390)
301 KOG2655 Septin family protein 98.9 1.7E-08 3.7E-13 74.8 10.1 115 5-123 20-171 (366)
302 PF03029 ATP_bind_1: Conserved 98.9 1.6E-09 3.6E-14 76.9 4.6 68 55-124 92-170 (238)
303 TIGR00157 ribosome small subun 98.9 1.8E-09 3.9E-14 77.1 4.8 80 65-147 24-110 (245)
304 COG5019 CDC3 Septin family pro 98.9 3.9E-08 8.4E-13 72.6 11.4 116 4-123 21-175 (373)
305 PRK09601 GTP-binding protein Y 98.9 1.2E-08 2.7E-13 76.2 8.5 82 7-88 3-107 (364)
306 PF00503 G-alpha: G-protein al 98.8 2E-08 4.3E-13 76.3 8.4 71 54-124 236-317 (389)
307 PRK13768 GTPase; Provisional 98.8 7.5E-09 1.6E-13 74.3 5.8 71 55-125 98-177 (253)
308 KOG1547 Septin CDC10 and relat 98.8 1.9E-08 4.1E-13 70.5 7.4 117 2-122 42-196 (336)
309 cd01900 YchF YchF subfamily. 98.8 1.3E-08 2.7E-13 73.7 6.4 80 9-88 1-103 (274)
310 PF05783 DLIC: Dynein light in 98.8 7.7E-08 1.7E-12 74.3 10.1 96 6-104 25-127 (472)
311 COG4108 PrfC Peptide chain rel 98.8 3.8E-08 8.2E-13 74.2 8.0 115 5-123 11-146 (528)
312 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.7E-08 7.9E-13 65.7 6.9 55 5-64 101-157 (157)
313 cd01856 YlqF YlqF. Proteins o 98.7 3.7E-08 7.9E-13 66.6 6.7 56 5-64 114-170 (171)
314 cd04178 Nucleostemin_like Nucl 98.7 4.6E-08 1E-12 66.2 6.6 55 6-64 117-172 (172)
315 COG2895 CysN GTPases - Sulfate 98.7 1.7E-07 3.7E-12 69.1 9.8 144 2-148 2-191 (431)
316 cd01859 MJ1464 MJ1464. This f 98.7 6.1E-08 1.3E-12 64.5 6.9 57 5-64 100-156 (156)
317 COG4917 EutP Ethanolamine util 98.7 7.7E-09 1.7E-13 65.3 1.5 118 7-143 2-129 (148)
318 TIGR03596 GTPase_YlqF ribosome 98.7 9.3E-08 2E-12 69.5 7.3 55 5-64 117-173 (276)
319 KOG1486 GTP-binding protein DR 98.6 6.2E-07 1.3E-11 63.5 10.2 91 4-96 60-158 (364)
320 KOG3887 Predicted small GTPase 98.6 8.6E-08 1.9E-12 67.4 5.9 114 7-122 28-147 (347)
321 KOG0458 Elongation factor 1 al 98.6 7.4E-07 1.6E-11 69.3 11.0 144 5-149 176-371 (603)
322 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.3E-07 5E-12 67.8 7.8 57 5-65 120-177 (287)
323 PF03193 DUF258: Protein of un 98.6 5.5E-08 1.2E-12 64.9 4.0 59 7-68 36-101 (161)
324 KOG0467 Translation elongation 98.5 2.9E-07 6.3E-12 73.5 7.3 113 2-121 5-135 (887)
325 KOG1144 Translation initiation 98.5 3.2E-07 6.9E-12 73.2 7.3 109 6-121 475-603 (1064)
326 COG1161 Predicted GTPases [Gen 98.5 2.8E-07 6.1E-12 68.3 6.6 56 5-64 131-187 (322)
327 cd01855 YqeH YqeH. YqeH is an 98.5 1.2E-07 2.6E-12 65.1 4.4 25 6-30 127-151 (190)
328 PRK12288 GTPase RsgA; Reviewed 98.5 1.4E-07 3.1E-12 70.5 4.8 22 9-30 208-229 (347)
329 KOG0099 G protein subunit Galp 98.5 1.3E-07 2.9E-12 67.2 4.2 71 53-124 201-283 (379)
330 TIGR00101 ureG urease accessor 98.5 5.4E-07 1.2E-11 62.4 7.3 81 55-148 93-184 (199)
331 cd01849 YlqF_related_GTPase Yl 98.5 5.8E-07 1.3E-11 59.8 6.9 55 5-64 99-155 (155)
332 KOG0461 Selenocysteine-specifi 98.5 9E-07 1.9E-11 65.3 7.4 117 3-123 4-135 (522)
333 KOG0410 Predicted GTP binding 98.5 6E-07 1.3E-11 65.6 6.5 115 6-124 178-308 (410)
334 TIGR00092 GTP-binding protein 98.4 2.3E-06 4.9E-11 64.2 8.7 82 7-88 3-108 (368)
335 TIGR03348 VI_IcmF type VI secr 98.4 1.9E-06 4.1E-11 73.6 8.6 110 9-123 114-256 (1169)
336 PRK09435 membrane ATPase/prote 98.4 2.3E-06 5E-11 63.6 7.7 61 53-124 148-208 (332)
337 cd01854 YjeQ_engC YjeQ/EngC. 98.3 7.3E-07 1.6E-11 65.2 4.7 24 7-30 162-185 (287)
338 COG0012 Predicted GTPase, prob 98.3 5.2E-06 1.1E-10 61.9 8.6 83 6-88 2-108 (372)
339 TIGR00157 ribosome small subun 98.3 8.1E-07 1.8E-11 63.5 4.3 22 8-29 122-143 (245)
340 PRK12289 GTPase RsgA; Reviewed 98.3 8.4E-07 1.8E-11 66.5 4.5 23 8-30 174-196 (352)
341 KOG0464 Elongation factor G [T 98.3 7.6E-08 1.7E-12 72.4 -1.0 115 5-123 36-167 (753)
342 cd01851 GBP Guanylate-binding 98.3 8.6E-06 1.9E-10 57.5 9.0 86 4-89 5-103 (224)
343 COG1162 Predicted GTPases [Gen 98.3 8.2E-07 1.8E-11 64.5 3.7 57 8-68 166-230 (301)
344 COG0050 TufB GTPases - transla 98.2 2.2E-06 4.8E-11 62.0 5.1 120 5-128 11-146 (394)
345 TIGR03597 GTPase_YqeH ribosome 98.2 2.4E-06 5.3E-11 64.3 5.6 23 7-29 155-177 (360)
346 TIGR00750 lao LAO/AO transport 98.2 8.3E-06 1.8E-10 60.0 8.3 62 53-125 126-187 (300)
347 KOG1491 Predicted GTP-binding 98.2 8.3E-06 1.8E-10 60.1 7.5 84 5-88 19-125 (391)
348 KOG2486 Predicted GTPase [Gene 98.2 5.8E-06 1.3E-10 59.3 6.5 113 4-124 134-262 (320)
349 KOG3859 Septins (P-loop GTPase 98.2 1.2E-05 2.6E-10 57.9 8.0 114 5-122 41-188 (406)
350 PRK00098 GTPase RsgA; Reviewed 98.2 2.7E-06 5.8E-11 62.5 4.9 23 8-30 166-188 (298)
351 KOG4273 Uncharacterized conser 98.2 7.7E-06 1.7E-10 58.1 6.9 114 6-122 4-121 (418)
352 KOG1487 GTP-binding protein DR 98.2 2.2E-05 4.8E-10 56.0 8.8 89 6-96 59-155 (358)
353 COG5192 BMS1 GTP-binding prote 98.1 9.1E-06 2E-10 63.7 7.1 109 4-124 67-177 (1077)
354 PRK13796 GTPase YqeH; Provisio 98.1 5.4E-06 1.2E-10 62.6 5.2 23 7-29 161-183 (365)
355 cd03112 CobW_like The function 98.1 1.9E-05 4.1E-10 52.7 7.1 21 9-29 3-23 (158)
356 COG1618 Predicted nucleotide k 98.1 9E-05 2E-09 49.3 9.4 56 5-62 4-59 (179)
357 KOG0085 G protein subunit Galp 98.0 1.8E-06 3.9E-11 60.5 1.3 74 52-126 197-282 (359)
358 COG5257 GCD11 Translation init 98.0 1.2E-05 2.5E-10 59.0 5.1 139 5-149 9-191 (415)
359 cd01854 YjeQ_engC YjeQ/EngC. 98.0 5.8E-06 1.2E-10 60.5 3.6 73 72-147 73-151 (287)
360 PRK00098 GTPase RsgA; Reviewed 98.0 7.3E-06 1.6E-10 60.3 3.5 72 74-147 77-154 (298)
361 KOG0465 Mitochondrial elongati 98.0 7.8E-06 1.7E-10 64.2 3.6 114 5-122 38-168 (721)
362 KOG0448 Mitofusin 1 GTPase, in 97.9 0.0001 2.2E-09 58.8 9.3 117 5-125 108-276 (749)
363 KOG0469 Elongation factor 2 [T 97.9 2.3E-05 5.1E-10 60.6 5.4 113 5-121 18-161 (842)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1E-05 2.2E-10 52.9 2.9 71 73-145 7-82 (141)
365 PRK12289 GTPase RsgA; Reviewed 97.9 1.6E-05 3.6E-10 59.6 4.3 74 71-147 83-162 (352)
366 PF09547 Spore_IV_A: Stage IV 97.9 0.00037 8.1E-09 53.2 11.0 114 6-121 17-191 (492)
367 PF06858 NOG1: Nucleolar GTP-b 97.8 8.6E-05 1.9E-09 40.7 5.5 45 76-121 12-58 (58)
368 PF13207 AAA_17: AAA domain; P 97.8 1.5E-05 3.2E-10 50.5 2.9 22 8-29 1-22 (121)
369 COG0563 Adk Adenylate kinase a 97.8 1.4E-05 3E-10 54.4 2.8 23 7-29 1-23 (178)
370 PRK08118 topology modulation p 97.8 1.7E-05 3.7E-10 53.5 3.1 23 7-29 2-24 (167)
371 COG3640 CooC CO dehydrogenase 97.8 0.00026 5.6E-09 49.9 8.9 62 56-123 136-198 (255)
372 PRK05480 uridine/cytidine kina 97.8 2.7E-05 5.9E-10 54.2 3.8 28 1-28 1-28 (209)
373 cd01855 YqeH YqeH. YqeH is an 97.8 2.2E-05 4.8E-10 53.8 3.1 52 67-124 24-75 (190)
374 KOG0447 Dynamin-like GTP bindi 97.8 0.0002 4.4E-09 56.2 8.4 68 55-125 413-494 (980)
375 COG3276 SelB Selenocysteine-sp 97.8 0.00013 2.8E-09 55.5 7.1 115 8-125 2-118 (447)
376 PRK07261 topology modulation p 97.8 2.7E-05 5.9E-10 52.7 3.2 23 7-29 1-23 (171)
377 KOG1424 Predicted GTP-binding 97.7 4.2E-05 9.2E-10 59.1 4.5 55 6-64 314-369 (562)
378 TIGR00235 udk uridine kinase. 97.7 4.3E-05 9.2E-10 53.2 4.0 28 1-28 1-28 (207)
379 cd01859 MJ1464 MJ1464. This f 97.7 1.5E-05 3.3E-10 52.9 1.5 74 70-147 5-83 (156)
380 PRK10751 molybdopterin-guanine 97.7 5E-05 1.1E-09 51.4 3.7 29 1-29 1-29 (173)
381 PF13671 AAA_33: AAA domain; P 97.7 3.4E-05 7.3E-10 50.2 2.8 20 9-28 2-21 (143)
382 TIGR01425 SRP54_euk signal rec 97.7 0.00026 5.6E-09 54.5 7.6 22 6-27 100-121 (429)
383 cd00009 AAA The AAA+ (ATPases 97.7 0.00032 6.9E-09 45.1 7.2 25 6-30 19-43 (151)
384 PRK12288 GTPase RsgA; Reviewed 97.7 6.2E-05 1.3E-09 56.5 4.2 70 75-147 118-195 (347)
385 PRK14738 gmk guanylate kinase; 97.6 8.2E-05 1.8E-09 51.8 4.1 25 5-29 12-36 (206)
386 PRK14530 adenylate kinase; Pro 97.6 6.8E-05 1.5E-09 52.5 3.7 21 8-28 5-25 (215)
387 PRK14737 gmk guanylate kinase; 97.6 7.4E-05 1.6E-09 51.3 3.7 24 6-29 4-27 (186)
388 COG1703 ArgK Putative periplas 97.6 0.00015 3.2E-09 52.8 5.3 61 53-124 143-203 (323)
389 PRK06217 hypothetical protein; 97.6 6.4E-05 1.4E-09 51.3 3.3 23 7-29 2-24 (183)
390 cd02038 FleN-like FleN is a me 97.6 0.00095 2.1E-08 43.5 8.6 107 10-123 4-110 (139)
391 COG3523 IcmF Type VI protein s 97.6 0.00016 3.5E-09 61.4 5.9 113 9-124 128-270 (1188)
392 KOG1143 Predicted translation 97.6 0.00019 4.1E-09 53.9 5.6 117 5-125 166-318 (591)
393 cd01858 NGP_1 NGP-1. Autoanti 97.6 8.1E-05 1.7E-09 49.5 3.2 51 74-126 5-55 (157)
394 PTZ00088 adenylate kinase 1; P 97.6 8.5E-05 1.8E-09 52.6 3.5 29 1-29 1-29 (229)
395 PF13555 AAA_29: P-loop contai 97.5 0.0001 2.2E-09 41.3 3.0 21 8-28 25-45 (62)
396 cd02019 NK Nucleoside/nucleoti 97.5 9.2E-05 2E-09 42.4 2.9 21 9-29 2-22 (69)
397 PF13521 AAA_28: AAA domain; P 97.5 6.1E-05 1.3E-09 50.4 2.4 22 8-29 1-22 (163)
398 PRK00300 gmk guanylate kinase; 97.5 0.0001 2.3E-09 51.0 3.6 28 1-29 1-28 (205)
399 PF00004 AAA: ATPase family as 97.5 9.8E-05 2.1E-09 47.1 3.0 21 9-29 1-21 (132)
400 PRK12727 flagellar biosynthesi 97.5 0.00032 7E-09 55.2 6.2 22 7-28 351-372 (559)
401 PRK03839 putative kinase; Prov 97.5 9E-05 1.9E-09 50.4 2.8 22 8-29 2-23 (180)
402 COG0194 Gmk Guanylate kinase [ 97.5 9.4E-05 2E-09 50.3 2.7 25 6-30 4-28 (191)
403 PRK08233 hypothetical protein; 97.5 0.00014 3E-09 49.3 3.5 23 6-28 3-25 (182)
404 COG1116 TauB ABC-type nitrate/ 97.5 0.00011 2.5E-09 52.1 3.0 22 9-30 32-53 (248)
405 PF03266 NTPase_1: NTPase; In 97.4 0.00014 3.1E-09 49.1 3.2 21 8-28 1-21 (168)
406 PRK14527 adenylate kinase; Pro 97.4 0.00017 3.6E-09 49.6 3.6 28 1-28 1-28 (191)
407 COG1126 GlnQ ABC-type polar am 97.4 0.00021 4.5E-09 49.9 3.9 24 8-31 30-53 (240)
408 PRK14532 adenylate kinase; Pro 97.4 0.00012 2.7E-09 50.0 2.9 21 8-28 2-22 (188)
409 smart00382 AAA ATPases associa 97.4 0.00017 3.7E-09 45.9 3.3 25 7-31 3-27 (148)
410 PF13238 AAA_18: AAA domain; P 97.4 0.00014 3E-09 46.2 2.8 21 9-29 1-21 (129)
411 KOG2485 Conserved ATP/GTP bind 97.4 0.00021 4.4E-09 52.3 3.8 60 4-64 141-206 (335)
412 TIGR02322 phosphon_PhnN phosph 97.4 0.00015 3.2E-09 49.2 3.0 22 8-29 3-24 (179)
413 KOG2484 GTPase [General functi 97.4 0.00021 4.4E-09 53.9 3.8 56 5-64 251-307 (435)
414 PRK10078 ribose 1,5-bisphospho 97.4 0.00017 3.8E-09 49.3 3.3 22 8-29 4-25 (186)
415 cd00071 GMPK Guanosine monopho 97.4 0.00017 3.6E-09 47.0 3.0 21 9-29 2-22 (137)
416 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00065 1.4E-08 44.0 5.7 22 8-29 24-45 (133)
417 COG5258 GTPBP1 GTPase [General 97.4 0.00013 2.8E-09 54.9 2.7 120 3-126 114-271 (527)
418 PRK01889 GTPase RsgA; Reviewed 97.4 0.00022 4.8E-09 53.8 4.0 61 8-68 197-261 (356)
419 PF07728 AAA_5: AAA domain (dy 97.4 0.00016 3.4E-09 47.0 2.8 22 8-29 1-22 (139)
420 PF00005 ABC_tran: ABC transpo 97.4 0.00017 3.6E-09 46.6 2.9 23 8-30 13-35 (137)
421 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0019 4.2E-08 38.6 7.4 74 9-96 2-76 (99)
422 PRK13949 shikimate kinase; Pro 97.4 0.0002 4.3E-09 48.4 3.1 21 8-28 3-23 (169)
423 PRK06547 hypothetical protein; 97.3 0.00023 4.9E-09 48.3 3.4 27 3-29 12-38 (172)
424 COG1419 FlhF Flagellar GTP-bin 97.3 0.00038 8.2E-09 52.8 4.7 23 6-28 203-225 (407)
425 PRK00625 shikimate kinase; Pro 97.3 0.0002 4.2E-09 48.6 2.8 21 8-28 2-22 (173)
426 COG1136 SalX ABC-type antimicr 97.3 0.0002 4.3E-09 50.4 2.9 22 8-29 33-54 (226)
427 PHA00729 NTP-binding motif con 97.3 0.00026 5.7E-09 49.8 3.5 27 3-29 14-40 (226)
428 PRK14531 adenylate kinase; Pro 97.3 0.00022 4.8E-09 48.7 3.1 23 7-29 3-25 (183)
429 PF04665 Pox_A32: Poxvirus A32 97.3 0.00022 4.9E-09 50.7 3.2 25 5-29 12-36 (241)
430 TIGR03263 guanyl_kin guanylate 97.3 0.00022 4.8E-09 48.3 3.1 22 8-29 3-24 (180)
431 KOG0460 Mitochondrial translat 97.3 0.00072 1.6E-08 50.2 5.7 118 5-125 53-185 (449)
432 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00022 4.8E-09 48.5 3.0 22 7-28 4-25 (188)
433 PRK02496 adk adenylate kinase; 97.3 0.00026 5.6E-09 48.3 3.2 22 7-28 2-23 (184)
434 PF03205 MobB: Molybdopterin g 97.3 0.00024 5.1E-09 46.6 2.9 22 8-29 2-23 (140)
435 TIGR03597 GTPase_YqeH ribosome 97.3 0.00016 3.4E-09 54.6 2.3 55 64-124 50-104 (360)
436 cd02023 UMPK Uridine monophosp 97.3 0.00023 5E-09 49.1 2.9 21 9-29 2-22 (198)
437 cd02042 ParA ParA and ParB of 97.3 0.0019 4.1E-08 39.7 6.8 82 9-102 2-84 (104)
438 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00027 5.8E-09 44.1 2.8 21 7-27 16-36 (107)
439 PRK05057 aroK shikimate kinase 97.3 0.00033 7.2E-09 47.4 3.6 24 6-29 4-27 (172)
440 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00025 5.5E-09 48.2 2.9 20 9-28 2-21 (183)
441 cd01428 ADK Adenylate kinase ( 97.3 0.00022 4.8E-09 48.8 2.6 22 8-29 1-22 (194)
442 PRK05416 glmZ(sRNA)-inactivati 97.2 0.0034 7.4E-08 46.0 8.7 23 6-28 6-28 (288)
443 COG1117 PstB ABC-type phosphat 97.2 0.00033 7.2E-09 48.9 3.1 23 5-27 32-54 (253)
444 PLN02674 adenylate kinase 97.2 0.00035 7.5E-09 49.9 3.2 25 4-28 29-53 (244)
445 TIGR01351 adk adenylate kinase 97.2 0.00029 6.2E-09 49.2 2.7 21 8-28 1-21 (210)
446 PF02367 UPF0079: Uncharacteri 97.2 0.00075 1.6E-08 43.2 4.3 22 7-28 16-37 (123)
447 PF05621 TniB: Bacterial TniB 97.2 0.001 2.2E-08 48.8 5.4 26 5-30 60-85 (302)
448 PLN02200 adenylate kinase fami 97.2 0.00052 1.1E-08 48.8 3.8 24 5-28 42-65 (234)
449 TIGR00073 hypB hydrogenase acc 97.2 0.00045 9.6E-09 48.1 3.4 26 4-29 20-45 (207)
450 KOG3347 Predicted nucleotide k 97.2 0.00027 5.9E-09 46.5 2.1 25 4-28 5-29 (176)
451 PF13401 AAA_22: AAA domain; P 97.2 0.00033 7.1E-09 44.8 2.5 23 7-29 5-27 (131)
452 cd02025 PanK Pantothenate kina 97.2 0.00034 7.4E-09 49.3 2.8 20 9-28 2-21 (220)
453 TIGR01313 therm_gnt_kin carboh 97.2 0.0003 6.5E-09 46.9 2.4 21 9-29 1-21 (163)
454 PRK00279 adk adenylate kinase; 97.2 0.00038 8.2E-09 48.7 3.0 22 7-28 1-22 (215)
455 cd01130 VirB11-like_ATPase Typ 97.1 0.00046 1E-08 47.2 3.2 23 7-29 26-48 (186)
456 COG3839 MalK ABC-type sugar tr 97.1 0.00053 1.1E-08 51.1 3.7 22 9-30 32-53 (338)
457 PF13191 AAA_16: AAA ATPase do 97.1 0.00038 8.2E-09 47.1 2.7 23 6-28 24-46 (185)
458 PRK05541 adenylylsulfate kinas 97.1 0.00054 1.2E-08 46.4 3.4 25 4-28 5-29 (176)
459 cd03238 ABC_UvrA The excision 97.1 0.00053 1.1E-08 46.7 3.3 21 8-28 23-43 (176)
460 cd01131 PilT Pilus retraction 97.1 0.00044 9.6E-09 47.9 3.0 21 9-29 4-24 (198)
461 PTZ00301 uridine kinase; Provi 97.1 0.00058 1.2E-08 47.8 3.5 23 5-27 2-24 (210)
462 cd02021 GntK Gluconate kinase 97.1 0.00049 1.1E-08 45.2 2.9 21 9-29 2-22 (150)
463 KOG0463 GTP-binding protein GP 97.1 0.0019 4E-08 48.8 6.2 23 5-27 132-154 (641)
464 PRK00131 aroK shikimate kinase 97.1 0.00067 1.5E-08 45.5 3.6 24 6-29 4-27 (175)
465 PRK10646 ADP-binding protein; 97.1 0.0034 7.3E-08 41.7 6.8 22 8-29 30-51 (153)
466 PF13173 AAA_14: AAA domain 97.1 0.00053 1.1E-08 44.0 2.9 25 7-31 3-27 (128)
467 PRK06762 hypothetical protein; 97.1 0.00051 1.1E-08 46.0 2.9 23 7-29 3-25 (166)
468 PRK14529 adenylate kinase; Pro 97.1 0.0005 1.1E-08 48.5 2.9 22 7-28 1-22 (223)
469 PRK13851 type IV secretion sys 97.1 0.0033 7.1E-08 47.2 7.4 25 6-30 162-186 (344)
470 PF00485 PRK: Phosphoribulokin 97.1 0.00048 1E-08 47.5 2.8 20 9-28 2-21 (194)
471 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00059 1.3E-08 47.7 3.3 22 8-29 32-53 (218)
472 PRK13947 shikimate kinase; Pro 97.1 0.00057 1.2E-08 45.9 3.1 21 8-28 3-23 (171)
473 PRK13695 putative NTPase; Prov 97.1 0.00053 1.1E-08 46.4 2.9 22 7-28 1-22 (174)
474 COG1120 FepC ABC-type cobalami 97.1 0.00056 1.2E-08 49.2 3.0 21 8-28 30-50 (258)
475 KOG2423 Nucleolar GTPase [Gene 97.0 0.00061 1.3E-08 51.6 3.3 84 3-93 304-390 (572)
476 PF13479 AAA_24: AAA domain 97.0 0.00054 1.2E-08 48.0 2.9 22 5-26 2-23 (213)
477 PRK08356 hypothetical protein; 97.0 0.00079 1.7E-08 46.4 3.7 23 6-28 5-27 (195)
478 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00061 1.3E-08 46.4 3.1 23 8-30 27-49 (177)
479 PRK13900 type IV secretion sys 97.0 0.0028 6E-08 47.5 6.8 25 6-30 160-184 (332)
480 PLN02459 probable adenylate ki 97.0 0.00068 1.5E-08 48.9 3.4 24 5-28 28-51 (261)
481 PRK09270 nucleoside triphospha 97.0 0.00076 1.7E-08 47.7 3.6 25 4-28 31-55 (229)
482 PRK14528 adenylate kinase; Pro 97.0 0.00067 1.5E-08 46.5 3.3 22 7-28 2-23 (186)
483 TIGR00960 3a0501s02 Type II (G 97.0 0.00068 1.5E-08 47.4 3.3 23 8-30 31-53 (216)
484 PRK08099 bifunctional DNA-bind 97.0 0.00061 1.3E-08 52.1 3.2 25 5-29 218-242 (399)
485 COG1936 Predicted nucleotide k 97.0 0.00056 1.2E-08 46.1 2.6 22 7-28 1-22 (180)
486 KOG0066 eIF2-interacting prote 97.0 0.0042 9.2E-08 48.0 7.6 23 7-29 614-636 (807)
487 PRK14526 adenylate kinase; Pro 97.0 0.00062 1.3E-08 47.7 3.0 21 8-28 2-22 (211)
488 PLN03025 replication factor C 97.0 0.003 6.5E-08 46.9 6.8 23 7-29 35-57 (319)
489 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00071 1.5E-08 47.1 3.3 22 8-29 29-50 (211)
490 PRK04040 adenylate kinase; Pro 97.0 0.00069 1.5E-08 46.6 3.1 23 7-29 3-25 (188)
491 PRK07429 phosphoribulokinase; 97.0 0.00088 1.9E-08 50.0 3.9 27 2-28 4-30 (327)
492 cd00227 CPT Chloramphenicol (C 97.0 0.00063 1.4E-08 46.0 2.9 22 8-29 4-25 (175)
493 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00073 1.6E-08 46.9 3.3 23 8-30 28-50 (205)
494 COG3840 ThiQ ABC-type thiamine 97.0 0.00072 1.6E-08 46.2 3.0 22 8-29 27-48 (231)
495 cd03292 ABC_FtsE_transporter F 97.0 0.00074 1.6E-08 47.1 3.3 22 8-29 29-50 (214)
496 PF05729 NACHT: NACHT domain 97.0 0.00066 1.4E-08 44.9 2.9 20 9-28 3-22 (166)
497 cd00464 SK Shikimate kinase (S 97.0 0.00061 1.3E-08 44.8 2.7 21 8-28 1-21 (154)
498 COG3638 ABC-type phosphate/pho 97.0 0.00067 1.4E-08 48.0 3.0 21 8-28 32-52 (258)
499 PRK06696 uridine kinase; Valid 97.0 0.00088 1.9E-08 47.2 3.6 26 3-28 19-44 (223)
500 cd03261 ABC_Org_Solvent_Resist 97.0 0.00075 1.6E-08 47.8 3.3 22 8-29 28-49 (235)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-40 Score=217.92 Aligned_cols=144 Identities=39% Similarity=0.695 Sum_probs=132.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
++.+||+++|++|||||+|+.||..+.|+..+..|.+..+ ...+.++++.++++||||.|+++|+.....+|++||+||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 4789999999999999999999999999999999998777 568889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCC-ceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGAT-PITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~-~~~~s~~~~~~~ 148 (151)
+|||+++.+||..+ ..|+.+++++. .++|.++||||||+.+.+.++. .+.++. ++|+|++...|.
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 99999999999999 99999999998 5789999999999999999875 345566 899999988764
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=201.57 Aligned_cols=146 Identities=36% Similarity=0.632 Sum_probs=132.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
....+|++++|+++||||||+.||..+.|.+...+|++.-+ .+.+.+++..++|+||||.|+++|.++.++++++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45789999999999999999999999999987788886555 67888999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccCC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~~ 149 (151)
|+|||+++.+||..+ +.|+.++++.. +++-+.|||||+||.+.|++.. +.++..++|+|++.+.|.+
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHH
Confidence 999999999999999 99999999987 4566778999999999888864 6788999999999998764
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=196.11 Aligned_cols=147 Identities=32% Similarity=0.561 Sum_probs=135.7
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (151)
|+....+|++++|+.|||||+|+.||+.+.|.+.+..|.+..+ ...++++++.++++||||.|++.|++.+..+|+.+-
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6778899999999999999999999999999999999998888 558889999999999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 80 VFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++|||+++++||..+ ..|+..+++.. ++..++|+|||+||...|.++. ++.+..++++|++.+.+.
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhH
Confidence 99999999999999999 99999999985 8999999999999999999876 356677889999887654
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-35 Score=198.05 Aligned_cols=145 Identities=34% Similarity=0.610 Sum_probs=134.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.++.+||+++|+++||||+|+.+|..+.|...+..|.+..+ .+.+..++..+.+++|||.|+++|+.+...++++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 35789999999999999999999999999999999997776 56888999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++|||+++..||+++ ..|++.+.++.+ ++|++|||||+|+++.|++.. .+.++.++|+|++.+.|.
T Consensus 89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 999999999999999 779999999885 899999999999999999875 467899999999998875
No 5
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.2e-34 Score=195.24 Aligned_cols=145 Identities=39% Similarity=0.700 Sum_probs=128.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+...+||+++|+++||||||+.+|..+.|..++.||....+...+.+++..+.+++|||+|+++|+.++..+++++++++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45689999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCC-CCceeccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPG-ATPITTSQ 142 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~-~~~~~~s~ 142 (151)
+|||++++.||..+...|++.+.+..++.|++|||||+||.+. +.++. ...+ +.++|+|+
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999999767999999988888999999999999642 23432 2345 47999999
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
+++.|
T Consensus 162 k~~~n 166 (182)
T cd04172 162 LQSEN 166 (182)
T ss_pred CCCCC
Confidence 98876
No 6
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.9e-34 Score=193.52 Aligned_cols=142 Identities=82% Similarity=1.273 Sum_probs=125.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|+++||||||+.+|..+.|..++.+|.+..+...+.+++..+++.+|||+|+++|+.++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999999999988887778888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc----------ccC-------CCCCC-CceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ----------FSS-------GHPGA-TPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----------~~~-------~~~~~-~~~~~s~~~~~~~ 148 (151)
++++.||+.+...|+..+.+..++.|++|||||+|+.+.+. ++. ...+. .++|+|++.+.|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999985689999988778899999999999976542 322 12344 4899999988764
No 7
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.5e-34 Score=195.80 Aligned_cols=144 Identities=57% Similarity=0.960 Sum_probs=124.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
..+||+++|+++||||||+.+|..+.|...+.+|.+..+...+.+++..+.+++|||+|+++|+.++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 56999999999999999999999999998999999888877777889899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc------------ccC-------CCCC-CCceecccee
Q 031880 85 FSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ------------FSS-------GHPG-ATPITTSQVW 144 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~~-------~~~~-~~~~~~s~~~ 144 (151)
||++++.||+.+...|...+.+..++.|++|||||+||.+.+. +.. ...+ ..++++|+.+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9999999999994479988887777899999999999976532 111 1223 5789999998
Q ss_pred eccC
Q 031880 145 VTND 148 (151)
Q Consensus 145 ~~~~ 148 (151)
+.|.
T Consensus 162 g~~v 165 (191)
T cd01875 162 QDGV 165 (191)
T ss_pred CCCH
Confidence 7654
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=191.64 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=130.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+.+|++++|+.+|||||||+||+.+.|...|.+|++..+ .+.+.+.+..+++++|||.|+++|+.+.+.+++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3569999999999999999999999999999999998776 668889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
+|||+++..||.+. ..|++.+.+... ++-+++||||.||.+.|+++.+ +-+..++++|++.+.|.
T Consensus 100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999 999999988763 4678899999999999998753 34457899999988764
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.2e-35 Score=186.51 Aligned_cols=144 Identities=33% Similarity=0.584 Sum_probs=132.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.-++.+++|++|+|||+|+.+|..+.|...|..|++..+ -.++.+++..++++||||.|+++|+.+...++++.|++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 346889999999999999999999999999999998777 4588899999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccCC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~~ 149 (151)
|||+++.+||.+. +.|+++++..++.+|-++||||.|.++.|.+.. ...++.+||+|+++..|..
T Consensus 87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVE 158 (198)
T ss_pred EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccch
Confidence 9999999999999 999999999999999999999999988777764 4678899999999988764
No 10
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-33 Score=192.24 Aligned_cols=142 Identities=36% Similarity=0.678 Sum_probs=124.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
++||+++|+++||||||+++|..+.|...+.+|....+...+.+++..+.+++|||+|+++|+.....++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999999999998888778888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCCC-Cceeccceee
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPGA-TPITTSQVWV 145 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~~-~~~~~s~~~~ 145 (151)
|++++.||+.+...|+..+.+..++.|+++||||+||.+. +.++. ...++ .++|+|+.++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 9999999999658999999988889999999999999642 22432 23444 6899999987
Q ss_pred cc
Q 031880 146 TN 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 161 ~~ 162 (178)
T cd04131 161 EK 162 (178)
T ss_pred Cc
Confidence 64
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2e-33 Score=192.89 Aligned_cols=144 Identities=29% Similarity=0.503 Sum_probs=126.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
...+||+++|+.+||||||+.+|..+.+..++.++....+ ...+.+++..+.+++|||+|+++|..++..+++++++++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999988888777776555 456777888999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.||+.+ ..|++.+.+..++.|++|||||+|+.+.+.++. ...++.++++|+.++.+.
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999 899999988778999999999999988776653 235677999999988764
No 12
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-34 Score=182.08 Aligned_cols=143 Identities=31% Similarity=0.590 Sum_probs=130.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+|++++|++.||||||+.+++++.|...+..|.+..+. +++.-..+.+++++|||.|+++++.....++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 5679999999999999999999999999999999877764 455566788999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||+++.+||..+ +.|.-.+..++ .+.|+|+||||||+.++|.++. ++-++.+||+|+++++|.
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 9999999999999 99999999887 7999999999999999998875 456788999999998774
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.3e-34 Score=183.86 Aligned_cols=143 Identities=31% Similarity=0.540 Sum_probs=128.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||++||++|||||||+.+|..+.|.+....|++..+ .+.+.+++..+++.||||.|+++|+.+++.+|+++.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 569999999999999999999999999887777777766 5688899999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
|||++.+++|..+ ..|..++.-++ +++-.++||||+|.+.+|.+..+ ...+.++|+|++...+.
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 9999999999999 99999999987 45667899999999888888753 56688999999887654
No 14
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.9e-33 Score=188.01 Aligned_cols=142 Identities=54% Similarity=0.986 Sum_probs=123.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+++|..+.|...+.||.+..+...+..++..+.+++|||+|++++...+..++++++++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998899999988887777788889999999999999999998889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc------------cccC--------CCCCCCceeccceeec
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK------------QFSS--------GHPGATPITTSQVWVT 146 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------------~~~~--------~~~~~~~~~~s~~~~~ 146 (151)
+++++||+.+...|...+.+..++.|++|||||+|+.+.. .+.. +.....++++|+.++.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 9999999999447999998877789999999999986542 2211 1223578999999887
Q ss_pred cC
Q 031880 147 ND 148 (151)
Q Consensus 147 ~~ 148 (151)
|.
T Consensus 162 ~v 163 (175)
T cd01874 162 GL 163 (175)
T ss_pred CH
Confidence 64
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.1e-33 Score=193.62 Aligned_cols=141 Identities=29% Similarity=0.528 Sum_probs=123.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+.|+++|+.|||||||+++|..+.|...+.+|.+..+ ...+.+++..+.+++|||+|+++|+.++..++++++++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999999888888886555 557788888999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccCC--------CCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSSG--------HPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~~--------~~~~~~~~~s~~~~~~~ 148 (151)
|++++.||+.+ ..|+..+.+.. .+.|+++||||+|+.+.+++..+ ..+..++++|++.+.+.
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 99999999999 88999988765 57999999999999876666531 13567899999988764
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.6e-33 Score=194.91 Aligned_cols=142 Identities=37% Similarity=0.647 Sum_probs=125.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
..+||+++|+++||||||+++|..+.|...+.+|....+...+.+++..+.+++|||+|+++|+.....++++++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 56899999999999999999999999999999999888877888899999999999999999999988999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCCC-Cceecccee
Q 031880 85 FSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPGA-TPITTSQVW 144 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~~-~~~~~s~~~ 144 (151)
||++++.||..+...|+..+.+..++.|++|||||+|+.+. +.++. ...++ .++|+|++.
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999998548999999987788999999999999642 34442 23455 589999998
Q ss_pred ec
Q 031880 145 VT 146 (151)
Q Consensus 145 ~~ 146 (151)
+.
T Consensus 172 g~ 173 (232)
T cd04174 172 SE 173 (232)
T ss_pred CC
Confidence 75
No 17
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-33 Score=187.36 Aligned_cols=144 Identities=38% Similarity=0.590 Sum_probs=132.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
++.+||+++|+++||||-|+.||..+.|..+..+|.+..+ ...+.++++.++.+||||.|+++|+....++++++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 4679999999999999999999999999999899998777 558889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.+|+++ ..|+.+++.+. +++++++||||+||.+.|.+.. +..+..++++|+....|.
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNV 164 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccH
Confidence 99999999999999 99999999988 7899999999999999887764 456688999999887664
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=183.95 Aligned_cols=144 Identities=33% Similarity=0.574 Sum_probs=129.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
...+||+++|++|+|||||.++|.+.+|...+..|++..+ .+.+.+++..+.++||||.|+++|+++...+++++|+.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 4569999999999999999999999999999999997666 778899999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCccccc--ccccC--------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLRED--KQFSS--------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~--~~~~~--------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.||..+ ..|.+++-.+. ...|.||+|||.|+... |+++. ....+.++|+|+++..|
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 99999999999999 99999987665 25799999999999763 67764 46778899999999877
Q ss_pred C
Q 031880 148 D 148 (151)
Q Consensus 148 ~ 148 (151)
.
T Consensus 166 V 166 (210)
T KOG0394|consen 166 V 166 (210)
T ss_pred H
Confidence 4
No 19
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.3e-32 Score=184.25 Aligned_cols=142 Identities=65% Similarity=1.085 Sum_probs=122.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+.+|+.+.|..++.++....+...+.+++..+.+.+|||+|++++...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 69999999999999999999999999999999887777777788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc------------ccC--------CCCCCCceeccceeec
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ------------FSS--------GHPGATPITTSQVWVT 146 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~~--------~~~~~~~~~~s~~~~~ 146 (151)
+++++||..+...|+..+.+..++.|++|||||+|+.+.+. +.. +...+.++++|+.++.
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 161 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK 161 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence 99999999995579998887777899999999999965321 211 1222478999999887
Q ss_pred cC
Q 031880 147 ND 148 (151)
Q Consensus 147 ~~ 148 (151)
+.
T Consensus 162 ~i 163 (174)
T cd01871 162 GL 163 (174)
T ss_pred CH
Confidence 64
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-33 Score=179.66 Aligned_cols=143 Identities=31% Similarity=0.563 Sum_probs=128.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.-+||+++|..|+|||+|+++|..+-|++....|.+..+ -+++.++++.++++||||.|+++|++..+.+++.+|++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 457999999999999999999999999998888887666 5688999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+||++...||+.+ ..|+.+++++.. .+-.++||||.|+.+.|++.. +.+.+.+.|+|+++..|.
T Consensus 86 vydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nv 157 (213)
T KOG0095|consen 86 VYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNV 157 (213)
T ss_pred EEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhH
Confidence 9999999999999 999999999874 455699999999999888864 446677899999887664
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.9e-32 Score=184.71 Aligned_cols=143 Identities=26% Similarity=0.460 Sum_probs=125.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+.+||+++|++|||||||+++|..+.+...+.++.+..+...+.+++..+.+++|||+|+++++.++..++++++++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35899999999999999999999999988888898877777788889899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||++++.||..+ ..|...+.+.. ++.|+++||||+|+.+.++++. ...++.++++|+..+.+.
T Consensus 81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 152 (172)
T cd04141 81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYI 152 (172)
T ss_pred EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCH
Confidence 999999999999 77888887643 5799999999999987666543 234677899999988654
No 22
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6.1e-32 Score=189.36 Aligned_cols=141 Identities=35% Similarity=0.692 Sum_probs=123.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
++||+++|+++||||||+.+|..+.|+..|.||....+...+.+++..+.+.+|||+|++.|...+..+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999999999999998888878888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc------------cccC-------CCCC-CCceeccceee
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK------------QFSS-------GHPG-ATPITTSQVWV 145 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------------~~~~-------~~~~-~~~~~~s~~~~ 145 (151)
|++++++|+.+...|...+.+..++.|++|||||+|+.+.. .++. .+.+ +.++|+|+..+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999999778998888877899999999999996531 1221 1334 47999999876
Q ss_pred c
Q 031880 146 T 146 (151)
Q Consensus 146 ~ 146 (151)
.
T Consensus 161 ~ 161 (222)
T cd04173 161 E 161 (222)
T ss_pred C
Confidence 4
No 23
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.4e-31 Score=183.84 Aligned_cols=142 Identities=44% Similarity=0.684 Sum_probs=122.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
.||+++|++|||||||+++|..+.+...+.++....+...+..++..+.+++|||+|++++...+..++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888899888777777788888999999999999999998889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------------C--------CCCCCCceeccceeec
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------------S--------GHPGATPITTSQVWVT 146 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------------~--------~~~~~~~~~~s~~~~~ 146 (151)
++++.||+.+...|+..+.+..++.|+++||||+|+.+.+... . ....+.++++|+.++.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 9999999998557999998877889999999999997655321 0 1223568999999876
Q ss_pred cC
Q 031880 147 ND 148 (151)
Q Consensus 147 ~~ 148 (151)
+.
T Consensus 161 ~v 162 (189)
T cd04134 161 GV 162 (189)
T ss_pred CH
Confidence 54
No 24
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=2.9e-31 Score=177.68 Aligned_cols=142 Identities=30% Similarity=0.509 Sum_probs=121.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.+||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+++|||+|++++...+..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999998888888887777777888888899999999999999999989999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|+.+ ..|...+.+.. ++.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd04136 81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINV 151 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 99999999999 88988887653 5799999999999976544432 223466899999887653
No 25
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=4.2e-31 Score=181.51 Aligned_cols=144 Identities=33% Similarity=0.526 Sum_probs=125.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+..+||+++|++|||||||+++|..+.+...+.++....+...+.+++..+.+++|||+|++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 67899999999999999999999999998888888888888888889989999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNV 155 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 9999999999999 88998887654 4789999999999976554432 223456799998887654
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=3.5e-31 Score=178.20 Aligned_cols=142 Identities=30% Similarity=0.563 Sum_probs=122.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.+||+++|+++||||||+++|..+.+...+.++....+. ..+.+++..+.+.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999998888878766653 4567788889999999999999999888899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||++++.+|..+ ..|+..+.... ++.|+++||||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999 89999887664 5789999999999987665542 234567899999888764
No 27
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=7.2e-31 Score=177.71 Aligned_cols=140 Identities=62% Similarity=1.056 Sum_probs=120.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 88 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (151)
|+++|++|||||||+++|..+.+...+.++....+...+.+++..+.+.+|||+|++++...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888888888778888888899999999999999999988999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc------------cc-------CCCCC-CCceeccceeeccC
Q 031880 89 SKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ------------FS-------SGHPG-ATPITTSQVWVTND 148 (151)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~-------~~~~~-~~~~~~s~~~~~~~ 148 (151)
++.||+.+...|+..+.+..++.|+++||||+|+...+. +. ....+ ..++++|+.++.+.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 999999985679999988778999999999999975332 11 11233 36889998887654
No 28
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=7.4e-31 Score=184.07 Aligned_cols=144 Identities=27% Similarity=0.407 Sum_probs=122.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|+++|...+..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5689999999999999999999999999888888886554 446667777899999999999999999988999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-----cCCCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-----SSGHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.+|..+ ..|+..+.+..++.|+++||||+|+.+.... .....++.++++|+..+.+.
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999 8999999888888999999999999642211 11234567899999987654
No 29
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=1e-30 Score=175.31 Aligned_cols=141 Identities=33% Similarity=0.598 Sum_probs=121.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|++|||||||+++|..+.+.+.+.++.+..+ ...+..++..+.+++||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999999999888888887655 456778888899999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.||..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|++.+.|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v 150 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNI 150 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999 88999988766 4789999999999987766532 234477899999987654
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=7.2e-31 Score=176.23 Aligned_cols=142 Identities=27% Similarity=0.504 Sum_probs=122.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
++||+++|++|||||||+++++.+.+...+.++....+...+..++..+.+++|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999988888888888777778888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|...+.+.. ++.|+++||||+|+.+++.+.. +..++.++++|+.++.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINV 151 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 99999999999 78888876543 6899999999999976544432 233467899999887654
No 31
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.3e-30 Score=174.79 Aligned_cols=142 Identities=31% Similarity=0.514 Sum_probs=120.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
++||+++|.+|||||||+++++.+.+...+.++....+...+.+++..+.+++|||+|+++|...+..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888877666777888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|.++ ..|...+.+.. .+.|+++||||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 99999999999 88988887754 5799999999999976544332 122456789998877654
No 32
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.6e-30 Score=174.93 Aligned_cols=141 Identities=28% Similarity=0.441 Sum_probs=120.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+++++.+.+...+.++....+...+..+...+.+++|||+|++++...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777667777888999999999999999888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++.+|..+ ..|+..+.+.. ++.|+++||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNV 153 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCH
Confidence 9999999999 88888776643 5789999999999977555532 234567899999888654
No 33
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2e-30 Score=174.74 Aligned_cols=143 Identities=31% Similarity=0.605 Sum_probs=122.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||+++|+++||||||+++|.+..+...+.++....+ ...+..++..+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999999888888887655 3466778888999999999999999888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999 88999998765 5789999999999986554432 234567899999887653
No 34
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-31 Score=169.70 Aligned_cols=144 Identities=32% Similarity=0.550 Sum_probs=129.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+.-+|++++|+.|.|||+|+++|..+.|..+...|.+..+ ...+.+.++.++++||||.|+++|++....+++++-+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 3568999999999999999999999999988888888877 456678899999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||+++++||+.+ ..|+..++-.. +++-++++|||.||.++|+++- .+....+.|+|+..+.|.
T Consensus 87 LVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 87 LVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 159 (214)
T ss_pred EEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccH
Confidence 99999999999999 99999998876 5788899999999999999863 455567789999888764
No 35
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8.1e-31 Score=180.21 Aligned_cols=140 Identities=36% Similarity=0.564 Sum_probs=120.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
||+++|++|||||||+++|..+.+...+.++....+...+.+++..+.+++|||+|++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888777777777888889999999999999999998999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+++.||+.+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v 151 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNV 151 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 999999999 88888886643 4789999999999976555442 223467899999987664
No 36
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.4e-30 Score=174.57 Aligned_cols=142 Identities=53% Similarity=0.932 Sum_probs=121.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|+|||||+.++..+.+..++.+|..+.+...+.+++..+.+++||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999999889998877777788888888999999999999999998889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCC-CCceeccceeec
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPG-ATPITTSQVWVT 146 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~-~~~~~~s~~~~~ 146 (151)
++++.+|+.+...|+..+.+..++.|+++||||+|+... +.+.. ...+ ..++++|+..+.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 999999999856799988876678999999999998642 22221 1123 378999998886
Q ss_pred cC
Q 031880 147 ND 148 (151)
Q Consensus 147 ~~ 148 (151)
|.
T Consensus 161 ~v 162 (173)
T cd04130 161 NL 162 (173)
T ss_pred CH
Confidence 64
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.1e-30 Score=174.86 Aligned_cols=139 Identities=40% Similarity=0.784 Sum_probs=124.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccce-eeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
||+++|+++||||||+++|.++.+...+.++. .+.+...+.+++..+.+++||++|++++......++++++++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998 55567788899999999999999999998888889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 87 LISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++++||..+ ..|+..+....+ +.|++|||||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence 9999999999 899999999887 799999999999998776653 23448899999887654
No 38
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.6e-30 Score=177.00 Aligned_cols=142 Identities=47% Similarity=0.885 Sum_probs=119.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEEC-CeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|++|||||||+++|..+.+...+.++....+...+... +..+.+.+|||+|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877776666665 77889999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc----cccC-------CCCCC-CceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK----QFSS-------GHPGA-TPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~-------~~~~~-~~~~~s~~~~~~~ 148 (151)
|++++.||+.+...|+..+.+..++.|+++||||+|+.+.+ .+.. ...+. .++++|+..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENV 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCH
Confidence 99999999999567998887767789999999999996543 1211 12334 6799998877654
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=3e-30 Score=175.60 Aligned_cols=144 Identities=40% Similarity=0.612 Sum_probs=120.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEEC----------CeEEEEEEEeCCChhccccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRP 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~d~~g~~~~~~~~~ 72 (151)
.+.+||+++|+++||||||+++|..+.+...+.++....+. ..+.+. +..+.+++||++|++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35799999999999999999999999998888888765553 334433 4568999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccce
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQV 143 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~ 143 (151)
.+++++|++++|||+++++||..+ ..|+..+.+.. ++.|+++||||+|+.+.+.+.. ...++.++++|+.
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 999999999999999999999999 89999987653 5789999999999977655542 2345678999998
Q ss_pred eeccC
Q 031880 144 WVTND 148 (151)
Q Consensus 144 ~~~~~ 148 (151)
.+.+.
T Consensus 161 ~~~~v 165 (180)
T cd04127 161 TGTNV 165 (180)
T ss_pred CCCCH
Confidence 88654
No 40
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.2e-30 Score=178.71 Aligned_cols=141 Identities=29% Similarity=0.460 Sum_probs=118.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC-CeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+.+|||+|++++...+..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888888887655 4466676 7789999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccccccccC-------CCCC-CCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLREDKQFSS-------GHPG-ATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~~~~~~-------~~~~-~~~~~~s~~~~~~~ 148 (151)
||++++.+|..+ ..|+..+.+.. .++|++|||||+|+.+.+.+.. ...+ ..++++|+.++.+.
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCH
Confidence 999999999999 89998887542 5789999999999975444332 1223 57899999887653
No 41
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=6.2e-30 Score=172.38 Aligned_cols=141 Identities=29% Similarity=0.481 Sum_probs=119.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++++...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888888888876554 345556778899999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-----CCCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-----SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|+..+.+...+.|+++||||+|+.+..... .....+.++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 99999999999 89999999887789999999999997332111 1345567899999887654
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=6.2e-30 Score=172.00 Aligned_cols=141 Identities=31% Similarity=0.594 Sum_probs=119.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|.++.+...+.++.+..+ ...+..++..+.+++||++|++++...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888876554 345556777899999999999999988889999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 151 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINV 151 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999 88999998765 5789999999999976654432 234456899998877653
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=5.6e-30 Score=172.18 Aligned_cols=142 Identities=35% Similarity=0.666 Sum_probs=121.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..+++.++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988877778776554 45677788889999999999999998888899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||+++++||..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNV 152 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCH
Confidence 999999999999 88999998776 5789999999999976554432 234567899999887654
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=4.6e-30 Score=171.74 Aligned_cols=141 Identities=32% Similarity=0.548 Sum_probs=120.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC--CeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+||+++|++++|||||+++|..+.+...+.++....+ ...+.+. +..+.+++|||||++++...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4899999999999999999999999888888886665 4455565 778899999999999999998899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++++|..+ ..|+..+.+...+.|+++|+||+|+..++.+.. ...++.++++|+.++.+.
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 9999999999999 899999988778999999999999976555432 234567889998876543
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=5.5e-30 Score=173.29 Aligned_cols=140 Identities=32% Similarity=0.542 Sum_probs=117.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
||+++|+++||||||+++|+.+.|...|.++.+..+. ..+.+++..+.+++|||+|+++|...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999999999999876664 567788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc---------CCCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS---------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~---------~~~~~~~~~~~s~~~~~~~ 148 (151)
++++.++..+ ..|+..+.+.. .+.|+++||||+|+.+.+... ..+.++.++++|+..+.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v 153 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENV 153 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 9999999999 88999876543 357899999999996543321 1223466789998877653
No 46
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=6.8e-30 Score=171.15 Aligned_cols=142 Identities=34% Similarity=0.521 Sum_probs=121.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.+||+++|++++|||||+++++.+.+...+.++....+.....+++..+.+++|||||++++...+..++++++++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999988888888887777777778888899999999999999999889999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|...+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 152 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNV 152 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCH
Confidence 99999999999 88888887653 5789999999999976554332 123567899999887654
No 47
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=6.4e-30 Score=176.90 Aligned_cols=123 Identities=25% Similarity=0.401 Sum_probs=106.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEEC-----CeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
+||+++|+++||||||+++|..+.|...+.+|.+..+. +.+.++ +..+.+++|||+|++++..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888888875543 344443 567999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhh--------------------CCCCCEEEEeeCCcccccccccC
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHY--------------------APNVPIVLVGTKLDLREDKQFSS 130 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~~iivv~nK~Dl~~~~~~~~ 130 (151)
+|+|||++++.||+++ ..|+..+.+. ..++|++|||||+|+.++|.+..
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~ 149 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG 149 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch
Confidence 9999999999999999 8999998653 13689999999999987765543
No 48
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=6.1e-30 Score=170.76 Aligned_cols=142 Identities=35% Similarity=0.530 Sum_probs=120.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++|||+|++++..++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999999888888888777777888888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc------CCCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|...+.+.. .+.|+++|+||+|+.+..... ....+..++++|+..+.+.
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGV 150 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCH
Confidence 99999999998 88888887764 478999999999986522111 1234567889999887654
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=4.4e-30 Score=175.49 Aligned_cols=140 Identities=29% Similarity=0.567 Sum_probs=117.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|+.+.|..++.+|.+..+ ...+.+++..+.+++||++|+++|...+..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988999987655 457788888999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccc-----c-cccc------CCCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLRE-----D-KQFS------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~-----~-~~~~------~~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.||..+ ..|+..+.+..+ ..| ++||||+|+.+ . +.+. ....++.++++|+.++.+.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999 899999887654 455 68899999842 1 1111 1233467899999887654
No 50
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.6e-29 Score=171.04 Aligned_cols=142 Identities=52% Similarity=0.960 Sum_probs=121.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++++|||||+++|..+.+...+.++....+...+.+++..+.+.+|||+|++.+...+..++++++++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888887777778888888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc------------cccC--------CCCCCCceeccceeec
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK------------QFSS--------GHPGATPITTSQVWVT 146 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------------~~~~--------~~~~~~~~~~s~~~~~ 146 (151)
++++.+|..+...|...+.+..++.|+++||||+|+.+.. .+.. ......++++|+..+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 9999999999668999888777789999999999986532 1111 1122357899998887
Q ss_pred cC
Q 031880 147 ND 148 (151)
Q Consensus 147 ~~ 148 (151)
+.
T Consensus 161 gi 162 (174)
T cd04135 161 GL 162 (174)
T ss_pred CH
Confidence 64
No 51
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=5.8e-30 Score=171.68 Aligned_cols=141 Identities=34% Similarity=0.567 Sum_probs=120.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+++|.+..+...+.++..+.+...+..++..+.+++|||||++++...+..+++.++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999999888888888877777777788888999999999999999998889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++++|..+ ..|...+.+.. .+.|+++||||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNV 150 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCH
Confidence 9999999999 88888776653 4789999999999976554432 234467899999887654
No 52
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.7e-29 Score=174.89 Aligned_cols=143 Identities=34% Similarity=0.589 Sum_probs=122.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+||+++|++|||||||+++|.+..+...+.+|....+ ...+..++..+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999998888888886554 456667788889999999999999999889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++++|..+ ..|+..+....+..|++|||||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 99999999999999 899999988778899999999999976544431 23356789999887765
No 53
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.1e-29 Score=170.18 Aligned_cols=141 Identities=28% Similarity=0.494 Sum_probs=117.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|++|||||||+++|..+.+.+.+.++..... ......++..+.+++|||+|+++|...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999998877777665433 445667888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc----ccCCCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ----FSSGHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.++..+ ..|+..+.+..++.|+++|+||+|+..... ...+..++.++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 146 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNV 146 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999998 899999988777899999999999853211 011223566789998887654
No 54
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.1e-29 Score=173.80 Aligned_cols=141 Identities=43% Similarity=0.663 Sum_probs=111.1
Q ss_pred eEEEEEECCCCCCHHHHHH-HHhcC-----CCCCCCcccee--eeeeEE--------EEECCeEEEEEEEeCCChhcccc
Q 031880 6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYIPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~-~l~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~d~~g~~~~~~ 69 (151)
.+||+++|+++||||||+. ++.++ .+...+.||.. +.+... +.+++..+.+++|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5899999999999999995 56544 34566777774 334332 256788999999999999752
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc-------------------cccccC
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE-------------------DKQFSS 130 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-------------------~~~~~~ 130 (151)
....++++++++++|||++++.||..+...|+..+.+..++.|+++||||+||.+ .+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4556789999999999999999999994479999988777899999999999974 244442
Q ss_pred -------CCCCCCceeccceeeccC
Q 031880 131 -------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 131 -------~~~~~~~~~~s~~~~~~~ 148 (151)
...++.++|+|++++.|.
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V 184 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGV 184 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCH
Confidence 245678999999988764
No 55
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.2e-29 Score=170.33 Aligned_cols=141 Identities=25% Similarity=0.523 Sum_probs=119.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|+++.+...+.++.+..+ ...+..++..+.+++|||+|++++...+..++++++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888887665 456777888899999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC------CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA------PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999 88999988764 3689999999999974333221 233467899999887653
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.8e-29 Score=168.74 Aligned_cols=143 Identities=31% Similarity=0.552 Sum_probs=119.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+.+||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 578999999999999999999999888777777765444 4566778877899999999999999888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC--------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.... ......++++|+.++.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNV 154 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence 9999999999999 89999997754 5799999999999976554332 222345789999887653
No 57
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.9e-29 Score=169.35 Aligned_cols=143 Identities=38% Similarity=0.604 Sum_probs=121.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||+++|+++||||||+++|.+..+...+.++....+ ...+..++..+.+++||+||++++...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999999988877777776554 5567778888899999999999999888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+... +.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNV 153 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 9999999999999 889999887764 599999999999976554322 234567899999887654
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=6e-29 Score=167.76 Aligned_cols=143 Identities=36% Similarity=0.615 Sum_probs=118.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
++..+||+++|+++||||||+++|..+.+.+.+.++.+..+ ...+..++..+.+++||+||+++++..+..++++++++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 56789999999999999999999999998887777776554 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCccccccccc--------CCCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLREDKQFS--------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~~~~~--------~~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.+|..+ ..|...+.+.. .+.|+++||||+|+.+ +.+. .+.....++++|+.++.+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence 999999999999999 88988776543 3689999999999862 2221 122334688999987754
No 59
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=5.1e-30 Score=176.37 Aligned_cols=143 Identities=36% Similarity=0.578 Sum_probs=130.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
...|++++|.+|||||+|+.+|..+.|...|.||.++.|.+.+.++++.+.+.|+||+|+++|..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
|+++++.||+.+ ..+...+.+.. ..+|+++||||+|+.+.|.+..+ ...+.++|+|++...|.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCH
Confidence 999999999999 77777775433 46899999999999999998865 47788999999987543
No 60
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.3e-29 Score=172.64 Aligned_cols=141 Identities=34% Similarity=0.535 Sum_probs=120.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||++|.+++...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877888886555 456777888899999999999999989999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++++|..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i 150 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV 150 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999 88999998765 4689999999999986654432 233567899999887654
No 61
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=3.6e-29 Score=169.07 Aligned_cols=140 Identities=31% Similarity=0.565 Sum_probs=118.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhccc-ccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i 82 (151)
+.+||+++|++|||||||+++++.+.+...+.++....+ ...+..++..+.+++||++|+++++ ..+..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999988877777776544 4567778888999999999999886 46778889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceee
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWV 145 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~ 145 (151)
+|||++++.+|..+ ..|+..+.+.. .++|+++|+||+|+.+.+++.. ....+.++++|+..+
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 151 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDP 151 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCC
Confidence 99999999999999 89999888764 5799999999999987666542 234577899999873
No 62
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.8e-29 Score=179.74 Aligned_cols=141 Identities=26% Similarity=0.420 Sum_probs=120.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+++|+.+.+...+.+|..+.+.+.+.+++..+.++||||+|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 48999999999999999999999998888888887777778888999999999999999998888778899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCcccccccccC--------CCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHY----------APNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~~~~ 148 (151)
+++++||+.+ ..|...+.+. ..+.|+++|+||+|+.+.+++.. ....+.++++|+..+.+.
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 9999999999 8888887643 24789999999999976554432 123467899999887654
No 63
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.8e-29 Score=176.68 Aligned_cols=141 Identities=28% Similarity=0.445 Sum_probs=118.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECC-eEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+||+++|+++||||||+++|.++.+...+.+|.+..+ ...+.+++ ..+.+++|||+|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888886444 55666654 578999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||+++++||..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999 88999998764 2468999999999986665442 234566889999887653
No 64
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=2.9e-29 Score=175.72 Aligned_cols=143 Identities=34% Similarity=0.573 Sum_probs=123.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+++||++|++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 678999999999999999999999988877778876655 5677888888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999 89999988765 4799999999999976665532 345677899998887654
No 65
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=5e-29 Score=168.81 Aligned_cols=143 Identities=50% Similarity=0.858 Sum_probs=120.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+.||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+|||+|++++...+...++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36899999999999999999999999888888888777777788888899999999999999888888899999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc------------c--------CCCCCCCceeccceee
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF------------S--------SGHPGATPITTSQVWV 145 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~------------~--------~~~~~~~~~~~s~~~~ 145 (151)
|++++.+|..+...|...+.+..++.|+++|+||+|+.+.... . .......++++|+.++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 9999999999866799988877778999999999998643221 0 0112346789998877
Q ss_pred ccC
Q 031880 146 TND 148 (151)
Q Consensus 146 ~~~ 148 (151)
.+.
T Consensus 161 ~~v 163 (175)
T cd01870 161 EGV 163 (175)
T ss_pred cCH
Confidence 653
No 66
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=2.7e-29 Score=168.06 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=111.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+.+|..+.|.+.+.++ ...+...+.+++..+.+.+||++|++.. .+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence 48999999999999999999999887766554 4455677888898899999999999752 45688999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccc--cccccC--------CCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLRE--DKQFSS--------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~--~~~~~~--------~~~~~~~~~~s~~~~~~~ 148 (151)
++++.||+++ ..|+..+.+.. ++.|+++||||+|+.. .+.+.. +...+.++++|+..+.|.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence 9999999999 78999998765 5789999999999853 444443 223578999999988764
No 67
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=2.5e-29 Score=173.92 Aligned_cols=135 Identities=27% Similarity=0.475 Sum_probs=116.7
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh
Q 031880 12 VGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK 90 (151)
Q Consensus 12 iG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (151)
+|+++||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+++|||+|+++|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888886555 45667788889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeeccC
Q 031880 91 ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~~ 148 (151)
.||..+ ..|+..+.+..+++|++|||||+|+.. +.+.. ...++.++++|+..+.+.
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~~~~~~~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKD-RKVKAKSITFHRKKNLQYYDISAKSNYNF 142 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccc-ccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999 889999998878999999999999864 22221 245677999999887653
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=5.9e-29 Score=171.97 Aligned_cols=141 Identities=23% Similarity=0.387 Sum_probs=113.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeee-eeEEEEECCeEEEEEEEeCCChhccccc--------ccccccC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~ 77 (151)
+||+++|+++||||||+++|..+.|...+.|+.... +...+..++..+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 489999999999999999999999988888887544 3456677888899999999997654321 2234789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccccccccC--------CCCCCCceeccceee
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWV 145 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~ 145 (151)
+|++++|||+++++||+.+ ..|++.+.+.. +++|+++||||+|+.+.+.+.. ...++.++++|+..+
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 9999999999999999999 88888876653 5799999999999976554432 234678899999988
Q ss_pred ccC
Q 031880 146 TND 148 (151)
Q Consensus 146 ~~~ 148 (151)
.|.
T Consensus 160 ~~v 162 (198)
T cd04142 160 WHI 162 (198)
T ss_pred CCH
Confidence 764
No 69
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=9e-29 Score=165.49 Aligned_cols=141 Identities=33% Similarity=0.585 Sum_probs=118.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|.++.+...+.++....+ ...+.+++..+.+++||+||++++...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998877777776554 456677788899999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|+..+.... ++.|+++|+||+|+...+.+.. ...+..++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENV 150 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999 88998887654 6899999999999976554432 233477899998877653
No 70
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.3e-28 Score=165.91 Aligned_cols=142 Identities=63% Similarity=1.065 Sum_probs=120.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+++|.+..+...+.++....+.......+..+.+++||+||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999988888888877777777788888999999999999988888888899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------------------CCCCCC-Cceeccceeecc
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------------------SGHPGA-TPITTSQVWVTN 147 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------------------~~~~~~-~~~~~s~~~~~~ 147 (151)
.+++.+|......|+..+.+...+.|+++|+||+|+.+.+... ....+. .++++|+.++.+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 9999999998788999988877789999999999997655321 112223 788998887754
Q ss_pred C
Q 031880 148 D 148 (151)
Q Consensus 148 ~ 148 (151)
.
T Consensus 161 i 161 (171)
T cd00157 161 V 161 (171)
T ss_pred H
Confidence 3
No 71
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=4.3e-29 Score=167.78 Aligned_cols=138 Identities=28% Similarity=0.464 Sum_probs=114.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc-ccccccccccCCcEEEEEEe
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~i~v~d 86 (151)
||+++|++|||||||+++++.+.+.+.+.++....+...+.+++..+.+++||+||++. +......+++++|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999988888888887666777777888889999999999985 34455677899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeec
Q 031880 87 LISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVT 146 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~ 146 (151)
++++.||..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|+..+.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 149 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDY 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCc
Confidence 9999999999 88998888754 4899999999999976554432 2245678999988763
No 72
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=1.1e-28 Score=166.49 Aligned_cols=143 Identities=29% Similarity=0.569 Sum_probs=119.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||+++|.++||||||++++....+...+.++.+..+ ...+..++....+.+||++|++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999988777777765544 4566678888899999999999998888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+.. ++.|+++|+||.|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999 89999987764 6899999999999975444332 234567899998877654
No 73
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=7.2e-30 Score=166.04 Aligned_cols=144 Identities=30% Similarity=0.500 Sum_probs=125.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEE-CCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+.+++++||++-||||||+++|..+++.+-..||.+..+ ..-+.+ .+..+++++|||.|+++|++.++.+++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 678999999999999999999999999988889987665 334444 478899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCcccccccccCC-------CCCCCceeccceeeccCC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPI-VLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTNDN 149 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i-ivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~~ 149 (151)
+|||++++.||+.+ +.|+.+..... +..++ ++||+|+||..+|++..+ ..++.++|+|+..+.|.+
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 99999999999999 99999887654 44554 699999999999999864 567889999999987754
No 74
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1e-28 Score=172.32 Aligned_cols=147 Identities=30% Similarity=0.551 Sum_probs=123.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (151)
|.....+||+++|+++||||||+++|....+...+.++....+ ...+.+++..+.+.+|||+|++.+...+..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7777889999999999999999999999988877777776554 446677888889999999999999988888999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 80 VFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++|||++++.+|..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.++. ...++.++++|+.++.+.
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999998 88988876654 5799999999999987655442 234567899998877653
No 75
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=6.1e-29 Score=167.63 Aligned_cols=142 Identities=34% Similarity=0.509 Sum_probs=121.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++|||||+++|..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999998888888887777777788888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCC-CCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHP-GATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~-~~~~~~~s~~~~~~~ 148 (151)
|+++++++..+ ..|...+.+.. .+.|+++++||.|+...+.+.. ... ...++++|+..+.+.
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCH
Confidence 99999999999 88888887643 5799999999999976654432 122 266899999887654
No 76
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1e-28 Score=172.40 Aligned_cols=143 Identities=32% Similarity=0.498 Sum_probs=118.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEE-CCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+.+||+++|+++||||||+++|..+.+...+.++.+..+ ...+.+ ++..+.+++|||+|++++...+..+++++++++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 368999999999999999999999998877777775444 445555 466789999999999999988888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.||..+ ..|+..+.+.. ...|++|||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 81 lv~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v 154 (211)
T cd04111 81 LVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154 (211)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 99999999999999 88999887654 3577899999999987655542 233477899999887653
No 77
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=164.40 Aligned_cols=143 Identities=34% Similarity=0.620 Sum_probs=127.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
...+|++++|..-||||||+-||+.++|...-..|....+ .+.+.+.+....++||||.|+++|-.+-+.+++++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4679999999999999999999999999888777775554 667888888999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++|+.||..+ +.|+.+++.... .+.+++||||+||+++|+++. +.-+..++++|++++..
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 99999999999999 999999998764 577899999999999999875 34567788999887653
No 78
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.2e-28 Score=169.48 Aligned_cols=141 Identities=35% Similarity=0.645 Sum_probs=117.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+||+++|+++||||||+++|..+.+. ..+.++....+. ..+.+++..+.+.+|||||++++...+..+++.++++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 356677765553 4567888889999999999999988888899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||++++.+|+.+ ..|+..+.+.. .+.|+++||||+|+...+.+.. ...+..++++|+..+.+.
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v 151 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNV 151 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999 88999988876 4789999999999975544332 234567899999887653
No 79
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.3e-28 Score=163.85 Aligned_cols=141 Identities=34% Similarity=0.575 Sum_probs=116.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC--CCCCCCccceeeee-eEEEEEC-CeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYIPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+||+++|++|||||||++++..+ .+..++.++.+..+ ...+.+. +..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67788888886554 3445554 56799999999999999888888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.+|..+ ..|+..+.+...+.|+++|+||+|+.+.+++.. ...++.++++|+..+.+.
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence 99999999999998 899999887767799999999999976544332 234566789988877654
No 80
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=2.2e-28 Score=168.26 Aligned_cols=141 Identities=34% Similarity=0.544 Sum_probs=116.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+||+++|+++||||||+++|..+.+.. .+.++.+..+ ...+.+++..+.+++||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 6778877665 45677888889999999999999998888899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc----cccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK----QFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||++++.+|+.+ ..|+..+....++.|+++|+||+|+.+.. ++.. ...+..++++|+..+.+.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999998 88999998876789999999999985421 2211 122355688888776543
No 81
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.6e-29 Score=170.32 Aligned_cols=122 Identities=73% Similarity=1.267 Sum_probs=116.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEEC-CeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+|++++|+..+|||+|+-.+..+.|+..|.||..+.|...+.++ +..+.+.+|||.|+++|+..+...+..+|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 46799999999999999999999999999999999999999999995 99999999999999999998888899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+||++.++.||.++...|+.++++++++.|+++||+|.||+++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC
Confidence 9999999999999999999999999999999999999999854
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=7e-28 Score=162.81 Aligned_cols=142 Identities=21% Similarity=0.297 Sum_probs=116.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.+.+||+++|++|||||||+++|+++.+. .++.+|....+. ..+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35789999999999999999999999998 888898877664 4567788888999999999999998888889999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCC-Cceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGA-TPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~-~~~~~s~~~~~~ 147 (151)
++|||++++.+|..+ ..|+..+... .+.|+++|+||+|+.+.+++.. ...+. .++++|+..+.+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 999999999999998 8888766432 4799999999999965543311 22233 358888887764
No 83
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-30 Score=168.27 Aligned_cols=143 Identities=40% Similarity=0.605 Sum_probs=125.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC---------CeEEEEEEEeCCChhccccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD---------GSTVNLGLWDTAGQEDYNRLRPLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~i~d~~g~~~~~~~~~~~ 74 (151)
+-+|++.+|++|||||||+.++..++|..+.+.|.+..+ .+.+.++ +..+.+++|||.|+++|++...++
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 457889999999999999999999999999999987665 3444432 356889999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceee
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWV 145 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~ 145 (151)
+++|-+++++||+++.+||.++ ..|+..++-. +.+..++++|||+||++.|+++. +..+..|||+|+..+
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999 9999988754 47888999999999999999875 567899999999888
Q ss_pred ccC
Q 031880 146 TND 148 (151)
Q Consensus 146 ~~~ 148 (151)
.|.
T Consensus 167 ~Nv 169 (219)
T KOG0081|consen 167 TNV 169 (219)
T ss_pred cCH
Confidence 764
No 84
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=3.4e-28 Score=170.33 Aligned_cols=113 Identities=32% Similarity=0.520 Sum_probs=93.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|.++||||||+++|..+.|.. +.++.+..+... ....+.+.+|||+|++.|...+..++++++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998864 466665443221 1245789999999999999999899999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccc
Q 031880 87 LISKASYENVYKKWIPELRHY-APNVPIVLVGTKLDLRE 124 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~ 124 (151)
+++++||..+ ..|...+.+. .++.|++|||||+|+.+
T Consensus 77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999 6666555544 35789999999999975
No 85
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=4.7e-28 Score=161.85 Aligned_cols=141 Identities=36% Similarity=0.555 Sum_probs=116.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.||+++|+++||||||+++|.+..+...+.++....+ ...+..++..+.+++||+||++++...+..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988777677765444 556667787889999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.+|..+ ..|+..+.+.. .+.|+++++||+|+.+.+.... ...+..++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNV 150 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 99999999999 88999887654 3699999999999954443332 234567888888877653
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=7.4e-28 Score=161.17 Aligned_cols=140 Identities=41% Similarity=0.687 Sum_probs=117.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++++......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999888777777776554 446667788889999999999999988889999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+.+++.. ...++.++++|+.++.+
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 149 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTN 149 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999 77999988766 6899999999999876443321 23456788998887654
No 87
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=174.01 Aligned_cols=122 Identities=20% Similarity=0.382 Sum_probs=106.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC-------------CeEEEEEEEeCCChhccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~d~~g~~~~~ 68 (151)
+...+||+++|+.|||||||+++|..+.+...+.+|.+..+ .+.+.++ +..+.++||||+|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34679999999999999999999999999888888887665 3445543 256889999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCccccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-------------PNVPIVLVGTKLDLRED 125 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~~iivv~nK~Dl~~~ 125 (151)
.++..++++++++|+|||++++.+|+.+ ..|++.+.+.. .++|++|||||+||.+.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999 99999998753 25899999999999764
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=1.4e-27 Score=159.80 Aligned_cols=142 Identities=37% Similarity=0.621 Sum_probs=118.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.+||+++|+++||||||++++.++.+...+.++....+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998776777776554 56777888889999999999999988888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
||.+++.+|..+ ..|+..+.... ++.|+++++||+|+...+.... ...+..++++|+..+.+.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENV 151 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999 89999887765 6789999999999874433221 233467899998876553
No 89
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=5.4e-28 Score=162.65 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=109.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 88 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (151)
|+++|++|||||||+++|.++.+...+.+|.+... ..++...+.+++||++|+++++..+..+++++|++++|||.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999888888888875432 234555688999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----------CCCCCCceecccee
Q 031880 89 SKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----------GHPGATPITTSQVW 144 (151)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----------~~~~~~~~~~s~~~ 144 (151)
++.+|..+ ..|+..+.+..++.|+++|+||+|+...+.+.. ...+..++++|+..
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 99999998 778777765557899999999999977654421 23456678888776
No 90
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1.3e-27 Score=163.88 Aligned_cols=143 Identities=48% Similarity=0.789 Sum_probs=118.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+.||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+||++|++.+.......+..+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 36999999999999999999998888877777777777667777888889999999999988877777789999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc----------ccccC-------CCCC-CCceeccceeecc
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED----------KQFSS-------GHPG-ATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----------~~~~~-------~~~~-~~~~~~s~~~~~~ 147 (151)
|+++.++|..+...|+..+.+..++.|+++||||+|+.+. +.+.. ...+ ..++++|+..+.+
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 9999999999955799999887788999999999998542 11110 1122 4689999988876
Q ss_pred C
Q 031880 148 D 148 (151)
Q Consensus 148 ~ 148 (151)
.
T Consensus 161 v 161 (187)
T cd04129 161 V 161 (187)
T ss_pred H
Confidence 4
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=7.7e-28 Score=169.00 Aligned_cols=139 Identities=27% Similarity=0.357 Sum_probs=112.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCcccee-eeeeEEEEECCeEEEEEEEeCCChhccccccccccc-CCcEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFLL 83 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~i~ 83 (151)
+||+++|++|||||||+++|..+.+. ..+.++.. +.+...+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 48999999999999999999988876 66666665 45567788888889999999999982 23344566 8999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+..+ ..++.++++|+..+.+.
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 9999999999999 88998887754 57999999999999776665432 23567899999887654
No 92
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-28 Score=155.71 Aligned_cols=144 Identities=29% Similarity=0.555 Sum_probs=129.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
...+|.+++|+.|+|||+|+++|...+|-.+...+.+..+ ...+.+.+..++++||||.|+++|+.....+++++-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 3678999999999999999999999999888888888777 456778999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++.+++++.+ ..|+...+..- ++..++++|||.||+.+|.+.. ++.+..++++|++.+.|.
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence 99999999999999 99999887764 6788999999999999998874 577888999999988764
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=6.5e-30 Score=161.38 Aligned_cols=139 Identities=34% Similarity=0.609 Sum_probs=122.6
Q ss_pred EEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 10 VTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 10 ~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
+++|++++|||+|+-||..+.|- ...++|.+..+. +-+..++..+++++|||.|+++|++....+++++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999999888774 456677777764 4666889999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccCC
Q 031880 88 ISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~~ 149 (151)
.++.||+++ +.|+.++.++. ..+.+.++|||||+.++|.+.. +..++.++|+|++.+.|.+
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVD 149 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHh
Confidence 999999999 99999999987 4677899999999988887764 4678899999999998864
No 94
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.3e-27 Score=160.88 Aligned_cols=141 Identities=26% Similarity=0.407 Sum_probs=111.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|+++||||||+++|..+.+...+.++ ...+.....+.+..+.+.+|||+|.+.+...+..++..++++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999887654433 23334444566778999999999998887777777899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc---C-------CCCC-CCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS---S-------GHPG-ATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~---~-------~~~~-~~~~~~s~~~~~~~ 148 (151)
++++.+|..+...|+..+.+...+.|+++|+||+|+.+.+... . .... ..++++|+.++.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV 152 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence 9999999998567999888776789999999999997654421 1 1111 35789999887654
No 95
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=3.1e-27 Score=164.85 Aligned_cols=143 Identities=29% Similarity=0.509 Sum_probs=116.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||+++|++|||||||+++|....+. .+.++....+ ...+..++..+.+.+|||||+++|...+..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 5689999999999999999999988763 5566665554 4466677888999999999999999998899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++++|..+...|...+.... .+.|+++|+||+|+...+.+.. ...++.++++|+..+.+.
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999566877776543 4689999999999976554432 234566899999877653
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=3.6e-27 Score=159.02 Aligned_cols=141 Identities=35% Similarity=0.596 Sum_probs=115.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||++++.+..+...+.++....+ ...+.+.+..+.+.+||+||++.+...+..++++++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988777777765544 456677888899999999999999888888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCC-----CCCEEEEeeCCccccccccc--------CCCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYAP-----NVPIVLVGTKLDLREDKQFS--------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-----~~~iivv~nK~Dl~~~~~~~--------~~~~~~~~~~~s~~~~~~~ 148 (151)
|++++.++..+ ..|...+.+... +.|+++|+||+|+.+++... .......++++|+.++.+.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence 99999999998 788887665543 78999999999997433221 1233367888888877654
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=1.3e-27 Score=161.38 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=105.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
++.+||+++|+++||||||+++|..+.+. .+.+|.+..+. .+. ...+.+++|||+|+++++..+..+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56799999999999999999999987764 35566654432 222 245889999999999998888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHY-APNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+...|.+.+... .++.|++||+||+|+.+.. ++.. ......++++|+.++.+.
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 158 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCCh
Confidence 999999999999844444444432 3678999999999986421 1111 112235789999888764
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=3.3e-27 Score=157.91 Aligned_cols=141 Identities=36% Similarity=0.570 Sum_probs=119.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||++++....+...+.++....+......++..+.+.+||+||+.++...+..+++.++++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 48999999999999999999999988888888877777777888888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++.+|..+ ..|...+.+.. .+.|+++|+||+|+...+.... ...+..++++|+..+.+.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNV 150 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCH
Confidence 9999999999 77777777653 5799999999999976332221 233467889998877653
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=5.2e-27 Score=156.86 Aligned_cols=141 Identities=31% Similarity=0.575 Sum_probs=115.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||+++|.+..+...+.++....+. ..+.+++..+.+.+||+||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887767777766553 45567777899999999999999888888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc------CCCCCCCceeccceeeccC
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~~ 148 (151)
|.+++.+|..+ ..|+..+.+.. .+.|+++|+||+|+....... ....++.++++|+..+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGV 150 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 99999999998 77999888765 579999999999987221111 1234677899998887653
No 100
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.1e-26 Score=156.52 Aligned_cols=147 Identities=30% Similarity=0.539 Sum_probs=119.6
Q ss_pred CCC-cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceee-eeeEEEEECCeEEEEEEEeCCChhcccccccccccCC
Q 031880 1 MST-ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (151)
Q Consensus 1 m~~-~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 78 (151)
|.+ ....||+++|++|||||||++++..+.+...+.++... .....+.+++..+.+.+||++|++.+...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 553 45699999999999999999999988877666666643 3345677788888999999999999988888899999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 79 DVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+++.. ......++++|+..+.+.
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNV 157 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 999999999999999998 88998887765 3689999999999976665442 123356788888877653
No 101
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=8.4e-27 Score=163.09 Aligned_cols=146 Identities=29% Similarity=0.473 Sum_probs=121.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (151)
|..+..+||+++|++|||||||+++++.+.+...+.++....+. ..+..++..+.+++||++|++++...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 35667899999999999999999999998888888888866653 34556778899999999999999888888899999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-----CCCCCCCceeccceeecc
Q 031880 80 VFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-----SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~s~~~~~~ 147 (151)
++++|||++++.+|..+ ..|+..+.+..++.|++++|||+|+.+..... ....+..++++|+..+.+
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYN 155 (215)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999999999 89999998877889999999999986432111 123446678888887654
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=1e-26 Score=155.15 Aligned_cols=140 Identities=36% Similarity=0.648 Sum_probs=114.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|++|+|||||+++|+.+.+...+.++....+ ...+...+..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988766666664444 445666777789999999999999988888899999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 86 SLISKASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|++++.++..+ ..|+..+.+... +.|+++|+||+|+...+.+.. ...+..++++|+.++.+
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g 149 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG 149 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998 889998887653 689999999999976544322 22355678888877654
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=3.7e-27 Score=157.82 Aligned_cols=137 Identities=15% Similarity=0.220 Sum_probs=103.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|.++||||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999888776 46676654432 2333 45889999999999999888899999999999999
Q ss_pred CCChhHHHHHHHHHHHHH-hhh-CCCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPEL-RHY-APNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~-~~~-~~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++.+|..+ ..|+..+ .+. ..+.|++|++||+|+.+.. ++.. ......++++|+.++.+.
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 77 SNDRERIGEA-REELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred CCCHHHHHHH-HHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 9999999999 5544444 332 2468999999999996432 2111 112334568888887653
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=5e-27 Score=159.44 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=105.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
++.+||+++|+++||||||+++|..+.+. .+.||.+..+. .+.. ..+.+++||++|+++++..+..++++++++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 45799999999999999999999877774 45666655443 2333 35789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHH-hhh-CCCCCEEEEeeCCcccccc---cccCC-------CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPEL-RHY-APNVPIVLVGTKLDLREDK---QFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~~iivv~nK~Dl~~~~---~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.++... ..|+..+ .+. .++.|++||+||+|+.+.. ++... .....++++|+..+.+.
T Consensus 87 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (175)
T smart00177 87 VVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred EEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCH
Confidence 9999999999998 5555544 332 3578999999999997542 11111 12233567888777653
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=1.6e-26 Score=159.84 Aligned_cols=140 Identities=29% Similarity=0.397 Sum_probs=115.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
||+++|++|||||||+++|+.+.+...+.++........+.+.+..+.+++||++|+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999888777777655566777788888999999999999988888889999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccc-cccccC--------CCCCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLRE-DKQFSS--------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~-~~~~~~--------~~~~~~~~~~s~~~~~~~ 148 (151)
+++.+|..+ ..|+..+.+.. .+.|+++|+||.|+.. .+.+.. ...+..++++|+.++.+.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENV 151 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCH
Confidence 999999999 88888877654 4799999999999865 233321 122456788888877653
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=9.1e-27 Score=159.01 Aligned_cols=139 Identities=16% Similarity=0.225 Sum_probs=104.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
++.+||+++|+++||||||++++..+.+. .+.||.+..+. .+ +...+.+++||+||+++++..+..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999987775 45666654432 23 3345789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHH-hh-hCCCCCEEEEeeCCcccccccccC-----C-----CCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPEL-RH-YAPNVPIVLVGTKLDLREDKQFSS-----G-----HPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~-~~~~~~iivv~nK~Dl~~~~~~~~-----~-----~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..++..+ .+ ..++.|++||+||+|+++...... . .....++++|+.++.+
T Consensus 91 V~D~s~~~s~~~~-~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~g 165 (181)
T PLN00223 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
T ss_pred EEeCCcHHHHHHH-HHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCC
Confidence 9999999999988 4444443 32 235899999999999975432211 0 1112345788877754
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=1.7e-26 Score=153.72 Aligned_cols=140 Identities=37% Similarity=0.608 Sum_probs=116.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
||+++|++|||||||++++++..+...+.++....+......++..+.+++||+||++.+...+..+++.++++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999888888888888766666777777789999999999999888888889999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++++++..+ ..|...+.+... ..|+++|+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 149 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINI 149 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCH
Confidence 999999999 777777766554 899999999999876443321 223356788888876543
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=2e-26 Score=157.47 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=104.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|+++||||||++++..+.+.. +.+|.+..+. .+.. ..+.+++||++|+++++..+..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 346899999999999999999998877754 5666654443 2333 45789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhh-hCCCCCEEEEeeCCcccccc---cccCC-------CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRH-YAPNVPIVLVGTKLDLREDK---QFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~---~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.++..+...+...+.. ...+.|++||+||.|+.+.. ++... .....++++|+.++.+.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 99999999999984444444333 22578999999999986532 11111 11123457888777553
No 109
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=4.8e-26 Score=154.94 Aligned_cols=140 Identities=31% Similarity=0.464 Sum_probs=114.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
.||+++|++|||||||++++....+...+.++....+...+..++..+.+++||+||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999888777888766666677778888899999999999998888889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 87 LISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++..++..+ ..|+..+.+.. .+.|+++|+||+|+...+.+.. +..+..++++|+..+.+
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENEN 150 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999999 66666665543 4789999999999975443321 23345678888776643
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=1.3e-25 Score=148.82 Aligned_cols=140 Identities=40% Similarity=0.729 Sum_probs=115.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+++||||||++++.+..+...+.++....+ ...+..++..+.+.+||+||...+...+..++++++++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877677766554 456667777889999999999999888888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|.+++.++..+ ..|+..+.... .+.|+++++||+|+...+.... ......++++|+..+.+
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 149 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGEN 149 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 99999999999 77999888876 6799999999999963332221 23456788888877643
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=1.2e-25 Score=152.26 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=107.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
++..+||+++|+++||||||+++|....+ ..+.++.+.. ...+..+ .+.+.+||+||++.++..+..+++++++++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35678999999999999999999997744 3455555422 2334444 478899999999998888888899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccccccc---C-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFS---S-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~---~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.+|... ..|+..+.+. ..+.|+++|+||+|+.+..... . ......++++|+..+.+.
T Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 87 WVVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 99999999999988 6666665432 2689999999999996533211 1 123456899999887653
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=1.8e-25 Score=152.82 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=107.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEE-CCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+.+||+++|++|||||||++++..+.+... .++.+... ...+.. ++..+.+.+|||+|++++...+..+++++++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877644 45543332 333333 346789999999999999888888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc--------CCC---CCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS--------SGH---PGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~--------~~~---~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+..... .+. ....++++|+..+.+.
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 99999999999888 77777766543 478999999999986432110 011 1234678888877653
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=4e-26 Score=154.13 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=103.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
||+++|.++||||||+++|....+.. +.+|.+..+. .+ +...+.+++||+||+++++..+..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999887653 5666554442 23 33457899999999999988888899999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccccccc---C--CC------CCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFS---S--GH------PGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~---~--~~------~~~~~~~~s~~~~~~~ 148 (151)
+++.++..+ ..|+..+.+. ..+.|++||+||+|+.+..... . .. ....++++|+.++.+.
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 999999998 6777766543 2468999999999996432111 1 11 1125678898887654
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=1.2e-25 Score=150.17 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=103.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+|+++|+++||||||+++|.... +...+.++.+.... .. ....+.+++|||||++++...+..+++.++++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 35556666653322 22 2345789999999999999998899999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhh----CCCCCEEEEeeCCccccccc---ccC--C-----CCCCCceeccceeeccC
Q 031880 87 LISKASYENVYKKWIPELRHY----APNVPIVLVGTKLDLREDKQ---FSS--G-----HPGATPITTSQVWVTND 148 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~Dl~~~~~---~~~--~-----~~~~~~~~~s~~~~~~~ 148 (151)
++++.++..+ ..|+..+.+. ..+.|+++|+||+|+.+... +.. . .....++++|+..+.+.
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 9999999888 6777766442 14799999999999965321 111 1 11234688888877654
No 115
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=5e-25 Score=140.56 Aligned_cols=114 Identities=33% Similarity=0.563 Sum_probs=87.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
||+|+|++|||||||+++|++..+. ..+.+.....+. ...........+++||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 112222233332 3444566666799999999998888877789999999999
Q ss_pred EeCCChhHHHHHH--HHHHHHHhhhCCCCCEEEEeeCCc
Q 031880 85 FSLISKASYENVY--KKWIPELRHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 85 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D 121 (151)
||++++.||..+. ..|+..+....+++|++|||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999873 236777776667899999999998
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=7.6e-25 Score=147.68 Aligned_cols=133 Identities=18% Similarity=0.227 Sum_probs=104.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
+|+++|+++||||||+++|.+. +...+.+|.+.. ...+..+ .+.+++||+||+++++..+..++++++++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666777777654 2344443 47889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc--------CC-----CCCCCceeccceee
Q 031880 88 ISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS--------SG-----HPGATPITTSQVWV 145 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~--------~~-----~~~~~~~~~s~~~~ 145 (151)
++..++..+ ..|+..+.+.. .+.|+++|+||+|+++.+... .+ .....++++|+.++
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999998 77777776542 578999999999998765211 01 12245666888776
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.92 E-value=7.7e-25 Score=148.54 Aligned_cols=140 Identities=18% Similarity=0.238 Sum_probs=104.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
...+||+++|++++|||||++++..+.+.. +.++.+..+. ....+ ...+.+||+||++.+...+..+++++|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 357899999999999999999999887764 4566554432 33333 4789999999999998888888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHH-hhh-CCCCCEEEEeeCCccccc---ccccCC-------CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPEL-RHY-APNVPIVLVGTKLDLRED---KQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~~iivv~nK~Dl~~~---~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.++... ..++..+ ... ..+.|+++++||+|+.+. .++... .....++++|+.++.+.
T Consensus 89 V~D~s~~~~~~~~-~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 89 VIDSTDRERLPLT-KEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCH
Confidence 9999999999888 4444444 322 257999999999998642 111111 12334788888887653
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=1.4e-24 Score=144.88 Aligned_cols=137 Identities=20% Similarity=0.263 Sum_probs=102.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
+|+++|++|||||||+++|....+.. +.++.+..+ ..+.. +..+.+.+||++|++.+...+..++..++++++|||.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988754 345554332 22323 3457899999999999888888889999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccc---ccccC--------CCCCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLRED---KQFSS--------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~---~~~~~--------~~~~~~~~~~s~~~~~~~ 148 (151)
+++.++... ..|+..+.+.. .+.|+++|+||+|+.+. +++.. ...+..++++|+..+.+.
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGL 150 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCCh
Confidence 999999988 66666554322 58999999999998642 22211 112234788888887654
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=1.5e-24 Score=144.76 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=100.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
||+++|+++||||||++++..+.+. .+.++.+..+. .+. ...+.+++|||||+++++..+..+++.++++++|+|.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999887765 34555543332 232 3457899999999999998888899999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccccc---cccCC-------CCCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHY-APNVPIVLVGTKLDLREDK---QFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~---~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
+++.++......|...+.+. ..+.|+++|+||+|+.+.. ++... ..+..++++|+..+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 99988887734444444432 2579999999999986532 22111 11234889998877653
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=3.5e-24 Score=142.83 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=102.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
||+++|.+|||||||+++++++.+ ..+.++..... ..+.++ .+.+.+||+||++.+...+..+++.++++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998873 34445544332 223333 47899999999999998888899999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccc---cccCC-------CCCCCceeccceeeccC
Q 031880 88 ISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDK---QFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~---~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
+++.++... ..|+..+.+.. .+.|+++|+||+|+.+.+ ++... .....++++|+.++.+.
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 999999998 66666554432 589999999999987643 22111 23345788888876553
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=1.1e-23 Score=141.44 Aligned_cols=137 Identities=21% Similarity=0.319 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC------CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+|+++|++|||||||+++|..... ...+.++....+ ..+.++ ...+.+|||||++.+...+..+++.++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999986422 122233333222 233444 47889999999999988888889999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc------C------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS------S------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~------~------~~~~~~~~~~s~~~~~~ 147 (151)
++|+|.+++.++... ..|+..+.+.. .+.|+++++||+|+.+..... . ......++++|+.++.+
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 999999999899888 66666655432 579999999999986542111 1 11234678888888765
Q ss_pred C
Q 031880 148 D 148 (151)
Q Consensus 148 ~ 148 (151)
.
T Consensus 157 v 157 (167)
T cd04160 157 V 157 (167)
T ss_pred H
Confidence 4
No 122
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=2.5e-23 Score=145.61 Aligned_cols=123 Identities=40% Similarity=0.701 Sum_probs=106.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+||+++|+.|||||||+++|..+.+...+.++....+.. .....+..+++.+|||+|+++++..+..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 345999999999999999999999999998888887666544 4444444789999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDK 126 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~ 126 (151)
+|||.++..++..+...|...+.... .+.|+++|+||+|+...+
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 99999996776666699999999887 479999999999998764
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=2.3e-23 Score=138.07 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=104.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 88 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (151)
|+++|++|||||||++++.+..+...+.++....+. .+...+ +.+.+||+||+..++..+..+++.++++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 799999999999999999999988888887765543 233333 78999999999999988888999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccccccc---C-------CCCCCCceeccceeeccC
Q 031880 89 SKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFS---S-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~---~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+..++... ..|+..+.+. ..+.|+++|+||+|+.+..... . ......++++|+..+.+.
T Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 79 DRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 99999887 5555554332 2578999999999987543221 0 112244678887776553
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=1.6e-23 Score=143.74 Aligned_cols=116 Identities=21% Similarity=0.360 Sum_probs=92.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+..||+++|++|||||||++++.++.+. .+.++.... ...+.+++ +.+.+||+||+..++..+..+++.++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999987763 455555433 23444554 678899999999888888888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLRE 124 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~ 124 (151)
|+|+++..++... ..|+..+.+.. .+.|+++++||+|+.+
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 9999999999887 56666654432 5799999999999863
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-25 Score=147.60 Aligned_cols=143 Identities=35% Similarity=0.519 Sum_probs=123.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.-+|++++|..++||||+++|++.+.|...|..++...+ ...+.+..+.+++.+||+.|+++|+....++++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 568999999999999999999999999999999987666 4466677788889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
||+-+|+.||+.. ..|+..+......+|.++|-||+|+.++.++..+ .-.+.++-+|.++.+|.
T Consensus 99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 9999999999999 9999999999999999999999999877666542 22344566666665554
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=4.5e-23 Score=141.12 Aligned_cols=116 Identities=18% Similarity=0.307 Sum_probs=91.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.++|+++|.+|||||||++++.++.+. .+.++.... ...+..+ .+++.+||+||++.++..+..++.+++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT-SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999987654 233443332 2233333 3778999999999998888899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLRE 124 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~ 124 (151)
|+|++++.++... ..++..+.+. ..+.|+++|+||+|++.
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999999888 5555555432 25789999999999864
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=3.1e-22 Score=132.15 Aligned_cols=142 Identities=39% Similarity=0.531 Sum_probs=110.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.+||+++|.+|+|||||++++....+...+.++....+.. .+..++..+.+.+||+||+.++...+..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999988766666666555433 456677668899999999999988888888999999999
Q ss_pred EeCCCh-hHHHHHHHHHHHHHhhhCC-CCCEEEEeeCCccccccc------ccCCCCCCCceeccceeecc
Q 031880 85 FSLISK-ASYENVYKKWIPELRHYAP-NVPIVLVGTKLDLREDKQ------FSSGHPGATPITTSQVWVTN 147 (151)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~~~~~------~~~~~~~~~~~~~s~~~~~~ 147 (151)
+|+... .++......|...+.+... +.|+++++||+|+...+. .........++++|+..+.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKN 151 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCC
Confidence 998877 7777764477777776665 889999999999876421 11233445578888877754
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=1.2e-22 Score=137.96 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=95.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-------CCCCCccce------eeeee-E--EEEE---CCeEEEEEEEeCCChhccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYIPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~-------~~~~~~~~~------~~~~~-~--~~~~---~~~~~~~~i~d~~g~~~~~ 68 (151)
+|+++|+++||||||+++|++.. +...+.++. +..+. . ...+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999999732 222222222 11111 1 1222 5667889999999999998
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-----cCCCCC---CCceec
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-----SSGHPG---ATPITT 140 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-----~~~~~~---~~~~~~ 140 (151)
..+..+++.+|++|+|||+++..++... ..|..... .++|+++|+||+|+.+.+.. ..+..+ ..++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILV 157 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEe
Confidence 8888889999999999999987777666 55554432 37899999999998643211 011112 236888
Q ss_pred cceeeccC
Q 031880 141 SQVWVTND 148 (151)
Q Consensus 141 s~~~~~~~ 148 (151)
|+..+.+.
T Consensus 158 Sa~~g~gi 165 (179)
T cd01890 158 SAKTGLGV 165 (179)
T ss_pred eccCCCCH
Confidence 88887654
No 129
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.88 E-value=8.8e-22 Score=133.74 Aligned_cols=118 Identities=23% Similarity=0.386 Sum_probs=94.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|..+||||||++++..+... ...||.+... ..+..++ +.+.+||.+|+..++..|..++.+++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 478999999999999999999999976543 2455544332 2344444 67899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE 124 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~ 124 (151)
+|+|.++.+.+.+....+...+.+.. .+.|++|++||+|+++
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 99999999988888455555454322 5899999999999875
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.88 E-value=1.5e-21 Score=131.30 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=92.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CccceeeeeeEEEEECCeEEEEEEEeCCChhccccccc---------ccccC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYRG 77 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~---------~~~~~ 77 (151)
+|+++|.+++|||||+++|.+..+... +..++........ ....+.+.+|||||......... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999998876422 2121111111122 22347899999999743211100 11133
Q ss_pred CcEEEEEEeCCChhHH--HHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-----CCCCCCCceeccceeeccC
Q 031880 78 ADVFLLAFSLISKASY--ENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-----SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~s~~~~~~~ 148 (151)
+|++++|+|.+++.++ ... ..|+..+.+...+.|+++|+||+|+.+.+.+. .......++++|+..+.+.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCH
Confidence 6899999999887654 554 56777777655689999999999997654433 1234556788998887653
No 131
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.5e-21 Score=135.48 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=87.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCC-cEEEEEEe
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFLLAFS 86 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~i~v~d 86 (151)
+|+++|+++||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988766544442221111221123457799999999999988887888888 99999999
Q ss_pred CCCh-hHHHHHHHHHHHHHhh---hCCCCCEEEEeeCCcccc
Q 031880 87 LISK-ASYENVYKKWIPELRH---YAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~ 124 (151)
..+. .++......|+..+.. ..+++|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9987 6777764444444332 235899999999999864
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=3.2e-21 Score=129.80 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=92.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhc----cccccccc---ccCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~~~~~ 79 (151)
+|+++|.++||||||+++|.+.... ..+..+........+..++. ..+.+|||||..+ .+.....+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999975432 11112211111112223332 4788999999642 21222223 34699
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccccC------CC-CCCCceeccceeecc
Q 031880 80 VFLLAFSLISK-ASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFSS------GH-PGATPITTSQVWVTN 147 (151)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~~------~~-~~~~~~~~s~~~~~~ 147 (151)
++++|+|++++ .++..+ ..|.+.+.+.. .+.|+++|+||+|+.+...+.. .. ....++++|+..+.+
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998 789988 88888887654 3689999999999865444321 12 355678888877654
No 133
>PTZ00099 rab6; Provisional
Probab=99.86 E-value=3e-21 Score=131.23 Aligned_cols=119 Identities=31% Similarity=0.471 Sum_probs=98.9
Q ss_pred CCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh
Q 031880 29 NTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHY 107 (151)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (151)
+.|.+.+.+|.+..+ ...+.+++..+.+.||||+|+++++..+..+++++|++|+|||++++.+|..+ ..|+..+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 457778888987665 55678889999999999999999999999999999999999999999999999 8899988765
Q ss_pred C-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 108 A-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 108 ~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
. ++.|++|||||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNI 130 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 4 5789999999999976554432 234556889999887653
No 134
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.86 E-value=5.6e-21 Score=124.57 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=94.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+++++|+++|..++||||++++|.+.. .....|+.+... +.. ..+.+.+++||..|+...+..|+.||..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTL--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEE--EecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 4569999999999999999999999866 333344444332 222 334588999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~ 123 (151)
+|+|.+++..++.....+.+.+.... .+.|++|++||.|++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 99999999999888555555554332 578999999999998
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.86 E-value=4.3e-21 Score=133.16 Aligned_cols=141 Identities=17% Similarity=0.165 Sum_probs=96.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCC--CccceeeeeeEEEEECCeEEEEEEEeCCChhcc---------ccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRP 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~ 72 (151)
...++|+++|++|||||||++++.+..+... ..++. ......+.+.+. ..+.+|||||..+. ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL-DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec-cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 3457999999999999999999998764322 12222 222233334332 36889999997321 1111
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccccccc--CCCCCCCceeccceeeccC
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFS--SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~--~~~~~~~~~~~s~~~~~~~ 148 (151)
..+..+|++++|+|.+++.++... ..|...+.... .+.|+++|+||+|+.+..... .......++++|+..+.+.
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCH
Confidence 125689999999999998888877 77777776654 468999999999997655432 1233456788888877653
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.86 E-value=3.9e-21 Score=129.84 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=89.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.++|+++|++|||||||++++.+..+. .+.++.+.. ...+..++ ..+.+||++|...+...+..+++.++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 45789999999999999999999987653 334444322 22333444 678899999998888887788899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLRED 125 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~ 125 (151)
|+|+++..++... ..|...+.+. ..++|+++++||+|+.+.
T Consensus 88 v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 88 VIDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 9999999999887 4444444322 247999999999998654
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=3e-21 Score=129.00 Aligned_cols=133 Identities=22% Similarity=0.200 Sum_probs=87.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC---CCCCCCccc--eeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYIPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+.|+++|+++||||||+++|.+. .+..++.+. ....+ ..+.+.+ ...+.+|||||++++.......++.+|++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 36899999999999999999963 232222222 22221 2333332 35789999999998876656678899999
Q ss_pred EEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc---cc-------CC--CCCCCceeccceeec
Q 031880 82 LLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ---FS-------SG--HPGATPITTSQVWVT 146 (151)
Q Consensus 82 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~-------~~--~~~~~~~~~s~~~~~ 146 (151)
++|+|+++ .++...+ . .+... ...|+++|+||+|+.+... .. .. .....++++|+..+.
T Consensus 79 i~V~d~~~~~~~~~~~~~-~----~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 79 LLVVAADEGIMPQTREHL-E----ILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEEECCCCccHhHHHHH-H----HHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 99999986 3444333 2 22221 2348999999999965421 10 11 135678888887765
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 153 ~ 153 (164)
T cd04171 153 G 153 (164)
T ss_pred C
Confidence 4
No 138
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-20 Score=122.00 Aligned_cols=125 Identities=30% Similarity=0.426 Sum_probs=105.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEEC-CeEEEEEEEeCCChhcc-cccccccccCCcE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~ 80 (151)
+-.|++++|..++|||+++.+++.+.. ..++.+|.++.|...+..+ +..-.+.++||.|.... ..+-..++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 567999999999999999999997654 3467888899998877755 55667899999998777 5566778899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS 130 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~ 130 (151)
+++||+..+++||+.+ +.+...|.+.. +.+|+++++||+|+.+++++..
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 9999999999999998 77777887755 4799999999999988877764
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=5.9e-21 Score=131.59 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=94.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhc--CCCCCCCc------------cceeeee-eEEEEECCeEEEEEEEeCCChhcccccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYI------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 71 (151)
-+|+++|.++||||||+++|+. +.+...+. .+.+... .....+....+.+.+|||||+++|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 45543321 1111111 2233344456789999999999998888
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc--c-------------CCCCCCC
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF--S-------------SGHPGAT 136 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~-------------~~~~~~~ 136 (151)
..+++.+|++++|||+++.. +... ..|+..+.. .++|+++|+||+|+.+.+.. . .+..+..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 88999999999999998642 2222 333444433 37899999999998643221 0 0223567
Q ss_pred ceeccceeeccC
Q 031880 137 PITTSQVWVTND 148 (151)
Q Consensus 137 ~~~~s~~~~~~~ 148 (151)
++.+|+..+.+.
T Consensus 159 iv~~Sa~~g~~~ 170 (194)
T cd01891 159 VLYASAKNGWAS 170 (194)
T ss_pred EEEeehhccccc
Confidence 788888877654
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.84 E-value=3.8e-20 Score=120.91 Aligned_cols=136 Identities=41% Similarity=0.707 Sum_probs=101.9
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCC
Q 031880 11 TVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS 89 (151)
Q Consensus 11 viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (151)
++|++|+|||||++++..... .....++....+............+.+||+||...+......+++.++++++|+|.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4454555544445566666677899999999998887777778899999999999999
Q ss_pred hhHHHHHHHHH--HHHHhhhCCCCCEEEEeeCCccccccccc--------CCCCCCCceeccceeecc
Q 031880 90 KASYENVYKKW--IPELRHYAPNVPIVLVGTKLDLREDKQFS--------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 90 ~~s~~~~~~~~--~~~~~~~~~~~~iivv~nK~Dl~~~~~~~--------~~~~~~~~~~~s~~~~~~ 147 (151)
+.++..+ ..| .........+.|+++++||+|+....... .......++++|+..+.+
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 9999888 555 23333334689999999999986543321 234556677877766543
No 141
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=5.5e-20 Score=121.86 Aligned_cols=133 Identities=25% Similarity=0.263 Sum_probs=93.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc--------cccccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 76 (151)
++|+++|++|+|||||++++.+... .....++...........++ ..+.+|||||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999998754 22233333332233444443 57889999997655432 123567
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCCCCCCCceeccceeecc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSGHPGATPITTSQVWVTN 147 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (151)
.+|++++|+|++++.+.... ..+.. ..+.|+++|+||+|+.+............++++|+.++.+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCC
Confidence 89999999999987777665 43333 3478999999999997655554444556678888877654
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=1.7e-20 Score=139.60 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=98.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCCh---------hccccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ---------EDYNRLRPLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~---------~~~~~~~~~~ 74 (151)
..++|+++|.+++|||||+++|.+.... .+...++.+.....+.+.+ ...+.+|||+|. +.|+... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987643 2333344444455555532 247889999997 2232222 24
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccCC-CCCCCceeccceeeccC
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSSG-HPGATPITTSQVWVTND 148 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~~-~~~~~~~~~s~~~~~~~ 148 (151)
+.++|++++|+|++++.++..+ ..|...+.+.. .+.|+++|+||+|+.+.+.+... .....++.+|+.++.+.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCH
Confidence 7789999999999999888877 66776666654 47899999999999754443221 11234678888777553
No 143
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=2.1e-20 Score=143.16 Aligned_cols=134 Identities=24% Similarity=0.258 Sum_probs=98.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc--------cccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 74 (151)
..++|+++|.+++|||||+++|++... .....+++.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 357999999999999999999998653 44555555555566666665 46789999998655432 1235
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCCCCCCCceeccceeecc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSGHPGATPITTSQVWVTN 147 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (151)
++.+|++++|||.+++.++... ..|.. ..+.|+++|+||+|+.+.+... ......++++|+.++.+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~~~-~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEIDLE-EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccchhh-hccCCceEEEEeeCCCC
Confidence 7889999999999988887765 54543 3478999999999997655443 33345678888877654
No 144
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.8e-20 Score=123.99 Aligned_cols=141 Identities=28% Similarity=0.420 Sum_probs=119.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEE-CCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.++++++|+.|.||||++++.+.+.|...+.++.+......+.. +...+++..|||.|++.+-.....++=.+.+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999997766554443 33459999999999999999988888899999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc----c-cCCCCCCCceeccceeecc
Q 031880 85 FSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ----F-SSGHPGATPITTSQVWVTN 147 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~-~~~~~~~~~~~~s~~~~~~ 147 (151)
||++.+.++.++ ..|.+.+.+.+.++|++++|||.|..+... + ......+.+++.|+..+-|
T Consensus 90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~N 156 (216)
T KOG0096|consen 90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYN 156 (216)
T ss_pred eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccc
Confidence 999999999999 999999999999999999999999865431 1 1245667788888866544
No 145
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=4.7e-20 Score=140.74 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=95.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc--------cccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 74 (151)
..++|+++|++|||||||+++|++.. +...+.+++.+.+...+.+++ +.+.+|||||..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45799999999999999999999864 345566666666666777766 45789999998655432 1346
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-cCCCCCCCceecccee
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-SSGHPGATPITTSQVW 144 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~s~~~ 144 (151)
++.+|++++|||.+++.++... |+..+.. .+.|+++|+||+|+.+.... .....+..++++|++.
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec
Confidence 7899999999999988776653 5555543 37899999999999654110 0122234567777765
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=3.9e-21 Score=126.09 Aligned_cols=120 Identities=23% Similarity=0.171 Sum_probs=81.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChh-----cccccccccccCCcEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFL 82 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~~i 82 (151)
||+++|+++||||||+++|.+..+. +.++... .... .+|||||.. .++.... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987642 2232211 1111 589999972 2333332 478999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCCCC-CCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGHPG-ATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~~~-~~~~~~s~~~~~~~ 148 (151)
+|||++++.++... .|...+ ..|+++|+||+|+.+..... .+..+ ..++++|+..+.+.
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 99999999987653 454432 24999999999986421111 11222 35788888877653
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=5.2e-20 Score=136.59 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=91.5
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCccceeeeeeEEEEECCeEEEEEEEeCCChhcc-ccccc------
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRLRP------ 72 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-~~~~~------ 72 (151)
+..+.++|+++|.++||||||+++|++..+.. ....++.......+..++ .++.+|||||..+. .....
T Consensus 48 ~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 48 SNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 44567899999999999999999999877631 222222333334444544 56889999998532 22111
Q ss_pred -ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--cc----CCCCCCCceeccceee
Q 031880 73 -LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FS----SGHPGATPITTSQVWV 145 (151)
Q Consensus 73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~----~~~~~~~~~~~s~~~~ 145 (151)
..++++|++++|+|..+ ++......|+..+.+. +.|.++|+||+|+.+... .. .......++++|+..+
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg 201 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSG 201 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 23679999999999754 4555534566666543 567889999999864321 00 1112245788888776
Q ss_pred ccC
Q 031880 146 TND 148 (151)
Q Consensus 146 ~~~ 148 (151)
.+.
T Consensus 202 ~gv 204 (339)
T PRK15494 202 KNI 204 (339)
T ss_pred cCH
Confidence 553
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=7.9e-20 Score=122.69 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=91.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC-CeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.|+++|.+++|||||+++|....+...+.+...... ...+..+ .....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998877654333332222 2233332 24578899999999988887777889999999999
Q ss_pred eCCCh---hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--c----c--------CCCCCCCceeccceeecc
Q 031880 86 SLISK---ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--F----S--------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~----~--------~~~~~~~~~~~s~~~~~~ 147 (151)
|.++. +++..+ ..+.+ .+.|+++|+||+|+..... + . .......++++|+..+.+
T Consensus 82 d~~~~~~~~~~~~~-----~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 82 AADDGVMPQTIEAI-----KLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred ECCCCccHHHHHHH-----HHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 99874 333322 22332 3789999999999864311 0 0 011235678888877654
No 149
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.9e-20 Score=122.59 Aligned_cols=120 Identities=21% Similarity=0.317 Sum_probs=99.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..++.+|+++|--++||||++.+|..+.+... .||.+...+ .+.+. .+.+++||..|+++++..|..++++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 45789999999999999999999998877654 777765543 23333 588999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDK 126 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~ 126 (151)
+|.|.+|++.+..+.+.+...+.... .+.|+++.+||.|++..-
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 99999999999998666666655543 689999999999988543
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.1e-19 Score=140.20 Aligned_cols=137 Identities=19% Similarity=0.182 Sum_probs=91.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc--------ccccccccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY 75 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 75 (151)
..+|+++|.++||||||+++|++... ......+..+.....+..++ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 46899999999999999999998654 22222223333344455555 3578999999763 222334467
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC---CCCCCCceeccceeeccC
Q 031880 76 RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS---GHPGATPITTSQVWVTND 148 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~~~s~~~~~~~ 148 (151)
+.+|++++|||+++..++.. ..|...+.+ .+.|+++|+||+|+........ ......++++|+..+.+.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGV 187 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCc
Confidence 89999999999998766543 345555554 3789999999999864321111 111123578888776654
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.1e-19 Score=138.74 Aligned_cols=138 Identities=21% Similarity=0.225 Sum_probs=96.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc----------ccccc-
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~- 71 (151)
..++|+++|.++||||||+++|++... ...+.+++.+.....+..++.. +.+|||||..+ +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998764 3344455555555566666654 56999999532 22221
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc-------cc---CCCCCCCceecc
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ-------FS---SGHPGATPITTS 141 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-------~~---~~~~~~~~~~~s 141 (151)
..+++++|++++|||++++.++..+ . +...+.. .+.|+++|+||+|+.+... +. .......++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~-~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ-R-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 2346899999999999998888876 3 4444443 3789999999999964211 11 122335678889
Q ss_pred ceeeccC
Q 031880 142 QVWVTND 148 (151)
Q Consensus 142 ~~~~~~~ 148 (151)
+..+.+.
T Consensus 364 Ak~g~gv 370 (472)
T PRK03003 364 AKTGRAV 370 (472)
T ss_pred CCCCCCH
Confidence 8887654
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=2.3e-19 Score=121.19 Aligned_cols=135 Identities=22% Similarity=0.234 Sum_probs=90.4
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc----ccccc---cccccCCcEEE
Q 031880 11 TVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLR---PLSYRGADVFL 82 (151)
Q Consensus 11 viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~---~~~~~~~~~~i 82 (151)
++|++|||||||+++|.+... ...+..++.......+..++ ...+.+|||||..+ .+... ...++.+++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764 23333333332233344441 35688999999632 12221 22467899999
Q ss_pred EEEeCCCh------hHHHHHHHHHHHHHhhhC--------CCCCEEEEeeCCccccccccc-------CCCCCCCceecc
Q 031880 83 LAFSLISK------ASYENVYKKWIPELRHYA--------PNVPIVLVGTKLDLREDKQFS-------SGHPGATPITTS 141 (151)
Q Consensus 83 ~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~~iivv~nK~Dl~~~~~~~-------~~~~~~~~~~~s 141 (151)
+|+|..+. .++... ..|...+.... .+.|+++|+||+|+...+... .......++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999887 577777 66777665433 378999999999997544432 223445578888
Q ss_pred ceeecc
Q 031880 142 QVWVTN 147 (151)
Q Consensus 142 ~~~~~~ 147 (151)
+..+.+
T Consensus 159 a~~~~g 164 (176)
T cd01881 159 AKTEEG 164 (176)
T ss_pred hhhhcC
Confidence 776654
No 153
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.81 E-value=9.8e-21 Score=121.50 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=110.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.++.+.++|...+|||||++....+.+.....|+.+....+ +....+.+.+||.+|+.+|+.+|..++++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 36789999999999999999999888887777777665432 334456788999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccccccc----------CCCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFS----------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~----------~~~~~~~~~~~s~~~~~~~ 148 (151)
.|..++..+......+.+.+.+.. .++|++|+|||.|++..-... -.....-++++|+++..|.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999888877666677776654 689999999999987532111 1233344677777776654
No 154
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=1.4e-19 Score=133.77 Aligned_cols=139 Identities=20% Similarity=0.184 Sum_probs=97.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc----ccccc---ccccCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRP---LSYRGA 78 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~---~~~~~~ 78 (151)
..|+++|.++||||||++++...+. +..|..|+.......+.+. ....+.+||+||..+. +.+.. ..++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4689999999999999999997542 3445445443333344442 2245889999997432 11222 235679
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 79 DVFLLAFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++++|+|+++.++++.+ ..|..++..+. .+.|+++|+||+|+.+...+.. ...+..++++|+..+.+
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 999999999988889888 89999998765 3689999999999965443221 12335678888877654
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=2.9e-19 Score=118.75 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=87.1
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCC-CccceeeeeeEEEEECCeEEEEEEEeCCChhccccc------ccccc--cCCcEE
Q 031880 11 TVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 81 (151)
Q Consensus 11 viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~ 81 (151)
++|.+|||||||++++.+..+... +..+........+..++ ..+.+|||||...+... ...++ +.++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764333 33333333344555555 46889999998776542 33344 489999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~ 147 (151)
++|+|..+..+.. .|...+.+ .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 144 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEG 144 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCC
Confidence 9999998754432 33334433 2789999999999976543322 22345678888877654
No 156
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=2.7e-19 Score=121.84 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=89.5
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEE-EEECCeEEEEEEEeCCChh----------ccccc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSAN-VVVDGSTVNLGLWDTAGQE----------DYNRL 70 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g~~----------~~~~~ 70 (151)
.+.+..+|+++|.+|+|||||++++++..+...+.++...+.... ...++ .+.+|||||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 456789999999999999999999998765444334433322221 22222 58899999943 22222
Q ss_pred cccccc---CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-----------CCCCCCC
Q 031880 71 RPLSYR---GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-----------SGHPGAT 136 (151)
Q Consensus 71 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-----------~~~~~~~ 136 (151)
...+++ .++++++|+|.+++.+.... .+...+.. .+.|+++++||+|+.+..... .......
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 223333 46899999999876554443 23344433 278999999999986432111 1112346
Q ss_pred ceeccceeeccC
Q 031880 137 PITTSQVWVTND 148 (151)
Q Consensus 137 ~~~~s~~~~~~~ 148 (151)
++++|+..+.+.
T Consensus 167 v~~~Sa~~g~gi 178 (179)
T TIGR03598 167 VQLFSSLKKTGI 178 (179)
T ss_pred eEEEECCCCCCC
Confidence 789999888764
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.7e-19 Score=119.51 Aligned_cols=132 Identities=22% Similarity=0.203 Sum_probs=87.4
Q ss_pred EEECCCCCCHHHHHHHHhcCC--CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc--------cccccccCCc
Q 031880 10 VTVGDGAVGKTCMLISYTSNT--FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (151)
Q Consensus 10 ~viG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~ 79 (151)
+++|.+|+|||||+++|++.. +...+.++...........++ +.+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764 333444444444444444444 6788999999877543 2234578899
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC---CCCCCCceeccceeecc
Q 031880 80 VFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS---GHPGATPITTSQVWVTN 147 (151)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~~~s~~~~~~ 147 (151)
++++|+|..+..+.... .+...+.+. +.|+++|+||+|+.+...... ......++++|+..+.+
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCC
Confidence 99999998765544432 233344433 689999999999876544311 11112457777776644
No 158
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=7.8e-20 Score=139.35 Aligned_cols=124 Identities=24% Similarity=0.416 Sum_probs=101.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.++|+++|+.||||||||-.++...|+++ .|...+.+........+.+...+.|++...+-+......++.||++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4689999999999999999999999998765 344334444334445556678899998666655565678899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQF 128 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~ 128 (151)
+|+++++++++.+..+|+..+++.. .++|+|+||||+|+.....-
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 9999999999999999999999988 68999999999998765443
No 159
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=3.4e-19 Score=128.67 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=88.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc--------cccccccC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRG 77 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 77 (151)
+|+++|.+|||||||+|+|++..+. .....|+..... .+...+ ..++.+|||||...... .....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999987653 233334433322 232222 25688999999754321 12235689
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|++++|+|.++..+.. ..+...+.+ .+.|+++|+||+|+.+...... ......++++|+..+.+.
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 99999999998776553 234444444 3789999999999864332211 112225788888877653
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.5e-18 Score=116.50 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=89.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc-----------cc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 72 (151)
.++|+++|.+|+|||||++++++.... .....+........+..++. .+.+|||||..+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999986532 22222332333334445553 4679999996543211 11
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc--cc-------cCC---CCCCCceec
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK--QF-------SSG---HPGATPITT 140 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~-------~~~---~~~~~~~~~ 140 (151)
..+..+|++++|+|..++.+.... . +...+.. .+.|+++++||+|+.+.+ .. ... .....++.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-R-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-H-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 235789999999999888776554 2 3333332 268999999999987552 11 111 124567888
Q ss_pred cceeeccC
Q 031880 141 SQVWVTND 148 (151)
Q Consensus 141 s~~~~~~~ 148 (151)
|+..+.+.
T Consensus 156 Sa~~~~~i 163 (174)
T cd01895 156 SALTGQGV 163 (174)
T ss_pred eccCCCCH
Confidence 88777553
No 161
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=2.3e-18 Score=131.65 Aligned_cols=138 Identities=21% Similarity=0.187 Sum_probs=95.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc-----------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 71 (151)
..++|+++|.+++|||||+++|++... .....+++.+.....+..++. .+.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999997653 344445555554555555554 67899999976544321
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc-cccc---c-------cCCCCCCCceec
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR-EDKQ---F-------SSGHPGATPITT 140 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~---~-------~~~~~~~~~~~~ 140 (151)
...++.+|++++|+|++++.+.... . +...+.+ .+.|+++|+||+|+. +... + ........++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~-~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL-R-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH-H-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 1246889999999999988777665 3 3444433 278999999999986 2111 1 112234677889
Q ss_pred cceeeccC
Q 031880 141 SQVWVTND 148 (151)
Q Consensus 141 s~~~~~~~ 148 (151)
|+..+.+.
T Consensus 325 SA~~g~~v 332 (429)
T TIGR03594 325 SALTGQGV 332 (429)
T ss_pred eCCCCCCH
Confidence 98887653
No 162
>PRK04213 GTP-binding protein; Provisional
Probab=99.79 E-value=6e-20 Score=127.06 Aligned_cols=136 Identities=18% Similarity=0.095 Sum_probs=81.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCC-----------hhcccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPL 73 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~ 73 (151)
..++|+++|.+|||||||+++|.+..+...+.+..... ...+... .+.+||||| ++.++..+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 56899999999999999999999877654434433211 1222222 488999999 4555554444
Q ss_pred cc----cCCcEEEEEEeCCChhHHH---------HHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--cc--CCCCC--
Q 031880 74 SY----RGADVFLLAFSLISKASYE---------NVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FS--SGHPG-- 134 (151)
Q Consensus 74 ~~----~~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~--~~~~~-- 134 (151)
++ ..++++++|+|.++...+. .....+...+.. .++|+++|+||+|+.+.+. .. ....+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 44 3457888888875422110 000111222222 3789999999999964431 10 11111
Q ss_pred -------CCceeccceeeccC
Q 031880 135 -------ATPITTSQVWVTND 148 (151)
Q Consensus 135 -------~~~~~~s~~~~~~~ 148 (151)
..++++|+..+ +.
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi 180 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GI 180 (201)
T ss_pred ccccccCCcEEEEecccC-CH
Confidence 24688888876 53
No 163
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=4.5e-19 Score=135.73 Aligned_cols=135 Identities=22% Similarity=0.183 Sum_probs=89.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc--------cccccccccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR 76 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 76 (151)
.+|+++|.+|||||||+++|.+... ...+.+++.+.....+..++ ..+.+|||||.+. .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998763 34444444444455555666 6789999999876 1222334578
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCC--CCCC-Cceeccceeecc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSG--HPGA-TPITTSQVWVTN 147 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~--~~~~-~~~~~s~~~~~~ 147 (151)
.+|++++|+|..+..+.... .+...+++. +.|+++|+||+|+.+......+ ..++ .++++|+..+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRG 149 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCC
Confidence 99999999999875333221 222333332 7899999999997642222111 1222 367788776654
No 164
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=7.9e-19 Score=129.62 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=95.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccc----cccccc---ccCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPLS---YRGA 78 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~~~~~~---~~~~ 78 (151)
..|+++|.++||||||++++..... +..|..|+.......+.+++ ...+.+||+||..+.. .+...+ ++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999997643 33444444333333344443 3578899999974322 222223 4579
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCccccccccc------CCCCCCCceeccceeec
Q 031880 79 DVFLLAFSLISK---ASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVT 146 (151)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~ 146 (151)
+++++|+|+++. .+++.+ ..|..++..+. .+.|++||+||+|+.+.+... .+..+..++++|+..+.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999876 678887 88888887654 478999999999986543221 11224567888887765
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 316 G 316 (329)
T TIGR02729 316 G 316 (329)
T ss_pred C
Confidence 4
No 165
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.79 E-value=6.6e-19 Score=114.16 Aligned_cols=117 Identities=27% Similarity=0.598 Sum_probs=104.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
-.+||.++|++..|||||+-.+.++.+.+++..+.+... .+.+.+.+..+.+.|||..|++++..+.+...+++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 468999999999999999999999988877777776665 5688899999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
+||++.++++..+ ..|+...+...+..-=++||+|.|+
T Consensus 99 mFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 99 MFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred EEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHh
Confidence 9999999999999 9999999887654444788999985
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.79 E-value=7.3e-19 Score=138.45 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-------CCCCCccce------eeeee-E--EEEE---CCeEEEEEEEeCCChhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYIPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQED 66 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~-------~~~~~~~~~------~~~~~-~--~~~~---~~~~~~~~i~d~~g~~~ 66 (151)
.-+|+++|+.++|||||+++|+... +...+..+. +.++. . .+.+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999999642 222222221 11111 1 1222 45678999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--cc---CCCCCC---Cce
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FS---SGHPGA---TPI 138 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~---~~~~~~---~~~ 138 (151)
|...+..+++.+|++++|+|+++..+.... ..|...+.. ++|+++|+||+|+.+... +. .+..+. .++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~~---~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi 158 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALEN---DLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAI 158 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHHc---CCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEE
Confidence 988888889999999999999987777776 666555543 789999999999864321 11 111122 357
Q ss_pred eccceeeccC
Q 031880 139 TTSQVWVTND 148 (151)
Q Consensus 139 ~~s~~~~~~~ 148 (151)
.+|+.++.+.
T Consensus 159 ~vSAktG~GI 168 (595)
T TIGR01393 159 LASAKTGIGI 168 (595)
T ss_pred EeeccCCCCH
Confidence 8888877654
No 167
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=2.6e-18 Score=114.51 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=86.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc--------ccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYR 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 76 (151)
...+|+++|.+|+|||||++++.+...........................+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999875422111111111111122233346788999999654332 1223467
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc-cc-------CCCCCCCceeccceeecc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ-FS-------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~-------~~~~~~~~~~~s~~~~~~ 147 (151)
.+|++++|+|.++.. ......+...+.+. +.|+++|+||+|+..... .. .......++++|+..+.+
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 899999999998762 22213344444443 689999999999873221 11 122235567777766544
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=1.4e-18 Score=132.78 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=90.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChh--------cccccccccccC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYRG 77 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 77 (151)
+|+++|.+|||||||+++|.+... ...+.+++.+.....+..++ ..+.+|||||.. .+.......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 33444444444455555555 358899999963 333344556789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC---CCCCCCceeccceeecc
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS---GHPGATPITTSQVWVTN 147 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~~~s~~~~~~ 147 (151)
+|++++|+|..+..+... ..+...+++. +.|+++|+||+|+.+.+.... ......++.+|+..+.+
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~~--~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRKS--GKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHHh--CCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCC
Confidence 999999999976543333 2334444443 789999999999875443322 12222567777776654
No 169
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5e-18 Score=108.32 Aligned_cols=121 Identities=21% Similarity=0.308 Sum_probs=96.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.++++|+++|..++||||++.+|.-+.. ....||.+... ..+++ +.++|.+||..|+++.+..|..++.+..++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv-etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeE-EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 4688999999999999999999997653 33456655443 23334 44789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQF 128 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~ 128 (151)
|.|..++...+++...+...+.... .+.|++|.+||.|+++.+..
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p 136 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP 136 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH
Confidence 9999988888887566655554332 57899999999999876544
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.77 E-value=7.7e-18 Score=132.29 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=93.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+..+|+++|+.++|||||+++|.+..+...+.+...... ...+..++. ..+.+|||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 567899999999999999999998877654433332222 223444332 278899999999999888888899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc--cccC---------C--CCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK--QFSS---------G--HPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~---------~--~~~~~~~~~s~~~~~~~ 148 (151)
|+|.++...-... ..+ ..... .++|+++++||+|+.+.. .+.. + .....++++|+..+.+.
T Consensus 165 VVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9998864322222 222 12222 378999999999986421 1111 0 11245788888887654
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=2.3e-18 Score=118.47 Aligned_cols=138 Identities=16% Similarity=0.095 Sum_probs=84.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC----CCCCCC----c-cceeeee-eEEEE----------ECCeEEEEEEEeCCChhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY----I-PTVFDNF-SANVV----------VDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~----~~~~~~----~-~~~~~~~-~~~~~----------~~~~~~~~~i~d~~g~~~ 66 (151)
+||+++|++++|||||+++|+.. .+...+ . .|....+ ...+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999962 111111 1 1111111 11211 123467899999999876
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-------cC---------
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-------SS--------- 130 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-------~~--------- 130 (151)
+........+.+|++++|+|..+....... ..+.. ... .+.|+++|+||+|+...... ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~~-~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLVI-GEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHHH-HHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 533333345678999999999875443333 22221 111 26799999999998532111 00
Q ss_pred CCCCCCceeccceeeccC
Q 031880 131 GHPGATPITTSQVWVTND 148 (151)
Q Consensus 131 ~~~~~~~~~~s~~~~~~~ 148 (151)
...+..++++|+.++.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi 174 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGE 174 (192)
T ss_pred CcCCCCEEEEeccCCCCH
Confidence 123456788988887654
No 172
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=110.73 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=98.7
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCC--------CCcc---ce-eeeeeEEEEECCeEEEEEEEeCCChhcccc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPT--------DYIP---TV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~--------~~~~---~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (151)
.++...||+++|+.++||||+++++....... .+.. ++ ...+. .+.++ ....+++++||||++|+.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g-~~~~~-~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG-SIELD-EDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc-ceEEc-CcceEEEecCCCcHHHHH
Confidence 46778999999999999999999999875311 1111 11 12221 22222 236788999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCC-CCCCceeccc
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGH-PGATPITTSQ 142 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~-~~~~~~~~s~ 142 (151)
+|..+++++.++|++.|.+++..+ .. ...++.+....+ +|++|..||.||.+.+..+ ... .....|+.++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence 999999999999999999999888 43 455666555422 9999999999998753331 222 3455566655
Q ss_pred eee
Q 031880 143 VWV 145 (151)
Q Consensus 143 ~~~ 145 (151)
.++
T Consensus 161 ~e~ 163 (187)
T COG2229 161 TEG 163 (187)
T ss_pred ccc
Confidence 543
No 173
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.75 E-value=6.7e-18 Score=134.75 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCcccee---eeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+..+|+++|+.++|||||+++|....+.....+... ..+......++....+.+|||||++.|..++...+..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 556999999999999999999998766543322221 12233333445568899999999999999888889999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc--cccC---------C--CCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK--QFSS---------G--HPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~---------~--~~~~~~~~~s~~~~~~~ 148 (151)
++|+|+++...-... ..|. .+.. .++|+++++||+|+.... .+.. + .....++++|+..+.+.
T Consensus 323 ILVVDA~dGv~~QT~-E~I~-~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 323 ILIIAADDGVKPQTI-EAIN-YIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred EEEEECcCCCChhhH-HHHH-HHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 999998874322222 2222 2222 378999999999986532 1110 1 11245788888777553
No 174
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=4.2e-18 Score=119.03 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-----------Ccccee------eee---eEEEEE---CCeEEEEEEEeCCCh
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-----------YIPTVF------DNF---SANVVV---DGSTVNLGLWDTAGQ 64 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~-----------~~~~~~------~~~---~~~~~~---~~~~~~~~i~d~~g~ 64 (151)
+|+++|+.++|||||+++|+....... +..+.. ..+ ...+.. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997543221 011100 111 011111 355689999999999
Q ss_pred hcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
.+|.......+..+|++++|+|..+..++.. ..|+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9987777778899999999999987766543 334444433 268999999999974
No 175
>PRK11058 GTPase HflX; Provisional
Probab=99.75 E-value=9.7e-18 Score=127.54 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=90.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc--cccc------cccccC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR------PLSYRG 77 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~------~~~~~~ 77 (151)
.+|+++|.++||||||+|+|.+.... .+...++.+.....+...+. ..+.+|||+|..+. ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986543 22223333333444544442 25679999997331 1111 123578
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccccc--ccCCCCCCC-ceeccceeecc
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQ--FSSGHPGAT-PITTSQVWVTN 147 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~--~~~~~~~~~-~~~~s~~~~~~ 147 (151)
+|++++|+|++++.++..+ ..|...+.... .+.|+++|+||+|+.+... ......+.. .+.+|+.++.+
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCC
Confidence 9999999999999888877 55555555443 4789999999999864311 111112222 36778777654
No 176
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.75 E-value=1.2e-17 Score=113.93 Aligned_cols=113 Identities=17% Similarity=0.098 Sum_probs=80.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcccee--------------eeee-EEEEECCeEEEEEEEeCCChhccccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVF--------------DNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (151)
+|+++|.+|+|||||+++|++............ .... ...........+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998765543322110 0000 1111222246788999999988887777
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.+++.+|++++|+|..+..+.... .++..+.+ .+.|+++|+||+|+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcc
Confidence 888999999999999876554433 34444443 4889999999999865
No 177
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=1.4e-17 Score=126.27 Aligned_cols=138 Identities=20% Similarity=0.160 Sum_probs=92.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc----ccccccc---ccCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~~---~~~~~ 79 (151)
.|+++|.++||||||++++++.+. +..|..|+.......+.+.+ ...+.+||+||..+. ..+...+ +++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999997653 23444443332222333331 356889999997432 1222233 45699
Q ss_pred EEEEEEeCCCh---hHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCccccccccc---CCCCCCCceeccceeecc
Q 031880 80 VFLLAFSLISK---ASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFS---SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~---~~~~~~~~~~~s~~~~~~ 147 (151)
++++|+|+++. .++... ..|..++..+. .+.|++||+||+|+.+..... ....+..++.+|+..+.+
T Consensus 239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999754 677777 78888887764 378999999999985432211 111224567888877654
No 178
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=7.2e-18 Score=111.70 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=85.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc------ccc--ccC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLS--YRG 77 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~--~~~ 77 (151)
++|+++|.|+||||||+|+|.+.+.. .++..++.+.....+...+ ..+.++|+||........ ..+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999987643 3444555554455666666 567799999964433221 122 268
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCCCCCCceeccceeecc
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~ 147 (151)
.|+++.|.|.++.+.-.. +...+.+. ++|++++.||+|+...+... ++.-++..+.+++..+.+
T Consensus 79 ~D~ii~VvDa~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g 148 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEG 148 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBT
T ss_pred CCEEEEECCCCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcC
Confidence 999999999987543322 33333333 89999999999986554432 234456677777765543
No 179
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=1.6e-17 Score=121.25 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=86.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc--------ccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRP 72 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~ 72 (151)
+++.-.|+++|.+|||||||+++|++.... .....+........... ...++.+|||||...... ...
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 346678999999999999999999987653 22222222222222222 236888999999654321 122
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc-cccc-------CCCCCCCceecccee
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED-KQFS-------SGHPGATPITTSQVW 144 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-~~~~-------~~~~~~~~~~~s~~~ 144 (151)
..+..+|++++|+|+++..+ .....+...+.. .+.|+++|+||+|+... .... ........+.+|+..
T Consensus 80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 34678999999999987322 221333444432 26899999999999733 2211 112345567888776
Q ss_pred ecc
Q 031880 145 VTN 147 (151)
Q Consensus 145 ~~~ 147 (151)
+.+
T Consensus 156 ~~g 158 (292)
T PRK00089 156 GDN 158 (292)
T ss_pred CCC
Confidence 644
No 180
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=1.1e-17 Score=118.57 Aligned_cols=113 Identities=20% Similarity=0.133 Sum_probs=79.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCccce----------eeee-eEEEEECCeEEEEEEEeCCChhccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPT------DYIPTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~------~~~~~~----------~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (151)
+|+++|+.++|||||+++|+...-.. ....+. ...+ .....+....+++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998531100 000000 0111 122333445578999999999998887
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 71 RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
....++.+|++++|+|.++...... ..+...+.+. ++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence 7888999999999999987654433 4455555543 789999999999874
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.74 E-value=3.5e-17 Score=131.60 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=94.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+...|+++|+.++|||||+++|....+.....+...... ...+.+++ ..+.+|||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3567899999999999999999998766544332221111 23344444 67889999999999988888889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc--cccC---------C--CCCCCceeccceeeccCC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK--QFSS---------G--HPGATPITTSQVWVTNDN 149 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~---------~--~~~~~~~~~s~~~~~~~~ 149 (151)
+|||+++...-... ..|. .... .++|++|++||+|+.+.. .+.. + .....++++|+..+.+.+
T Consensus 366 LVVdAddGv~~qT~-e~i~-~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAIN-HAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEECCCCCCHhHH-HHHH-HHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99999874222222 2222 1221 378999999999996421 1111 1 112567888888876643
No 182
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=2.5e-17 Score=113.32 Aligned_cols=139 Identities=17% Similarity=0.088 Sum_probs=84.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChh----------ccccccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP 72 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~ 72 (151)
.....+|+++|++|+|||||+++|++..+...+.++...+....... ....+.+|||||.. ++.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 34568999999999999999999998765555455443332222111 12578899999942 3323333
Q ss_pred cccc---CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-------C--CCCCCCceec
Q 031880 73 LSYR---GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-------S--GHPGATPITT 140 (151)
Q Consensus 73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-------~--~~~~~~~~~~ 140 (151)
.+++ .++++++++|.+++.+.... .+...+.. .+.|+++++||+|+.+..+.. . ......++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3343 34678888997765443321 22233332 278999999999986432211 0 1114566777
Q ss_pred cceeecc
Q 031880 141 SQVWVTN 147 (151)
Q Consensus 141 s~~~~~~ 147 (151)
|+..+.+
T Consensus 175 Sa~~~~g 181 (196)
T PRK00454 175 SSLKKQG 181 (196)
T ss_pred EcCCCCC
Confidence 7766543
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=2.8e-17 Score=132.31 Aligned_cols=114 Identities=26% Similarity=0.312 Sum_probs=83.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc----------ccccc-
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~- 71 (151)
...||+++|.++||||||+++|++... ..++.+++.+.+...+.+++.. +.+|||||..+ +....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998763 4555666666555566666654 55999999642 11111
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
...++.+|++++|+|.++..++... . +...+.+ .+.|+++|+||+|+.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCC
Confidence 1236789999999999988888776 4 3344433 3789999999999864
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.73 E-value=1.7e-17 Score=130.87 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=94.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC--CCC-----CCccce------eeee-eE--EEEE---CCeEEEEEEEeCCC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNT--FPT-----DYIPTV------FDNF-SA--NVVV---DGSTVNLGLWDTAG 63 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~--~~~-----~~~~~~------~~~~-~~--~~~~---~~~~~~~~i~d~~g 63 (151)
..+.-+|+++|+.++|||||+.+|+... +.. .+..+. +.++ .. .+.+ ++..+.+.+|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 3455699999999999999999998631 111 111110 1111 11 1111 45678999999999
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--cc---CCCCCC---
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FS---SGHPGA--- 135 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~---~~~~~~--- 135 (151)
+.+|...+...+..+|++++|+|+++....... ..|..... .+.|+++|+||+|+.+.+. +. .+..+.
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDAS 159 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcc
Confidence 999988888889999999999999887666555 55555443 2789999999999864321 11 111122
Q ss_pred CceeccceeeccC
Q 031880 136 TPITTSQVWVTND 148 (151)
Q Consensus 136 ~~~~~s~~~~~~~ 148 (151)
.++.+|+..+.+.
T Consensus 160 ~vi~iSAktG~GI 172 (600)
T PRK05433 160 DAVLVSAKTGIGI 172 (600)
T ss_pred eEEEEecCCCCCH
Confidence 2577777776543
No 185
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=5.5e-17 Score=114.83 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=58.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc-------cccccccCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~~ 79 (151)
+|+++|.+++|||||+++|.+... ...+..++.......+.+++ ..+++||+||..+... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999997653 23333444333344444555 5788999999754321 1224578999
Q ss_pred EEEEEEeCCChh
Q 031880 80 VFLLAFSLISKA 91 (151)
Q Consensus 80 ~~i~v~d~~~~~ 91 (151)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999988755
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=2.5e-17 Score=132.55 Aligned_cols=138 Identities=18% Similarity=0.128 Sum_probs=88.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc--------ccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~~ 74 (151)
...+|+++|.++||||||+++|++... ......++.+........++ ..+.+|||||.+.. ......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 346899999999999999999997653 22333333333333344444 46889999997632 2223345
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC---CCCCCCceeccceeeccC
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS---GHPGATPITTSQVWVTND 148 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~~~s~~~~~~~ 148 (151)
++.+|++++|+|.++.. ......|...+++ .+.|+++|+||+|+.+...... ....-.++.+|+..+.+.
T Consensus 352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGV 424 (712)
T ss_pred HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCc
Confidence 78999999999997542 2222355666654 3889999999999864322211 111123567777776654
No 187
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=4.9e-17 Score=124.21 Aligned_cols=148 Identities=12% Similarity=0.019 Sum_probs=90.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCC--CCCC------------Cc---------c------ceeeee-eEEEEEC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------YI---------P------TVFDNF-SANVVVD 50 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~--~~~~------------~~---------~------~~~~~~-~~~~~~~ 50 (151)
|++...++|+++|++++|||||+++|+... .... -. . ..+.+. .....+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 788899999999999999999999998421 1100 00 0 001111 1122234
Q ss_pred CeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc---
Q 031880 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--- 127 (151)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--- 127 (151)
...+.+.+|||||+++|.......+..+|++++|+|+++..++......+...+.. ....|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccccHHHH
Confidence 45578999999999888654445578899999999998631221111122222222 22246999999999964211
Q ss_pred ------cc---CCC----CCCCceeccceeeccCC
Q 031880 128 ------FS---SGH----PGATPITTSQVWVTNDN 149 (151)
Q Consensus 128 ------~~---~~~----~~~~~~~~s~~~~~~~~ 149 (151)
+. ... ....++.+|+..+.|.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~ 194 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVV 194 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcc
Confidence 00 011 12457888888776643
No 188
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=2.7e-17 Score=126.32 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=90.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc----ccc---ccccccCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRL---RPLSYRGA 78 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~---~~~~~~~~ 78 (151)
..|+++|.++||||||+++|...+. +..|..|+.......+...+ ..+.+||+||..+. +.+ ....++.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999997543 23444454433344454555 57889999996321 111 11235789
Q ss_pred cEEEEEEeCCCh----hHHHHHHHHHHHHHhhhC------------CCCCEEEEeeCCcccccccccC------CCCCCC
Q 031880 79 DVFLLAFSLISK----ASYENVYKKWIPELRHYA------------PNVPIVLVGTKLDLREDKQFSS------GHPGAT 136 (151)
Q Consensus 79 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~Dl~~~~~~~~------~~~~~~ 136 (151)
+++++|+|+++. ..+..+ ..|..++..+. .+.|++||+||+|+.+.+.... ...+..
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence 999999999752 345554 45555554432 3689999999999976543221 122456
Q ss_pred ceeccceeecc
Q 031880 137 PITTSQVWVTN 147 (151)
Q Consensus 137 ~~~~s~~~~~~ 147 (151)
++++|+..+.+
T Consensus 317 Vf~ISA~tgeG 327 (500)
T PRK12296 317 VFEVSAASREG 327 (500)
T ss_pred EEEEECCCCCC
Confidence 78888876654
No 189
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=3.5e-17 Score=117.86 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=78.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCC---------Cccce----------eee-eeEEEEECCeEEEEEEEeCCChh
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTD---------YIPTV----------FDN-FSANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~---------~~~~~----------~~~-~~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
-+|+++|++++|||||+++|+...- ... ...+. ... ......+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999984211 000 00000 001 12233445566889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+|.......++.+|++++|+|.++...... ..+...... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 887766677899999999999986543222 233343333 37899999999998643
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=6.8e-17 Score=127.22 Aligned_cols=133 Identities=21% Similarity=0.191 Sum_probs=91.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC---CCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+.|+++|+.++|||||+++|.+. .+..++........ ...+..++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 33333322222222 22344444 78899999999999877777789999999
Q ss_pred EEEeCCC---hhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCccccccccc----------CC--C-CCCCceeccceee
Q 031880 83 LAFSLIS---KASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQFS----------SG--H-PGATPITTSQVWV 145 (151)
Q Consensus 83 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~----------~~--~-~~~~~~~~s~~~~ 145 (151)
+|+|+++ ++++..+ . + +.. .++| +++|+||+|+.+...+. .. . .+..++++|+.++
T Consensus 79 LVVDa~~G~~~qT~ehl-~-i---l~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-A-V---LDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH-H-H---HHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 4555544 2 2 222 2677 99999999996544221 01 1 1467788888887
Q ss_pred ccC
Q 031880 146 TND 148 (151)
Q Consensus 146 ~~~ 148 (151)
.+.
T Consensus 152 ~GI 154 (581)
T TIGR00475 152 QGI 154 (581)
T ss_pred CCc
Confidence 654
No 191
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=2.8e-17 Score=109.93 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=77.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc----cccccccCCcEEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRPLSYRGADVFLL 83 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~~~~~~~~~~~i~ 83 (151)
+|+++|.+++|||||++++.+.. ... ..+ ..+.+... .+|||||...... .....+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987543 111 111 12222222 2799999732211 11123689999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc--C--CCCC--CCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS--S--GHPG--ATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~--~--~~~~--~~~~~~s~~~~~~ 147 (151)
|+|.++..++. ..|+..+ ..+.|+++++||+|+.+.+... . ...+ ..++++|+..+.+
T Consensus 71 v~d~~~~~s~~---~~~~~~~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 71 VHGANDPESRL---PAGLLDI---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEeCCCccccc---CHHHHhc---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 99999887663 3344443 2367999999999986532211 1 1222 3678888887765
No 192
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=8.5e-17 Score=112.86 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCccc------e------eeee---eEEEEEC--------CeEEEEEEEeCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYIPT------V------FDNF---SANVVVD--------GSTVNLGLWDTA 62 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~--~~~~~~~------~------~~~~---~~~~~~~--------~~~~~~~i~d~~ 62 (151)
+|+++|+.++|||||+.+|+...- ......+ . +.+. ....... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999985321 1000000 0 0000 0111222 347889999999
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
|+.+|.......++.+|++++|+|+.+..+.... ..|..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence 9999988888889999999999999887665553 33333332 268999999999975
No 193
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.72 E-value=3.7e-20 Score=123.18 Aligned_cols=143 Identities=28% Similarity=0.416 Sum_probs=115.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEE-EC-CeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.-+|++|+|+.++|||+++.+++...|...|..+++..+...+. .+ ...+++++||..|+++|-.+..-+++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 35789999999999999999999999999999999777644333 33 34578999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCccccccccc---------CCCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLREDKQFS---------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~~~~~---------~~~~~~~~~~~s~~~~~~~ 148 (151)
+|||+++..+|+.. ..|...+.... ...|+++.+||||.++..... .+..-..-+++|++++.|.
T Consensus 104 iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999 99999887653 246789999999987533222 2333344678888877664
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1.2e-16 Score=122.44 Aligned_cols=137 Identities=21% Similarity=0.194 Sum_probs=91.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc-----------c
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~ 71 (151)
..++|+++|.+++|||||+++|++... .....+++.+.....+..++ ..+.+|||||..+.... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 468999999999999999999997542 33344444444444444555 45679999996432211 1
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc----------cCCCCCCCceecc
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF----------SSGHPGATPITTS 141 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----------~~~~~~~~~~~~s 141 (151)
...++.+|++++|+|++++.+.... .+...+.+ .+.|+++|+||+|+.+.+.. ........++.+|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 1256789999999999988776664 33344433 27899999999998633211 1122345678888
Q ss_pred ceeecc
Q 031880 142 QVWVTN 147 (151)
Q Consensus 142 ~~~~~~ 147 (151)
+..+.+
T Consensus 326 A~~~~g 331 (435)
T PRK00093 326 ALTGQG 331 (435)
T ss_pred CCCCCC
Confidence 877654
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=5.8e-17 Score=127.28 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=84.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce----eeeeeEEE-------------EECCeEEEEEEEeCCChhcc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV----FDNFSANV-------------VVDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~~~i~d~~g~~~~ 67 (151)
+.--|+++|++++|||||+++|.+..+........ +..+.... .++.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34469999999999999999999877643322211 11111000 00011123889999999999
Q ss_pred cccccccccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCCCCCCCceeccce
Q 031880 68 NRLRPLSYRGADVFLLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSGHPGATPITTSQV 143 (151)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~s~~ 143 (151)
..++...++.+|++++|||+++ ++++..+ .. +.. .+.|+++++||+|+..... ...++.++++++.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~----l~~--~~vpiIVv~NK~Dl~~~~~---~~~~~~f~e~sak 151 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NI----LRM--YKTPFVVAANKIDRIPGWR---SHEGRPFMESFSK 151 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HH----HHH--cCCCEEEEEECCCccchhh---hccCchHHHHHHh
Confidence 9888888899999999999987 4555554 22 222 2789999999999864221 1234444555443
No 196
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=101.70 Aligned_cols=117 Identities=26% Similarity=0.404 Sum_probs=94.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+++||+++|-.++|||||+.+|.... +....||.+.. .+.+.+++ .+++.+||..|+...+..|.-+|.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn-~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFN-TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcc-eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 578999999999999999999998654 23334444433 33444443 4789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~ 123 (151)
|+|.+|+..|+++.+.+.+.++... ..+|+++.+||.|+-
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 9999999999998677766666543 579999999999974
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=6.8e-17 Score=120.99 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=93.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccc---------ccccccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY 75 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~ 75 (151)
..|+++|.|+||||||.|||++.+. ..++..++.+.........+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999998654 5677777888877777777754 8899999976433 1223347
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----CCCCCCceeccceeec
Q 031880 76 RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----GHPGATPITTSQVWVT 146 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----~~~~~~~~~~s~~~~~ 146 (151)
..||+++||+|....-+-.. +...+.+++ .+.|+++|+||+|-.+.+.... ......+|+++++.++
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCH
Confidence 88999999999865433222 334444443 3689999999999875444322 2333445555555554
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.70 E-value=2.4e-16 Score=124.15 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=84.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCc------------cceeeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYI------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
++.-||+++|+.++|||||+++|+. +.+..... .+.+.++ .....+....+++.+|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3567999999999999999999996 33322211 0111222 2333445566899999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
..+..+++.+|++++|+|+.+....... ..|.. +.. .++|.+++.||+|+...
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~-a~~--~gip~IVviNKiD~~~a 135 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKK-AFA--YGLKPIVVINKVDRPGA 135 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHH-HHHHH-HHH--cCCCEEEEEECcCCCCC
Confidence 8888899999999999999875433332 33333 322 27899999999998643
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.70 E-value=1.6e-16 Score=121.49 Aligned_cols=146 Identities=12% Similarity=0.026 Sum_probs=89.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc--CCCCCCC---------------------ccc------eeeee-eEEEEECCe
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY---------------------IPT------VFDNF-SANVVVDGS 52 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~--~~~~~~~---------------------~~~------~~~~~-~~~~~~~~~ 52 (151)
+...++|+++|+.++|||||+.+|+. +...... ... .+.+. .....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34678999999999999999999985 2221100 000 00111 111223444
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--c--
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--F-- 128 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~-- 128 (151)
.+.+.+|||||+++|.......+..+|++++|+|+++..++......+...+.+.....|++|++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 578999999999988665555678899999999998875432210111111222233457999999999963211 0
Q ss_pred -c-------C----CCCCCCceeccceeeccC
Q 031880 129 -S-------S----GHPGATPITTSQVWVTND 148 (151)
Q Consensus 129 -~-------~----~~~~~~~~~~s~~~~~~~ 148 (151)
. . ......++++|+..+.|.
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni 195 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNV 195 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccc
Confidence 0 0 112356788898887664
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=2.2e-16 Score=104.05 Aligned_cols=132 Identities=21% Similarity=0.170 Sum_probs=88.4
Q ss_pred EECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccc-------ccccCCcEE
Q 031880 11 TVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (151)
Q Consensus 11 viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-------~~~~~~~~~ 81 (151)
++|++|+|||||++++.+.... ....++............. ...+.+||+||...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976443 1222223333333333332 46788999999876654332 367899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc----------cCCCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF----------SSGHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----------~~~~~~~~~~~~s~~~~~~ 147 (151)
++|+|..+..+.... . +...... .+.|+++|+||+|+...... ........++++|+..+.+
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 999999988777665 3 3444333 38899999999998654222 1234556678888776654
No 201
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=2.1e-16 Score=112.77 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=95.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc-------
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------- 71 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------- 71 (151)
|+.++---|+++|.|+||||||+|++++.+.. .....|+.......++.+ ..++.++||||..+.+...
T Consensus 1 ~~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~ 78 (298)
T COG1159 1 PMKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKA 78 (298)
T ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHH
Confidence 45677888999999999999999999987652 333333444434444334 5788899999965443322
Q ss_pred -cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-c-------CCCCCCCceeccc
Q 031880 72 -PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-S-------SGHPGATPITTSQ 142 (151)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~-------~~~~~~~~~~~s~ 142 (151)
...++++|.+++|.|.+....-.. ...+..+.+ .+.|++++.||+|..++... . ........+.+|+
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 224788999999999976433322 344555554 36799999999998766552 2 1233335677888
Q ss_pred eeeccC
Q 031880 143 VWVTND 148 (151)
Q Consensus 143 ~~~~~~ 148 (151)
..+.|.
T Consensus 155 ~~g~n~ 160 (298)
T COG1159 155 LKGDNV 160 (298)
T ss_pred cccCCH
Confidence 777653
No 202
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=4.3e-16 Score=125.70 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=90.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccc----------c
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------L 73 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~----------~ 73 (151)
+.++|+++|+++||||||+|++.+.+.. .++..++.+..... +......+.+|||||...+..... .
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 4689999999999999999999976543 23333333322323 344456788999999877653211 1
Q ss_pred c--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCCCCCCceeccceee
Q 031880 74 S--YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWV 145 (151)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~ 145 (151)
+ ...+|++++|+|.++.+... +|...+.+. +.|+++++||+|+.+.+.+. ++.-++..+.+|+..+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence 2 24799999999998765432 233444443 79999999999987544332 2334566778887766
Q ss_pred cc
Q 031880 146 TN 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 154 ~G 155 (772)
T PRK09554 154 RG 155 (772)
T ss_pred CC
Confidence 54
No 203
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=117.91 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=98.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccc--------cc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------LS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~--------~~ 74 (151)
.-+|++++|.|+||||||+|.|++.. ...+...|+.+.....+.+++ +++.+.||.|..+...... ..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 35799999999999999999999753 356677888888888999998 6688999999776554322 24
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCC--CCCCCceeccceeec
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSG--HPGATPITTSQVWVT 146 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~--~~~~~~~~~s~~~~~ 146 (151)
++.||.+++++|.+.+.+-... ..+. ....+.|+++|.||.||......... ..+...+.+|+.++.
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGE 362 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCcc
Confidence 7889999999999875222222 1122 23357899999999999876554322 344456777777654
No 204
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=6.7e-16 Score=111.73 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=73.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC----------Ccccee-eeeeEEEEECCeEEEEEEEeCCChhccc-----
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YIPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN----- 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~----- 68 (151)
..++|+++|++|+|||||+++|++..+... ..++.. ..+...+..++..+++.+|||||-.++.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 478999999999999999999998766433 222322 2233455556777899999999943221
Q ss_pred ---------------------cccccccc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 69 ---------------------RLRPLSYR--GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 69 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
..+...+. .+|+++++++.+. ..+.......++.+. ..+|+++|+||+|+-.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS---KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh---ccCCEEEEEECCCcCC
Confidence 11112333 3666777776553 122221122334443 3789999999999843
No 205
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.68 E-value=2.8e-16 Score=123.94 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=86.0
Q ss_pred CCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc------ccc--ccCCcEEEE
Q 031880 13 GDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLS--YRGADVFLL 83 (151)
Q Consensus 13 G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~--~~~~~~~i~ 83 (151)
|++|||||||+|++.+..+. .++..++.+.....+..++ ..+++|||||+.++.... ..+ .+.+|+++.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999987663 3333333333344555555 457899999998775532 222 247899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~~ 148 (151)
|+|.++.+.. ..+...+.+ .+.|+++|+||+|+.+.+.+. .+..++.++++|+.++.+.
T Consensus 79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCH
Confidence 9999874432 122233332 378999999999986544332 2344577889998887653
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.68 E-value=5.5e-16 Score=108.03 Aligned_cols=136 Identities=17% Similarity=0.074 Sum_probs=81.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCC-C------------------------------ccceeeeeeEEEEECCeEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT-FPTD-Y------------------------------IPTVFDNFSANVVVDGSTVN 55 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~-~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (151)
+|+++|++++|||||+++|+... .... . ...+.+..... +.....+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence 58999999999999999998532 1110 0 00001111112 2233457
Q ss_pred EEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc-----cc-
Q 031880 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ-----FS- 129 (151)
Q Consensus 56 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-----~~- 129 (151)
+.+|||||+++|.......++.+|++++|+|+++...-... .....+.. ....++++|+||+|+.+... +.
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~-~~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSL-LGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHH-cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 88999999988765555567899999999999865322221 11222222 12245788999999864211 00
Q ss_pred ------CC--CCCCCceeccceeeccC
Q 031880 130 ------SG--HPGATPITTSQVWVTND 148 (151)
Q Consensus 130 ------~~--~~~~~~~~~s~~~~~~~ 148 (151)
.. .....++.+|+..+.|.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni 182 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNV 182 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCC
Confidence 01 11234678888877664
No 207
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.3e-17 Score=107.46 Aligned_cols=123 Identities=18% Similarity=0.270 Sum_probs=89.6
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC---CCCC---CCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccccc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN---TFPT---DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 74 (151)
|.....+.++++|..++|||||+.+.-.. .+.. ....++.--...++.+. ..++.+||..|++..+++|..+
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 34456788999999999999999776532 2211 11111111112344444 3568899999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCccccc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHY-APNVPIVLVGTKLDLRED 125 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 125 (151)
|..+|++|+++|.++++.|......+...+.+- ..+.|+++.+||.|+++.
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 999999999999999999988844444443332 368999999999999864
No 208
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=7.4e-17 Score=109.11 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEE-CCeEEEEEEEeCCChhccccccccc---ccCCcEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLS---YRGADVF 81 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~---~~~~~~~ 81 (151)
.-.|+++|++|+|||+|..+|..+...+...+. +... .... ....-.+.++|+||+.+.+...... ...+.+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 457999999999999999999998554332222 1111 1111 2233467899999999887644333 7789999
Q ss_pred EEEEeCCC-hhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccc
Q 031880 82 LLAFSLIS-KASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLRE 124 (151)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~ 124 (151)
|+|.|.+. ...+....+++++.+.... ..+|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999873 4455555466666655432 5789999999999764
No 209
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=6.7e-16 Score=116.36 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=92.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc----cc---cccccCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LR---PLSYRGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~---~~~~~~~~ 79 (151)
.|+++|.|+||||||++++...+. +..+..|+.......+...+ ...+.++||||..+-.. +. ...++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999997543 33444455444444444433 23578999999753221 11 12467899
Q ss_pred EEEEEEeCC---ChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccccC------CC-C-CCCceeccceee
Q 031880 80 VFLLAFSLI---SKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFSS------GH-P-GATPITTSQVWV 145 (151)
Q Consensus 80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~~------~~-~-~~~~~~~s~~~~ 145 (151)
++++|+|++ +...+..+ ..|..++..+. .+.|+++|+||+|+.....+.. .. . ....+.+|+..+
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999987 45677777 78888887764 3689999999999865432211 11 1 124577777665
Q ss_pred cc
Q 031880 146 TN 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 319 ~G 320 (390)
T PRK12298 319 LG 320 (390)
T ss_pred cC
Confidence 44
No 210
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=5.6e-16 Score=107.13 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=69.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceee---eeeEEEEECCeEEEEEEEeCCChhcccccc-----cccccC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFD---NFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----PLSYRG 77 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----~~~~~~ 77 (151)
++||+++|.+|+|||||+|.+++.........+... ..............+.+|||||........ ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543221111110 111111111112368899999975432221 223567
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+|.++++.+. +|......|++.+.+. +.|+++|+||+|+-
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccch
Confidence 8888887432 2444435666767665 67999999999983
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.65 E-value=1e-15 Score=120.64 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=90.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCCCCccc------------eeeee-eEEEEECCeEEEEEEEeCCChhccccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYIPT------------VFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~--~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (151)
+|+++|+.++|||||+.+|+. +.+....... .+.++ .....+....+++.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999996 3332211000 01111 22233444568899999999999988888
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--ccC-------------CCCCCCc
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FSS-------------GHPGATP 137 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~-------------~~~~~~~ 137 (151)
..++.+|++++|+|+.+.. .... ..|+..+... ++|+++|+||+|+.+.+. +.. ++..+.+
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT-~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQT-RFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHH-HHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 8899999999999997643 2233 4455555443 789999999999865432 111 1223456
Q ss_pred eeccceeec
Q 031880 138 ITTSQVWVT 146 (151)
Q Consensus 138 ~~~s~~~~~ 146 (151)
+.+|+..+.
T Consensus 159 l~~SA~~g~ 167 (594)
T TIGR01394 159 VYASGRAGW 167 (594)
T ss_pred EechhhcCc
Confidence 777777765
No 212
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.65 E-value=6.6e-16 Score=105.97 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=78.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCc----------c-c-----eeee-eeEEEEEC--CeEEEEEEEeCCChh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYI----------P-T-----VFDN-FSANVVVD--GSTVNLGLWDTAGQE 65 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~----------~-~-----~~~~-~~~~~~~~--~~~~~~~i~d~~g~~ 65 (151)
+..+|+++|+.++|||||+.+|+......... . . ...+ ........ .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46899999999999999999999543211100 0 0 0001 11122222 556789999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+|.......++.+|++|+|+|..+...-... ..+..+... ++|+++|.||+|+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccch
Confidence 8887777778999999999999865443332 233334333 78999999999986
No 213
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=1.4e-15 Score=105.68 Aligned_cols=89 Identities=19% Similarity=0.081 Sum_probs=59.5
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS 129 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 129 (151)
..+.+|||||++++.......+..+|++++|+|++++ .++..+ ..| .. ....|+++|+||+|+.+.....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~----~~-~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AAL----EI-MGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHH----HH-cCCCcEEEEEEchhccCHHHHH
Confidence 6789999999998877666677889999999999863 233332 222 22 1234799999999986532210
Q ss_pred -------C--C---CCCCCceeccceeeccC
Q 031880 130 -------S--G---HPGATPITTSQVWVTND 148 (151)
Q Consensus 130 -------~--~---~~~~~~~~~s~~~~~~~ 148 (151)
. . .....++.+|+..+.+.
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi 187 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNI 187 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCH
Confidence 0 1 12455788888876553
No 214
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=3.4e-15 Score=94.76 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=68.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc---------ccccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR 76 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~ 76 (151)
+|+++|.+|+|||||+++|++... .....+++.......+.+++.. +.++||||...... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999997533 2233333333333445556654 46999999543211 1122347
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTK 119 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 119 (151)
.+|++++|+|.+++.. ... ..+++.++ .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999877322 122 34445553 48899999998
No 215
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.64 E-value=1.4e-15 Score=109.70 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=76.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCc-----cce-----------eeee-eEEEEECCeEEEEEEEeCCChhccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYI-----PTV-----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~-----~~~-----------~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (151)
+|+++|++|+|||||+++++......... .+. .... .....+....+.+.+|||||..+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999998532110000 000 0000 111222334477899999999888777
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 71 RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
....++.+|++++|+|.++....... ..|. .+.. .++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~-~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWE-FADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEECCccCCC
Confidence 77788999999999999876555443 3333 3333 27899999999998753
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.64 E-value=3.1e-15 Score=117.83 Aligned_cols=114 Identities=22% Similarity=0.260 Sum_probs=78.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCcc----ceeeeeeEEEEE---CCeE-----E-----EEEEEeCCChh
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIP----TVFDNFSANVVV---DGST-----V-----NLGLWDTAGQE 65 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~i~d~~g~~ 65 (151)
..+...|+++|+.++|||||+++|.+......... +.+..+...... .+.. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 45667899999999999999999986654322221 111111100000 0111 1 26899999999
Q ss_pred cccccccccccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
.|..++...+..+|++++|+|+++ ++++..+ .. +.. .++|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~----~~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NI----LKR--RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HH----HHH--cCCCEEEEEECcCCc
Confidence 998888777889999999999987 5666655 32 222 378999999999985
No 217
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=6.9e-16 Score=124.03 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=83.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC-------------CCCccc---eeeee-eEEEEECCeEEEEEEEeCCChh
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFP-------------TDYIPT---VFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~-------------~~~~~~---~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
.++..+|+++|+.++|||||+++|+...-. .++.+. ...+. ..........+.+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 346779999999999999999999853210 000000 00011 1112233345789999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+|......+++.+|++++|+|.++..+.... ..|.. +.. .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~-~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQ-ADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHH-HHh--cCCCEEEEEECCCCCCC
Confidence 9888888889999999999999887766654 55533 333 27899999999998753
No 218
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=2.1e-15 Score=108.77 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=74.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-------------Cccce---eeee-eEEEEECCeEEEEEEEeCCChhccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-------------YIPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~-------------~~~~~---~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (151)
+|+++|++++|||||+++|+...-... +.+.. +.+. .....+....+++.+|||||..+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211000 00000 0111 111222234578889999999888877
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 71 RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+...++.+|++++|+|..+...-.. ..+...+.+ .++|++++.||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 7788999999999999876533222 223333333 2789999999999864
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.63 E-value=4.2e-15 Score=102.55 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=86.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC------CCC-----cc---ceeeee-eEEEEECCeEEEEEEEeCCChhccccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFP------TDY-----IP---TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~------~~~-----~~---~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (151)
.++|+++|..++|||||+++|+..... ..+ .+ ..+.+. .....+.....++.+.||||..+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 479999999999999999999853100 000 00 001111 112233444567889999999888766
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccccccccC---------------CCCC
Q 031880 71 RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQFSS---------------GHPG 134 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~~---------------~~~~ 134 (151)
....+..+|++++|+|......-.. ......+.+. +.| ++++.||+|+....+... ....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 6667889999999999876432222 2233334432 566 789999999853221110 1123
Q ss_pred CCceeccceeeccC
Q 031880 135 ATPITTSQVWVTND 148 (151)
Q Consensus 135 ~~~~~~s~~~~~~~ 148 (151)
..++.+|+..+.|.
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 55788888887763
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=3e-15 Score=105.09 Aligned_cols=139 Identities=13% Similarity=0.037 Sum_probs=82.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC--------------C-------Ccccee------ee-eeEEEEECCeEEEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF--PT--------------D-------YIPTVF------DN-FSANVVVDGSTVNLG 57 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~--~~--------------~-------~~~~~~------~~-~~~~~~~~~~~~~~~ 57 (151)
+|+++|+.++|||||+.+|+...- .. . ...... .+ ......+....+++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999874211 00 0 000000 00 011222233457889
Q ss_pred EEeCCChhcccccccccccCCcEEEEEEeCCChhH---H---HHHHHHHHHHHhhhCCCCCEEEEeeCCccccc---cc-
Q 031880 58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y---ENVYKKWIPELRHYAPNVPIVLVGTKLDLRED---KQ- 127 (151)
Q Consensus 58 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~---~~- 127 (151)
+|||||+.+|.......++.+|++++|+|+++... | ......|. ...+ ....|+++++||+|+... +.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART-LGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH-cCCCeEEEEEEccccccccccHHH
Confidence 99999998776655566788999999999987421 1 11112222 2222 234689999999999721 10
Q ss_pred ---cc-------C----CCCCCCceeccceeeccC
Q 031880 128 ---FS-------S----GHPGATPITTSQVWVTND 148 (151)
Q Consensus 128 ---~~-------~----~~~~~~~~~~s~~~~~~~ 148 (151)
+. . ......++.+|+..+.|.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCC
Confidence 00 1 112355788888887765
No 221
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.62 E-value=2.1e-15 Score=117.43 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=78.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCC--C-------------CCccce---eeee-eEEEEECCeEEEEEEEeCC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS--NTFP--T-------------DYIPTV---FDNF-SANVVVDGSTVNLGLWDTA 62 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~--~~~~--~-------------~~~~~~---~~~~-~~~~~~~~~~~~~~i~d~~ 62 (151)
.+.-+|+++|+.++|||||+++|+. +... + ++.+.. +..+ .....+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3566999999999999999999973 1110 0 000000 1111 1122344455889999999
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
|+.+|.......++.+|++++|+|.++..... . ..+...... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-T-RKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECCcccc
Confidence 99998876677889999999999998653222 2 333344333 3899999999999864
No 222
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=1.1e-14 Score=113.46 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=79.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc-CCCCCC---C--c----cce----------eeee-eEEEEECCeEEEEEEEeCC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS-NTFPTD---Y--I----PTV----------FDNF-SANVVVDGSTVNLGLWDTA 62 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~-~~~~~~---~--~----~~~----------~~~~-~~~~~~~~~~~~~~i~d~~ 62 (151)
.+..+|+++|++++|||||+++|+. ...... . . .+. +..+ .....++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 211110 0 0 011 1111 1223345556889999999
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
|+.+|.......++.+|++|+|+|.++...- .. ..+...... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t-~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RT-RKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HH-HHHHHHHHh--cCCCEEEEEECccccC
Confidence 9998877666778999999999998764221 12 334444433 3789999999999853
No 223
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=2.1e-14 Score=95.77 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=68.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEECCeEEEEEEEeCCChhc----------ccccccccc-
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED----------YNRLRPLSY- 75 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~- 75 (151)
.|+++|++|+|||||++.+.++.+.....++....... ....+. .+.+|||||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 38999999999999999999766555444444332221 222222 788999999433 222222233
Q ss_pred --cCCcEEEEEEeCCChhH--HHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 76 --RGADVFLLAFSLISKAS--YENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 76 --~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
...+.+++++|.....+ ...+ ..|+... +.|+++|+||+|+.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~-~~~l~~~-----~~~vi~v~nK~D~~ 123 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEM-LDWLEEL-----GIPFLVVLTKADKL 123 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHH-HHHHHHc-----CCCEEEEEEchhcC
Confidence 34678899999875522 2222 3444332 57999999999984
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.58 E-value=2.6e-14 Score=113.18 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=83.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC---CCCCCC--ccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDY--IPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
-|.++|+.++|||||+++|.+. .+..+. ..|....+. ..... ....+.+||+||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 5889999999999999999852 232221 112211111 12111 2245789999999998665556688999999
Q ss_pred EEEeCCC---hhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCccccccccc-------C-----CCCCCCceeccceeec
Q 031880 83 LAFSLIS---KASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQFS-------S-----GHPGATPITTSQVWVT 146 (151)
Q Consensus 83 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~-------~-----~~~~~~~~~~s~~~~~ 146 (151)
+|+|+++ +++...+ ..+... +.| ++||+||+|+.+..... . ......++.+|+..+.
T Consensus 80 LVVda~eg~~~qT~ehl-----~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 80 LVVACDDGVMAQTREHL-----AILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 9999886 3333333 222222 455 57999999986532211 0 1123557888888776
Q ss_pred cC
Q 031880 147 ND 148 (151)
Q Consensus 147 ~~ 148 (151)
+.
T Consensus 153 gI 154 (614)
T PRK10512 153 GI 154 (614)
T ss_pred CC
Confidence 54
No 225
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.58 E-value=1.9e-14 Score=101.29 Aligned_cols=114 Identities=25% Similarity=0.362 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEE-CCeEEEEEEEeCCChhccccc-----ccccccCCcE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRL-----RPLSYRGADV 80 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~~ 80 (151)
||+++|+++|||||+.+.+..+-.+.+. ...+.+... ...+ ......+++||.||+..+... ....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999998876543332 222222211 2222 233468999999999765443 3445899999
Q ss_pred EEEEEeCCChh---HHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 81 FLLAFSLISKA---SYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 81 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+|+|+|+.+.+ .+..+ ...+..+.+..++..+.|+.+|.|+-
T Consensus 80 LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred EEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccC
Confidence 99999998443 23343 55666677788999999999999974
No 226
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=1.8e-14 Score=115.81 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=78.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-C---CCCcc--ce----------eeee-eEEEEECCeEEEEEEEeCCChhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-P---TDYIP--TV----------FDNF-SANVVVDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~---~~~~~--~~----------~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (151)
++.-+|+++|+.++|||||+++|+...- . ..... +. +.+. .....+....+++.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3456999999999999999999974211 0 00000 00 0111 11122223347889999999998
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
|.......++.+|++++|+|..+....... ..| ..+.+. ++|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~~--~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVW-RQANRY--EVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 877777788999999999999876555443 333 334332 789999999999874
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=3.6e-14 Score=102.51 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=84.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChh--cccccccc-------c
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE--DYNRLRPL-------S 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--~~~~~~~~-------~ 74 (151)
....|++.|.|+||||||++.+...+. ..+|..|+-..+-.++..++ .++|++||||.- .....+.. .
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 346799999999999999999997544 56777777655555665555 568899999941 22222221 1
Q ss_pred ccCCcEEEEEEeCCChhH--HHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc
Q 031880 75 YRGADVFLLAFSLISKAS--YENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 127 (151)
-+=.++|+|++|.+.... .+.- ..++..+...+. .|+++|.||.|+.+.+.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK 297 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH
Confidence 234789999999875433 3443 567777777766 89999999999874433
No 228
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.55 E-value=1.8e-14 Score=109.50 Aligned_cols=139 Identities=18% Similarity=0.083 Sum_probs=84.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC---CCC--ccceeee-----------------eeEEEEECC------eEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP---TDY--IPTVFDN-----------------FSANVVVDG------STVN 55 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~---~~~--~~~~~~~-----------------~~~~~~~~~------~~~~ 55 (151)
+..++|+++|+.++|||||+++|.+.... .+. .-|.... +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56899999999999999999999753111 000 0000000 000000011 1467
Q ss_pred EEEEeCCChhcccccccccccCCcEEEEEEeCCChh----HHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc---
Q 031880 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF--- 128 (151)
Q Consensus 56 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--- 128 (151)
+.+||+||+++|..........+|++++|+|+++.. +...+ ..+.. ....|+++++||+|+.+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~~-~gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALEI-IGIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHHH-cCCCeEEEEEEccccCCHHHHHHH
Confidence 899999999999777666677899999999998542 22322 22222 223468999999998643221
Q ss_pred ----cCC-----CCCCCceeccceeeccC
Q 031880 129 ----SSG-----HPGATPITTSQVWVTND 148 (151)
Q Consensus 129 ----~~~-----~~~~~~~~~s~~~~~~~ 148 (151)
... .....++++|+..+.|.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi 184 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANI 184 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCCh
Confidence 110 11345788888776653
No 229
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.54 E-value=1.4e-14 Score=92.39 Aligned_cols=111 Identities=25% Similarity=0.302 Sum_probs=78.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCc-cceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYI-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
+||+++|+.|+|||+|+.++....+...+. ++.. +........+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 489999999999999999998777754332 2222 2233345677889999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccCCCCCCCceeccceeecc
Q 031880 86 SLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSSGHPGATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (151)
+.++..++..+ |...+.... .+.|.++++||.|+.+.+.+.. .....+++.++.++.|
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~-~~~~~~~~~s~~~~~~ 113 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQVAT-EEGLEFAETSAKTPEE 113 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCcCCH-HHHHHHHHHhCCCcch
Confidence 99999998764 666655433 4688999999999966554332 2233456666665543
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=8e-14 Score=105.66 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=74.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC-------CCC----C------CccceeeeeeEEEEECCeEEEEEEEeCCChh
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNT-------FPT----D------YIPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~-------~~~----~------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
....++|+++|+.++|||||+++|+... +.. . ....+.+ ...+.+......+.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 3467899999999999999999997420 000 0 0111111 1233344455678999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIV-LVGTKLDLRE 124 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~ 124 (151)
+|..........+|++++|+|+.....-... + .+..+... ++|.+ +++||+|+.+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~~~--gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLARQV--GVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCEEEEEEEecccCC
Confidence 8865544556778999999999863222221 2 22223322 66755 6899999864
No 231
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=3.9e-14 Score=101.49 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=81.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc------------c
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------------L 70 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------------~ 70 (151)
+.+.+.|+++|.|++|||||.|.+.+.+..+........+-...-.+.....++.++||||.-.-.. .
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3578999999999999999999999988765433333333332222333447889999999422211 1
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc
Q 031880 71 RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 127 (151)
-...+..||.+++++|+++.-. .+....++.++++ .++|-++|.||.|....+.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHH-hcCCceeeccchhcchhhh
Confidence 1223567999999999986322 2223445555554 4789999999999765433
No 232
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=2.4e-14 Score=115.49 Aligned_cols=115 Identities=19% Similarity=0.111 Sum_probs=78.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---------------CCCC---Cccceeeee-eEEEEECCeEEEEEEEeCCChh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT---------------FPTD---YIPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
+..||+++|+.++|||||+++|+... +... ...|..... ......++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45699999999999999999998521 1110 001111111 1122356667899999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+|.......++.+|++++|+|.......... ..|..... .+.|.++++||+|..
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhcc
Confidence 9887777788999999999998764333332 33333222 267889999999975
No 233
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.52 E-value=8.7e-14 Score=105.88 Aligned_cols=140 Identities=17% Similarity=0.072 Sum_probs=83.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCC--CCC---Cccceeee-----------------eeEEEEEC------CeEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTF--PTD---YIPTVFDN-----------------FSANVVVD------GSTV 54 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~--~~~---~~~~~~~~-----------------~~~~~~~~------~~~~ 54 (151)
....++|+++|+.++|||||+.+|.+.-. ..+ ...|.... +......+ ....
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 45679999999999999999999964211 000 00111110 00000001 0136
Q ss_pred EEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-
Q 031880 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS- 129 (151)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~- 129 (151)
.+.+|||||+++|..........+|++++|+|++++ .+...+ . .+.. ....|+++|+||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~----~l~~-~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-M----ALDI-IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-H----HHHH-cCCCcEEEEEEeeccccchhHHH
Confidence 789999999998866544445678999999999853 333333 2 2222 1224689999999986532211
Q ss_pred ------C-----CCCCCCceeccceeeccC
Q 031880 130 ------S-----GHPGATPITTSQVWVTND 148 (151)
Q Consensus 130 ------~-----~~~~~~~~~~s~~~~~~~ 148 (151)
. ......++++|+..+.+.
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCH
Confidence 1 112355688888776653
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=99.52 E-value=1.1e-13 Score=104.97 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=74.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC---C---C--ccc------eeeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT---D---Y--IPT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~---~---~--~~~------~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
...++|+++|+.++|||||+.+|++..... . + ... .+.+. .....+......+.++||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 457899999999999999999998521100 0 0 000 01111 1123333445678899999998886
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 124 (151)
......+..+|++++|+|......-... + .+..+... ++| ++++.||+|+.+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~-~-~~~~~~~~--g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTR-E-HILLARQV--GVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHH-H-HHHHHHHc--CCCEEEEEEEecCCcc
Confidence 6555556789999999998764222221 2 22333332 677 678999999864
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=99.51 E-value=2.2e-13 Score=103.32 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=73.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC---CCC-----Cccce------eeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF---PTD-----YIPTV------FDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~---~~~-----~~~~~------~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
...++|+++|..++|||||+++|+.... ... ..... +.+. .....+.....++.++||||+++|-
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 4578999999999999999999986210 000 00000 1111 1122233344678899999998876
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIV-LVGTKLDLRE 124 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~ 124 (151)
......+..+|++++|+|+.+...-.. ...+..+.. .++|.+ ++.||+|+.+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcc
Confidence 555566778999999999876432222 122233332 267855 6799999863
No 236
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.3e-14 Score=93.23 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=103.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
++.++|+++|--|+||||+..++.-+... ...|+.+.... .+ ..+..++++||..|+...+..|+.++.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve-~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE-TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc-cc--ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 47899999999999999999888866543 33455543322 22 2366889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccccccc---------C-CCCCCCceeccceeeccCCC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFS---------S-GHPGATPITTSQVWVTNDNS 150 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~---------~-~~~~~~~~~~s~~~~~~~~~ 150 (151)
|.|.+|+.........++..+++-- .+..++|++||.|..-.--.+ . ..+-...+++|+..+...+|
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999998777666455555555432 467789999999975321111 0 11224457888888776664
No 237
>CHL00071 tufA elongation factor Tu
Probab=99.50 E-value=2e-13 Score=103.90 Aligned_cols=118 Identities=20% Similarity=0.162 Sum_probs=75.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC--CC----Cc--cce------eeee-eEEEEECCeEEEEEEEeCCChhcc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFP--TD----YI--PTV------FDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~--~~----~~--~~~------~~~~-~~~~~~~~~~~~~~i~d~~g~~~~ 67 (151)
+...++|+++|.+++|||||+++|+...-. .. +. ... +.+. .....+.....++.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 346799999999999999999999963110 00 00 000 0011 111223334467789999999887
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccc
Q 031880 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 124 (151)
-......+..+|++++|+|......-.. ...+..+... ++| ++++.||.|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCC
Confidence 6655566788999999999875432222 2223333332 678 778999999864
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.50 E-value=1.8e-13 Score=105.58 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=75.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC------CCCCC--ccc-e-----eeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT------FPTDY--IPT-V-----FDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~------~~~~~--~~~-~-----~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
...++|+++|+.++|||||+++|+... ....+ ... . +.+. .....+......+.++|+||+++|-
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 457899999999999999999999521 11100 000 0 1111 1112223344678899999999886
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 124 (151)
......+..+|++++|+|..+...-... +.| ..+... ++| ++++.||+|+.+
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~-~~~~~~--gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTK-EHI-LLAKQV--GVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHH-HHH-HHHHHc--CCCeEEEEEecccccC
Confidence 6555667789999999998765333322 333 333332 677 788999999864
No 239
>PRK12739 elongation factor G; Reviewed
Probab=99.49 E-value=1.8e-13 Score=110.10 Aligned_cols=117 Identities=16% Similarity=0.038 Sum_probs=78.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCc--cce----------eeee-eEEEEECCeEEEEEEEeCCChhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP----TDYI--PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~----~~~~--~~~----------~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (151)
++..+|+++|+.++|||||+++|+...-. .... .+. +.+. .....+....+++.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 46789999999999999999999842110 0000 000 0111 11122222346789999999988
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
|.......++.+|++++|+|..+...-... . ....+.+ .++|++++.||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 877777788999999999999866443332 2 3333333 2789999999999874
No 240
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.1e-13 Score=90.86 Aligned_cols=117 Identities=19% Similarity=0.327 Sum_probs=90.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+.-|++++|--++|||||++.|-+++.. +..||.-.+ ...+.+.+ .+++.+|..|+...+..|+.++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4568999999999999999999987754 345554322 22334455 6788999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCccccc
Q 031880 85 FSLISKASYENVYKKWIPELRHY-APNVPIVLVGTKLDLRED 125 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 125 (151)
+|+.+.+.|.+.....-..+... ..+.|+++.+||+|.+..
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 99999999988844333333222 268999999999998754
No 241
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=5.7e-13 Score=95.04 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=71.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc---c-------c
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R 71 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~-------~ 71 (151)
...++|+++|.+|||||||+|++++.... ..+.+.+..........++ ..+.+|||||..+... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 45789999999999999999999986542 2222222222222233334 5688999999765421 1 1
Q ss_pred cccc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccc
Q 031880 72 PLSY--RGADVFLLAFSLISKASYENVYKKWIPELRHYAP---NVPIVLVGTKLDLRE 124 (151)
Q Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~Dl~~ 124 (151)
..++ ...+++++|..++.. .+.......++.+.+.+. -.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1122 257888888765532 222221344455554332 246999999999753
No 242
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=4e-13 Score=96.75 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=98.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccc-------cccCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------SYRGA 78 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~~~~~ 78 (151)
..+.++|-|++|||||++.+...+. ...|..|+....-..+.+++. ..+.+-|.||.-+-..+.+- .+++|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4678999999999999999996543 567777764443334444443 23889999996544433322 25789
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccc--c---CCCCCCCceeccceeecc
Q 031880 79 DVFLLAFSLISK---ASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQF--S---SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~--~---~~~~~~~~~~~s~~~~~~ 147 (151)
+..++|.|++.. ..|+.+ +.+..+++.+. .+.|.+||+||+|+++.... . ...++...++.|+..+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccc
Confidence 999999999988 888888 77777777664 47899999999999533222 1 223333467777777654
Q ss_pred C
Q 031880 148 D 148 (151)
Q Consensus 148 ~ 148 (151)
.
T Consensus 355 l 355 (366)
T KOG1489|consen 355 L 355 (366)
T ss_pred h
Confidence 3
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.47 E-value=2.3e-13 Score=103.50 Aligned_cols=139 Identities=19% Similarity=0.105 Sum_probs=82.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCC-C----------ccc-------------e------eeee-eEEEEECCeEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTD-Y----------IPT-------------V------FDNF-SANVVVDGSTV 54 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~-~----------~~~-------------~------~~~~-~~~~~~~~~~~ 54 (151)
++|+++|+.++|||||+.+|+...- ... . ..+ . +.+. .....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999974311 100 0 000 0 0001 11112233456
Q ss_pred EEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc-c----c
Q 031880 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ-F----S 129 (151)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~----~ 129 (151)
++.++||||+++|-......+..+|++++|+|......-... +.|. .+... ...+++++.||+|+.+... . .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~-~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSY-IASLL-GIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHH-HHHHc-CCCcEEEEEEecccccchHHHHHHHH
Confidence 888999999998865555567899999999998754322221 2222 12221 2346899999999863211 0 0
Q ss_pred C---------CCCCCCceeccceeeccC
Q 031880 130 S---------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 130 ~---------~~~~~~~~~~s~~~~~~~ 148 (151)
. ......++.+|+..+.|.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni 185 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNV 185 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCC
Confidence 0 112345788888887664
No 244
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=98.29 Aligned_cols=115 Identities=25% Similarity=0.272 Sum_probs=85.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc-----------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 71 (151)
..+||+++|.|++|||||+|++++..- ......|+.+.....+..++.. +.++||.|..+-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999997532 4555677777777788777865 5599999954322111
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
...+..++.+++|.|.+.+-+-+.. .....+.+. +.++++|.||-|+-+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEE 304 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCc
Confidence 1135679999999999887665554 455555554 8899999999998554
No 245
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=9.4e-13 Score=90.92 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=70.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCc---cceeeeeeEEEEECCeEEEEEEEeCCChhccccc-----------cc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYI---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 72 (151)
++|+++|.+|+|||||+|.+++........ +.+..........++ ..+.++||||..+.... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999765422111 111111122223344 56889999996544211 11
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccc
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAP---NVPIVLVGTKLDLRE 124 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~Dl~~ 124 (151)
....+.|++++|.++.+ .+ ......++.+.+.+. -.++++|.|+.|.-.
T Consensus 79 ~~~~g~~~illVi~~~~-~t--~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FT--EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hcCCCCEEEEEEEECCC-cC--HHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 12467899999999875 22 222344555555442 257889999998543
No 246
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=7.4e-13 Score=96.31 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=71.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc-------ccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLS 74 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~ 74 (151)
...++|+++|.+|+||||++|++++.... ....+............+ ..++.+|||||..+..... ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 36789999999999999999999976532 222222111111222233 4678999999966442211 111
Q ss_pred c--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccc
Q 031880 75 Y--RGADVFLLAFSLISKASYENVYKKWIPELRHYAP---NVPIVLVGTKLDLRE 124 (151)
Q Consensus 75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~Dl~~ 124 (151)
+ ...|++++|..++.. .+.......++.+...+. -.+++|+.|+.|...
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1 268999999665422 122222334454544432 246899999999654
No 247
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.46 E-value=7e-13 Score=93.36 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=71.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccce-----------------------eeeeeEE--------------EEEC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-----------------------FDNFSAN--------------VVVD 50 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-----------------------~~~~~~~--------------~~~~ 50 (151)
||+++|+.++|||||+.+|..+.+........ +...... -...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999765533111000 0000000 0011
Q ss_pred CeEEEEEEEeCCChhcccccccccc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.....+.+.|+||+++|.......+ ..+|++++|+|......-.. ..++..+... ++|+++|.||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence 2235788999999988865433334 36899999999875533222 3344444433 789999999999754
No 248
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.46 E-value=5.5e-13 Score=98.36 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=55.2
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVYKKWIPELRHY-APNVPIVLVGTKLD 121 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D 121 (151)
.+.+.+||++|+...+..|..++.+++++++|+|+++. ..+......|-..+... ..+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46788999999999999999999999999999999863 34444423333333322 25899999999999
Q ss_pred ccc
Q 031880 122 LRE 124 (151)
Q Consensus 122 l~~ 124 (151)
+-.
T Consensus 240 ~f~ 242 (317)
T cd00066 240 LFE 242 (317)
T ss_pred HHH
Confidence 754
No 249
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1e-12 Score=102.85 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=96.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccc------c-cc-
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP------L-SY- 75 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~------~-~~- 75 (151)
+..+|+++|+|+||||||.|++++.+. .+++...+.+..+......+.. +++.|.||......... . .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 466799999999999999999998665 4566666666666677666654 77999999654433221 1 23
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCCCCCCceeccceeecc
Q 031880 76 RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~ 147 (151)
...|.+|-|.|.++.+.-..+ . ++.++- +.|++++.|++|..+.+.+. ++.-++..+.+++.++..
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl-t--lQLlE~---g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL-T--LQLLEL---GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH-H--HHHHHc---CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCC
Confidence 457999999999987655544 2 222222 88999999999987765543 356677788888877654
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.45 E-value=9.8e-13 Score=96.82 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=53.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC-CCCccce-----eeeeeEE----------------EEECC-eEEEEEEEeCCCh-
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFP-TDYIPTV-----FDNFSAN----------------VVVDG-STVNLGLWDTAGQ- 64 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~-~~~~~~~-----~~~~~~~----------------~~~~~-~~~~~~i~d~~g~- 64 (151)
|+++|.++||||||+++|.+.... .+|..++ +..+... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 2232222 1111100 01122 3478999999997
Q ss_pred ---hccccccccc---ccCCcEEEEEEeCC
Q 031880 65 ---EDYNRLRPLS---YRGADVFLLAFSLI 88 (151)
Q Consensus 65 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 88 (151)
++++.+...+ ++.||++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444443343 78999999999996
No 251
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.45 E-value=6.9e-13 Score=102.53 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=85.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCC-C----------ccce-------------------eeeeeE-EEEECC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTD-Y----------IPTV-------------------FDNFSA-NVVVDG 51 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~~~-~----------~~~~-------------------~~~~~~-~~~~~~ 51 (151)
...++|+++|+.++|||||+.+|+...- ... . ..+. +.+... ......
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4679999999999999999999985321 110 0 0000 000111 111233
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--cc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FS 129 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~ 129 (151)
...++.++||||+++|.......+..+|++++|+|......-... ..+. .+... .-.+++++.||+|+.+.++ ..
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~~-l~~~l-g~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHSF-IATLL-GIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHHH-HHHHh-CCCceEEEEEeeccccchhHHHH
Confidence 456788999999988865444457899999999998754221111 1111 11111 1247899999999863221 10
Q ss_pred ----------CC---CCCCCceeccceeeccCC
Q 031880 130 ----------SG---HPGATPITTSQVWVTNDN 149 (151)
Q Consensus 130 ----------~~---~~~~~~~~~s~~~~~~~~ 149 (151)
.. .....++.+|+..+.|..
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcc
Confidence 01 123557888888877653
No 252
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.1e-13 Score=100.98 Aligned_cols=141 Identities=19% Similarity=0.143 Sum_probs=102.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCC------Cc----------cceeeeeeEEEEECCeEEEEEEEeCCChhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTD------YI----------PTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~~~------~~----------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 66 (151)
++.-++.++.+-.-|||||..||+...- ... .. -|.-.........++..+.++++||||+-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3455899999999999999999985321 111 00 011111111222336779999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--ccC------CCCCCCce
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FSS------GHPGATPI 138 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~------~~~~~~~~ 138 (151)
|.....+.+..|++++++.|.+..-.-+.. ..++.+++. +..+|+|.||+|++..+. +.. +.....++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 999999999999999999999877666666 666777776 889999999999985433 221 34455678
Q ss_pred eccceeeccC
Q 031880 139 TTSQVWVTND 148 (151)
Q Consensus 139 ~~s~~~~~~~ 148 (151)
-+|++++.|.
T Consensus 214 ~vSAK~G~~v 223 (650)
T KOG0462|consen 214 YVSAKTGLNV 223 (650)
T ss_pred EEEeccCccH
Confidence 8888888764
No 253
>PRK00007 elongation factor G; Reviewed
Probab=99.44 E-value=9e-13 Score=106.15 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=77.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCC--CC---------------CccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS--NTFP--TD---------------YIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~--~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
++..+|+++|..++|||||+++|+. +... +. ....+.......+.. ...++.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCCCc
Confidence 3567999999999999999999984 1110 00 000111111122223 3468889999999
Q ss_pred hcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.+|.......++.+|++++|+|......-... ..|. .+.+. ++|++++.||+|+..
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~-~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWR-QADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHH-HHHHc--CCCEEEEEECCCCCC
Confidence 88766666678889999999998766444443 3333 33332 789999999999864
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=99.43 E-value=1.9e-12 Score=98.23 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=75.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC---CC---C--ccc------eeeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP---TD---Y--IPT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~---~~---~--~~~------~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
...++|+++|+.++|||||+++|+..... .. + ... .+.+. .....+.....++.+.||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 46789999999999999999999863110 00 0 000 00111 1122333345678899999998886
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIV-LVGTKLDLRE 124 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~ 124 (151)
......+..+|++++|+|......-.. ...+..+... +.|.+ ++.||+|+.+
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcc
Confidence 665566789999999999876432222 2233334332 67875 6899999863
No 255
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=88.81 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=76.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEECCeEEEEEEEeCCC----------hhccccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAG----------QEDYNRLRP 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 72 (151)
+...-|+++|.++||||||||.|++.+--...+.|.+.+... .+.+++. +.+.|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 345689999999999999999999966434444555444433 3334443 77999999 233333333
Q ss_pred cccc---CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 73 LSYR---GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.|++ +..++++++|....-.-.. ..+++.+.+. ++|++|++||+|.-..
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~~--~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLEL--GIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEccccCCh
Confidence 3442 3578888999865433322 3445555554 8999999999997543
No 256
>COG2262 HflX GTPases [General function prediction only]
Probab=99.43 E-value=2e-12 Score=96.11 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=98.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCC---------hhcccccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG---------QEDYNRLRPL 73 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g---------~~~~~~~~~~ 73 (151)
.....|.++|.+++|||||.|+|.+... ..+..+++.+.....+.+.+ ...+-+-||.| .+.|++.. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence 3456899999999999999999997544 34555555555566666654 34677999998 23444332 2
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-CCCC-CCceeccceeecc
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-GHPG-ATPITTSQVWVTN 147 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-~~~~-~~~~~~s~~~~~~ 147 (151)
....+|.++.|.|.+++.....+ ....+.+.+.. .+.|+++|.||+|+-....... .... ..++-+|+.++.+
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~g 343 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEG 343 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcC
Confidence 45689999999999999777777 77777777763 6799999999999654333211 1111 1467777777654
No 257
>PLN03127 Elongation factor Tu; Provisional
Probab=99.42 E-value=2e-12 Score=99.28 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=73.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC------CCCCCC--ccc------eeeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN------TFPTDY--IPT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~------~~~~~~--~~~------~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
...++|+++|+.++|||||+++|.+. .....+ ... .+.+. .....+.....++.+.||||+.+|-
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 35789999999999999999999721 100000 000 00111 1223344445678899999998775
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 124 (151)
......+..+|++++|+|..+...-.. ...+..+... ++| ++++.||+|+.+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~ 191 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCC
Confidence 544445567999999999875432222 2222333332 678 578899999864
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=2.6e-13 Score=96.13 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=77.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-cc-ceeeeeeEEEEECCeEEEEEEEeCCChhc-------ccccccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-IP-TVFDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPL 73 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~ 73 (151)
....++|++.|.+|+|||||||+|+.+...+-. .+ ...........+++ -.+.+||+||.++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 346789999999999999999999965432211 11 11111122223344 4578999999765 3344455
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.+...|.++.+.+..++.--... ..|.+ +....-+.+++++.|.+|....
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~d-Vi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRD-VIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHH-HHHhccCceeEEEEehhhhhcc
Confidence 67889999999998876443333 34444 4333345799999999997543
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.42 E-value=1.5e-12 Score=104.10 Aligned_cols=143 Identities=18% Similarity=0.126 Sum_probs=83.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCC-----------Cccceee-------------------ee-eEEEEECC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTD-----------YIPTVFD-------------------NF-SANVVVDG 51 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~~~-----------~~~~~~~-------------------~~-~~~~~~~~ 51 (151)
...++|+++|++++|||||+++|+...- ... ...++.+ +. .....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4578999999999999999999995321 110 0011000 00 00111223
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc--ccccc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE--DKQFS 129 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--~~~~~ 129 (151)
...++.++||||+++|.......+..+|++++|+|......-... ..+ ..+... ...+++|+.||+|+.+ .....
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~-~~~~~~-~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHS-FIASLL-GIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHH-HHHHHh-CCCeEEEEEEecccccchhHHHH
Confidence 345788999999988755444457899999999998754322211 111 122221 2357899999999863 11110
Q ss_pred ----------C--CCCCCCceeccceeeccCC
Q 031880 130 ----------S--GHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 130 ----------~--~~~~~~~~~~s~~~~~~~~ 149 (151)
. ......++.+|+..+.|.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 0 1122346778887776643
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.41 E-value=4.7e-12 Score=91.57 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=65.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc-------ccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYR 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~ 76 (151)
-...++++|.|+||||||+++|.+-.. ..+|..|+.......+.+++ .++|+.|+||.-+-.. ..-...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 456899999999999999999997544 56777777776677777777 5688999998422211 2234578
Q ss_pred CCcEEEEEEeCCChhH
Q 031880 77 GADVFLLAFSLISKAS 92 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s 92 (151)
+||.+++|.|+....+
T Consensus 140 ~ADlIiiVld~~~~~~ 155 (365)
T COG1163 140 NADLIIIVLDVFEDPH 155 (365)
T ss_pred cCCEEEEEEecCCChh
Confidence 9999999999985554
No 261
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.39 E-value=1.3e-12 Score=107.06 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=81.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC--CC---------Cccce---eeeee---EEEEE--------------CC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFP--TD---------YIPTV---FDNFS---ANVVV--------------DG 51 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~--~~---------~~~~~---~~~~~---~~~~~--------------~~ 51 (151)
.++.-+|+++|+.++|||||+.+|+...-. .. +.+.. +.++. ..+.. ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345679999999999999999999853210 00 00000 00000 11111 22
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
..+.+.++||||+.+|.......++.+|++|+|+|+...-..... ..|.....+ ++|++++.||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHHC---CCCEEEEEECCccc
Confidence 367889999999999988777788999999999999876555444 455554444 88999999999976
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=2.3e-12 Score=98.94 Aligned_cols=141 Identities=13% Similarity=0.054 Sum_probs=87.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCC----------------------Ccccee------eee-eEEEEECCeE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTD----------------------YIPTVF------DNF-SANVVVDGST 53 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~~~----------------------~~~~~~------~~~-~~~~~~~~~~ 53 (151)
...++|+++|+.++|||||+.+|+...- ... ...... .+. ..........
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3578999999999999999998874211 000 000000 011 1122234456
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCCccccc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE-------NVYKKWIPELRHYAPNVP-IVLVGTKLDLRED 125 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 125 (151)
+.+.++|+||+++|-......+..+|++|+|+|+.+. .|+ ...+.|. .+.. .++| ++|++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~--~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT--LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH--cCCCcEEEEEEcccCCch
Confidence 7899999999999988777888999999999999862 232 2212222 1222 2664 7889999997521
Q ss_pred --c---------ccc---C----CCCCCCceeccceeeccC
Q 031880 126 --K---------QFS---S----GHPGATPITTSQVWVTND 148 (151)
Q Consensus 126 --~---------~~~---~----~~~~~~~~~~s~~~~~~~ 148 (151)
. ++. . ......++++|+..+.|.
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 0 010 0 112356788898888764
No 263
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.39 E-value=4.8e-13 Score=87.11 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=73.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChh-c---ccccccccccCCcEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE-D---YNRLRPLSYRGADVFL 82 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~---~~~~~~~~~~~~~~~i 82 (151)
-||+++|+.|+|||||+++|.+.... +..|.... +.=.++||||.- + +.........+|+.++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-----------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-----------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-----------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 38999999999999999999986532 22222111 112368999953 1 1111122346899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc-cccccc------CCCCCCCceeccceeec
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR-EDKQFS------SGHPGATPITTSQVWVT 146 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~------~~~~~~~~~~~s~~~~~ 146 (151)
++.|.+++.+.-. ..+...+ +.|+|=|.||+|+. ++..+. ....-...|.+|+.++.
T Consensus 69 ll~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 69 LLQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGE 132 (143)
T ss_pred EEecCCCCCccCC--chhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCc
Confidence 9999987654322 1222222 57999999999998 222222 12222334666666554
No 264
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=2.3e-12 Score=105.56 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=77.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccce------e------eee---eEEEEEC--------CeEEEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTV------F------DNF---SANVVVD--------GSTVNLGL 58 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~------~------~~~---~~~~~~~--------~~~~~~~i 58 (151)
++.-+|+++|+.++|||||+++|+...- ......+. . .+. ...+... +..+.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3456999999999999999999986311 10000000 0 000 0111121 23578999
Q ss_pred EeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 59 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+||||+.+|.......++.+|++|+|+|....-..... ..|...... +.|++++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc---CCCEEEEEEChhhh
Confidence 99999998877777788999999999998876444443 444333332 68999999999986
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.5e-12 Score=88.98 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=78.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccccccc---CCcEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFLL 83 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~i~ 83 (151)
-.|+++|+++||||+|.-+|..+.+.+.+.+.. + ......+... .++++|.||+.+.+.....++. .+-++||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie-p-n~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE-P-NEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeec-c-ceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 469999999999999999999885433211111 1 1222233333 3789999999988876656665 7999999
Q ss_pred EEeCC-ChhHHHHHHHHHHHHHhhh---CCCCCEEEEeeCCccc
Q 031880 84 AFSLI-SKASYENVYKKWIPELRHY---APNVPIVLVGTKLDLR 123 (151)
Q Consensus 84 v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~ 123 (151)
|.|.. .........+.+++.+... ...+|++++.||.|+.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99964 3333444436677766655 2468899999999974
No 266
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.36 E-value=3.4e-12 Score=94.97 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=54.6
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhh-hCCCCCEEEEeeCCc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVYKKWIPELRH-YAPNVPIVLVGTKLD 121 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 121 (151)
.+.+.+||.+|+...+..|..++.+++++++|.|+++- ..+......|-..+.. ...+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35678999999999999999999999999999999863 3444442333333322 226899999999999
Q ss_pred ccc
Q 031880 122 LRE 124 (151)
Q Consensus 122 l~~ 124 (151)
+-.
T Consensus 263 ~~~ 265 (342)
T smart00275 263 LFE 265 (342)
T ss_pred hHH
Confidence 754
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.36 E-value=1.9e-12 Score=104.11 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=72.6
Q ss_pred ECCCCCCHHHHHHHHhcCCCC--C--CC--cccee----------eee-eEEEEECCeEEEEEEEeCCChhccccccccc
Q 031880 12 VGDGAVGKTCMLISYTSNTFP--T--DY--IPTVF----------DNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (151)
Q Consensus 12 iG~~~~GKstli~~l~~~~~~--~--~~--~~~~~----------~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 74 (151)
+|+.++|||||+++|+...-. . .. ..+.. .+. .....+....+.+.+|||||+.+|.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999743110 0 00 00110 001 1111222344789999999998877766778
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+..+|++++++|.+........ ..|. .+.. .+.|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~-~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWR-QAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHH-HHHH--cCCCEEEEEECCCCCC
Confidence 8999999999999877665554 4443 3333 2789999999999864
No 268
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.36 E-value=7.3e-12 Score=96.25 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=74.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--CCCC------------------------CCccce---eeee-eEEEEECCe
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYIPTV---FDNF-SANVVVDGS 52 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~--~~~~------------------------~~~~~~---~~~~-~~~~~~~~~ 52 (151)
+...++|+++|+.++|||||+.+|+.. .... +..+.. +.+. .........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 346789999999999999999999852 1110 000000 0111 112223445
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhH---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCcc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y---ENVYKKWIPELRHYAPNVP-IVLVGTKLDL 122 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl 122 (151)
.+.+.++|+||+.+|-......+..+|++++|+|...... | ....+.|.- +... ++| ++++.||+|.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~~--gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFTL--GVKQMIVCINKMDD 157 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHHc--CCCeEEEEEEcccc
Confidence 6789999999999987766677889999999999876420 1 111123332 2222 666 6799999994
No 269
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.8e-12 Score=94.96 Aligned_cols=118 Identities=26% Similarity=0.242 Sum_probs=82.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc-ccccc--------cc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLR--------PL 73 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~--------~~ 73 (151)
..++|+++|.|+||||||+|.|..... ......|+.+.....+++++ +++.+.||.|..+ ..... ..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 458999999999999999999997644 45667777888888888888 5577999999765 11111 12
Q ss_pred cccCCcEEEEEEeC--CChhHHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCccccc
Q 031880 74 SYRGADVFLLAFSL--ISKASYENVYKKWIPELRHYA-------PNVPIVLVGTKLDLRED 125 (151)
Q Consensus 74 ~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~~~iivv~nK~Dl~~~ 125 (151)
.++.+|.+++|+|. ++-++-..+ ...+.....-. ...|++++.||.|+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 36789999999998 333333332 22223222211 23789999999998754
No 270
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.2e-11 Score=93.36 Aligned_cols=141 Identities=18% Similarity=0.131 Sum_probs=100.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC--CC-----C---------Ccc-ce-eeeeeEEEEE-CCeEEEEEEEeCCCh
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PT-----D---------YIP-TV-FDNFSANVVV-DGSTVNLGLWDTAGQ 64 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~--~~-----~---------~~~-~~-~~~~~~~~~~-~~~~~~~~i~d~~g~ 64 (151)
.+.-++.++.+-..|||||..|++...- .. + .+. |. .......... +++.|.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3455889999999999999999985321 11 0 011 11 1111222232 458899999999999
Q ss_pred hcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--ccC------CCCCCC
Q 031880 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FSS------GHPGAT 136 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~------~~~~~~ 136 (151)
-+|.....+.+..|.+++++.|.+..-.-+.+ ...+.+++. +..++.|.||+||+.... +.. ......
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d 162 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD 162 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcch
Confidence 99998888889999999999999988777777 778888887 889999999999985322 211 222334
Q ss_pred ceeccceeeccC
Q 031880 137 PITTSQVWVTND 148 (151)
Q Consensus 137 ~~~~s~~~~~~~ 148 (151)
.+.+|++++++.
T Consensus 163 av~~SAKtG~gI 174 (603)
T COG0481 163 AVLVSAKTGIGI 174 (603)
T ss_pred heeEecccCCCH
Confidence 577777777653
No 271
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.29 E-value=7.2e-11 Score=85.69 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=67.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------ccce-eeeeeEEEEECCeEEEEEEEeCCChhcc------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------IPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY------ 67 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~------ 67 (151)
-.++|+++|.+|+|||||++.|++....... ..+. .......+.-++..+.+.++||||-...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986543321 0111 1112334445678899999999992211
Q ss_pred ------------cc-------cccccc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 68 ------------NR-------LRPLSY--RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 68 ------------~~-------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+. ...... ...|++++.++.+. ..+..+. +..+++....+++|.|..|+|.-.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~D---i~~mk~Ls~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLD---IEFMKRLSKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHH---HHHHHHHTTTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHH---HHHHHHhcccccEEeEEecccccC
Confidence 00 000111 34688888888653 2222331 234455555889999999999643
No 272
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.29 E-value=1.5e-11 Score=99.67 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=77.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCC-Ccc-ce-----e------eee-----eEEEEECCeEEEEEEEeCCChh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTD-YIP-TV-----F------DNF-----SANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~-~~~-~~-----~------~~~-----~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
+.-+|+++|+.++|||||+.+|+...- ... ... +. . .+. ......++..+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 455899999999999999999985321 100 000 00 0 000 0111224456889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+|.......++.+|++++|+|......-... ..|...... +.|.+++.||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhh
Confidence 9877777788999999999998765443333 444443333 56889999999965
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.27 E-value=2.8e-11 Score=84.58 Aligned_cols=114 Identities=21% Similarity=0.194 Sum_probs=64.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccc-e--eeeeeEEEEECCeEEEEEEEeCCChhccccc-------c----c
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT-V--FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------R----P 72 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~----~ 72 (151)
++|+++|.+|+||||++|.+++.......... . ..........++ ..+.++||||..+.... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 68999999999999999999987654332111 1 111122334556 56789999995332211 0 1
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCC---CCEEEEeeCCccccc
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN---VPIVLVGTKLDLRED 125 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~iivv~nK~Dl~~~ 125 (151)
....+.|++++|+... +-+-.. ...++.+.+.++. .-++||.+..|....
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred hccCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 1245789999999987 322222 2334444443321 247888888875443
No 274
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.25 E-value=6.7e-11 Score=86.22 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=83.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc----cccc---cccCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRPL---SYRGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~~~---~~~~~~ 79 (151)
-|.++|-|++|||||++.+..-+ -+.+|..|+.......+.+ ...-.|.+=|.||.-+-.+ +-.. .++++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 46799999999999999999644 3678888876655555554 2334577999999543322 2222 257899
Q ss_pred EEEEEEeCCChh---HHHHHHHHHHHHHhhhC---CCCCEEEEeeCCccccc
Q 031880 80 VFLLAFSLISKA---SYENVYKKWIPELRHYA---PNVPIVLVGTKLDLRED 125 (151)
Q Consensus 80 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~ 125 (151)
..+.|+|++..+ -.+.. ..+..++..+. .+.|.+||+||+|+...
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 999999998554 35555 66777777765 47899999999996543
No 275
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.24 E-value=2.8e-11 Score=90.24 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=59.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-Cccc--eeeeeeEEEEECCeEEEEEEEeCCChhcccccccc-----ccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YIPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-----SYR 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-----~~~ 76 (151)
.+++|+|+|++|+|||||||.|.+-....+ ..++ .+.+...........-.+.+||.||.......... -+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 578999999999999999999986332211 1121 12222222222222224779999996543322222 356
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
..|.+|++.+-. -+-.. ..+...+++. +.|+.+|-+|+|.
T Consensus 114 ~yD~fiii~s~r--f~~nd--v~La~~i~~~--gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 114 RYDFFIIISSER--FTEND--VQLAKEIQRM--GKKFYFVRTKVDS 153 (376)
T ss_dssp G-SEEEEEESSS----HHH--HHHHHHHHHT--T-EEEEEE--HHH
T ss_pred ccCEEEEEeCCC--Cchhh--HHHHHHHHHc--CCcEEEEEecccc
Confidence 789888877642 22222 2445566654 7899999999995
No 276
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.2e-10 Score=86.78 Aligned_cols=148 Identities=15% Similarity=0.062 Sum_probs=90.2
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcC--CCCC--------------CC--------cccee-----eee-eEEEEECC
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------DY--------IPTVF-----DNF-SANVVVDG 51 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~--~~~~--------------~~--------~~~~~-----~~~-~~~~~~~~ 51 (151)
+....++++++|+..+|||||+-||+.+ .+.. .. ..+.+ .++ .....+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3457899999999999999999888853 1111 00 00000 111 11222334
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh---HHHHH-HHHHHHHHhhhCCCCCEEEEeeCCccccccc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYENV-YKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 127 (151)
..+.+.|.|+||+.+|-...-.-...||+.|+|+|+.+.+ +|... ...-...+.+...-..++|+.||.|+.+.++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 4578999999999888765556678899999999987652 11000 0000111222222234789999999875322
Q ss_pred cc----------------CCCCCCCceeccceeeccCC
Q 031880 128 FS----------------SGHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 128 ~~----------------~~~~~~~~~~~s~~~~~~~~ 149 (151)
.. .......+|.+|+-.+.|..
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLT 200 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccc
Confidence 11 12335668999998888764
No 277
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.3e-10 Score=89.15 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=93.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEE-CCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+.--|.++|+-.-|||||+..|-+...-.....-+..-+ ...+.. ++ -.+.+.||||+..|..++.+-...+|+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 455689999999999999999998765433222221111 223333 34 56789999999999999998889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccc------ccc-------CCCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDK------QFS-------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~------~~~-------~~~~~~~~~~~s~~~~~~~ 148 (151)
+|....|.-.=+. .+.|.... .++|++|..||+|.+... ++. ........+++|+.++.|.
T Consensus 230 LVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 230 LVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 9999887632222 23333322 489999999999976421 111 1233445688888887765
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.19 E-value=5.2e-10 Score=86.35 Aligned_cols=122 Identities=23% Similarity=0.319 Sum_probs=88.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+-+.+.++|+.++|||.|++.|++..+...+..+....|. ..+...++...+.+-|.+-. ......... ..||++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 45689999999999999999999998887766666655553 34444566666777776643 222222222 6799999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS 129 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 129 (151)
++||++++.+|..+ ...+..-... ...|+++|+.|+|+.+..+..
T Consensus 501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~ 545 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQRY 545 (625)
T ss_pred EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhhcc
Confidence 99999999999988 4433333222 589999999999997765443
No 279
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.19 E-value=1.6e-10 Score=77.68 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=43.8
Q ss_pred EEEEeCCChhcc----cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031880 56 LGLWDTAGQEDY----NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKL 120 (151)
Q Consensus 56 ~~i~d~~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~ 120 (151)
+.++||||.... ......+++.+|++++|.+.+...+-... ..+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 779999996432 23455567999999999999876555555 6666666654 33488999984
No 280
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.9e-10 Score=87.12 Aligned_cols=138 Identities=18% Similarity=0.137 Sum_probs=95.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce-eeeeeEEEEECC-eEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..-|+++|+-..|||||+..+-..+.......-. .......+..+. ..-.+.+.||||++.|..++.+-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45568999999999999999999877654433333 233344555541 2346889999999999999988888899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccc-----------cC--CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQF-----------SS--GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~-----------~~--~~~~~~~~~~s~~~~~~ 147 (151)
+|.++++.--=+. .+.+.+.. .+.|++|..||+|.++.... .. ......++++|+..+.+
T Consensus 84 LVVa~dDGv~pQT-----iEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQT-----IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhH-----HHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999987532222 23332222 49999999999998743211 11 12224567778777665
No 281
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=8.1e-11 Score=94.14 Aligned_cols=117 Identities=18% Similarity=0.112 Sum_probs=85.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--CCCC--CCc------cce------eeee-eEEEEECCe-EEEEEEEeCCCh
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN--TFPT--DYI------PTV------FDNF-SANVVVDGS-TVNLGLWDTAGQ 64 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~--~~~~--~~~------~~~------~~~~-~~~~~~~~~-~~~~~i~d~~g~ 64 (151)
.++.-+|.++|+-.+|||||..+++.. .... +.. ... +.+. ......... .++++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456779999999999999999999842 1111 100 000 0111 112222333 589999999999
Q ss_pred hcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
-+|.....+.++-+|++++|+|....-..+.. ..|....+. ++|.+++.||+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccc
Confidence 99999999999999999999999877666665 667666655 89999999999954
No 282
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.6e-10 Score=90.40 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=85.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCc---------ccee------eee-e--EEEE---ECCeEEEEEEEeC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYI---------PTVF------DNF-S--ANVV---VDGSTVNLGLWDT 61 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~---------~~~~------~~~-~--~~~~---~~~~~~~~~i~d~ 61 (151)
+....++.++|+-+.|||+|...|..+..+.-+. .+.. ... . .++. .+++.+.+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3467899999999999999999998765432211 1110 001 0 0111 1456788999999
Q ss_pred CChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
||+-+|.....+.++-+|++++++|+...-+++.- ..+...++. +.|+++|.||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---RLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---cCcEEEEEehhHH
Confidence 99999998888899999999999999988887775 444444444 8999999999993
No 283
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.13 E-value=5.2e-10 Score=84.76 Aligned_cols=82 Identities=23% Similarity=0.215 Sum_probs=54.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEE---------------------EC-CeEEEEEEEeCCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVV---------------------VD-GSTVNLGLWDTAG 63 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~d~~g 63 (151)
++|+++|.++||||||+++|.+.... .+|..++......... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 2343333111111111 11 2346799999999
Q ss_pred hh----ccccccccc---ccCCcEEEEEEeCC
Q 031880 64 QE----DYNRLRPLS---YRGADVFLLAFSLI 88 (151)
Q Consensus 64 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 88 (151)
.. +.+.+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 333333344 78999999999986
No 284
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.11 E-value=8.2e-10 Score=87.20 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=71.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-ccceeeeeeEEEEECCeEEEEEEEeCCChhcccc-------c---cc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-IPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------L---RP 72 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~---~~ 72 (151)
..++|+++|.+|+||||++|.+++... .... .+.+..........++ ..+.++||||...... . ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 357899999999999999999998653 2221 1111111122222344 5688999999765321 0 11
Q ss_pred cccc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCC---CCEEEEeeCCcccc
Q 031880 73 LSYR--GADVFLLAFSLISKASYENVYKKWIPELRHYAPN---VPIVLVGTKLDLRE 124 (151)
Q Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~iivv~nK~Dl~~ 124 (151)
.++. .+|++++|..++.......- ..+++.+.+.+.. .-+|||.|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1223 58999999887533222122 3566666665532 34789999988754
No 285
>PRK09866 hypothetical protein; Provisional
Probab=99.11 E-value=4.2e-10 Score=88.58 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=58.9
Q ss_pred EEEEEEeCCChhccc-c----cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc---
Q 031880 54 VNLGLWDTAGQEDYN-R----LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED--- 125 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~-~----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--- 125 (151)
.++.+.||||..... . .....+..+|+|++|.|.....+... ....+.+.+..++.|+++|.||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence 456789999975421 1 12235889999999999987544444 2345556554334699999999998541
Q ss_pred --ccccC----C-----CCCCCceeccceeeccC
Q 031880 126 --KQFSS----G-----HPGATPITTSQVWVTND 148 (151)
Q Consensus 126 --~~~~~----~-----~~~~~~~~~s~~~~~~~ 148 (151)
..+.. . ......+.+|+..+.+.
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLA 341 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Confidence 11111 1 11334688888887664
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.10 E-value=8.8e-10 Score=77.75 Aligned_cols=108 Identities=23% Similarity=0.177 Sum_probs=66.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
....|+++|.+|+|||||++.+.............+. + .+ ......++.++||||.- ... ....+.+|.++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 3567999999999999999999864211110000111 1 11 11234567899999854 112 1235789999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCE-EEEeeCCccc
Q 031880 85 FSLISKASYENVYKKWIPELRHYAPNVPI-VLVGTKLDLR 123 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~ 123 (151)
+|.+....... ..+...+... +.|. ++|.||.|+.
T Consensus 111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~ 146 (225)
T cd01882 111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLF 146 (225)
T ss_pred EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccC
Confidence 99875433322 2334444432 5674 5599999985
No 287
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.10 E-value=8.3e-11 Score=89.43 Aligned_cols=139 Identities=17% Similarity=0.053 Sum_probs=93.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc--cccc-------ccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR-------PLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~-------~~~ 74 (151)
..-.++++|-|+||||||++.+..... .+.|..|+..-+..++.+.. ..+++.||||.-+- +..+ .+.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 345789999999999999998886544 56666666655555554444 66889999994211 1111 112
Q ss_pred ccCCcEEEEEEeCCCh--hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC----------CCCCCCceeccc
Q 031880 75 YRGADVFLLAFSLISK--ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS----------GHPGATPITTSQ 142 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~----------~~~~~~~~~~s~ 142 (151)
.+=-.+|+++.|++.. -|...- -.+++.|...+.+.|+|+|.||+|+-....+.+ +......+++|.
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 2334588999998754 344443 567888888888999999999999865444433 334455666665
Q ss_pred eeec
Q 031880 143 VWVT 146 (151)
Q Consensus 143 ~~~~ 146 (151)
.+..
T Consensus 324 ~~ee 327 (620)
T KOG1490|consen 324 VQEE 327 (620)
T ss_pred cchh
Confidence 5543
No 288
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.07 E-value=6.7e-10 Score=85.54 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=83.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC---CCCCC--ccce--eeeeeE---------EE---EEC-------------
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNT---FPTDY--IPTV--FDNFSA---------NV---VVD------------- 50 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~---~~~~~--~~~~--~~~~~~---------~~---~~~------------- 50 (151)
....++|.++|+-..|||||+..|.+-. +..+. .-|. +..+.. .. ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4567899999999999999999999531 11110 0000 000000 00 000
Q ss_pred ---CeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc
Q 031880 51 ---GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126 (151)
Q Consensus 51 ---~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 126 (151)
.....+.++|+||+++|-......+..+|++++|+|+.... .-... +.+ ..+.. ..-.++++|.||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~-lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEI-MKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHH-cCCCcEEEEEecccccCHH
Confidence 00246889999999988665556678899999999998631 21111 222 22221 1234689999999986422
Q ss_pred cccC------------CCCCCCceeccceeecc
Q 031880 127 QFSS------------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 127 ~~~~------------~~~~~~~~~~s~~~~~~ 147 (151)
.... .......+.+|+..+.|
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n 220 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN 220 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC
Confidence 2110 11345567888777654
No 289
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.07 E-value=4.4e-10 Score=83.04 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=52.3
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHH-------HHHHHHHHHHHhhhC-----CCCCEEEEeeCCc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY-------ENVYKKWIPELRHYA-----PNVPIVLVGTKLD 121 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~-----~~~~iivv~nK~D 121 (151)
..+.++|++|+..-+..|..++.++++++||.++++-... +.+ ..-+..+...+ .+.+++++.||.|
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM-~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRM-HESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHH-HHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 6788999999998888999999999999999998754322 222 22222222222 5799999999999
Q ss_pred cccc
Q 031880 122 LRED 125 (151)
Q Consensus 122 l~~~ 125 (151)
|-.+
T Consensus 274 LFeE 277 (354)
T KOG0082|consen 274 LFEE 277 (354)
T ss_pred HHHH
Confidence 8543
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.07 E-value=8.3e-10 Score=83.52 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=82.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCccc--------e----e-eeeeEEEEECCeEEEEEEEeCCChhcccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYIPT--------V----F-DNFSANVVVDGSTVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~--~~~~~~~~--------~----~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (151)
..-+|+++.+-..|||||+..|+.++ |.....-. . + ....+...+..+.++++|.||||+.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999999643 22110000 0 1 11233334556668999999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 127 (151)
...+.++-.|+++++.|....--=+.- =...+++.. +.+-|||.||+|-++.|.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~~---gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALAL---GLKPIVVINKIDRPDARP 137 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHHc---CCCcEEEEeCCCCCCCCH
Confidence 999999999999999998754211111 122334443 778899999999876543
No 291
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.05 E-value=3.9e-10 Score=80.25 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
.++.-|+++|..|||||||++||..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHH
Confidence 3567899999999999999999884
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.03 E-value=3.7e-09 Score=79.61 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=76.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC----CCC-------------CC----Cccceeeee----eEEEE-ECCeEEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN----TFP-------------TD----YIPTVFDNF----SANVV-VDGSTVNLGL 58 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~----~~~-------------~~----~~~~~~~~~----~~~~~-~~~~~~~~~i 58 (151)
-.+.|.++|+.++|||||+++|.+. ... ++ ...|+...+ ...+. .++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4678999999999999999999987 221 11 112333333 22333 2456678999
Q ss_pred EeCCChhc--------ccc----c-----------------cccccc-CCcEEEEEE-eCC----ChhHHHHHHHHHHHH
Q 031880 59 WDTAGQED--------YNR----L-----------------RPLSYR-GADVFLLAF-SLI----SKASYENVYKKWIPE 103 (151)
Q Consensus 59 ~d~~g~~~--------~~~----~-----------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 103 (151)
+||+|-.. -.. . +...+. .++..++|. |.+ .++.+......|+.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998211 111 0 111133 678888887 653 234566666888999
Q ss_pred HhhhCCCCCEEEEeeCCc
Q 031880 104 LRHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 104 ~~~~~~~~~iivv~nK~D 121 (151)
+++. ++|.+++.||.|
T Consensus 176 Lk~~--~kPfiivlN~~d 191 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTH 191 (492)
T ss_pred HHhc--CCCEEEEEECcC
Confidence 8886 899999999999
No 293
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.97 E-value=3.6e-09 Score=87.95 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=65.9
Q ss_pred CHHHHHHHHhcCCCCCCCccceeeee-eEEEEECC----------------eEEEEEEEeCCChhcccccccccccCCcE
Q 031880 18 GKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDG----------------STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 18 GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
+||||+.++.+.........-..-.. ...+..+. ..-.+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 49999999997665433222221111 11111110 00127899999999998877777888999
Q ss_pred EEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 81 FLLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 81 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+++|+|+++ ++++..+ . .+.. .++|+++|+||+|+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCcc
Confidence 999999986 4555544 2 2222 2689999999999853
No 294
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.96 E-value=2.7e-10 Score=87.51 Aligned_cols=137 Identities=26% Similarity=0.375 Sum_probs=106.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
.++|+.|+|..++|||+|+++++.+.|.++ ..+....+.+.+..++..+.+.+.|..|... ..|..+.|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 468999999999999999999999998765 3455667788888888888898999877333 2456789999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccc----------ccccccCCCCCCCceeccceeeccC
Q 031880 85 FSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLR----------EDKQFSSGHPGATPITTSQVWVTND 148 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~----------~~~~~~~~~~~~~~~~~s~~~~~~~ 148 (151)
|.+.+..+|..+ +.+...+..+. ..+|+++++++.-.. ..++...+...+.++++.+..+.+.
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 999999999998 77766665432 578899999885432 2344445778888899888777654
No 295
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.2e-09 Score=79.28 Aligned_cols=118 Identities=23% Similarity=0.240 Sum_probs=75.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccce--eeeeeEEEEEC------Ce---------------------------
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV--FDNFSANVVVD------GS--------------------------- 52 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~------~~--------------------------- 52 (151)
=|+++|+...||||||+.|+.+.+++-..... .+.+..-+.-+ +.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 48999999999999999999998865322222 11111111111 00
Q ss_pred ------EEEEEEEeCCChh-----------cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEE
Q 031880 53 ------TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVL 115 (151)
Q Consensus 53 ------~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiv 115 (151)
--.+.|+||||.- .|....+++..++|.|+++||....+--++. +..+..++-. .-.+=|
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiRV 216 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIRV 216 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeEE
Confidence 1347899999931 2333445567899999999998755444444 5556666543 334567
Q ss_pred EeeCCcccccccc
Q 031880 116 VGTKLDLREDKQF 128 (151)
Q Consensus 116 v~nK~Dl~~~~~~ 128 (151)
|.||.|..+..+.
T Consensus 217 VLNKADqVdtqqL 229 (532)
T KOG1954|consen 217 VLNKADQVDTQQL 229 (532)
T ss_pred EeccccccCHHHH
Confidence 7899998765554
No 296
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-09 Score=75.61 Aligned_cols=117 Identities=23% Similarity=0.351 Sum_probs=76.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--CccceeeeeeEEEEECCeEEEEEEEeCCChhcccc-----cccccccCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGA 78 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~ 78 (151)
.-||+++|.+|+||||+-..+..+...-+ ....+-+....++.+-| ...+.+||..|++.+-. .....+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 56999999999999998766664321111 11111112122333222 26788999999885532 334568899
Q ss_pred cEEEEEEeCCChhHHHHHHHHHH---HHHhhhCCCCCEEEEeeCCcccc
Q 031880 79 DVFLLAFSLISKASYENVYKKWI---PELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
++++++||+..++--..+ ..+. +.+.+..+...+++...|.|+..
T Consensus 83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 999999999877555544 3433 45556667788999999999863
No 297
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.94 E-value=9.8e-09 Score=72.88 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=41.2
Q ss_pred EEEEEEeCCChhcc-------------ccccccccc-CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031880 54 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTK 119 (151)
Q Consensus 54 ~~~~i~d~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 119 (151)
..+.++|+||.... +.+...+++ ..+.+++|.|....-.-... ..+.+.+.+ .+.|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 45789999997422 112333455 45688889987543221121 233344433 27899999999
Q ss_pred Ccccc
Q 031880 120 LDLRE 124 (151)
Q Consensus 120 ~Dl~~ 124 (151)
+|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 298
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.94 E-value=8.2e-09 Score=75.23 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccC---C-cE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---A-DV 80 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~---~-~~ 80 (151)
.-+|+++|+.++|||||+.+|.+...... ..-.+..| ..+-...+...++.+|-..|.-....+....+.. + ..
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~Kk-gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETVKK-GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccccCC-CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 45899999999999999999998653222 11112222 2233333445677788877765555544444332 2 47
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHH
Q 031880 81 FLLAFSLISKASYENVYKKWIPEL 104 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~ 104 (151)
+|++.|+++++.+.+-++.|...+
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl 154 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVL 154 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHH
Confidence 888899999977655447776644
No 299
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=3.5e-09 Score=69.40 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
+++++|.+|+|||||+|++++..................+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532111111112223344443 4689999995
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=98.92 E-value=1.1e-08 Score=77.12 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=55.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCe---------------EEEEEEEeCCChhccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~ 68 (151)
..++|.++|.|+||||||+++|.+... ..++..++.......+.+.+. ..++.++|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 457999999999999999999987544 334444443333333333322 2458999999964322
Q ss_pred c----cc---cccccCCcEEEEEEeCC
Q 031880 69 R----LR---PLSYRGADVFLLAFSLI 88 (151)
Q Consensus 69 ~----~~---~~~~~~~~~~i~v~d~~ 88 (151)
. +. -..++.+|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 11 12357899999999973
No 301
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.7e-08 Score=74.82 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=70.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--C-----cc--ceeee-eeEEEEECCeEEEEEEEeCCChhccc------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--Y-----IP--TVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN------ 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~--~-----~~--~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~------ 68 (151)
..+.++++|++|.|||||+|.|+...+..+ + .+ +.... +...+.-++....+.+.||||-.++-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 458999999999999999999987644332 0 11 11111 12233345778899999999922111
Q ss_pred -------------------cccccccc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 69 -------------------RLRPLSYR--GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 69 -------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
...+..+. +.|++++.+..+ ...+..+.-..++ +....+.+|.|.-|+|.-
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk---~l~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMK---KLSKKVNLIPVIAKADTL 171 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHH---HHhccccccceeeccccC
Confidence 11112233 567888777754 3334444233334 444488899999999964
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.91 E-value=1.6e-09 Score=76.90 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=35.4
Q ss_pred EEEEEeCCChhcccccccccc--------cCCcEEEEEEeCC---ChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFLLAFSLI---SKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
.+.++|||||.++-..+.... ...-+++++.|.. ++..|-.. .++.......-+.|.+.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence 577999999977754443322 3456888888864 44445333 1111111111289999999999997
Q ss_pred c
Q 031880 124 E 124 (151)
Q Consensus 124 ~ 124 (151)
+
T Consensus 170 ~ 170 (238)
T PF03029_consen 170 S 170 (238)
T ss_dssp -
T ss_pred c
Confidence 6
No 303
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.91 E-value=1.8e-09 Score=77.09 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=63.1
Q ss_pred hcccccccccccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCc
Q 031880 65 EDYNRLRPLSYRGADVFLLAFSLISKA-SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATP 137 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~ 137 (151)
+++..+.+.+++++|++++|||+.++. ++..+ ..|+..+.. .++|+++|+||+||.+.+.+.. ...+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v 100 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQV 100 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeE
Confidence 677778888999999999999999877 89898 889887765 4899999999999965444321 2345667
Q ss_pred eeccceeecc
Q 031880 138 ITTSQVWVTN 147 (151)
Q Consensus 138 ~~~s~~~~~~ 147 (151)
+++|+.++.+
T Consensus 101 ~~~SAktg~g 110 (245)
T TIGR00157 101 LMTSSKNQDG 110 (245)
T ss_pred EEEecCCchh
Confidence 8888887654
No 304
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.90 E-value=3.9e-08 Score=72.63 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=72.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCC----------Cccceeeee-eEEEEECCeEEEEEEEeCCChhccc----
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN---- 68 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~---- 68 (151)
...++|+++|++|.|||||+|.|++...... ..++..... ...+.-++....+.++||||-.++-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3578999999999999999999998643322 112222222 2344446778899999999932221
Q ss_pred ----------------------ccccccc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 69 ----------------------RLRPLSY--RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 69 ----------------------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
..+...+ .+.|++++....+ +..+..+. +..+.+..+.+.+|.|.-|+|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLD---IEAMKRLSKRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHH---HHHHHHHhcccCeeeeeeccccC
Confidence 1111112 2467777777654 34444442 23444444578899999999964
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.88 E-value=1.2e-08 Score=76.18 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=54.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCe---------------EEEEEEEeCCChhcccc-
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR- 69 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~~- 69 (151)
++|.++|.|+||||||.+++.+... ..++..++.......+.+.+. ..++.+.|+||......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999997653 234444443333333333321 13589999999643211
Q ss_pred ---c---ccccccCCcEEEEEEeCC
Q 031880 70 ---L---RPLSYRGADVFLLAFSLI 88 (151)
Q Consensus 70 ---~---~~~~~~~~~~~i~v~d~~ 88 (151)
+ .-..++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 112357899999999974
No 306
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.83 E-value=2e-08 Score=76.28 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=51.4
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVYKKWIPELRHY-APNVPIVLVGTKLDL 122 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl 122 (151)
..+.++|++|+...+..|..++.++++||+|.++++- ..+.+....|-..+... ..+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5678999999999899999999999999999997532 22333323333333322 268999999999997
Q ss_pred cc
Q 031880 123 RE 124 (151)
Q Consensus 123 ~~ 124 (151)
-.
T Consensus 316 f~ 317 (389)
T PF00503_consen 316 FE 317 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 307
>PRK13768 GTPase; Provisional
Probab=98.83 E-value=7.5e-09 Score=74.26 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=43.3
Q ss_pred EEEEEeCCChhccc---cccccc---ccC--CcEEEEEEeCCChhHHHHH-HHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 55 NLGLWDTAGQEDYN---RLRPLS---YRG--ADVFLLAFSLISKASYENV-YKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 55 ~~~i~d~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.+.+||+||+.+.. ..+..+ +.. .+++++++|.......... ...|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 57799999976543 222222 222 8999999998643322221 12333333322348999999999998644
No 308
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=1.9e-08 Score=70.54 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCC---------CccceeeeeeE-EEEECCeEEEEEEEeCCChhcc---c
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YIPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDY---N 68 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~---~ 68 (151)
...-.++|+++|.+|.|||||++.++....... +..|.+..... .+.-++...++.++||||-.++ +
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 344579999999999999999999886433221 11111111111 2223577888999999993221 1
Q ss_pred ccc-----------------------ccccc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 69 RLR-----------------------PLSYR--GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 69 ~~~-----------------------~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
.+| +..+. +.|++++.+..+ ..++..+.-.+++.+.+ -+.++.|.-|+|-
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeeccc
Confidence 111 11222 357777777655 45555553444555544 5678889999994
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.81 E-value=1.3e-08 Score=73.66 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=52.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCe---------------EEEEEEEeCCChhcccc---
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR--- 69 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~~--- 69 (151)
|+++|.|+||||||.+++.+.... .++..++.......+.+.+. ...++++|+||..+-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999986553 34444443333333333332 23589999999643221
Q ss_pred -cccc---cccCCcEEEEEEeCC
Q 031880 70 -LRPL---SYRGADVFLLAFSLI 88 (151)
Q Consensus 70 -~~~~---~~~~~~~~i~v~d~~ 88 (151)
.... .++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112 257899999999863
No 310
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.78 E-value=7.7e-08 Score=74.32 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=63.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEE--ECCeEEEEEEEeCCChhcccccccccccC----C
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVV--VDGSTVNLGLWDTAGQEDYNRLRPLSYRG----A 78 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 78 (151)
.-.|+|+|+.++|||||+.+|.+.. .+.++.+-.|.. .+. ..+...++++|-..|...+..+.+..+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4689999999999999999987643 223344333322 122 12334678999998866666665555442 2
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHH
Q 031880 79 DVFLLAFSLISKASYENVYKKWIPEL 104 (151)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (151)
-.+|+|.|++.++.+-.-+..|+..+
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHH
Confidence 48999999999988753336665544
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.8e-08 Score=74.23 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=78.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHh--cCCC------CCCC--ccce----------e-eeeeEEEEECCeEEEEEEEeCCC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYT--SNTF------PTDY--IPTV----------F-DNFSANVVVDGSTVNLGLWDTAG 63 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~--~~~~------~~~~--~~~~----------~-~~~~~~~~~~~~~~~~~i~d~~g 63 (151)
++-.++||-+|.+|||||..+|+ ++.. .... ..+. + .....-+..+...+.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45578999999999999999877 2211 1100 0010 0 11123344555668899999999
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+++|..-+-+.+..+|.+++|+|....-.-..+ .+++..+- .++|++=+.||.|-+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDRE 146 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccc
Confidence 999998877788899999999998755333332 22333322 489999999999954
No 312
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.7e-08 Score=65.67 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=34.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
..++|+++|.+|+|||||+|+|.+.... +....++.. ...+... . .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~-~--~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLM-K--RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcC-C--CEEEEECcCC
Confidence 4678999999999999999999975432 222222111 1122222 2 2569999983
No 313
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=3.7e-08 Score=66.61 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=37.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~ 64 (151)
..++++++|.+++|||||++++.+..+.. ..+....+. ...+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 45799999999999999999999876521 111112222 1223333 34779999994
No 314
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.72 E-value=4.6e-08 Score=66.25 Aligned_cols=55 Identities=24% Similarity=0.135 Sum_probs=35.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCCh
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~ 64 (151)
.++++++|.+++|||||+|++.+...... .+..+.+. ...+..+. .+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 47999999999999999999997654211 11111111 12222322 4779999983
No 315
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.7e-07 Score=69.09 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=85.6
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCC------------CCCCcccee-------------------eeeeE-EEEE
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTF------------PTDYIPTVF-------------------DNFSA-NVVV 49 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~------------~~~~~~~~~-------------------~~~~~-~~~~ 49 (151)
.....++++-+|+-.-||||||-||+.+.- ......+.. -++.. ...+
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 345689999999999999999999986411 000001110 00100 1112
Q ss_pred CCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc
Q 031880 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS 129 (151)
Q Consensus 50 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 129 (151)
.-..-+|.+-||||++.|-.....-..-||.+|+++|.-. ....- ...-..+.....=.-+++..||+||.+-.+-.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~Q-TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQ-TRRHSFIASLLGIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHH-hHHHHHHHHHhCCcEEEEEEeeecccccCHHH
Confidence 2334578899999999987655556678999999999842 22111 11111222221223478899999997533221
Q ss_pred ------------C--CCCCCCceeccceeeccC
Q 031880 130 ------------S--GHPGATPITTSQVWVTND 148 (151)
Q Consensus 130 ------------~--~~~~~~~~~~s~~~~~~~ 148 (151)
. ......+|..|+..+.|.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 0 233446788888887764
No 316
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.72 E-value=6.1e-08 Score=64.46 Aligned_cols=57 Identities=21% Similarity=0.141 Sum_probs=37.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
...+++++|.+++|||||++++.+... ....++.+.+........+ ..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcCC
Confidence 457899999999999999999996542 2233333333322222112 25889999983
No 317
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.67 E-value=7.7e-09 Score=65.35 Aligned_cols=118 Identities=23% Similarity=0.139 Sum_probs=71.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc----ccccccccccCCcEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSYRGADVFL 82 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~~~~~~~i 82 (151)
-|++++|..|+|||||.+.+.+.... |..|... .+++.. .+||||.-- +-........+++.++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAv------e~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAV------EFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--hccccee------eccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 47999999999999999999876432 1222222 222221 678898431 1111223457899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccce
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQV 143 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~ 143 (151)
++-..++++|--.. -+.... ..|+|=|.+|.||.+...++. +......|++++.
T Consensus 70 ~v~~and~~s~f~p--~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 70 YVHAANDPESRFPP--GFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eeecccCccccCCc--cccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEecc
Confidence 99999887653221 122222 456899999999986544432 3333444555543
No 318
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.67 E-value=9.3e-08 Score=69.48 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=36.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
..++++++|.++||||||+|+|.+.... .....++. ....+.+.. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999976532 12111111 122333332 4679999997
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.64 E-value=6.2e-07 Score=63.54 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=64.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc-------cccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSY 75 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~ 75 (151)
.-..+++++|-|.||||||+..+..-.. ...|..|+..-....+.+++. .+++.|.||.-+-.+ ..-+..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence 3456899999999999999999986433 355666666666667777774 577999998432221 222346
Q ss_pred cCCcEEEEEEeCCChhHHHHH
Q 031880 76 RGADVFLLAFSLISKASYENV 96 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~ 96 (151)
+.+|.+++|.|.+..+.-..+
T Consensus 138 rtaDlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREI 158 (364)
T ss_pred ecccEEEEEecCCcchhHHHH
Confidence 789999999999865544433
No 320
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=8.6e-08 Score=67.39 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=71.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc-ccc--ccccccCCcEEEE
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRL--RPLSYRGADVFLL 83 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-~~~--~~~~~~~~~~~i~ 83 (151)
-+|+++|..-+||||+..-...+-.+.++..-........-++.+.-+.+++||.||+-.+ ... ....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 4599999999999998876665543322111111111111123446688999999998543 222 2345899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHh---hhCCCCCEEEEeeCCcc
Q 031880 84 AFSLISKASYENVYKKWIPELR---HYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~iivv~nK~Dl 122 (151)
|+|..+. -.+.+ ..+...+. +..+++.+-|...|.|-
T Consensus 108 vIDaQdd-y~eal-a~L~~~v~raykvNp~in~EVfiHKvDG 147 (347)
T KOG3887|consen 108 VIDAQDD-YMEAL-ARLHMTVERAYKVNPNINFEVFIHKVDG 147 (347)
T ss_pred EEechHH-HHHHH-HHHHHHhhheeecCCCceEEEEEEeccC
Confidence 9997543 22222 33333333 34478888899999993
No 321
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=7.4e-07 Score=69.30 Aligned_cols=144 Identities=16% Similarity=0.103 Sum_probs=86.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCC------------------CCc----cce-----eeee-eEEEEECCeEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------DYI----PTV-----FDNF-SANVVVDGSTV 54 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~--~~~~------------------~~~----~~~-----~~~~-~~~~~~~~~~~ 54 (151)
..++++++|+..+|||||.-+++.. .... .|. .|. +... .+...++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4578999999999999999877743 0000 000 000 1111 12333455567
Q ss_pred EEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHH---H--HHHHHHhhhCCCCCEEEEeeCCcccccccc-
Q 031880 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVY---K--KWIPELRHYAPNVPIVLVGTKLDLREDKQF- 128 (151)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~---~--~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~- 128 (151)
.+.+.|+||+..|-...-.-...+|..++|.|++.. .|+.-. . .-...+-+...-.-++|+.||.|+-+..+-
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 899999999988876555566779999999998632 332210 0 001111222223457899999998643221
Q ss_pred ----------------cCCCCCCCceeccceeeccCC
Q 031880 129 ----------------SSGHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 129 ----------------~~~~~~~~~~~~s~~~~~~~~ 149 (151)
........+|.+|...+.|..
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 113444567888888887754
No 322
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.61 E-value=2.3e-07 Score=67.79 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=37.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
..++++++|.++||||||+|+|.+...... .+..+.+. ...+..+. .+.++||||.-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998654211 11111111 12233332 47799999974
No 323
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.60 E-value=5.5e-08 Score=64.86 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=32.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--C-----CccceeeeeeEEEEECCeEEEEEEEeCCChhccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPT--D-----YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
-.++++|++|||||||+|.|....... + .......+...-+...+. -.++||||-..+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 358999999999999999999763211 0 111112222223333221 3489999976654
No 324
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.9e-07 Score=73.46 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=78.1
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCC--CCC------CccceeeeeeEEEE-------ECCeEEEEEEEeCCChhc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTF--PTD------YIPTVFDNFSANVV-------VDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~--~~~------~~~~~~~~~~~~~~-------~~~~~~~~~i~d~~g~~~ 66 (151)
.....-+|+++.+-.-|||||+..|....- .+. +..+.++.....++ .-.+.+.+.++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 345667899999999999999998885321 111 11111122222222 233678999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISK---ASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 121 (151)
|.+......+-+|+++..+|+... ++..-+.+.|.+ +...++|.||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhh
Confidence 999888888889999999998654 333333333443 667899999999
No 325
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.2e-07 Score=73.24 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=73.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce----eeeeeEE---------EEECC----eEEEEEEEeCCChhccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV----FDNFSAN---------VVVDG----STVNLGLWDTAGQEDYN 68 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~----~~~~~~~---------~~~~~----~~~~~~i~d~~g~~~~~ 68 (151)
..-|||+|+-.+|||-|+..+.+.+......... +.+|... +.-+. .---+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 3468999999999999999888754432222221 1111100 00001 11236799999999999
Q ss_pred ccccccccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 031880 69 RLRPLSYRGADVFLLAFSLISK---ASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 121 (151)
.++.+...-||.+|+|.|+... ++...+ ..++. .+.|.||..||+|
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiD 603 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKID 603 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhh
Confidence 9988888999999999998643 333333 33333 3889999999999
No 326
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=68.33 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=38.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~ 64 (151)
..++++++|-|+||||||||+|.+.... ...+..+.+. ...+.++.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 4578999999999999999999987652 1122223332 223434442 779999995
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=1.2e-07 Score=65.12 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
..+++++|.+|+|||||+|+|....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999753
No 328
>PRK12288 GTPase RsgA; Reviewed
Probab=98.52 E-value=1.4e-07 Score=70.48 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~ 30 (151)
++|+|.+|||||||+|+|++..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999753
No 329
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-07 Score=67.17 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=50.0
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhhC--CCCCEEEEeeCC
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENVYKKWIPELRHYA--PNVPIVLVGTKL 120 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~~iivv~nK~ 120 (151)
.+.|+++|.+|+.+-+..|-.++++..++|+|...+.-. .+.+. -.+++.+.... ..+.+|+..||.
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~Ea-L~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHH-HHHHHHHHhhhHHhhhheeEEecHH
Confidence 366999999999999999999999999999998876421 11111 12222222211 367899999999
Q ss_pred cccc
Q 031880 121 DLRE 124 (151)
Q Consensus 121 Dl~~ 124 (151)
|+-.
T Consensus 280 Dlla 283 (379)
T KOG0099|consen 280 DLLA 283 (379)
T ss_pred HHHH
Confidence 9743
No 330
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.51 E-value=5.4e-07 Score=62.44 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=46.4
Q ss_pred EEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCE--EEEeeCCccccc-------
Q 031880 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI--VLVGTKLDLRED------- 125 (151)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i--ivv~nK~Dl~~~------- 125 (151)
...++++.|..-..... . .-++.+|.|+|+.+..+... .... ++.. ++++||+|+.+.
T Consensus 93 D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 93 EMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhccccccccHHH
Confidence 34466777732111111 1 12688999999986554221 1111 2233 899999999742
Q ss_pred --ccccCCCCCCCceeccceeeccC
Q 031880 126 --KQFSSGHPGATPITTSQVWVTND 148 (151)
Q Consensus 126 --~~~~~~~~~~~~~~~s~~~~~~~ 148 (151)
+..........++++|+.++.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCH
Confidence 11112245677899999887764
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=5.8e-07 Score=59.77 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=35.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-P-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
...+++++|.+++|||||+|.+.+... . .....++.... .+... ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence 457899999999999999999997543 1 12222222221 22222 24779999983
No 332
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=9e-07 Score=65.33 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=69.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCC----CCCCcccee-ee----ee-----EEEE-ECCeEEEEEEEeCCChhcc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTF----PTDYIPTVF-DN----FS-----ANVV-VDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~----~~~~~~~~~-~~----~~-----~~~~-~~~~~~~~~i~d~~g~~~~ 67 (151)
.+..+++.++|.-.+|||||.+++..-.. .....++.. .+ +. .... .+++..++.++|.||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 45689999999999999999999985422 211111110 00 00 0111 2456788999999998754
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
-...-.-..-.|.+++|+|+.....-+.+....+..+- ....+||.||.|+-
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~l 135 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVL 135 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccc
Confidence 43333334456899999999765443333112222221 23467778888763
No 333
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.46 E-value=6e-07 Score=65.60 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=72.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-CccceeeeeeEEEEE-CCeEEEEEEEeCCC---------hhccccccccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVVV-DGSTVNLGLWDTAG---------QEDYNRLRPLS 74 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g---------~~~~~~~~~~~ 74 (151)
.--|.++|.+++|||||+++|..-...+. ....+.+........ ++. .+-+.||.| ...|+... ..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATL-ee 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATL-EE 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence 34689999999999999999996544332 222222222222222 232 355889988 12333322 23
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCcccc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVP----IVLVGTKLDLRE 124 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~----iivv~nK~Dl~~ 124 (151)
...+|.++-|.|++++..-.+. +..+.-+.+.. +..| ++=|-||.|.+.
T Consensus 255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 5679999999999999776666 66677776653 2223 566788888754
No 334
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.40 E-value=2.3e-06 Score=64.24 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=54.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCe---------------EEEEEEEeCCChhccc-
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN- 68 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~- 68 (151)
+++.++|.|++|||||.+.+..... ...|..++.......+.+.+. ...+.+.|.||.-.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 8999999999999999999997754 234444433332333333331 2467899999964322
Q ss_pred ---ccccc---cccCCcEEEEEEeCC
Q 031880 69 ---RLRPL---SYRGADVFLLAFSLI 88 (151)
Q Consensus 69 ---~~~~~---~~~~~~~~i~v~d~~ 88 (151)
..... .++.+|+++.|.+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 22122 367899999999974
No 335
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.38 E-value=1.9e-06 Score=73.58 Aligned_cols=110 Identities=23% Similarity=0.204 Sum_probs=62.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC----cc--ceeeeeeEEEEECCeEEEEEEEeCCChhc--------cccccccc
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFPTDY----IP--TVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS 74 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~ 74 (151)
.+|+|++|+||||++.+- +..++-.. .. ....+......+.++ -.++||+|..- ....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999876 33332211 00 011111222223332 33889998321 11223333
Q ss_pred c---------cCCcEEEEEEeCCChh-----HH----HHHHHHHHHHHhhhC-CCCCEEEEeeCCccc
Q 031880 75 Y---------RGADVFLLAFSLISKA-----SY----ENVYKKWIPELRHYA-PNVPIVLVGTKLDLR 123 (151)
Q Consensus 75 ~---------~~~~~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~ 123 (151)
+ +-.++||+++|+.+.. .. ..+ ...+.++.+.. -..||.|+.+|+|+-
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 2 3489999999986442 11 122 33344444333 489999999999975
No 336
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.35 E-value=2.3e-06 Score=63.56 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=38.3
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.+.+.++||+|....... ....+|.++++.+.........+ .. ..+ ...-++|.||+|+..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDN 208 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccc
Confidence 467889999997633322 35679999999764444444443 21 111 112389999999764
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.34 E-value=7.3e-07 Score=65.17 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~ 30 (151)
..++++|++|+|||||+|.|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999999754
No 338
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.2e-06 Score=61.85 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=54.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEE------------C----CeEEEEEEEeCCChh---
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVV------------D----GSTVNLGLWDTAGQE--- 65 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~d~~g~~--- 65 (151)
.+++.++|.|+||||||.+.+..... ..+|..++-+.....+.+ . -....++++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997654 355555542222211111 1 123568899998743
Q ss_pred -ccccccccc---ccCCcEEEEEEeCC
Q 031880 66 -DYNRLRPLS---YRGADVFLLAFSLI 88 (151)
Q Consensus 66 -~~~~~~~~~---~~~~~~~i~v~d~~ 88 (151)
+-+.+-..| ++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 333333333 57899999999875
No 339
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=8.1e-07 Score=63.49 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|.+|||||||+|+|.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999999999999975
No 340
>PRK12289 GTPase RsgA; Reviewed
Probab=98.31 E-value=8.4e-07 Score=66.46 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++|+|++|||||||+|+|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999653
No 341
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=7.6e-08 Score=72.44 Aligned_cols=115 Identities=19% Similarity=0.128 Sum_probs=84.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--C----CCCCccce-----------eeeeeEEEEECCeEEEEEEEeCCChhcc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT--F----PTDYIPTV-----------FDNFSANVVVDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~--~----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 67 (151)
+.-+|.++..-.+||||...|++.-. . ..+...|. -.....-+.++.+.+++.++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34478899999999999999887421 0 00001111 1112345666788899999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+-...++++--|+++.|||.+..-.-+.+ ..|...=.. ++|-.++.||.|.-
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKL 167 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhh
Confidence 99999999999999999999876655666 666554332 78989999999953
No 342
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.28 E-value=8.6e-06 Score=57.49 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=51.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC--CccceeeeeeEEEEEC-CeEEEEEEEeCCChhcccccc------c
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--YIPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLR------P 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~------~ 72 (151)
....-|.++|++++|||+|+|++++. .|... ..+++........... +....+.++||+|........ .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999987 55321 1222222222222221 234678899999975443211 1
Q ss_pred ccccC--CcEEEEEEeCCC
Q 031880 73 LSYRG--ADVFLLAFSLIS 89 (151)
Q Consensus 73 ~~~~~--~~~~i~v~d~~~ 89 (151)
..+.. ++.+|+..+...
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 11222 677777766543
No 343
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=8.2e-07 Score=64.52 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC------CCCC-ccceeeeeeEEEEEC-CeEEEEEEEeCCChhccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDY-IPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~------~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~ 68 (151)
-.+++|++|||||||+|+|..... .... ......+...-+.+. +. .|.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCccC
Confidence 468999999999999999996321 1111 222233333333342 22 289999977665
No 344
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.2e-06 Score=62.00 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=71.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc---CCCC---CCCccc-----e---eee-eeEEEEECCeEEEEEEEeCCChhcccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS---NTFP---TDYIPT-----V---FDN-FSANVVVDGSTVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~---~~~~---~~~~~~-----~---~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (151)
.-+||..+|.-.-|||||...+.. ..+. ..|... . +.+ ...++.+.-..-.....|+||+.+|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 357999999999999999876552 1110 011100 0 111 133445554445667899999988754
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccccccc
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQF 128 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~ 128 (151)
.--.-....|+.|+|.+.++..-=+.. +.. .+.++. ++| ++++.||+|+-++++.
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTr-EHi--Llarqv-Gvp~ivvflnK~Dmvdd~el 146 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTR-EHI--LLARQV-GVPYIVVFLNKVDMVDDEEL 146 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcch-hhh--hhhhhc-CCcEEEEEEecccccCcHHH
Confidence 333344568999999998875322221 111 112222 554 7889999999875544
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.23 E-value=2.4e-06 Score=64.34 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.++.++|.+|||||||+|+++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999974
No 346
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.23 E-value=8.3e-06 Score=60.01 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=37.5
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.+.+.|.||+|..... ......+|.++++-..... +.+ ......+ .+.|.++|.||+|+...
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el-~~~~~~l----~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDL-QGIKAGL----MEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHH-HHHHHHH----hhhccEEEEEcccccch
Confidence 4678899999854222 1245667888877543322 333 2222222 25678999999998643
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.20 E-value=8.3e-06 Score=60.05 Aligned_cols=84 Identities=21% Similarity=0.169 Sum_probs=54.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEEC---------------CeEEEEEEEeCCChhccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVD---------------GSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~d~~g~~~~~ 68 (151)
..+++.++|.|+||||||.|.+...... .++..++-+.....+.+. .....++++|+.|.-+-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4679999999999999999999976553 334444332222233321 234679999998853332
Q ss_pred ----cccccc---ccCCcEEEEEEeCC
Q 031880 69 ----RLRPLS---YRGADVFLLAFSLI 88 (151)
Q Consensus 69 ----~~~~~~---~~~~~~~i~v~d~~ 88 (151)
.+-..| ++.+|+++-|.++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 222223 46788888887653
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.20 E-value=5.8e-06 Score=59.33 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=64.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCcc-ceeeeeeE-EEEECCeEEEEEEEeCCCh----------hcccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIP-TVFDNFSA-NVVVDGSTVNLGLWDTAGQ----------EDYNRLR 71 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 71 (151)
.+...++++|.+++|||+|++-+...+....... ..+.+... ...+. -.+.+.|.||- .++..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999987655433222 22222221 22222 34668899992 1222223
Q ss_pred cccccC---CcEEEEEEeCCCh-hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 72 PLSYRG---ADVFLLAFSLISK-ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 72 ~~~~~~---~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
..++.+ --.++++.|++-+ .--+.....|.. +. ++|..+|.||||...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---e~--~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---EN--NVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---hc--CCCeEEeeehhhhhh
Confidence 333322 2244555555422 111222133443 32 899999999999754
No 349
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1.2e-05 Score=57.87 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=68.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-----EEEEECCeEEEEEEEeCCChh-------ccc----
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-----ANVVVDGSTVNLGLWDTAGQE-------DYN---- 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~d~~g~~-------~~~---- 68 (151)
-.++|+-+|.+|.|||||+..|++-.|.....+-...... ..+.-.+...++.+.||.|-. .|+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 4689999999999999999999998876543333322221 112224677889999999821 111
Q ss_pred -------cccc---------ccccCC--cEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 69 -------RLRP---------LSYRGA--DVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 69 -------~~~~---------~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
...+ ..++++ |++++.+..+ ..++..+.-..++.+.. .+.+|.|.-|.|-
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds---kVNIIPvIAKaDt 188 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS---KVNIIPVIAKADT 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh---hhhhHHHHHHhhh
Confidence 0000 013444 4555555544 45566553333444443 5667777788874
No 350
>PRK00098 GTPase RsgA; Reviewed
Probab=98.19 E-value=2.7e-06 Score=62.54 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|||||||+|.|++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999753
No 351
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=7.7e-06 Score=58.08 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=68.1
Q ss_pred eEEEEEECCCCC--CHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEE--EEEEeCCChhcccccccccccCCcEE
Q 031880 6 FIKCVTVGDGAV--GKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVN--LGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 6 ~~ki~viG~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+--.+++|-+|| ||.+|..+|....|..+..+.....+ ...+++++.|. +.+.=.+--+++.--+....+...++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 345789999999 99999999998877554333332221 11222222211 22221111111111112223446799
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
+++||++..+.+..+ +.|+....-..-+ -++.+|||.|-
T Consensus 83 vmvfdlse~s~l~al-qdwl~htdinsfd-illcignkvdr 121 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDAL-QDWLPHTDINSFD-ILLCIGNKVDR 121 (418)
T ss_pred EEEEeccchhhhHHH-Hhhccccccccch-hheeccccccc
Confidence 999999999999999 9998865443222 25788999994
No 352
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.16 E-value=2.2e-05 Score=56.04 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=60.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccc------c-cccccccC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------R-LRPLSYRG 77 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~-~~~~~~~~ 77 (151)
..+|-++|-|.+||||++..+.+-.. .+.|..++-.+....+.+++ -++++.|.||.-+-. . ..-+..+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 34889999999999999999986432 34555555444444444444 568899999842211 1 12234677
Q ss_pred CcEEEEEEeCCChhHHHHH
Q 031880 78 ADVFLLAFSLISKASYENV 96 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~ 96 (151)
|+.+++|.|+..+-+...+
T Consensus 137 cnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred ccEEEEEeeccCcccHHHH
Confidence 9999999999877666555
No 353
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=9.1e-06 Score=63.68 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=69.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEE-ECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+-++++|++|+|||||++.|...- ... +.......++ ..++.-++.+.++|. +..++. ...+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk~----ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TKQ----TIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH-HHh----hhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeE
Confidence 356788999999999999998777421 111 1122223333 456777889999883 222222 2345689999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 124 (151)
+.+|.+-.-....+ .++..+... +.| ++-|+++.|+-.
T Consensus 139 LlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 139 LLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred EEeccccCceehHH--HHHHHHhhc--CCCceEEEEeeccccc
Confidence 99998755444444 344444433 555 678899999864
No 354
>PRK13796 GTPase YqeH; Provisional
Probab=98.11 E-value=5.4e-06 Score=62.59 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.++.++|.+|||||||+|+|+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47899999999999999999954
No 355
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.09 E-value=1.9e-05 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998865
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.05 E-value=9e-05 Score=49.30 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=38.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTA 62 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 62 (151)
..+||.+-|+|||||||++.++...--. ..-+..-.+...+.-++...-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~--~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE--KGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh--cCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 4789999999999999999887742110 0122344455566666777777788875
No 357
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.03 E-value=1.8e-06 Score=60.55 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=46.0
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhhC--CCCCEEEEeeC
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVYKKWIPELRHYA--PNVPIVLVGTK 119 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~--~~~~iivv~nK 119 (151)
+.+.+.+.|.+|+..-+..|-.++++...++++..++.- ....+- ..++.-+-.+. .+.++|+..||
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence 345677888888877777777788777766666554322 112222 22233232222 58899999999
Q ss_pred Ccccccc
Q 031880 120 LDLREDK 126 (151)
Q Consensus 120 ~Dl~~~~ 126 (151)
.|+-++.
T Consensus 276 kDlLEek 282 (359)
T KOG0085|consen 276 KDLLEEK 282 (359)
T ss_pred hhhhhhh
Confidence 9986543
No 358
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.2e-05 Score=59.03 Aligned_cols=139 Identities=17% Similarity=0.097 Sum_probs=78.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC---CCCCC----------Cccce-----e----eeee--EEEEEC----CeEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN---TFPTD----------YIPTV-----F----DNFS--ANVVVD----GSTVNL 56 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~---~~~~~----------~~~~~-----~----~~~~--~~~~~~----~~~~~~ 56 (151)
..++|.++|+-.-|||||..+|.+- .+..+ |..+. . ..|. ..+..- .-.-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4799999999999999999998852 11111 00000 0 0000 000000 123468
Q ss_pred EEEeCCChhcccccccccccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC--
Q 031880 57 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-- 130 (151)
Q Consensus 57 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-- 130 (151)
.+.|.||++-....--.-..-.|++++|+..+.+ ++-+.+ .+++-. .-..++++-||+||-..++..+
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-----~AleIi-gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-----MALEII-GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-----HHHhhh-ccceEEEEecccceecHHHHHHHH
Confidence 8999999987654322222336999999998743 444443 122211 1235899999999864333221
Q ss_pred ----------CCCCCCceeccceeeccCC
Q 031880 131 ----------GHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 131 ----------~~~~~~~~~~s~~~~~~~~ 149 (151)
...+...+.+|+..+.|.+
T Consensus 163 ~qIk~FvkGt~Ae~aPIIPiSA~~~~NID 191 (415)
T COG5257 163 EQIKEFVKGTVAENAPIIPISAQHKANID 191 (415)
T ss_pred HHHHHHhcccccCCCceeeehhhhccCHH
Confidence 1233345666766666543
No 359
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.01 E-value=5.8e-06 Score=60.48 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=52.8
Q ss_pred cccccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-----cCCCCCCCceeccceee
Q 031880 72 PLSYRGADVFLLAFSLISKA-SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-----SSGHPGATPITTSQVWV 145 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~s~~~~ 145 (151)
+..+.++|.+++|+|+.++. ++..+ +.|+..+... ++|+++|+||+||.+.... .....+..++.+|+..+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 44578999999999999887 88887 7788777653 7899999999999654221 11223455677777665
Q ss_pred cc
Q 031880 146 TN 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 150 ~g 151 (287)
T cd01854 150 EG 151 (287)
T ss_pred cc
Confidence 44
No 360
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=7.3e-06 Score=60.26 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=50.3
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------CCCCCCCceeccceeecc
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~ 147 (151)
...++|.+++|+|+.++.++......|+..+.. .++|+++|+||+|+.+..... ....+..++.+|+..+.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 458999999999998876655554777777654 378999999999996332211 122345667777776544
No 361
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=7.8e-06 Score=64.21 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=75.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-----CCC-CCccceeeee----eEEEE-------ECCeEEEEEEEeCCChhcc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT-----FPT-DYIPTVFDNF----SANVV-------VDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~-----~~~-~~~~~~~~~~----~~~~~-------~~~~~~~~~i~d~~g~~~~ 67 (151)
+.-+|.+.-.-.+||||+-+|.+.-. +.. ....+.-+.. ...++ ..+..+.+.++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 34467788889999999999888421 110 0111111100 11111 2234688999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
.....+.++--|++|++++....-.-+.. ..|...- ++ ++|-+...||.|-
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-ry--~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-RY--NVPRICFINKMDR 168 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-hc--CCCeEEEEehhhh
Confidence 98888899999999999997654333333 4554443 33 8999999999993
No 362
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0001 Score=58.83 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=68.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-Cccceeeee----------------------------------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNF---------------------------------------- 43 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~---------------------------------------- 43 (151)
.-.||+|.|...+||||++|+++..+.-++ ..+++....
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 457999999999999999999996544221 111110000
Q ss_pred ---eEEEEECCeE-----EEEEEEeCCChhcc---cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC
Q 031880 44 ---SANVVVDGST-----VNLGLWDTAGQEDY---NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP 112 (151)
Q Consensus 44 ---~~~~~~~~~~-----~~~~i~d~~g~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 112 (151)
...+...+.. -.+.+.|.||.+-- ..-...+..++|++|+|.+..+..+..+ +.++....+. ...
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CCc
Confidence 0011111110 13568889986432 2233445678999999999865554444 4555555442 334
Q ss_pred EEEEeeCCccccc
Q 031880 113 IVLVGTKLDLRED 125 (151)
Q Consensus 113 iivv~nK~Dl~~~ 125 (151)
++++-||-|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 6777788787543
No 363
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=2.3e-05 Score=60.64 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=76.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC------CC--CccceeeeeeEEEEE-----------------------CCeE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP------TD--YIPTVFDNFSANVVV-----------------------DGST 53 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~------~~--~~~~~~~~~~~~~~~-----------------------~~~~ 53 (151)
+.-++-++.+-..|||||...|....-+ ++ +..+-.+.....+++ ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4457889999999999999988853211 11 111111111112221 3346
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 121 (151)
+.+.++|.||+-+|.+...+.++-.|+.+.|.|.-+.--.+.. ..+.+++.+ .+.=+++.||.|
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~D 161 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMD 161 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhh
Confidence 8899999999999999999999999999999998776555554 444455544 333477889999
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.89 E-value=1e-05 Score=52.93 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=43.7
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----CCCCCCceeccceee
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----GHPGATPITTSQVWV 145 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----~~~~~~~~~~s~~~~ 145 (151)
..+..+|++++|+|+.++.+... ..+.+.+.+...+.|+++|+||+|+.+...+.. +..+...+.+|+..+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 34678999999999987765432 122333332224789999999999864333211 122344566666554
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.6e-05 Score=59.61 Aligned_cols=74 Identities=20% Similarity=0.186 Sum_probs=50.1
Q ss_pred ccccccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----CCCCCCceecccee
Q 031880 71 RPLSYRGADVFLLAFSLISKA-SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----GHPGATPITTSQVW 144 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----~~~~~~~~~~s~~~ 144 (151)
....+.++|.+++|+|+.++. +...+ ..|+..+.. .++|+++|+||+||....+... ...+..++.+|+..
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 344578999999999998765 44455 666665543 4899999999999964332111 23345677777776
Q ss_pred ecc
Q 031880 145 VTN 147 (151)
Q Consensus 145 ~~~ 147 (151)
+.+
T Consensus 160 g~G 162 (352)
T PRK12289 160 GIG 162 (352)
T ss_pred CCC
Confidence 644
No 366
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.87 E-value=0.00037 Score=53.19 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=72.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-----------------CC----CCccceeeee----eEEEEEC-CeEEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTF-----------------PT----DYIPTVFDNF----SANVVVD-GSTVNLGLW 59 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~-----------------~~----~~~~~~~~~~----~~~~~~~-~~~~~~~i~ 59 (151)
.+=|.++|+--+||||||+||...-. ++ ...-|++..+ ...+.++ +..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 35589999999999999999986311 11 1222233332 3455554 678899999
Q ss_pred eCCC--------hh---cccc-ccccc-----------------c--cCCcEEEEEEeCC----ChhHHHHHHHHHHHHH
Q 031880 60 DTAG--------QE---DYNR-LRPLS-----------------Y--RGADVFLLAFSLI----SKASYENVYKKWIPEL 104 (151)
Q Consensus 60 d~~g--------~~---~~~~-~~~~~-----------------~--~~~~~~i~v~d~~----~~~s~~~~~~~~~~~~ 104 (151)
|+.| .. .-+. .++++ + +..=++++--|.+ .++.+..+.+..+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9987 11 1111 11111 1 2233666666654 4677877778888888
Q ss_pred hhhCCCCCEEEEeeCCc
Q 031880 105 RHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 105 ~~~~~~~~iivv~nK~D 121 (151)
+.. +.|.+++.|-.+
T Consensus 177 k~i--gKPFvillNs~~ 191 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTK 191 (492)
T ss_pred HHh--CCCEEEEEeCCC
Confidence 887 889999999876
No 367
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.85 E-value=8.6e-05 Score=40.68 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=31.1
Q ss_pred cCCcEEEEEEeCCChhH--HHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 031880 76 RGADVFLLAFSLISKAS--YENVYKKWIPELRHYAPNVPIVLVGTKLD 121 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D 121 (151)
+=.+++++++|.+.... ...- ..+++.++..+++.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 44789999999985543 4443 577888998889999999999998
No 368
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.84 E-value=1.5e-05 Score=50.53 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.|+|.|.+||||||++++|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 369
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.83 E-value=1.4e-05 Score=54.44 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
++|+|+|+||+||||++.++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999976
No 370
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=1.7e-05 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.+|+|+|++|||||||++++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998854
No 371
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.82 E-value=0.00026 Score=49.93 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=39.2
Q ss_pred EEEEeC-CChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 56 LGLWDT-AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 56 ~~i~d~-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
+.+.|| .|.+-|. +...+++|.+|+|.|.+ ..|+... +...+...+. .=.++.+|.||.|-.
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence 445555 3443332 23467899999999987 5566665 4444443333 226899999999955
No 372
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.79 E-value=2.7e-05 Score=54.21 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=25.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+..+...|++.|++|||||||++.+..
T Consensus 1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 1 MMMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999999988875
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.77 E-value=2.2e-05 Score=53.83 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=37.3
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
++.+...++++++++++|+|+.+... .|...+.....+.|+++|+||+|+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCC
Confidence 56677778899999999999986531 12222222234789999999999864
No 374
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.77 E-value=0.0002 Score=56.21 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=41.1
Q ss_pred EEEEEeCCChh-------------cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 031880 55 NLGLWDTAGQE-------------DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKL 120 (151)
Q Consensus 55 ~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~ 120 (151)
+..+.|.||.- ..-.+...++.+.+++|+|+.-. |.+......-+.+.+.- .+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 35588988821 11234566789999999998633 22222112222222221 367889999999
Q ss_pred ccccc
Q 031880 121 DLRED 125 (151)
Q Consensus 121 Dl~~~ 125 (151)
|+.+.
T Consensus 490 DlAEk 494 (980)
T KOG0447|consen 490 DLAEK 494 (980)
T ss_pred chhhh
Confidence 99764
No 375
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00013 Score=55.50 Aligned_cols=115 Identities=17% Similarity=0.042 Sum_probs=71.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeeeeEEEE-ECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.|...|+-.-|||||+..+.+..-.. ......+.+....+. .+...+.+.++|.||++++-...-.-+..+|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999998653211 111111222221111 2233458899999999988766566677899999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 86 SLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+.++.-..... +. +..+.- ..-...++|.+|+|..++
T Consensus 82 ~~deGl~~qtg-Eh-L~iLdl-lgi~~giivltk~D~~d~ 118 (447)
T COG3276 82 AADEGLMAQTG-EH-LLILDL-LGIKNGIIVLTKADRVDE 118 (447)
T ss_pred eCccCcchhhH-HH-HHHHHh-cCCCceEEEEeccccccH
Confidence 99654333332 11 122222 123346999999998864
No 376
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=2.7e-05 Score=52.68 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.+|+|+|.+|+|||||+..+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 377
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.75 E-value=4.2e-05 Score=59.11 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=38.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCCh
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~ 64 (151)
.+.|.++|-|+|||||+||.|.+.+-..- +.|.+-+.. -++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 58999999999999999999998775432 333333322 2333333 3669999995
No 378
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.73 E-value=4.3e-05 Score=53.22 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|-+++..-|++.|++|||||||++.+.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 6778888999999999999999998875
No 379
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.72 E-value=1.5e-05 Score=52.89 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=43.8
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----CCCCCCceecccee
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----GHPGATPITTSQVW 144 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----~~~~~~~~~~s~~~ 144 (151)
+.+..++++|.+++|+|..++..... ..+...+.. .+.|+++|+||+|+.+...... +..+...+.+|+..
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 34456678999999999976543222 122222222 2689999999999854322111 12233456777766
Q ss_pred ecc
Q 031880 145 VTN 147 (151)
Q Consensus 145 ~~~ 147 (151)
+.+
T Consensus 81 ~~g 83 (156)
T cd01859 81 RLG 83 (156)
T ss_pred ccc
Confidence 543
No 380
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.69 E-value=5e-05 Score=51.43 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=25.2
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
|..+...-+.++|.+|||||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 66677778999999999999999999854
No 381
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.68 E-value=3.4e-05 Score=50.23 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
|+++|++|||||||++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.66 E-value=0.00026 Score=54.45 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=19.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHh
Q 031880 6 FIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~ 27 (151)
.--|+++|.+||||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998776
No 383
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00032 Score=45.06 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
.-.+++.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998754
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=97.66 E-value=6.2e-05 Score=56.48 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=50.7
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc---cc-----CCCCCCCceeccceeec
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ---FS-----SGHPGATPITTSQVWVT 146 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~-----~~~~~~~~~~~s~~~~~ 146 (151)
..++|.+++|++.....++..+ +.|+..+.. .++|.++|+||+|+..... .. ....+..++.+|+..+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4569999999999988899988 888776654 3789999999999965321 11 12334567777876654
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 195 G 195 (347)
T PRK12288 195 G 195 (347)
T ss_pred C
Confidence 3
No 385
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.62 E-value=8.2e-05 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
+..-|+++|++|||||||+++|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999854
No 386
>PRK14530 adenylate kinase; Provisional
Probab=97.61 E-value=6.8e-05 Score=52.51 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+|+|++||||||++++|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 387
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.61 E-value=7.4e-05 Score=51.29 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
..=|+++|++|||||||+++|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999864
No 388
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00015 Score=52.82 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=38.9
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.|.+.|++|.|....+.. ..+-+|.++++.-..-.+..+-+ +.=+-++- =++|.||.|.+.
T Consensus 143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~i-K~GimEia-------Di~vINKaD~~~ 203 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGI-KAGIMEIA-------DIIVINKADRKG 203 (323)
T ss_pred CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHH-Hhhhhhhh-------heeeEeccChhh
Confidence 366778899875544322 23457888888776656666655 33333333 288999999654
No 389
>PRK06217 hypothetical protein; Validated
Probab=97.60 E-value=6.4e-05 Score=51.32 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 390
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.59 E-value=0.00095 Score=43.53 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=61.9
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCC
Q 031880 10 VTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS 89 (151)
Q Consensus 10 ~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (151)
+.-|..|+|||++...+...--... .......... ......+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 3457899999999865553210000 0111000000 0001116788999987432 22235678899999999975
Q ss_pred hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 90 KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
..++... ...++.+.+.....++.+|.|+++-.
T Consensus 78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 5566555 44455555444456788999999743
No 391
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00016 Score=61.42 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=57.6
Q ss_pred EEEECCCCCCHHHHHHHHhcC-CCCCCCccc--ee-eeeeEEEEECCeEEEEEEEeCCChh--------ccccccccc--
Q 031880 9 CVTVGDGAVGKTCMLISYTSN-TFPTDYIPT--VF-DNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLS-- 74 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~-~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~-- 74 (151)
.+|||++|+||||++..--.+ .+....... .. .+......+.+ .-.++||.|.. .-+..|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 479999999999998432211 111110000 00 01111111222 23377887721 112233322
Q ss_pred -------ccCCcEEEEEEeCCChhH----HH-HH---HHHHHHHHhhhC-CCCCEEEEeeCCcccc
Q 031880 75 -------YRGADVFLLAFSLISKAS----YE-NV---YKKWIPELRHYA-PNVPIVLVGTKLDLRE 124 (151)
Q Consensus 75 -------~~~~~~~i~v~d~~~~~s----~~-~~---~~~~~~~~~~~~-~~~~iivv~nK~Dl~~ 124 (151)
.+-.+|||++.|+.+.-+ .. +. ...-+.++.... -..|+.|++||.|+-.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 355899999999864311 11 11 122233333322 4799999999999754
No 392
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00019 Score=53.90 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=72.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------Ccc----cee-------eeeeEEEE----EC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-------------------YIP----TVF-------DNFSANVV----VD 50 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~-------------------~~~----~~~-------~~~~~~~~----~~ 50 (151)
..++++++|...+|||||+--|.++..... .+. ..+ ..|...++ .+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 468999999999999999966665422110 000 000 01111111 01
Q ss_pred CeEEEEEEEeCCChhccccccccccc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 51 GSTVNLGLWDTAGQEDYNRLRPLSYR--GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.....+.++|..|+.+|....-.-+. ..|...++.+....-.+..- +. +..+... ++|.+++.+|.|+.+.
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EH-Lgl~~AL--~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EH-LGLIAAL--NIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HH-HHHHHHh--CCCeEEEEEeeccccc
Confidence 22355789999999998765544443 36888899988776555443 22 2222222 8999999999998764
No 393
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.55 E-value=8.1e-05 Score=49.50 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=34.4
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK 126 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 126 (151)
.++++|.+++|.|+.++..-.. ..+.+.+.....+.|+++|.||+|+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH
Confidence 4678999999999987632211 23333333333468999999999996443
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.55 E-value=8.5e-05 Score=52.63 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
|.-...++|+++|+|||||||++.+|...
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44455688999999999999999998753
No 395
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=0.0001 Score=41.26 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
..++.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987763
No 396
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.54 E-value=9.2e-05 Score=42.42 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|++.|.+|+||||+++++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988864
No 397
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.53 E-value=6.1e-05 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 398
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.53 E-value=0.0001 Score=51.00 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=22.4
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
|+++ .--|+++|++|||||||++.+...
T Consensus 1 ~~~~-g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 1 MMRR-GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 4443 345899999999999999998864
No 399
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.50 E-value=9.8e-05 Score=47.13 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00032 Score=55.18 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.|+|+|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999987764
No 401
>PRK03839 putative kinase; Provisional
Probab=97.49 E-value=9e-05 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
+|+++|.+||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 402
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=9.4e-05 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
-.=+++.|++|+|||||+++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999999999765
No 403
>PRK08233 hypothetical protein; Provisional
Probab=97.47 E-value=0.00014 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+-|++.|.+|||||||+++|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47788999999999999999985
No 404
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00011 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~ 30 (151)
++++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999988643
No 405
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.43 E-value=0.00014 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
||++.|++|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999998885
No 406
>PRK14527 adenylate kinase; Provisional
Probab=97.43 E-value=0.00017 Score=49.58 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+..+..-|+++|++|+||||++.++..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5555667799999999999999998874
No 407
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00021 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~ 31 (151)
.++++|++|||||||++.+-.-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 589999999999999998876543
No 408
>PRK14532 adenylate kinase; Provisional
Probab=97.42 E-value=0.00012 Score=50.01 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999985
No 409
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00017 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF 31 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~ 31 (151)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999987543
No 410
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.40 E-value=0.00014 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888754
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.40 E-value=0.00021 Score=52.29 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=35.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce----e--eeeeEEEEECCeEEEEEEEeCCCh
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV----F--DNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
....++.|+|-|++|||||+|.+.....-.....+. + ......+.+.+.. .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 457899999999999999999777432211111111 1 1112223333332 3679999994
No 412
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.39 E-value=0.00015 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 413
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.39 E-value=0.00021 Score=53.86 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=37.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeeeeEEEEECCeEEEEEEEeCCCh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (151)
..+++.|+|-|++||||+||+|....... ...|.. +.....+..+. .+.+.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheeccC---CceeccCCce
Confidence 56899999999999999999999765522 212222 22233444443 3669999983
No 414
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.39 E-value=0.00017 Score=49.32 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.|+++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 415
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.38 E-value=0.00017 Score=47.04 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|+++|++|+|||||++++...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 416
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.38 E-value=0.00065 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 417
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.38 E-value=0.00013 Score=54.90 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=71.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc----------------eeeee-------eEEEEE----------
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT----------------VFDNF-------SANVVV---------- 49 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~----------------~~~~~-------~~~~~~---------- 49 (151)
.+..+.+...|+-..|||||+-.|..+......-.+ ..-.+ -+.+..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456788999999999999999777654332110000 00000 011111
Q ss_pred ---CCeEEEEEEEeCCChhccccccc--ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 50 ---DGSTVNLGLWDTAGQEDYNRLRP--LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 50 ---~~~~~~~~i~d~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+...-.+.+.||.|++.|-...- .+-...|..+++...++.-+-..- +.+--.+. -+.|++++.+|+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~~a---~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIALA---MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhhhh---hcCCEEEEEEecccCc
Confidence 11124577999999998755332 233678999999988776443222 22222221 2889999999999865
Q ss_pred cc
Q 031880 125 DK 126 (151)
Q Consensus 125 ~~ 126 (151)
..
T Consensus 270 dd 271 (527)
T COG5258 270 DD 271 (527)
T ss_pred HH
Confidence 43
No 418
>PRK01889 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00022 Score=53.78 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEE----EEeCCChhccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLG----LWDTAGQEDYN 68 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~d~~g~~~~~ 68 (151)
+++++|.+|+|||||++.+.+........-........+.+....-..+. ++||||...+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhc
No 419
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.37 E-value=0.00016 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988853
No 420
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.37 E-value=0.00017 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999888653
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.36 E-value=0.0019 Score=38.56 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=45.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc-ccccccCCcEEEEEEeC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFLLAFSL 87 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 87 (151)
+++.|..|+||||++..+...--...+ ....++ .+.++|+++.-..... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999877642110110 111122 5779999876433221 13456678999999986
Q ss_pred CChhHHHHH
Q 031880 88 ISKASYENV 96 (151)
Q Consensus 88 ~~~~s~~~~ 96 (151)
. ..+....
T Consensus 69 ~-~~~~~~~ 76 (99)
T cd01983 69 E-ALAVLGA 76 (99)
T ss_pred c-hhhHHHH
Confidence 5 3444443
No 422
>PRK13949 shikimate kinase; Provisional
Probab=97.35 E-value=0.0002 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 423
>PRK06547 hypothetical protein; Provisional
Probab=97.35 E-value=0.00023 Score=48.28 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
......|+|.|.+|||||||++.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999753
No 424
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.33 E-value=0.00038 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.|+++|++||||||-+-+|..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999998865553
No 425
>PRK00625 shikimate kinase; Provisional
Probab=97.32 E-value=0.0002 Score=48.63 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 426
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.32 E-value=0.0002 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++-+..-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999988754
No 427
>PHA00729 NTP-binding motif containing protein
Probab=97.31 E-value=0.00026 Score=49.85 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.....+|++.|.+|+|||+|+.++...
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999988753
No 428
>PRK14531 adenylate kinase; Provisional
Probab=97.31 E-value=0.00022 Score=48.66 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.+|+++|+|||||||+..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 429
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.31 E-value=0.00022 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
..++++|+|.+|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999888753
No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31 E-value=0.00022 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 431
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00072 Score=50.24 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=69.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc----C------CCCC-----CCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS----N------TFPT-----DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~----~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (151)
.-++|.-||+-.-|||||...+.. . +|.+ +....--.....++.+....-...=.|+||+.+|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 356889999999999999865552 1 1110 000000111233555544444555779999988754
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.--.-....|+.|+|...+|..-=+.- +.++ +.++..=..++|..||.|+.++
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDD 185 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCC
Confidence 333344567999999999886432222 2221 2222222347889999998743
No 432
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.30 E-value=0.00022 Score=48.52 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.|+++|.+||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999883
No 433
>PRK02496 adk adenylate kinase; Provisional
Probab=97.29 E-value=0.00026 Score=48.28 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|+++|++||||||+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998875
No 434
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.29 E-value=0.00024 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.|+|+|..++|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988853
No 435
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.28 E-value=0.00016 Score=54.64 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=42.2
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.++|......+.+.++.+++|+|+.+.. ..|...+.+...+.|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCC
Confidence 5677777777888999999999986543 345555555555789999999999853
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.28 E-value=0.00023 Score=49.09 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|.+.|++|||||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988753
No 437
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.28 E-value=0.0019 Score=39.69 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=48.8
Q ss_pred EEEEC-CCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 9 CVTVG-DGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 9 i~viG-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
|++.| ..|+||||+...+...--... .+.. -+..+. .+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl------~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL------LIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE------EEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56677 569999999876553210000 1111 111111 1678899998864322 22567789999999986
Q ss_pred CChhHHHHHHHHHHH
Q 031880 88 ISKASYENVYKKWIP 102 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (151)
+ ..++..+ ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 6677666 55555
No 438
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.27 E-value=0.00027 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHh
Q 031880 7 IKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~ 27 (151)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999876
No 439
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.27 E-value=0.00033 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
..+|+++|++|+||||+...+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998853
No 440
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.26 E-value=0.00025 Score=48.15 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
|+++|.|||||||++.++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 441
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.26 E-value=0.00022 Score=48.79 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
+|+++|.+||||||++.+|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 442
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.23 E-value=0.0034 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.|++.|.+||||||+++.|..
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999953
No 443
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00033 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=18.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~ 27 (151)
+.--.+++|++|||||||++.|-
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 34456899999999999997665
No 444
>PLN02674 adenylate kinase
Probab=97.21 E-value=0.00035 Score=49.94 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=22.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....+|+++|+|||||+|+..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998886
No 445
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.20 E-value=0.00029 Score=49.17 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+|+|++||||||++.+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 446
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.19 E-value=0.00075 Score=43.17 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
--|++-|+-|+|||||++.++.
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998885
No 447
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.18 E-value=0.001 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
+.-+++++|+++.|||+++++|....
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 44579999999999999999999755
No 448
>PLN02200 adenylate kinase family protein
Probab=97.17 E-value=0.00052 Score=48.82 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
..+.|+++|.|||||||++.++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 449
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.17 E-value=0.00045 Score=48.12 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.....|.++|..|+|||||+++++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988753
No 450
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00027 Score=46.50 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....||++.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4567999999999999999999984
No 451
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=0.00033 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999864
No 452
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.16 E-value=0.00034 Score=49.27 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
|.+.|.+|||||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67899999999999988874
No 453
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.16 E-value=0.0003 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|+++|++||||||+++.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988864
No 454
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.16 E-value=0.00038 Score=48.75 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|+|+|++||||||++.++..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.14 E-value=0.00046 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.++++|++|+|||||++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998864
No 456
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00053 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 031880 9 CVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~~ 30 (151)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 457
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.13 E-value=0.00038 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=16.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.+++.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999997774
No 458
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.12 E-value=0.00054 Score=46.35 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=21.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....-|++.|.+|+||||+++.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3556899999999999999988764
No 459
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.11 E-value=0.00053 Score=46.67 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|+|||||++.++.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999998863
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.11 E-value=0.00044 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|++.|++|+||||+++.++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987754
No 461
>PTZ00301 uridine kinase; Provisional
Probab=97.11 E-value=0.00058 Score=47.79 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=19.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~ 27 (151)
+.+=|.|-|.+|||||||++++.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHH
Confidence 35779999999999999998765
No 462
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.10 E-value=0.00049 Score=45.24 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|++.|.+||||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999998764
No 463
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.10 E-value=0.0019 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHh
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~ 27 (151)
.+.+++++|.-.+|||||+--|.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLT 154 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLT 154 (641)
T ss_pred eeEEEEEEecccCCcceeEeeee
Confidence 46799999999999999984443
No 464
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.09 E-value=0.00067 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...|+++|.+||||||+...|...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999888753
No 465
>PRK10646 ADP-binding protein; Provisional
Probab=97.09 E-value=0.0034 Score=41.69 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-|++-|+-|+|||||++.++..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988853
No 466
>PF13173 AAA_14: AAA domain
Probab=97.08 E-value=0.00053 Score=44.04 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF 31 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~ 31 (151)
--+++.|+++||||||+.++...-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999986543
No 467
>PRK06762 hypothetical protein; Provisional
Probab=97.08 E-value=0.00051 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-|++.|.+||||||+++.|...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999988754
No 468
>PRK14529 adenylate kinase; Provisional
Probab=97.07 E-value=0.0005 Score=48.50 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|+++|++||||||+++++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988874
No 469
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.07 E-value=0.0033 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
..+|+|.|++|||||||++.++..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4689999999999999999999653
No 470
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.07 E-value=0.00048 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
|.|.|++|||||||+++|..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 471
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.07 E-value=0.00059 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 472
>PRK13947 shikimate kinase; Provisional
Probab=97.06 E-value=0.00057 Score=45.92 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|.+||||||+...|..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 473
>PRK13695 putative NTPase; Provisional
Probab=97.06 E-value=0.00053 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|++.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.05 E-value=0.00056 Score=49.16 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999998886
No 475
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.05 E-value=0.00061 Score=51.58 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=51.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeee-eeEEEEECCeEEEEEEEeCCChhccc--ccccccccCCc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN--RLRPLSYRGAD 79 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~--~~~~~~~~~~~ 79 (151)
..+.+-|.+||-|++||||+||.|-...... ..|..+.+ .+..++.- -++-++|+||.-... ......+ .
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---h
Confidence 3467899999999999999999999876532 22222222 11112211 246689999953322 2223333 4
Q ss_pred EEEEEEeCCChhHH
Q 031880 80 VFLLAFSLISKASY 93 (151)
Q Consensus 80 ~~i~v~d~~~~~s~ 93 (151)
+++-|=.+.+++.+
T Consensus 377 GvVRVenv~~pe~y 390 (572)
T KOG2423|consen 377 GVVRVENVKNPEDY 390 (572)
T ss_pred ceeeeeecCCHHHH
Confidence 67778888877654
No 476
>PF13479 AAA_24: AAA domain
Probab=97.05 E-value=0.00054 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHH
Q 031880 5 RFIKCVTVGDGAVGKTCMLISY 26 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l 26 (151)
+.++++|.|++|+|||||+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4689999999999999999888
No 477
>PRK08356 hypothetical protein; Provisional
Probab=97.05 E-value=0.00079 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+.|++.|++||||||++++|..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999964
No 478
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.04 E-value=0.00061 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999988753
No 479
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.04 E-value=0.0028 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
..+|+|.|.+|+|||||++.++..-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999998644
No 480
>PLN02459 probable adenylate kinase
Probab=97.04 E-value=0.00068 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+.++|+++|+||+||+|+..++..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988875
No 481
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.04 E-value=0.00076 Score=47.70 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+..-|++.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
No 482
>PRK14528 adenylate kinase; Provisional
Probab=97.04 E-value=0.00067 Score=46.50 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
.+|+++|+|||||||+++++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.03 E-value=0.00068 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
No 484
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.02 E-value=0.00061 Score=52.14 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=22.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...+|+|+|.+|+|||||+++|...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998854
No 485
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00056 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|++.|-||+||||++++|..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHH
Confidence 4799999999999999999983
No 486
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0042 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-+|+|+|+.|||||||+..|++.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 48999999999999999988865
No 487
>PRK14526 adenylate kinase; Provisional
Probab=97.02 E-value=0.00062 Score=47.68 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|++||||||+++.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988874
No 488
>PLN03025 replication factor C subunit; Provisional
Probab=97.02 E-value=0.003 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.+++.|++|+||||++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 489
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.01 E-value=0.00071 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 490
>PRK04040 adenylate kinase; Provisional
Probab=97.01 E-value=0.00069 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
..|++.|.+|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 57999999999999999988643
No 491
>PRK07429 phosphoribulokinase; Provisional
Probab=97.01 E-value=0.00088 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+..+.+.|.|.|++|||||||++.+..
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 345778999999999999999988874
No 492
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.01 E-value=0.00063 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-|++.|.+||||||+++.|...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999864
No 493
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.01 E-value=0.00073 Score=46.86 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 494
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.00 E-value=0.00072 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||+|-..+=
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 6899999999999999988753
No 495
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.00 E-value=0.00074 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 496
>PF05729 NACHT: NACHT domain
Probab=97.00 E-value=0.00066 Score=44.92 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
++|.|++|+|||+++.++..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999998885
No 497
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.00 E-value=0.00061 Score=44.82 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|.+|+||||++..|..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 498
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00067 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999998886
No 499
>PRK06696 uridine kinase; Validated
Probab=96.99 E-value=0.00088 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....+-|+|-|.+|||||||+++|..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999988774
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00075 Score=47.81 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999975
Done!