Query 031880
Match_columns 151
No_of_seqs 133 out of 1208
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.6E-36 1.6E-40 209.0 10.0 145 3-148 10-163 (216)
2 3t5g_A GTP-binding protein RHE 100.0 3.5E-31 1.2E-35 178.7 15.2 146 1-147 1-155 (181)
3 3reg_A RHO-like small GTPase; 100.0 8.6E-31 2.9E-35 178.9 15.3 145 3-147 20-174 (194)
4 2j0v_A RAC-like GTP-binding pr 100.0 3E-31 1E-35 183.5 13.0 147 1-147 4-166 (212)
5 3q3j_B RHO-related GTP-binding 100.0 4.8E-31 1.6E-35 183.2 13.3 145 3-147 24-188 (214)
6 3c5c_A RAS-like protein 12; GD 100.0 8E-31 2.7E-35 178.5 13.6 144 2-147 17-172 (187)
7 2atx_A Small GTP binding prote 100.0 2E-30 6.8E-35 177.0 14.1 145 3-147 15-179 (194)
8 1m7b_A RND3/RHOE small GTP-bin 100.0 3.8E-30 1.3E-34 174.4 14.4 122 3-124 4-125 (184)
9 3bwd_D RAC-like GTP-binding pr 100.0 1.3E-31 4.6E-36 180.7 7.1 147 1-147 3-167 (182)
10 3oes_A GTPase rhebl1; small GT 100.0 1.9E-30 6.5E-35 178.3 12.5 146 1-147 19-173 (201)
11 1c1y_A RAS-related protein RAP 100.0 3.5E-30 1.2E-34 171.3 13.3 143 4-147 1-153 (167)
12 2iwr_A Centaurin gamma 1; ANK 100.0 2.1E-30 7.1E-35 174.5 12.0 140 1-147 2-155 (178)
13 2q3h_A RAS homolog gene family 100.0 5.9E-30 2E-34 175.5 14.1 145 3-147 17-181 (201)
14 3tw8_B RAS-related protein RAB 100.0 1.3E-29 4.4E-34 170.5 15.5 144 3-147 6-157 (181)
15 1mh1_A RAC1; GTP-binding, GTPa 100.0 8.7E-30 3E-34 172.2 14.7 145 3-147 2-166 (186)
16 3kkq_A RAS-related protein M-R 100.0 5.3E-30 1.8E-34 173.2 13.5 144 3-147 15-168 (183)
17 2j1l_A RHO-related GTP-binding 100.0 3.8E-30 1.3E-34 178.5 12.7 144 4-147 32-195 (214)
18 1u8z_A RAS-related protein RAL 100.0 4.6E-30 1.6E-34 170.5 12.1 143 4-147 2-153 (168)
19 2fv8_A H6, RHO-related GTP-bin 100.0 1.9E-29 6.6E-34 174.0 15.4 124 2-125 21-144 (207)
20 3ihw_A Centg3; RAS, centaurin, 100.0 1.4E-29 4.9E-34 172.0 14.5 139 2-147 16-166 (184)
21 1kao_A RAP2A; GTP-binding prot 100.0 8.6E-30 2.9E-34 169.1 12.8 142 5-147 2-152 (167)
22 1r2q_A RAS-related protein RAB 100.0 1.8E-29 6E-34 168.2 14.3 144 3-147 3-155 (170)
23 2gco_A H9, RHO-related GTP-bin 100.0 2.3E-29 8E-34 172.9 15.2 123 3-125 22-144 (201)
24 4gzl_A RAS-related C3 botulinu 100.0 9.9E-30 3.4E-34 175.3 13.4 146 3-148 27-192 (204)
25 2fn4_A P23, RAS-related protei 100.0 1.3E-29 4.3E-34 170.6 13.4 144 3-147 6-158 (181)
26 1gwn_A RHO-related GTP-binding 100.0 8.9E-30 3E-34 175.8 12.9 121 4-124 26-146 (205)
27 2ew1_A RAS-related protein RAB 100.0 1.3E-29 4.6E-34 174.5 13.7 143 4-147 24-175 (201)
28 2fu5_C RAS-related protein RAB 100.0 6.8E-30 2.3E-34 172.7 11.9 143 4-147 6-157 (183)
29 2bcg_Y Protein YP2, GTP-bindin 100.0 4.2E-29 1.4E-33 172.0 15.9 144 3-147 5-157 (206)
30 1z08_A RAS-related protein RAB 100.0 1.9E-29 6.5E-34 168.3 13.6 144 3-147 3-155 (170)
31 2hup_A RAS-related protein RAB 100.0 8.1E-30 2.8E-34 175.3 12.0 144 3-147 26-179 (201)
32 1z2a_A RAS-related protein RAB 100.0 1.4E-29 4.7E-34 168.5 12.7 145 3-148 2-154 (168)
33 2a9k_A RAS-related protein RAL 100.0 1.4E-29 4.8E-34 171.1 12.9 144 3-147 15-167 (187)
34 1z0j_A RAB-22, RAS-related pro 100.0 4.8E-29 1.6E-33 166.2 15.1 144 3-147 3-155 (170)
35 2bov_A RAla, RAS-related prote 100.0 2E-29 6.7E-34 173.2 13.2 144 3-147 11-163 (206)
36 2efe_B Small GTP-binding prote 100.0 6.7E-29 2.3E-33 167.3 15.4 144 3-147 9-161 (181)
37 2atv_A RERG, RAS-like estrogen 100.0 1E-29 3.5E-34 173.9 11.4 144 1-146 23-175 (196)
38 3cpj_B GTP-binding protein YPT 100.0 5E-29 1.7E-33 173.8 15.0 145 2-147 9-162 (223)
39 2gf9_A RAS-related protein RAB 100.0 6.6E-29 2.3E-33 168.9 15.1 144 3-147 19-171 (189)
40 1zbd_A Rabphilin-3A; G protein 100.0 4E-29 1.4E-33 171.6 14.1 145 3-148 5-158 (203)
41 2yc2_C IFT27, small RAB-relate 100.0 6.4E-30 2.2E-34 175.7 10.0 147 1-148 15-179 (208)
42 3tkl_A RAS-related protein RAB 100.0 6.3E-29 2.1E-33 169.5 14.7 143 4-147 14-165 (196)
43 1z0f_A RAB14, member RAS oncog 100.0 4.4E-29 1.5E-33 167.6 13.7 144 3-147 12-164 (179)
44 2bme_A RAB4A, RAS-related prot 100.0 5.4E-29 1.8E-33 168.5 14.1 143 4-147 8-159 (186)
45 2a5j_A RAS-related protein RAB 100.0 3.7E-29 1.3E-33 170.5 13.3 144 3-147 18-170 (191)
46 1z06_A RAS-related protein RAB 100.0 5.9E-29 2E-33 169.1 14.3 142 3-145 17-169 (189)
47 1ek0_A Protein (GTP-binding pr 100.0 5.7E-29 2E-33 165.7 13.9 142 5-147 2-155 (170)
48 2fg5_A RAB-22B, RAS-related pr 100.0 6.7E-29 2.3E-33 169.4 14.5 143 4-147 21-172 (192)
49 2nzj_A GTP-binding protein REM 100.0 3.5E-29 1.2E-33 167.7 12.8 144 4-148 2-156 (175)
50 3q72_A GTP-binding protein RAD 100.0 4.2E-29 1.4E-33 166.1 13.0 140 6-147 2-150 (166)
51 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.2E-28 4.1E-33 165.5 15.2 144 3-148 4-161 (177)
52 4dsu_A GTPase KRAS, isoform 2B 100.0 7.3E-29 2.5E-33 168.0 13.7 143 4-147 2-152 (189)
53 2g6b_A RAS-related protein RAB 100.0 1.6E-28 5.6E-33 165.2 14.8 144 3-147 7-160 (180)
54 2o52_A RAS-related protein RAB 100.0 4.8E-29 1.6E-33 171.3 12.4 144 3-147 22-174 (200)
55 3q85_A GTP-binding protein REM 100.0 6.2E-29 2.1E-33 165.7 12.6 141 6-147 2-153 (169)
56 2y8e_A RAB-protein 6, GH09086P 100.0 5.2E-29 1.8E-33 167.3 12.2 144 3-147 11-163 (179)
57 2il1_A RAB12; G-protein, GDP, 100.0 7.1E-29 2.4E-33 169.4 12.7 144 3-147 23-176 (192)
58 2erx_A GTP-binding protein DI- 100.0 3.6E-29 1.2E-33 166.9 10.9 142 5-147 2-153 (172)
59 3con_A GTPase NRAS; structural 100.0 2.1E-28 7.2E-33 166.3 14.9 143 3-147 18-169 (190)
60 2g3y_A GTP-binding protein GEM 100.0 4.2E-29 1.4E-33 173.3 11.5 144 4-148 35-190 (211)
61 2hxs_A RAB-26, RAS-related pro 100.0 1.7E-29 5.9E-34 169.8 9.2 144 3-147 3-159 (178)
62 1ky3_A GTP-binding protein YPT 100.0 1.2E-28 4E-33 166.0 13.3 144 3-147 5-164 (182)
63 2oil_A CATX-8, RAS-related pro 100.0 1.5E-28 5E-33 167.6 13.9 144 3-147 22-174 (193)
64 3clv_A RAB5 protein, putative; 100.0 1.9E-28 6.6E-33 167.5 13.7 144 1-147 2-190 (208)
65 3cbq_A GTP-binding protein REM 100.0 4.3E-29 1.5E-33 171.1 10.4 144 4-148 21-175 (195)
66 3gj0_A GTP-binding nuclear pro 100.0 3.5E-29 1.2E-33 174.2 10.0 145 3-148 12-162 (221)
67 2p5s_A RAS and EF-hand domain 100.0 5.5E-29 1.9E-33 170.7 10.5 145 2-147 24-183 (199)
68 3bc1_A RAS-related protein RAB 100.0 2.4E-28 8E-33 166.0 13.6 143 4-147 9-171 (195)
69 1g16_A RAS-related protein SEC 100.0 1.2E-28 4.1E-33 164.2 11.9 141 5-147 2-151 (170)
70 2ce2_X GTPase HRAS; signaling 100.0 1.5E-28 5.3E-33 162.7 12.2 142 5-147 2-151 (166)
71 1vg8_A RAS-related protein RAB 100.0 4.8E-28 1.6E-32 166.5 14.7 143 3-147 5-161 (207)
72 3dz8_A RAS-related protein RAB 100.0 1.2E-29 4.1E-34 172.9 6.6 143 4-147 21-172 (191)
73 2f7s_A C25KG, RAS-related prot 100.0 1.1E-28 3.9E-33 171.0 10.8 144 3-147 22-185 (217)
74 1x3s_A RAS-related protein RAB 100.0 5.1E-28 1.7E-32 164.7 13.4 142 4-147 13-164 (195)
75 3l0i_B RAS-related protein RAB 100.0 3.8E-29 1.3E-33 171.5 7.8 143 4-147 31-182 (199)
76 2cjw_A GTP-binding protein GEM 100.0 6.2E-28 2.1E-32 164.9 13.1 144 4-148 4-159 (192)
77 4djt_A GTP-binding nuclear pro 100.0 4.1E-28 1.4E-32 168.4 11.3 145 3-148 8-162 (218)
78 3t1o_A Gliding protein MGLA; G 100.0 2.5E-28 8.5E-33 166.4 10.0 145 2-148 10-179 (198)
79 3cph_A RAS-related protein SEC 100.0 1.1E-27 3.8E-32 165.3 13.4 143 4-148 18-169 (213)
80 4bas_A ADP-ribosylation factor 100.0 8.7E-28 3E-32 164.1 12.4 141 3-147 14-175 (199)
81 1zd9_A ADP-ribosylation factor 100.0 1.5E-27 5E-32 162.3 11.8 141 3-147 19-171 (188)
82 2gf0_A GTP-binding protein DI- 100.0 5.5E-28 1.9E-32 165.1 9.8 143 3-147 5-157 (199)
83 3th5_A RAS-related C3 botulinu 99.9 8E-30 2.7E-34 175.4 0.0 145 4-148 28-192 (204)
84 1ksh_A ARF-like protein 2; sma 99.9 6.2E-27 2.1E-31 158.5 14.3 139 4-147 16-166 (186)
85 2wkq_A NPH1-1, RAS-related C3 99.9 7.2E-27 2.4E-31 171.0 14.3 143 5-147 154-316 (332)
86 1zj6_A ADP-ribosylation factor 99.9 3.7E-27 1.3E-31 160.0 11.6 139 4-147 14-164 (187)
87 2zej_A Dardarin, leucine-rich 99.9 9.2E-28 3.2E-32 162.8 8.5 140 6-146 2-162 (184)
88 1f6b_A SAR1; gtpases, N-termin 99.9 4.5E-27 1.5E-31 161.3 11.9 116 4-124 23-140 (198)
89 1m2o_B GTP-binding protein SAR 99.9 1.7E-26 5.9E-31 157.4 14.6 140 4-148 21-179 (190)
90 2h57_A ADP-ribosylation factor 99.9 1.6E-26 5.5E-31 157.2 14.2 141 3-147 18-173 (190)
91 2h17_A ADP-ribosylation factor 99.9 5.4E-27 1.8E-31 158.5 11.7 140 3-147 18-169 (181)
92 1r8s_A ADP-ribosylation factor 99.9 1.9E-27 6.5E-32 157.8 9.0 136 7-147 1-148 (164)
93 1upt_A ARL1, ADP-ribosylation 99.9 2.7E-26 9.3E-31 153.0 13.9 139 4-147 5-155 (171)
94 2fh5_B SR-beta, signal recogni 99.9 9.8E-27 3.4E-31 160.9 11.8 122 3-126 4-131 (214)
95 1fzq_A ADP-ribosylation factor 99.9 7.5E-27 2.6E-31 158.0 10.5 140 4-148 14-165 (181)
96 2b6h_A ADP-ribosylation factor 99.9 1.6E-26 5.4E-31 157.8 12.1 140 3-147 26-177 (192)
97 1moz_A ARL1, ADP-ribosylation 99.9 1.8E-26 6E-31 155.7 10.2 139 4-147 16-166 (183)
98 2x77_A ADP-ribosylation factor 99.9 2.3E-26 7.9E-31 156.2 10.6 139 4-147 20-170 (189)
99 3llu_A RAS-related GTP-binding 99.9 8.9E-27 3E-31 159.4 7.8 142 3-147 17-183 (196)
100 2f9l_A RAB11B, member RAS onco 99.9 4.8E-25 1.6E-29 151.1 14.6 142 4-146 3-153 (199)
101 3r7w_A Gtpase1, GTP-binding pr 99.9 2.3E-25 7.8E-30 162.4 10.8 137 5-144 2-165 (307)
102 1oix_A RAS-related protein RAB 99.9 2.7E-24 9.1E-29 146.7 13.7 142 4-146 27-177 (191)
103 3c5h_A Glucocorticoid receptor 99.9 1.2E-25 4.1E-30 160.0 6.7 145 3-148 16-242 (255)
104 3r7w_B Gtpase2, GTP-binding pr 99.9 3.5E-25 1.2E-29 161.5 8.4 132 8-144 1-158 (331)
105 3o47_A ADP-ribosylation factor 99.9 4.5E-25 1.5E-29 162.2 7.9 140 4-147 163-313 (329)
106 2gj8_A MNME, tRNA modification 99.9 9.3E-25 3.2E-29 146.7 8.6 140 5-148 3-153 (172)
107 3lvq_E ARF-GAP with SH3 domain 99.9 9.4E-24 3.2E-28 162.6 14.4 139 4-147 320-470 (497)
108 2lkc_A Translation initiation 99.9 1.2E-23 4.2E-28 141.1 12.8 136 3-147 5-157 (178)
109 2wji_A Ferrous iron transport 99.9 9.5E-24 3.2E-28 140.7 12.0 136 5-148 2-152 (165)
110 3dpu_A RAB family protein; roc 99.9 5.4E-24 1.8E-28 165.3 9.5 145 1-149 36-196 (535)
111 2dyk_A GTP-binding protein; GT 99.9 5.3E-23 1.8E-27 135.8 11.3 135 7-147 2-148 (161)
112 1svi_A GTP-binding protein YSX 99.9 1.3E-23 4.3E-28 143.1 8.4 138 3-147 20-181 (195)
113 2qu8_A Putative nucleolar GTP- 99.9 2.4E-23 8.3E-28 145.5 9.8 142 4-147 27-191 (228)
114 2ged_A SR-beta, signal recogni 99.9 1.6E-23 5.4E-28 142.5 7.0 116 4-128 46-174 (193)
115 1nrj_B SR-beta, signal recogni 99.9 1.5E-23 5.3E-28 145.2 6.8 137 3-148 9-171 (218)
116 2wjg_A FEOB, ferrous iron tran 99.9 5.6E-23 1.9E-27 139.1 8.4 138 2-147 3-155 (188)
117 1wf3_A GTP-binding protein; GT 99.9 6.4E-22 2.2E-26 143.8 11.1 139 4-146 5-158 (301)
118 3a1s_A Iron(II) transport prot 99.9 1.1E-21 3.9E-26 139.7 11.2 137 3-147 2-153 (258)
119 3iev_A GTP-binding protein ERA 99.9 2E-21 6.8E-26 141.6 12.0 142 2-147 6-168 (308)
120 3i8s_A Ferrous iron transport 99.9 7.3E-22 2.5E-26 141.8 7.3 135 5-147 2-155 (274)
121 3gee_A MNME, tRNA modification 99.9 1.1E-21 3.8E-26 150.1 8.3 139 5-147 232-384 (476)
122 3pqc_A Probable GTP-binding pr 99.9 2.9E-21 1E-25 131.0 9.3 137 3-147 20-180 (195)
123 3iby_A Ferrous iron transport 99.9 7.9E-22 2.7E-26 140.3 6.6 133 7-147 2-153 (256)
124 3b1v_A Ferrous iron uptake tra 99.8 2.2E-21 7.6E-26 139.1 8.0 134 5-147 2-150 (272)
125 2cxx_A Probable GTP-binding pr 99.8 4.9E-22 1.7E-26 134.5 4.2 136 7-147 2-170 (190)
126 2hjg_A GTP-binding protein ENG 99.8 2.1E-21 7.1E-26 147.5 6.9 140 4-149 173-337 (436)
127 3def_A T7I23.11 protein; chlor 99.8 1.5E-20 5.1E-25 134.1 11.0 118 4-124 34-165 (262)
128 4dhe_A Probable GTP-binding pr 99.8 2.6E-21 8.8E-26 134.3 4.9 140 4-147 27-197 (223)
129 3k53_A Ferrous iron transport 99.8 1.2E-20 4.2E-25 135.1 8.2 137 4-147 1-152 (271)
130 3qq5_A Small GTP-binding prote 99.8 9.6E-21 3.3E-25 143.0 8.0 139 4-149 32-184 (423)
131 1mky_A Probable GTP-binding pr 99.8 3.5E-20 1.2E-24 140.9 10.0 134 8-147 3-152 (439)
132 1h65_A Chloroplast outer envel 99.8 8.5E-20 2.9E-24 130.7 10.3 119 5-126 38-170 (270)
133 3geh_A MNME, tRNA modification 99.8 7E-20 2.4E-24 139.8 9.8 135 5-147 223-370 (462)
134 2hjg_A GTP-binding protein ENG 99.8 1.2E-20 4.1E-25 143.4 5.4 136 6-147 3-151 (436)
135 4dcu_A GTP-binding protein ENG 99.8 3.4E-20 1.2E-24 141.5 7.1 140 4-149 193-357 (456)
136 3lxx_A GTPase IMAP family memb 99.8 3.2E-19 1.1E-23 125.4 11.4 121 3-128 26-163 (239)
137 2e87_A Hypothetical protein PH 99.8 4.8E-19 1.6E-23 131.4 10.9 141 4-147 165-322 (357)
138 1xzp_A Probable tRNA modificat 99.8 5.8E-20 2E-24 140.8 5.9 134 6-147 243-391 (482)
139 2xtp_A GTPase IMAP family memb 99.8 1.1E-18 3.7E-23 124.1 11.6 117 4-125 20-154 (260)
140 3izy_P Translation initiation 99.8 4.2E-21 1.4E-25 148.5 -1.0 139 5-148 3-155 (537)
141 3lxw_A GTPase IMAP family memb 99.8 7.2E-19 2.5E-23 124.4 9.9 117 3-124 18-153 (247)
142 3sjy_A Translation initiation 99.8 1.6E-18 5.6E-23 130.4 11.8 144 2-147 4-178 (403)
143 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-19 3.9E-24 133.9 5.3 139 8-148 160-317 (342)
144 4dcu_A GTP-binding protein ENG 99.8 9.7E-20 3.3E-24 139.0 5.0 138 4-147 21-171 (456)
145 2xtz_A Guanine nucleotide-bind 99.8 3E-19 1E-23 132.1 7.2 74 52-126 181-266 (354)
146 3ohm_A Guanine nucleotide-bind 99.8 6.6E-19 2.3E-23 128.8 8.8 73 53-126 166-250 (327)
147 2ywe_A GTP-binding protein LEP 99.8 8.9E-19 3E-23 137.1 9.5 143 1-147 1-170 (600)
148 3p26_A Elongation factor 1 alp 99.8 3E-19 1E-23 137.2 6.4 145 4-149 31-226 (483)
149 4fid_A G protein alpha subunit 99.8 5E-19 1.7E-23 130.0 7.1 75 52-127 159-245 (340)
150 2qag_A Septin-2, protein NEDD5 99.8 1.6E-19 5.4E-24 134.2 4.3 141 4-147 35-220 (361)
151 1mky_A Probable GTP-binding pr 99.8 1.5E-18 5.1E-23 131.9 9.6 137 5-147 179-341 (439)
152 1s0u_A EIF-2-gamma, translatio 99.8 1.9E-17 6.4E-22 124.8 15.5 141 1-147 3-184 (408)
153 1zo1_I IF2, translation initia 99.8 2.9E-19 9.9E-24 137.2 4.1 137 4-149 2-155 (501)
154 3cb4_D GTP-binding protein LEP 99.8 1.2E-18 4.1E-23 136.5 7.4 140 4-147 2-168 (599)
155 3t5d_A Septin-7; GTP-binding p 99.8 1.2E-18 4.1E-23 124.9 6.7 141 2-146 4-189 (274)
156 1ega_A Protein (GTP-binding pr 99.8 5.8E-18 2E-22 123.0 10.2 136 4-146 6-160 (301)
157 1jny_A EF-1-alpha, elongation 99.8 1.7E-19 5.9E-24 137.0 2.1 146 1-148 1-200 (435)
158 1azs_C GS-alpha; complex (lyas 99.7 7.1E-18 2.4E-22 126.4 10.7 73 54-127 217-301 (402)
159 1cip_A Protein (guanine nucleo 99.7 2.7E-18 9.4E-23 127.0 8.1 72 53-125 192-275 (353)
160 1wb1_A Translation elongation 99.7 4.7E-18 1.6E-22 130.5 8.9 137 2-147 15-175 (482)
161 3tr5_A RF-3, peptide chain rel 99.7 1.4E-18 4.8E-23 134.5 5.1 116 5-124 12-148 (528)
162 3j2k_7 ERF3, eukaryotic polype 99.7 1.6E-17 5.4E-22 126.3 9.9 141 4-149 15-213 (439)
163 1g7s_A Translation initiation 99.7 1.3E-17 4.6E-22 130.5 9.7 115 3-124 2-136 (594)
164 1f60_A Elongation factor EEF1A 99.7 5.9E-18 2E-22 129.3 6.6 142 1-148 1-199 (458)
165 2aka_B Dynamin-1; fusion prote 99.7 1.2E-17 4E-22 120.7 7.8 141 5-148 25-240 (299)
166 2qtf_A Protein HFLX, GTP-bindi 99.7 1.1E-16 3.7E-21 119.0 12.9 114 8-125 181-307 (364)
167 1zcb_A G alpha I/13; GTP-bindi 99.7 1E-17 3.5E-22 124.3 7.0 72 53-125 200-283 (362)
168 1kk1_A EIF2gamma; initiation o 99.7 1.5E-16 5.3E-21 119.9 13.3 139 3-147 7-186 (410)
169 3izq_1 HBS1P, elongation facto 99.7 3.5E-17 1.2E-21 128.7 10.0 142 4-149 165-360 (611)
170 2c78_A Elongation factor TU-A; 99.7 3.9E-17 1.3E-21 123.0 9.5 140 3-147 8-180 (405)
171 1n0u_A EF-2, elongation factor 99.7 2.4E-17 8.2E-22 133.7 8.6 117 3-123 16-163 (842)
172 2h5e_A Peptide chain release f 99.7 4E-17 1.4E-21 126.5 9.2 118 4-125 11-149 (529)
173 1d2e_A Elongation factor TU (E 99.7 6.3E-17 2.2E-21 121.6 9.5 139 5-147 2-171 (397)
174 1zun_B Sulfate adenylate trans 99.7 1.5E-16 5.1E-21 120.8 11.2 142 4-149 22-212 (434)
175 1r5b_A Eukaryotic peptide chai 99.7 1.6E-17 5.4E-22 127.2 5.4 118 3-124 40-195 (467)
176 1dar_A EF-G, elongation factor 99.7 8.3E-17 2.8E-21 128.2 8.8 115 4-125 10-144 (691)
177 2xex_A Elongation factor G; GT 99.7 9.2E-17 3.2E-21 128.0 8.7 117 3-125 7-142 (693)
178 2qpt_A EH domain-containing pr 99.7 3.2E-17 1.1E-21 127.5 4.7 118 5-127 64-235 (550)
179 2rdo_7 EF-G, elongation factor 99.7 6.3E-16 2.1E-20 123.4 11.9 117 4-125 8-149 (704)
180 2j69_A Bacterial dynamin-like 99.7 4.4E-16 1.5E-20 124.1 10.9 118 5-125 68-245 (695)
181 2elf_A Protein translation elo 99.7 1.2E-16 4.2E-21 118.9 6.3 101 8-122 23-125 (370)
182 3mca_A HBS1, elongation factor 99.6 1.1E-16 3.8E-21 125.5 5.3 139 4-149 175-371 (592)
183 3t34_A Dynamin-related protein 99.6 4.1E-16 1.4E-20 115.7 8.1 136 7-145 35-245 (360)
184 1jwy_B Dynamin A GTPase domain 99.6 2.7E-16 9.2E-21 114.4 6.8 71 54-127 131-215 (315)
185 2qag_C Septin-7; cell cycle, c 99.6 4.4E-16 1.5E-20 117.4 7.9 140 5-147 30-213 (418)
186 3avx_A Elongation factor TS, e 99.6 7.4E-16 2.5E-20 126.9 8.1 140 3-146 293-463 (1289)
187 1wxq_A GTP-binding protein; st 99.6 3.3E-15 1.1E-19 112.2 10.7 84 7-90 1-114 (397)
188 1pui_A ENGB, probable GTP-bind 99.6 1.2E-15 4.1E-20 104.7 7.7 114 4-124 24-151 (210)
189 1u0l_A Probable GTPase ENGC; p 99.6 3.4E-17 1.2E-21 118.9 -1.4 120 21-148 32-160 (301)
190 2dy1_A Elongation factor G; tr 99.6 3.6E-15 1.2E-19 118.4 9.4 116 4-123 7-139 (665)
191 2qnr_A Septin-2, protein NEDD5 99.6 2.8E-16 9.5E-21 114.1 1.9 139 5-148 17-201 (301)
192 3vqt_A RF-3, peptide chain rel 99.5 5.7E-14 1.9E-18 109.3 9.5 116 5-124 30-166 (548)
193 1udx_A The GTP-binding protein 99.5 6E-14 2E-18 105.8 8.9 137 8-147 159-311 (416)
194 2x2e_A Dynamin-1; nitration, h 99.5 4.8E-14 1.7E-18 104.4 7.6 118 5-125 30-212 (353)
195 1jal_A YCHF protein; nucleotid 99.5 1.8E-13 6.1E-18 101.4 10.3 83 7-89 3-108 (363)
196 4fn5_A EF-G 1, elongation fact 99.4 4.7E-13 1.6E-17 107.1 9.5 116 4-123 11-150 (709)
197 4a9a_A Ribosome-interacting GT 99.4 1.5E-12 5E-17 96.9 10.0 114 5-123 71-195 (376)
198 3j25_A Tetracycline resistance 99.3 7.3E-14 2.5E-18 110.5 -0.8 115 6-124 2-133 (638)
199 2ohf_A Protein OLA1, GTP-bindi 99.3 2.1E-12 7.1E-17 96.6 4.8 88 6-93 22-132 (396)
200 2wsm_A Hydrogenase expression/ 99.2 1.8E-12 6.3E-17 89.5 2.4 132 5-147 29-200 (221)
201 2hf9_A Probable hydrogenase ni 99.2 5.1E-14 1.7E-18 97.7 -5.9 36 5-40 37-72 (226)
202 3zvr_A Dynamin-1; hydrolase, D 99.2 8.1E-11 2.8E-15 94.3 11.0 117 6-125 51-232 (772)
203 3p32_A Probable GTPase RV1496/ 99.2 2.5E-12 8.5E-17 95.3 1.6 84 53-147 171-270 (355)
204 2dby_A GTP-binding protein; GD 99.2 5.9E-11 2E-15 88.2 8.3 83 7-89 2-111 (368)
205 1yrb_A ATP(GTP)binding protein 99.1 1.3E-10 4.3E-15 82.2 7.0 70 54-126 109-187 (262)
206 2www_A Methylmalonic aciduria 99.1 5.4E-12 1.9E-16 93.3 -0.7 60 54-124 167-226 (349)
207 2p67_A LAO/AO transport system 99.0 4.2E-11 1.4E-15 88.2 0.8 62 53-125 148-209 (341)
208 2yv5_A YJEQ protein; hydrolase 98.9 6.2E-10 2.1E-14 80.7 3.7 81 64-147 66-155 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.2E-09 1.1E-13 79.5 6.7 84 6-89 20-127 (392)
210 2qag_B Septin-6, protein NEDD5 98.8 7.2E-08 2.5E-12 72.8 11.0 115 5-124 41-190 (427)
211 3sop_A Neuronal-specific septi 98.8 2.5E-08 8.7E-13 71.1 8.2 115 6-124 2-154 (270)
212 3ec1_A YQEH GTPase; atnos1, at 98.7 1.2E-09 4E-14 81.3 -0.8 110 7-125 163-289 (369)
213 3h2y_A GTPase family protein; 98.6 1.9E-09 6.4E-14 80.2 -1.2 112 7-125 161-288 (368)
214 2qm8_A GTPase/ATPase; G protei 98.6 2.4E-09 8.1E-14 78.8 -1.1 60 53-123 147-206 (337)
215 1puj_A YLQF, conserved hypothe 98.6 4.4E-08 1.5E-12 70.3 5.3 58 4-66 118-177 (282)
216 3cnl_A YLQF, putative uncharac 98.6 2.5E-08 8.6E-13 70.9 3.2 57 7-67 100-157 (262)
217 2j37_W Signal recognition part 98.4 1.6E-07 5.5E-12 72.4 4.1 113 5-124 100-254 (504)
218 1f5n_A Interferon-induced guan 98.4 3.4E-07 1.2E-11 71.8 5.9 63 4-66 36-103 (592)
219 1tq4_A IIGP1, interferon-induc 98.3 5.2E-06 1.8E-10 62.5 9.5 109 6-122 69-187 (413)
220 3l82_B F-box only protein 4; T 98.3 2.2E-07 7.7E-12 63.7 1.7 61 63-124 111-177 (227)
221 1bif_A 6-phosphofructo-2-kinas 98.1 9.4E-08 3.2E-12 73.1 -3.2 98 5-107 38-148 (469)
222 2v3c_C SRP54, signal recogniti 98.0 6.6E-06 2.3E-10 62.4 5.1 64 53-123 180-251 (432)
223 3szr_A Interferon-induced GTP- 98.0 9.9E-06 3.4E-10 63.9 5.7 23 8-30 47-69 (608)
224 3h2y_A GTPase family protein; 98.0 2.4E-06 8.4E-11 63.4 2.1 57 63-125 55-111 (368)
225 3l2o_B F-box only protein 4; s 97.9 3.3E-06 1.1E-10 60.6 2.1 63 62-124 195-262 (312)
226 3dm5_A SRP54, signal recogniti 97.8 4.7E-05 1.6E-09 57.8 7.2 114 5-124 99-253 (443)
227 1ye8_A Protein THEP1, hypothet 97.7 2.3E-05 7.9E-10 52.4 3.0 23 7-29 1-23 (178)
228 3asz_A Uridine kinase; cytidin 97.7 2.6E-05 9E-10 53.0 3.1 28 1-28 1-28 (211)
229 1kgd_A CASK, peripheral plasma 97.7 2.7E-05 9.3E-10 51.9 3.1 22 8-29 7-28 (180)
230 2j41_A Guanylate kinase; GMP, 97.6 2.6E-05 9E-10 52.6 3.0 30 1-30 1-30 (207)
231 1y63_A LMAJ004144AAA protein; 97.6 3E-05 1E-09 51.8 3.2 29 1-29 5-33 (184)
232 3ney_A 55 kDa erythrocyte memb 97.6 3.4E-05 1.2E-09 52.4 3.2 27 3-29 16-42 (197)
233 1qf9_A UMP/CMP kinase, protein 97.6 4.9E-05 1.7E-09 50.6 3.7 28 1-28 1-28 (194)
234 4eun_A Thermoresistant glucoki 97.6 3.5E-05 1.2E-09 52.1 2.9 24 5-28 28-51 (200)
235 3tau_A Guanylate kinase, GMP k 97.6 5.1E-05 1.7E-09 51.7 3.6 23 7-29 9-31 (208)
236 3q5d_A Atlastin-1; G protein, 97.6 0.00015 5.2E-09 55.1 6.4 24 5-28 66-89 (447)
237 1lvg_A Guanylate kinase, GMP k 97.6 4.1E-05 1.4E-09 51.8 3.1 21 8-28 6-26 (198)
238 1knq_A Gluconate kinase; ALFA/ 97.6 6.4E-05 2.2E-09 49.5 3.9 25 4-28 6-30 (175)
239 1puj_A YLQF, conserved hypothe 97.5 1.7E-05 5.9E-10 56.8 0.9 82 58-146 3-91 (282)
240 2plr_A DTMP kinase, probable t 97.5 6.4E-05 2.2E-09 50.9 3.6 24 5-28 3-26 (213)
241 1cke_A CK, MSSA, protein (cyti 97.5 5E-05 1.7E-09 52.1 3.1 27 1-28 1-27 (227)
242 1via_A Shikimate kinase; struc 97.5 4.9E-05 1.7E-09 50.2 2.8 21 8-28 6-26 (175)
243 1zp6_A Hypothetical protein AT 97.5 6.5E-05 2.2E-09 50.1 3.3 23 7-29 10-32 (191)
244 3tr0_A Guanylate kinase, GMP k 97.5 6.1E-05 2.1E-09 50.8 3.0 22 8-29 9-30 (205)
245 3a00_A Guanylate kinase, GMP k 97.5 6.1E-05 2.1E-09 50.4 3.0 20 9-28 4-23 (186)
246 1nn5_A Similar to deoxythymidy 97.5 5.8E-05 2E-09 51.3 2.8 28 1-28 4-31 (215)
247 4gp7_A Metallophosphoesterase; 97.5 6.4E-05 2.2E-09 49.7 2.8 19 8-26 11-29 (171)
248 1t9h_A YLOQ, probable GTPase E 97.5 4.1E-05 1.4E-09 55.5 2.0 22 8-29 175-196 (307)
249 1ex7_A Guanylate kinase; subst 97.5 8E-05 2.7E-09 50.1 3.2 21 9-29 4-24 (186)
250 1s96_A Guanylate kinase, GMP k 97.4 8.1E-05 2.8E-09 51.3 3.0 22 8-29 18-39 (219)
251 1z6g_A Guanylate kinase; struc 97.4 8.1E-05 2.8E-09 51.2 3.0 22 8-29 25-46 (218)
252 3ec1_A YQEH GTPase; atnos1, at 97.4 2.1E-05 7E-10 58.5 -0.0 57 63-125 57-113 (369)
253 1znw_A Guanylate kinase, GMP k 97.4 8.3E-05 2.9E-09 50.5 3.0 22 8-29 22-43 (207)
254 2qor_A Guanylate kinase; phosp 97.4 8.7E-05 3E-09 50.3 3.0 23 7-29 13-35 (204)
255 3cm0_A Adenylate kinase; ATP-b 97.4 0.00013 4.6E-09 48.3 3.9 24 5-28 3-26 (186)
256 3lw7_A Adenylate kinase relate 97.4 9E-05 3.1E-09 48.4 3.0 20 7-26 2-21 (179)
257 3c8u_A Fructokinase; YP_612366 97.4 0.00011 3.6E-09 50.0 3.4 24 5-28 21-44 (208)
258 1tev_A UMP-CMP kinase; ploop, 97.4 0.00012 4.2E-09 48.7 3.6 24 5-28 2-25 (196)
259 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.8E-09 48.0 3.2 21 8-28 3-23 (173)
260 1kht_A Adenylate kinase; phosp 97.4 0.0001 3.5E-09 49.0 3.0 23 6-28 3-25 (192)
261 1ly1_A Polynucleotide kinase; 97.4 0.00014 4.7E-09 47.9 3.6 22 7-28 3-24 (181)
262 3fb4_A Adenylate kinase; psych 97.4 9.6E-05 3.3E-09 50.4 2.9 22 7-28 1-22 (216)
263 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.6E-09 48.3 3.0 23 7-29 5-27 (173)
264 3vaa_A Shikimate kinase, SK; s 97.4 0.00011 3.6E-09 49.7 2.9 22 7-28 26-47 (199)
265 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.9E-09 50.0 3.0 22 7-28 1-22 (216)
266 3uie_A Adenylyl-sulfate kinase 97.3 9.9E-05 3.4E-09 49.9 2.7 24 5-28 24-47 (200)
267 1ukz_A Uridylate kinase; trans 97.3 0.00019 6.3E-09 48.4 4.0 26 3-28 12-37 (203)
268 3sr0_A Adenylate kinase; phosp 97.3 0.00012 4E-09 50.1 2.9 22 7-28 1-22 (206)
269 1zd8_A GTP:AMP phosphotransfer 97.3 0.00011 3.6E-09 50.7 2.7 23 6-28 7-29 (227)
270 2bdt_A BH3686; alpha-beta prot 97.3 0.00014 4.7E-09 48.6 3.0 21 8-28 4-24 (189)
271 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.9E-09 47.9 3.1 22 7-28 4-25 (178)
272 2vli_A Antibiotic resistance p 97.3 7.9E-05 2.7E-09 49.3 1.7 26 3-28 2-27 (183)
273 3iij_A Coilin-interacting nucl 97.3 0.00014 4.8E-09 48.1 2.9 24 5-28 10-33 (180)
274 2bbw_A Adenylate kinase 4, AK4 97.3 0.00016 5.6E-09 50.3 3.4 22 6-27 27-48 (246)
275 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5.1E-09 49.0 3.0 22 7-28 19-40 (202)
276 3trf_A Shikimate kinase, SK; a 97.3 0.00015 5.2E-09 48.1 3.0 23 6-28 5-27 (185)
277 1nks_A Adenylate kinase; therm 97.3 0.00016 5.4E-09 48.1 3.1 22 7-28 2-23 (194)
278 2jaq_A Deoxyguanosine kinase; 97.3 0.00015 5.1E-09 48.7 2.9 21 8-28 2-22 (205)
279 1htw_A HI0065; nucleotide-bind 97.3 0.00017 5.7E-09 47.2 3.0 23 8-30 35-57 (158)
280 3tif_A Uncharacterized ABC tra 97.3 0.00016 5.4E-09 50.4 3.1 22 8-29 33-54 (235)
281 1uj2_A Uridine-cytidine kinase 97.3 0.00021 7.1E-09 50.1 3.6 27 2-28 18-44 (252)
282 3tlx_A Adenylate kinase 2; str 97.3 0.00024 8.3E-09 49.6 3.9 24 5-28 28-51 (243)
283 2cdn_A Adenylate kinase; phosp 97.2 0.00021 7E-09 48.2 3.4 25 4-28 18-42 (201)
284 2v54_A DTMP kinase, thymidylat 97.2 0.0002 6.8E-09 48.2 3.2 24 6-29 4-27 (204)
285 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.4E-09 47.5 3.3 23 6-28 5-27 (193)
286 2rcn_A Probable GTPase ENGC; Y 97.2 0.00019 6.6E-09 53.1 3.2 23 8-30 217-239 (358)
287 1e4v_A Adenylate kinase; trans 97.2 0.00016 5.6E-09 49.3 2.5 21 8-28 2-22 (214)
288 3ec2_A DNA replication protein 97.2 0.00019 6.5E-09 47.5 2.8 22 7-28 39-60 (180)
289 1uf9_A TT1252 protein; P-loop, 97.2 0.00023 8E-09 47.7 3.2 26 4-29 6-31 (203)
290 2if2_A Dephospho-COA kinase; a 97.2 0.00017 5.9E-09 48.6 2.6 22 7-28 2-23 (204)
291 1gvn_B Zeta; postsegregational 97.2 0.00029 9.8E-09 50.5 3.8 25 4-28 31-55 (287)
292 1jjv_A Dephospho-COA kinase; P 97.2 0.00028 9.6E-09 47.7 3.6 22 7-28 3-24 (206)
293 3be4_A Adenylate kinase; malar 97.2 0.00019 6.4E-09 49.2 2.6 25 4-28 3-27 (217)
294 1aky_A Adenylate kinase; ATP:A 97.2 0.00022 7.4E-09 48.8 3.0 23 6-28 4-26 (220)
295 2i3b_A HCR-ntpase, human cance 97.2 0.00021 7.1E-09 48.2 2.7 21 8-28 3-23 (189)
296 2pcj_A ABC transporter, lipopr 97.2 0.0002 6.9E-09 49.5 2.7 22 8-29 32-53 (224)
297 1np6_A Molybdopterin-guanine d 97.2 0.00025 8.6E-09 47.2 3.0 23 7-29 7-29 (174)
298 2pt5_A Shikimate kinase, SK; a 97.2 0.00024 8.4E-09 46.3 3.0 21 8-28 2-22 (168)
299 2onk_A Molybdate/tungstate ABC 97.2 0.00026 8.8E-09 49.5 3.2 22 8-29 26-47 (240)
300 1b0u_A Histidine permease; ABC 97.1 0.00025 8.6E-09 50.2 3.1 22 8-29 34-55 (262)
301 3gfo_A Cobalt import ATP-bindi 97.1 0.00025 8.7E-09 50.5 3.1 22 8-29 36-57 (275)
302 2cbz_A Multidrug resistance-as 97.1 0.00029 9.9E-09 49.1 3.3 22 8-29 33-54 (237)
303 1zak_A Adenylate kinase; ATP:A 97.1 0.00016 5.6E-09 49.5 2.0 24 5-28 4-27 (222)
304 3d3q_A TRNA delta(2)-isopenten 97.1 0.00031 1.1E-08 51.5 3.6 28 1-28 1-29 (340)
305 2eyu_A Twitching motility prot 97.1 0.00025 8.6E-09 50.2 3.0 21 8-28 27-47 (261)
306 2ehv_A Hypothetical protein PH 97.1 0.00028 9.7E-09 48.8 3.2 20 8-27 32-51 (251)
307 1vht_A Dephospho-COA kinase; s 97.1 0.00036 1.2E-08 47.6 3.6 23 6-28 4-26 (218)
308 1sgw_A Putative ABC transporte 97.1 0.00029 9.9E-09 48.4 3.1 22 8-29 37-58 (214)
309 1mv5_A LMRA, multidrug resista 97.1 0.00032 1.1E-08 49.0 3.3 22 8-29 30-51 (243)
310 4g1u_C Hemin import ATP-bindin 97.1 0.00028 9.7E-09 50.0 3.1 22 8-29 39-60 (266)
311 3crm_A TRNA delta(2)-isopenten 97.1 0.00037 1.3E-08 50.8 3.7 27 1-28 1-27 (323)
312 2ff7_A Alpha-hemolysin translo 97.1 0.00032 1.1E-08 49.2 3.3 22 8-29 37-58 (247)
313 2qt1_A Nicotinamide riboside k 97.1 0.00038 1.3E-08 47.1 3.6 25 5-29 20-44 (207)
314 2wwf_A Thymidilate kinase, put 97.1 0.0003 1E-08 47.6 3.1 24 5-28 9-32 (212)
315 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00037 1.3E-08 49.1 3.6 23 6-28 4-26 (260)
316 1g6h_A High-affinity branched- 97.1 0.00029 1E-08 49.7 3.1 22 8-29 35-56 (257)
317 4e22_A Cytidylate kinase; P-lo 97.1 0.00034 1.2E-08 49.1 3.4 22 6-27 27-48 (252)
318 1jbk_A CLPB protein; beta barr 97.1 0.00036 1.2E-08 45.9 3.3 23 7-29 44-66 (195)
319 2v9p_A Replication protein E1; 97.1 0.00032 1.1E-08 50.7 3.2 21 8-28 128-148 (305)
320 2olj_A Amino acid ABC transpor 97.1 0.00032 1.1E-08 49.7 3.1 22 8-29 52-73 (263)
321 2yvu_A Probable adenylyl-sulfa 97.1 0.00046 1.6E-08 45.9 3.8 25 4-28 11-35 (186)
322 2jeo_A Uridine-cytidine kinase 97.1 0.00039 1.3E-08 48.5 3.5 24 5-28 24-47 (245)
323 2pze_A Cystic fibrosis transme 97.1 0.00037 1.3E-08 48.3 3.3 22 8-29 36-57 (229)
324 2xb4_A Adenylate kinase; ATP-b 97.1 0.00033 1.1E-08 48.2 3.1 21 8-28 2-22 (223)
325 3aez_A Pantothenate kinase; tr 97.1 0.00045 1.5E-08 50.1 3.9 25 4-28 88-112 (312)
326 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00035 1.2E-08 49.1 3.2 22 8-29 31-52 (250)
327 2yv5_A YJEQ protein; hydrolase 97.1 0.00033 1.1E-08 50.5 3.1 20 8-27 167-186 (302)
328 1ji0_A ABC transporter; ATP bi 97.1 0.00033 1.1E-08 48.9 3.1 22 8-29 34-55 (240)
329 1u0l_A Probable GTPase ENGC; p 97.1 0.00031 1.1E-08 50.6 2.9 23 8-30 171-193 (301)
330 1odf_A YGR205W, hypothetical 3 97.1 0.00048 1.6E-08 49.5 3.9 24 4-27 29-52 (290)
331 1rz3_A Hypothetical protein rb 97.1 0.00044 1.5E-08 46.7 3.5 25 4-28 20-44 (201)
332 1vpl_A ABC transporter, ATP-bi 97.1 0.00035 1.2E-08 49.3 3.1 22 8-29 43-64 (256)
333 3lnc_A Guanylate kinase, GMP k 97.1 0.00019 6.4E-09 49.5 1.7 22 8-29 29-51 (231)
334 4a74_A DNA repair and recombin 97.1 0.00029 1E-08 48.1 2.6 21 8-28 27-47 (231)
335 2qi9_C Vitamin B12 import ATP- 97.1 0.00036 1.2E-08 49.1 3.1 22 8-29 28-49 (249)
336 2c95_A Adenylate kinase 1; tra 97.1 0.00031 1.1E-08 46.9 2.7 23 6-28 9-31 (196)
337 2ghi_A Transport protein; mult 97.1 0.00039 1.3E-08 49.2 3.3 22 8-29 48-69 (260)
338 2ze6_A Isopentenyl transferase 97.1 0.00035 1.2E-08 49.1 3.1 21 8-28 3-23 (253)
339 2zu0_C Probable ATP-dependent 97.0 0.00038 1.3E-08 49.4 3.2 22 8-29 48-69 (267)
340 1lw7_A Transcriptional regulat 97.0 0.00031 1.1E-08 51.9 2.8 24 6-29 170-193 (365)
341 2p5t_B PEZT; postsegregational 97.0 0.00032 1.1E-08 49.2 2.7 24 5-28 31-54 (253)
342 1ak2_A Adenylate kinase isoenz 97.0 0.00038 1.3E-08 48.1 3.1 23 6-28 16-38 (233)
343 2ixe_A Antigen peptide transpo 97.0 0.00041 1.4E-08 49.3 3.3 22 8-29 47-68 (271)
344 2ihy_A ABC transporter, ATP-bi 97.0 0.00043 1.5E-08 49.5 3.3 22 8-29 49-70 (279)
345 3tqc_A Pantothenate kinase; bi 97.0 0.00053 1.8E-08 50.0 3.9 25 4-28 90-114 (321)
346 2f1r_A Molybdopterin-guanine d 97.0 0.00017 5.8E-09 47.9 1.1 22 8-29 4-25 (171)
347 2pbr_A DTMP kinase, thymidylat 97.0 0.0004 1.4E-08 46.2 2.9 21 8-28 2-22 (195)
348 3r20_A Cytidylate kinase; stru 97.0 0.00041 1.4E-08 48.3 3.0 24 5-28 8-31 (233)
349 3b85_A Phosphate starvation-in 97.0 0.00033 1.1E-08 47.9 2.5 22 8-29 24-45 (208)
350 2nq2_C Hypothetical ABC transp 97.0 0.00042 1.4E-08 48.8 3.0 22 8-29 33-54 (253)
351 2yz2_A Putative ABC transporte 97.0 0.00043 1.5E-08 49.1 3.1 22 8-29 35-56 (266)
352 2x8a_A Nuclear valosin-contain 97.0 0.00043 1.5E-08 49.2 3.0 21 9-29 47-67 (274)
353 1ixz_A ATP-dependent metallopr 97.0 0.00046 1.6E-08 48.2 3.1 22 8-29 51-72 (254)
354 1e6c_A Shikimate kinase; phosp 97.0 0.0005 1.7E-08 44.9 3.1 21 8-28 4-24 (173)
355 2pjz_A Hypothetical protein ST 97.0 0.00054 1.9E-08 48.5 3.3 23 8-30 32-54 (263)
356 3umf_A Adenylate kinase; rossm 96.9 0.0005 1.7E-08 47.3 3.0 21 8-28 31-51 (217)
357 2z0h_A DTMP kinase, thymidylat 96.9 0.0005 1.7E-08 45.8 3.0 21 8-28 2-22 (197)
358 2bwj_A Adenylate kinase 5; pho 96.9 0.0005 1.7E-08 46.0 2.9 22 7-28 13-34 (199)
359 2iyv_A Shikimate kinase, SK; t 96.9 0.00056 1.9E-08 45.3 3.1 21 8-28 4-24 (184)
360 1zuh_A Shikimate kinase; alpha 96.9 0.00065 2.2E-08 44.3 3.3 23 6-28 7-29 (168)
361 2f6r_A COA synthase, bifunctio 96.9 0.00066 2.3E-08 48.4 3.6 25 4-28 73-97 (281)
362 1xjc_A MOBB protein homolog; s 96.9 0.00059 2E-08 45.2 3.1 22 7-28 5-26 (169)
363 2p65_A Hypothetical protein PF 96.9 0.00044 1.5E-08 45.4 2.5 23 6-28 43-65 (187)
364 3nh6_A ATP-binding cassette SU 96.9 0.00038 1.3E-08 50.4 2.2 22 8-29 82-103 (306)
365 2pez_A Bifunctional 3'-phospho 96.9 0.0008 2.7E-08 44.4 3.5 24 5-28 4-27 (179)
366 1rj9_A FTSY, signal recognitio 96.9 0.00057 2E-08 49.4 3.0 22 7-28 103-124 (304)
367 1gtv_A TMK, thymidylate kinase 96.9 0.00019 6.7E-09 48.6 0.5 21 8-28 2-22 (214)
368 2kjq_A DNAA-related protein; s 96.9 0.00039 1.3E-08 45.0 1.9 22 8-29 38-59 (149)
369 3jvv_A Twitching mobility prot 96.9 0.00058 2E-08 50.5 3.0 21 8-28 125-145 (356)
370 3bos_A Putative DNA replicatio 96.9 0.00073 2.5E-08 46.2 3.3 23 6-28 52-74 (242)
371 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00057 1.9E-08 50.6 2.8 23 8-30 32-54 (359)
372 4dzz_A Plasmid partitioning pr 96.8 0.00024 8.3E-09 47.8 0.7 66 53-123 75-143 (206)
373 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00073 2.5E-08 46.1 3.1 21 8-28 25-45 (235)
374 1z47_A CYSA, putative ABC-tran 96.8 0.0007 2.4E-08 50.0 3.2 22 8-29 43-64 (355)
375 1sq5_A Pantothenate kinase; P- 96.8 0.00078 2.7E-08 48.7 3.4 24 5-28 79-102 (308)
376 3tui_C Methionine import ATP-b 96.8 0.00073 2.5E-08 50.1 3.2 22 8-29 56-77 (366)
377 1lv7_A FTSH; alpha/beta domain 96.8 0.00079 2.7E-08 47.0 3.3 23 7-29 46-68 (257)
378 1iy2_A ATP-dependent metallopr 96.8 0.00071 2.4E-08 47.9 3.1 22 8-29 75-96 (278)
379 2bbs_A Cystic fibrosis transme 96.8 0.00067 2.3E-08 48.7 2.9 22 8-29 66-87 (290)
380 3b9q_A Chloroplast SRP recepto 96.8 0.0007 2.4E-08 48.9 3.0 23 6-28 100-122 (302)
381 2yyz_A Sugar ABC transporter, 96.8 0.00074 2.5E-08 50.0 3.2 22 8-29 31-52 (359)
382 2it1_A 362AA long hypothetical 96.8 0.00076 2.6E-08 50.0 3.2 22 8-29 31-52 (362)
383 3rlf_A Maltose/maltodextrin im 96.8 0.00076 2.6E-08 50.3 3.2 23 8-30 31-53 (381)
384 1in4_A RUVB, holliday junction 96.8 0.00072 2.5E-08 49.3 3.0 22 8-29 53-74 (334)
385 1t9h_A YLOQ, probable GTPase E 96.8 0.0021 7.3E-08 46.5 5.4 52 71-125 80-132 (307)
386 2ewv_A Twitching motility prot 96.8 0.00077 2.6E-08 50.1 3.2 22 7-28 137-158 (372)
387 2w58_A DNAI, primosome compone 96.8 0.00093 3.2E-08 44.9 3.3 22 7-28 55-76 (202)
388 1v43_A Sugar-binding transport 96.8 0.00083 2.9E-08 49.9 3.2 22 8-29 39-60 (372)
389 1g29_1 MALK, maltose transport 96.8 0.00082 2.8E-08 50.0 3.2 23 8-30 31-53 (372)
390 2gza_A Type IV secretion syste 96.8 0.00068 2.3E-08 50.1 2.7 22 8-29 177-198 (361)
391 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00073 2.5E-08 49.4 2.8 23 8-30 173-195 (330)
392 2vp4_A Deoxynucleoside kinase; 96.7 0.001 3.4E-08 45.9 3.3 25 5-29 19-43 (230)
393 1a7j_A Phosphoribulokinase; tr 96.7 0.00045 1.5E-08 49.6 1.4 27 1-28 1-27 (290)
394 4eaq_A DTMP kinase, thymidylat 96.7 0.0014 4.7E-08 45.4 3.9 24 5-28 25-48 (229)
395 2cvh_A DNA repair and recombin 96.7 0.001 3.6E-08 45.0 3.1 21 8-28 22-42 (220)
396 1m7g_A Adenylylsulfate kinase; 96.7 0.0013 4.6E-08 44.6 3.6 23 6-28 25-47 (211)
397 3nwj_A ATSK2; P loop, shikimat 96.7 0.00086 2.9E-08 47.1 2.7 22 7-28 49-70 (250)
398 3e70_C DPA, signal recognition 96.7 0.0014 4.8E-08 47.9 3.8 24 5-28 128-151 (328)
399 1ltq_A Polynucleotide kinase; 96.7 0.0013 4.4E-08 47.0 3.6 22 7-28 3-24 (301)
400 1njg_A DNA polymerase III subu 96.7 0.001 3.5E-08 45.2 3.0 21 8-28 47-67 (250)
401 2chg_A Replication factor C sm 96.7 0.0011 3.7E-08 44.6 3.0 21 8-28 40-60 (226)
402 3d31_A Sulfate/molybdate ABC t 96.7 0.0007 2.4E-08 49.9 2.1 22 8-29 28-49 (348)
403 3ake_A Cytidylate kinase; CMP 96.7 0.0015 5.1E-08 43.9 3.7 21 8-28 4-24 (208)
404 1n0w_A DNA repair protein RAD5 96.7 0.0012 4E-08 45.5 3.2 22 8-29 26-47 (243)
405 1p9r_A General secretion pathw 96.7 0.001 3.4E-08 50.2 3.0 22 8-29 169-190 (418)
406 3n70_A Transport activator; si 96.7 0.0012 4.3E-08 42.1 3.0 25 6-30 24-48 (145)
407 3h4m_A Proteasome-activating n 96.6 0.0012 4.1E-08 46.7 3.2 24 6-29 51-74 (285)
408 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0013 4.6E-08 45.8 3.3 22 7-28 40-61 (262)
409 3kta_A Chromosome segregation 96.6 0.0012 3.9E-08 43.7 2.8 21 8-28 28-48 (182)
410 3gd7_A Fusion complex of cysti 96.6 0.001 3.5E-08 49.7 2.8 22 8-29 49-70 (390)
411 2og2_A Putative signal recogni 96.6 0.0012 4E-08 48.9 3.0 23 6-28 157-179 (359)
412 3b9p_A CG5977-PA, isoform A; A 96.6 0.0013 4.4E-08 46.9 3.2 24 6-29 54-77 (297)
413 2oap_1 GSPE-2, type II secreti 96.6 0.0011 3.8E-08 51.3 2.9 23 8-30 262-284 (511)
414 1cr0_A DNA primase/helicase; R 96.6 0.0011 3.7E-08 47.4 2.6 21 8-28 37-57 (296)
415 2grj_A Dephospho-COA kinase; T 96.6 0.0017 5.9E-08 43.7 3.5 25 5-29 11-35 (192)
416 2yhs_A FTSY, cell division pro 96.6 0.0013 4.5E-08 50.6 3.1 23 6-28 293-315 (503)
417 1oxx_K GLCV, glucose, ABC tran 96.5 0.00069 2.4E-08 50.0 1.4 23 8-30 33-55 (353)
418 1tue_A Replication protein E1; 96.5 0.0012 4.2E-08 45.1 2.5 22 7-28 59-80 (212)
419 1d2n_A N-ethylmaleimide-sensit 96.5 0.0023 7.9E-08 45.1 4.0 26 4-29 62-87 (272)
420 3t15_A Ribulose bisphosphate c 96.5 0.0013 4.5E-08 47.1 2.7 24 6-29 36-59 (293)
421 3ld9_A DTMP kinase, thymidylat 96.5 0.0021 7.2E-08 44.4 3.6 28 1-28 16-43 (223)
422 3cf0_A Transitional endoplasmi 96.5 0.0017 5.7E-08 46.7 3.2 23 7-29 50-72 (301)
423 3syl_A Protein CBBX; photosynt 96.5 0.0015 5.1E-08 46.7 2.9 23 6-28 67-89 (309)
424 2qmh_A HPR kinase/phosphorylas 96.5 0.0018 6E-08 44.1 3.0 23 7-29 35-57 (205)
425 3zvl_A Bifunctional polynucleo 96.5 0.0017 5.7E-08 48.9 3.2 23 6-28 258-280 (416)
426 1l8q_A Chromosomal replication 96.5 0.0016 5.5E-08 47.0 3.0 22 7-28 38-59 (324)
427 2h92_A Cytidylate kinase; ross 96.5 0.0013 4.5E-08 44.7 2.3 23 6-28 3-25 (219)
428 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.1E-08 44.8 3.0 24 5-28 15-38 (236)
429 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.8E-08 50.1 2.6 22 8-29 140-161 (460)
430 1c9k_A COBU, adenosylcobinamid 96.5 0.0019 6.4E-08 43.2 2.9 21 9-29 2-22 (180)
431 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0028 9.4E-08 46.8 4.0 25 4-28 22-46 (359)
432 1svm_A Large T antigen; AAA+ f 96.4 0.0018 6.1E-08 48.2 3.0 22 7-28 170-191 (377)
433 1nij_A Hypothetical protein YJ 96.4 0.0012 4.1E-08 47.9 2.1 24 6-29 4-27 (318)
434 1ofh_A ATP-dependent HSL prote 96.4 0.0019 6.5E-08 46.0 3.1 23 6-28 50-72 (310)
435 3exa_A TRNA delta(2)-isopenten 96.4 0.0025 8.5E-08 46.3 3.6 24 6-29 3-26 (322)
436 2obl_A ESCN; ATPase, hydrolase 96.4 0.0018 6.2E-08 47.6 2.9 23 8-30 73-95 (347)
437 3foz_A TRNA delta(2)-isopenten 96.4 0.0027 9.4E-08 46.0 3.6 23 7-29 11-33 (316)
438 2dr3_A UPF0273 protein PH0284; 96.4 0.002 6.7E-08 44.4 2.8 21 8-28 25-45 (247)
439 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0026 8.9E-08 41.0 3.2 19 9-27 26-44 (149)
440 1p5z_B DCK, deoxycytidine kina 96.4 0.0017 5.7E-08 45.7 2.5 25 5-29 23-47 (263)
441 2qby_A CDC6 homolog 1, cell di 96.4 0.0018 6.1E-08 47.4 2.7 22 7-28 46-67 (386)
442 4fcw_A Chaperone protein CLPB; 96.4 0.0024 8.1E-08 45.7 3.3 23 7-29 48-70 (311)
443 1nlf_A Regulatory protein REPA 96.4 0.0019 6.6E-08 45.7 2.8 21 8-28 32-52 (279)
444 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0024 8.2E-08 46.4 3.2 23 7-29 46-68 (322)
445 3eie_A Vacuolar protein sortin 96.3 0.0025 8.4E-08 46.2 3.2 23 7-29 52-74 (322)
446 3a8t_A Adenylate isopentenyltr 96.3 0.0026 9E-08 46.6 3.3 23 7-29 41-63 (339)
447 4b4t_K 26S protease regulatory 96.3 0.0023 7.9E-08 48.4 3.0 22 7-28 207-228 (428)
448 3b60_A Lipid A export ATP-bind 96.3 0.0022 7.4E-08 50.4 3.0 22 8-29 371-392 (582)
449 1fnn_A CDC6P, cell division co 96.3 0.0026 9E-08 46.7 3.3 22 8-29 46-67 (389)
450 1sxj_E Activator 1 40 kDa subu 96.3 0.0019 6.4E-08 47.1 2.5 20 9-28 39-58 (354)
451 4b4t_M 26S protease regulatory 96.3 0.0027 9.2E-08 48.1 3.3 24 6-29 215-238 (434)
452 1sxj_C Activator 1 40 kDa subu 96.3 0.0023 8E-08 46.6 3.0 22 8-29 48-69 (340)
453 3gmt_A Adenylate kinase; ssgci 96.3 0.0026 8.8E-08 44.2 2.9 24 5-28 7-30 (230)
454 3b5x_A Lipid A export ATP-bind 96.3 0.0026 8.8E-08 49.9 3.3 22 8-29 371-392 (582)
455 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0028 9.6E-08 49.3 3.5 22 8-29 49-70 (538)
456 2dpy_A FLII, flagellum-specifi 96.3 0.0024 8E-08 48.5 2.9 23 8-30 159-181 (438)
457 3euj_A Chromosome partition pr 96.2 0.0026 8.8E-08 48.9 3.1 21 8-28 31-51 (483)
458 3co5_A Putative two-component 96.2 0.0013 4.5E-08 41.9 1.2 23 7-29 28-50 (143)
459 4b4t_L 26S protease subunit RP 96.2 0.0027 9.4E-08 48.1 3.1 24 6-29 215-238 (437)
460 1sxj_D Activator 1 41 kDa subu 96.2 0.0029 9.9E-08 45.9 3.0 22 8-29 60-81 (353)
461 3uk6_A RUVB-like 2; hexameric 96.2 0.0028 9.5E-08 46.5 2.9 22 8-29 72-93 (368)
462 2r62_A Cell division protease 96.2 0.0012 4.2E-08 46.3 0.9 21 8-28 46-66 (268)
463 3tqf_A HPR(Ser) kinase; transf 96.2 0.0035 1.2E-07 41.7 3.0 23 7-29 17-39 (181)
464 3pxg_A Negative regulator of g 96.2 0.0029 1E-07 48.3 3.0 23 6-28 201-223 (468)
465 2qen_A Walker-type ATPase; unk 96.2 0.0032 1.1E-07 45.5 3.1 22 8-29 33-54 (350)
466 2v1u_A Cell division control p 96.1 0.0026 8.8E-08 46.6 2.6 23 6-28 44-66 (387)
467 3u61_B DNA polymerase accessor 96.1 0.0096 3.3E-07 42.9 5.6 21 9-29 51-71 (324)
468 1vma_A Cell division protein F 96.1 0.0034 1.1E-07 45.4 3.1 23 6-28 104-126 (306)
469 4b4t_J 26S protease regulatory 96.1 0.0033 1.1E-07 47.2 3.0 24 6-29 182-205 (405)
470 2qgz_A Helicase loader, putati 96.1 0.0037 1.3E-07 45.2 3.3 23 6-28 152-174 (308)
471 2yl4_A ATP-binding cassette SU 96.1 0.0023 8E-08 50.3 2.4 22 8-29 372-393 (595)
472 3pfi_A Holliday junction ATP-d 96.1 0.0033 1.1E-07 45.6 3.0 23 7-29 56-78 (338)
473 2ocp_A DGK, deoxyguanosine kin 96.1 0.0038 1.3E-07 43.2 3.2 23 6-28 2-24 (241)
474 2qp9_X Vacuolar protein sortin 96.1 0.0033 1.1E-07 46.2 3.0 22 8-29 86-107 (355)
475 3ozx_A RNAse L inhibitor; ATP 96.1 0.0033 1.1E-07 48.9 3.1 22 8-29 27-48 (538)
476 2bjv_A PSP operon transcriptio 96.1 0.0036 1.2E-07 43.9 3.0 24 7-30 30-53 (265)
477 1um8_A ATP-dependent CLP prote 96.1 0.0034 1.2E-07 46.3 3.1 24 6-29 72-95 (376)
478 3qf4_B Uncharacterized ABC tra 96.1 0.0026 8.9E-08 50.1 2.5 22 8-29 383-404 (598)
479 2px0_A Flagellar biosynthesis 96.1 0.0034 1.1E-07 45.2 2.9 21 7-27 106-126 (296)
480 1pzn_A RAD51, DNA repair and r 96.1 0.0031 1.1E-07 46.4 2.8 22 8-29 133-154 (349)
481 3d8b_A Fidgetin-like protein 1 96.1 0.004 1.4E-07 45.8 3.3 24 6-29 117-140 (357)
482 4a82_A Cystic fibrosis transme 96.1 0.0023 7.8E-08 50.2 2.0 22 8-29 369-390 (578)
483 3j16_B RLI1P; ribosome recycli 96.1 0.0037 1.3E-07 49.4 3.2 22 8-29 105-126 (608)
484 3hws_A ATP-dependent CLP prote 96.1 0.0037 1.3E-07 46.0 3.1 24 6-29 51-74 (363)
485 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0039 1.3E-07 46.1 3.2 19 9-27 26-44 (365)
486 2fna_A Conserved hypothetical 96.0 0.0033 1.1E-07 45.4 2.6 22 8-29 32-53 (357)
487 3qf4_A ABC transporter, ATP-bi 96.0 0.003 1E-07 49.6 2.5 22 8-29 371-392 (587)
488 4edh_A DTMP kinase, thymidylat 96.0 0.0054 1.9E-07 41.9 3.5 25 4-28 4-28 (213)
489 3ozx_A RNAse L inhibitor; ATP 96.0 0.004 1.4E-07 48.5 3.1 22 8-29 296-317 (538)
490 2qby_B CDC6 homolog 3, cell di 96.0 0.0036 1.2E-07 45.9 2.7 22 7-28 46-67 (384)
491 3bk7_A ABC transporter ATP-bin 96.0 0.0046 1.6E-07 48.9 3.3 22 8-29 119-140 (607)
492 3m6a_A ATP-dependent protease 96.0 0.004 1.4E-07 48.5 3.0 21 8-28 110-130 (543)
493 3lv8_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 43.5 2.5 25 4-28 25-49 (236)
494 2z4s_A Chromosomal replication 95.9 0.0042 1.5E-07 47.1 3.0 22 7-28 131-152 (440)
495 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0053 1.8E-07 47.8 3.5 22 8-29 314-335 (538)
496 2r44_A Uncharacterized protein 95.9 0.0031 1.1E-07 45.7 2.0 21 8-28 48-68 (331)
497 3pvs_A Replication-associated 95.9 0.0051 1.8E-07 46.8 3.3 22 8-29 52-73 (447)
498 3vfd_A Spastin; ATPase, microt 95.9 0.0053 1.8E-07 45.6 3.3 23 7-29 149-171 (389)
499 1g41_A Heat shock protein HSLU 95.9 0.0042 1.4E-07 47.2 2.7 23 6-28 50-72 (444)
500 4b4t_I 26S protease regulatory 95.9 0.0048 1.6E-07 46.7 3.0 24 6-29 216-239 (437)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.6e-36 Score=209.01 Aligned_cols=145 Identities=30% Similarity=0.478 Sum_probs=118.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+++.+||+++|+++||||||++||+.+.|...+.+|.+..+ .+.+..++..+.++||||+|+++|+.++..++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45789999999999999999999999999999999987554 56777889999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++|||+++++||..+ ..|+..+.+.. +++|++|||||+|+.+.|+++. ...++.++++|++++.|.
T Consensus 90 ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCH
Confidence 999999999999999 88988887654 6899999999999998888764 244677999999988764
No 2
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=3.5e-31 Score=178.74 Aligned_cols=146 Identities=27% Similarity=0.395 Sum_probs=126.2
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
|...+.+||+++|++|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 77788999999999999999999999998898888899888887788889999999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 9999999999999999 88998887664 4799999999999977666542 23456788999887654
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=8.6e-31 Score=178.91 Aligned_cols=145 Identities=46% Similarity=0.816 Sum_probs=125.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999999999888889998888888888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc--ccccC-------CCCCCC-ceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED--KQFSS-------GHPGAT-PITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~-------~~~~~~-~~~~s~~~~~~ 147 (151)
+|||++++.+|..+...|+..+.+..++.|+++|+||+|+.+. +.+.. ...++. ++++|+.++.+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 9999999999999768899999988889999999999999753 33322 123444 88999887765
No 4
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=3e-31 Score=183.48 Aligned_cols=147 Identities=79% Similarity=1.246 Sum_probs=125.2
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
|+..+.+||+++|+++||||||+++|..+.+...+.++....+...+.+++..+.+.+|||||++++...+..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 67778999999999999999999999999988888888888777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc--------cC-------CCCC-CCceecccee
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF--------SS-------GHPG-ATPITTSQVW 144 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--------~~-------~~~~-~~~~~~s~~~ 144 (151)
+++|||++++.+|..+...|+..+.+..++.|++||+||+|+.+.+.+ .. ...+ ..++++|+..
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 999999999999999845899999988889999999999999776542 11 1123 3678888887
Q ss_pred ecc
Q 031880 145 VTN 147 (151)
Q Consensus 145 ~~~ 147 (151)
+.+
T Consensus 164 g~g 166 (212)
T 2j0v_A 164 QQN 166 (212)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=4.8e-31 Score=183.23 Aligned_cols=145 Identities=35% Similarity=0.626 Sum_probs=123.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+..+||+++|+++||||||+++|+.+.+...+.++....+...+.+++..+.+.+|||+|++++...+..+++++|++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 35679999999999999999999999999988899998888777888888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCCC-Cceeccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPGA-TPITTSQ 142 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~~-~~~~~s~ 142 (151)
+|||++++.+|..+...|+..+.+..++.|+++||||+|+.+. +.+.. ...++ .++++|+
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999999449999999998889999999999999763 33332 23345 7889998
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
..+.+
T Consensus 184 ~~g~g 188 (214)
T 3q3j_B 184 FTSEK 188 (214)
T ss_dssp TTCHH
T ss_pred CCCcc
Confidence 87654
No 6
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=8e-31 Score=178.45 Aligned_cols=144 Identities=23% Similarity=0.377 Sum_probs=118.7
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.+++.+||+++|++|||||||+++|+++.+...+.++....+...+.+++..+.+++|||+|++++... ..+++.++++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 356789999999999999999999999999888889988887777788899999999999999988875 5688999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccccccccC-------CCCCCCceeccc-eeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQ-VWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~-~~~~~ 147 (151)
++|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+ ..+.+
T Consensus 96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 999999999999999 88999887764 6899999999999987666542 223567889998 66543
No 7
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-30 Score=176.98 Aligned_cols=145 Identities=52% Similarity=0.978 Sum_probs=123.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|+++||||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34679999999999999999999999998888888888777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc------------cccC-------CCCCC-Cceeccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK------------QFSS-------GHPGA-TPITTSQ 142 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------------~~~~-------~~~~~-~~~~~s~ 142 (151)
+|||++++.+|..+...|+..+.+..++.|+++|+||+|+.+.. .+.. ...+. .++++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 99999999999998448999999888899999999999997642 2221 11233 6789998
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
..+.+
T Consensus 175 ~~g~g 179 (194)
T 2atx_A 175 LTQKG 179 (194)
T ss_dssp TTCTT
T ss_pred CCCCC
Confidence 87655
No 8
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=3.8e-30 Score=174.44 Aligned_cols=122 Identities=39% Similarity=0.782 Sum_probs=110.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+...+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+++++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46789999999999999999999999998888888888777777778888899999999999999999989999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+|||++++.+|..+...|+..+.+..++.|+++||||+|+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 999999999999986789999988878999999999999975
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.3e-31 Score=180.67 Aligned_cols=147 Identities=82% Similarity=1.281 Sum_probs=107.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
|+.++.+||+++|+++||||||+++|..+.+...+.++....+...+..++..+.+++|||||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67778999999999999999999999999888888888876666555667778889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc----------cC-------CCCC-CCceeccc
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF----------SS-------GHPG-ATPITTSQ 142 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----------~~-------~~~~-~~~~~~s~ 142 (151)
+++|||++++.++..+...|+..+.+..++.|+++|+||+|+.+.+.. .. ...+ ..++++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 999999999999999944899999988789999999999999766542 11 1223 36788998
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
..+.+
T Consensus 163 ~~~~g 167 (182)
T 3bwd_D 163 KSQEN 167 (182)
T ss_dssp TTCTT
T ss_pred CCCCC
Confidence 87765
No 10
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=178.25 Aligned_cols=146 Identities=30% Similarity=0.421 Sum_probs=119.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
|...+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+|||||++++...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 55678999999999999999999999999998888888888776677777788999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 9999999999999999 89999887763 4789999999999987666543 23456788898887654
No 11
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=3.5e-30 Score=171.28 Aligned_cols=143 Identities=26% Similarity=0.475 Sum_probs=122.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
++.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++++...+..+++.++++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999888888888887777777788888999999999999999888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccccccC--------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+. ..+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 81 VYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153 (167)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC
Confidence 9999999999998 7888887765 35899999999999987655432 12366788999887655
No 12
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=2.1e-30 Score=174.50 Aligned_cols=140 Identities=19% Similarity=0.297 Sum_probs=115.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
|..++.+||+++|+++||||||+++|.++.+.. +.++....+...+.+++..+.+++|||+|+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 778899999999999999999999999998876 77888777777888889899999999999876 356788999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCccc--ccccccC--------CCCCCCceeccceeec
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLR--EDKQFSS--------GHPGATPITTSQVWVT 146 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~--~~~~~~~--------~~~~~~~~~~s~~~~~ 146 (151)
+++|||++++.+|..+ ..|+..+.... ++.|+++||||+|+. ..+.+.. ...+..++++|+..+.
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999 78766655432 578999999999994 3344332 1235678999988765
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 155 ~ 155 (178)
T 2iwr_A 155 N 155 (178)
T ss_dssp T
T ss_pred C
Confidence 4
No 13
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=175.53 Aligned_cols=145 Identities=54% Similarity=0.913 Sum_probs=115.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
....+||+++|++|||||||+++|+++.+...+.++....+...+..++..+.+.+|||||++++...+..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45789999999999999999999999888888888888877778888898899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCCC-Cceeccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPGA-TPITTSQ 142 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~~-~~~~~s~ 142 (151)
+|||++++.+|..+...|+..+.+..++.|+++|+||+|+.+. +.+.. ...+. .++++|+
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 9999999999999844899999988889999999999999763 22221 11233 6788988
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
..+.+
T Consensus 177 ~~g~g 181 (201)
T 2q3h_A 177 LTQKN 181 (201)
T ss_dssp TTCTT
T ss_pred CCCCC
Confidence 87755
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=170.54 Aligned_cols=144 Identities=33% Similarity=0.580 Sum_probs=121.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
....+||+++|++|||||||+++|.+..+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999988777777776554 45777888889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+..++.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999999999 889999998888999999999999987665542 22356788898887654
No 15
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=8.7e-30 Score=172.18 Aligned_cols=145 Identities=65% Similarity=1.070 Sum_probs=123.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.++.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 46789999999999999999999999998888888888777777888999999999999999999999889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc------------cccC-------CCCCC-Cceeccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK------------QFSS-------GHPGA-TPITTSQ 142 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------------~~~~-------~~~~~-~~~~~s~ 142 (151)
+|||++++.++..+...|+..+.+..++.|+++|+||+|+.+.. .+.. ...+. .++++|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999998448999998887899999999999997542 2211 12233 6788988
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
..+.+
T Consensus 162 ~~g~g 166 (186)
T 1mh1_A 162 LTQRG 166 (186)
T ss_dssp TTCTT
T ss_pred CCccC
Confidence 87754
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=5.3e-30 Score=173.20 Aligned_cols=144 Identities=31% Similarity=0.466 Sum_probs=124.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|++|||||||+++|..+.+...+.++....+......++..+.+.+|||||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999999998888888888888778888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccccccC-------CCCCCCceeccce-eecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQV-WVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~-~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+. ..+.|+++|+||+|+.+.+.+.. ...++.++++|+. .+.+
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 95 IVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 99999999999999 8888888664 25899999999999987666543 2334778999988 6544
No 17
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=178.54 Aligned_cols=144 Identities=44% Similarity=0.846 Sum_probs=103.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|+++.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.++++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 36799999999999999999999999888888888877777788888999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc------------ccC-------CCCCC-Cceeccce
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ------------FSS-------GHPGA-TPITTSQV 143 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~~-------~~~~~-~~~~~s~~ 143 (151)
|||++++.+|..+...|+..+.+..++.|+++|+||+|+.+.+. +.. ...+. .++++|+.
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999984589999998888999999999999976531 211 12233 68899988
Q ss_pred eecc
Q 031880 144 WVTN 147 (151)
Q Consensus 144 ~~~~ 147 (151)
.+.+
T Consensus 192 ~g~g 195 (214)
T 2j1l_A 192 LHDN 195 (214)
T ss_dssp TTBS
T ss_pred CCCC
Confidence 7654
No 18
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=4.6e-30 Score=170.53 Aligned_cols=143 Identities=33% Similarity=0.542 Sum_probs=120.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+..+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.++++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 46799999999999999999999999888888888887777777888888999999999999999888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+... +.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T 1u8z_A 82 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153 (168)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 9999999999999 889888877653 899999999999987655432 12345678888887654
No 19
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-29 Score=174.05 Aligned_cols=124 Identities=56% Similarity=1.017 Sum_probs=106.7
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+.+..+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 45678999999999999999999999998888888888777766777888889999999999999999988999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
++|||++++.++..+...|+..+.+..++.|+++|+||+|+.+.
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 99999999999999867899999888789999999999999765
No 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1.4e-29 Score=171.97 Aligned_cols=139 Identities=24% Similarity=0.348 Sum_probs=116.8
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..++.+||+++|++|||||||+++|+.+.+...+.++ ...+...+.+++..+.+++|||+|+++++ +++.++++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 4678999999999999999999999999988877777 45566788889999999999999998876 77889999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccc--ccccccC--------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLR--EDKQFSS--------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~--~~~~~~~--------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.+|..+ ..|+..+.+.. .+.|+++||||+|+. ..+.+.. ....+.++++|+..+.+
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999 88999998764 579999999999994 3343332 22347789999987754
No 21
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=8.6e-30 Score=169.09 Aligned_cols=142 Identities=32% Similarity=0.534 Sum_probs=121.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999998888888888777777888889889999999999999998888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 85 FSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
||++++.++..+ ..|...+.+.. .+.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcC
Confidence 999999999998 78888776654 4899999999999977655432 12356788888887654
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.8e-29 Score=168.16 Aligned_cols=144 Identities=31% Similarity=0.547 Sum_probs=121.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+++.+||+++|+++||||||+++|+++.+...+.++....+ ...+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 46789999999999999999999999888777777765554 45667788889999999999999998888899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999998 88988887764 6899999999999976555432 23456688898887754
No 23
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.3e-29 Score=172.90 Aligned_cols=123 Identities=59% Similarity=1.040 Sum_probs=112.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+..+||+++|+++||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35689999999999999999999999998888888887777777788888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+|||++++.++..+...|...+.+..++.|+++|+||+|+.+.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 9999999999999867899999888789999999999999764
No 24
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=9.9e-30 Score=175.28 Aligned_cols=146 Identities=64% Similarity=1.061 Sum_probs=122.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.++.+||+++|++|||||||+++|+.+.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35679999999999999999999999999888888888888888888899999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc------------ccC-------CCCC-CCceeccc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ------------FSS-------GHPG-ATPITTSQ 142 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~~-------~~~~-~~~~~~s~ 142 (151)
+|||++++.++..+...|+..+.+..++.|+++|+||+|+.+.+. +.. ...+ ..++++|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 999999999999995589999998888999999999999976543 111 1122 34788998
Q ss_pred eeeccC
Q 031880 143 VWVTND 148 (151)
Q Consensus 143 ~~~~~~ 148 (151)
.++.+.
T Consensus 187 ~~g~gi 192 (204)
T 4gzl_A 187 LTQRGL 192 (204)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 877653
No 25
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.3e-29 Score=170.59 Aligned_cols=144 Identities=31% Similarity=0.511 Sum_probs=123.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.++.+||+++|++|||||||+++|++..+...+.++....+...+..++..+.+.+|||||++++...+..+++.+++++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45689999999999999999999999998888888888887777888888899999999999999988888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHY-A-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+. . .+.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999999999 7888877443 2 5899999999999987665532 23456788898887654
No 26
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=8.9e-30 Score=175.85 Aligned_cols=121 Identities=40% Similarity=0.789 Sum_probs=110.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
...+||+++|+++||||||+++|.++.+...+.++....+...+.+++..+.+.+|||+|++++...+..+++.++++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999998888888887777777778888999999999999999999899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
|||++++.+|..+...|+..+.+..++.|+++||||+|+.+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999999999986789999988888999999999999975
No 27
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=174.50 Aligned_cols=143 Identities=32% Similarity=0.578 Sum_probs=121.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+.+||+++|++|||||||+++|+.+.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+++++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988877777775544 557778888899999999999999988889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+++.. ...++.++++|+..+.+
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999998 89999988775 5789999999999986655532 23356788999887765
No 28
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=6.8e-30 Score=172.67 Aligned_cols=143 Identities=30% Similarity=0.598 Sum_probs=93.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+||+++|+++||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999888777777776554 456777888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999999 78999888764 5799999999999987655432 12356789999887765
No 29
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=4.2e-29 Score=171.97 Aligned_cols=144 Identities=33% Similarity=0.628 Sum_probs=122.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.++.+||+++|++|||||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 34679999999999999999999999998877777776555 45677788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157 (206)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999999 88999888765 5799999999999987655432 23456788999887654
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.9e-29 Score=168.28 Aligned_cols=144 Identities=33% Similarity=0.614 Sum_probs=114.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.+||+++|++|||||||+++|++..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988777777776555 35666788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 155 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999999999999 88988887654 5789999999999987655432 22356788888887654
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=8.1e-30 Score=175.35 Aligned_cols=144 Identities=33% Similarity=0.558 Sum_probs=114.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.++.+||+++|+++||||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999988777777775544 55677888889999999999999999888999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCC-Cceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGA-TPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~-~~~~~s~~~~~~ 147 (151)
|+|||++++.+|..+ ..|+..+.+.. .+.|++||+||+|+.+.+.+.. ...++ .++++|+..+.+
T Consensus 106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 999999999999999 88999988776 6899999999999987655432 23345 678999887654
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1.4e-29 Score=168.50 Aligned_cols=145 Identities=33% Similarity=0.511 Sum_probs=121.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.++.+||+++|++|||||||+++|.++.+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999988877777775444 55667788889999999999999999988999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 999999999999998 889988877667899999999999987655432 123457888888876653
No 33
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1.4e-29 Score=171.15 Aligned_cols=144 Identities=33% Similarity=0.540 Sum_probs=123.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+..+||+++|++|||||||+++|+...+...+.++....+...+..++..+.+.+||+||++++...+..+++.+++++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 34679999999999999999999999988888888888887777888888899999999999999988888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+... +.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 95 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 99999999999999 888888877653 899999999999987655432 23456788898887754
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=4.8e-29 Score=166.19 Aligned_cols=144 Identities=26% Similarity=0.522 Sum_probs=122.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.++.+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||.+++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45789999999999999999999999988877777776555 45667788889999999999999999988899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 999999999999998 88999988764 6889999999999987655432 23456788898887654
No 35
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=173.20 Aligned_cols=144 Identities=33% Similarity=0.540 Sum_probs=124.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+..+||+++|++|||||||+++|.+..+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+++++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 35679999999999999999999999988888888888887778888888899999999999999988888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+... +.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 91 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 99999999999999 889998888764 899999999999987655432 12345688898887654
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=6.7e-29 Score=167.27 Aligned_cols=144 Identities=33% Similarity=0.569 Sum_probs=120.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
++..+||+++|+++||||||+++|+...+...+.++....+ ...+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988777767765544 45666788889999999999999999998999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 999999999999998 88998888765 5899999999999976655432 23456788999887754
No 37
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-29 Score=173.91 Aligned_cols=144 Identities=26% Similarity=0.403 Sum_probs=120.2
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
|...+.+||+++|+++||||||+++|+++.+...+.++....+...+.+++..+.+.+||+||.++ ...+..+++.+++
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 455678999999999999999999999999888888888887777788888899999999999988 6667778899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeec
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVT 146 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~ 146 (151)
+++|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence 9999999999999999 88888887653 5899999999999987655532 1235678899988765
No 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5e-29 Score=173.81 Aligned_cols=145 Identities=32% Similarity=0.521 Sum_probs=114.7
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
.....+||+++|+++||||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+++
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 345679999999999999999999999988777777776554 4567778888999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|+|||++++.+|..+ ..|+..+.+.. .+.|++||+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 89 vilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 162 (223)
T 3cpj_B 89 ALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162 (223)
T ss_dssp EEEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999998 88999988765 5789999999999987655432 23456788899887754
No 39
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=6.6e-29 Score=168.88 Aligned_cols=144 Identities=30% Similarity=0.576 Sum_probs=121.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.+..+||+++|+++||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45689999999999999999999999988777777776554 34666788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999999998 88999888765 5899999999999987655432 12346788998887654
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=4e-29 Score=171.59 Aligned_cols=145 Identities=29% Similarity=0.561 Sum_probs=122.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.+..+||+++|+++||||||+++|++..+...+.++....+ ...+..++..+.+.+|||||.+++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999988777777776554 45666788889999999999999999888999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINV 158 (203)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 999999999999998 88999988765 5899999999999987655432 123457888988877653
No 41
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=6.4e-30 Score=175.74 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=89.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCcccee-eeeeEEEEECCe--EEEEEEEeCCChhcccccccccc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYIPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSY 75 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~ 75 (151)
|+....+||+++|++|||||||+++|++. .+...+.++.+ +.+...+.+++. .+.+.+|||||++++...+..++
T Consensus 15 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 94 (208)
T 2yc2_C 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW 94 (208)
T ss_dssp CSEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence 45567899999999999999999999998 77777777776 444667777776 89999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCC----CCCEEEEeeCCcccc-cccccC-------CCCCCCceeccce
Q 031880 76 RGADVFLLAFSLISKASYENVYKKWIPELRHYAP----NVPIVLVGTKLDLRE-DKQFSS-------GHPGATPITTSQV 143 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~Dl~~-~~~~~~-------~~~~~~~~~~s~~ 143 (151)
+.+|++++|||++++.+|..+ ..|+..+.+... +.|+++|+||+|+.+ .+.+.. ...+..++++|+.
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 173 (208)
T 2yc2_C 95 NGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSAN 173 (208)
T ss_dssp CCCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred hhCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccC
Confidence 999999999999999999999 899999988754 899999999999987 555432 2345678999988
Q ss_pred e-eccC
Q 031880 144 W-VTND 148 (151)
Q Consensus 144 ~-~~~~ 148 (151)
. +.+.
T Consensus 174 ~~~~gi 179 (208)
T 2yc2_C 174 PPGKDA 179 (208)
T ss_dssp ------
T ss_pred CCCcCH
Confidence 8 6553
No 42
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=169.46 Aligned_cols=143 Identities=35% Similarity=0.654 Sum_probs=122.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
...+||+++|+++||||||+++|++..+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 3578999999999999999999999988887777776554 457778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 99999999999999 88999988775 5789999999999987665542 23456789999887654
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=4.4e-29 Score=167.64 Aligned_cols=144 Identities=29% Similarity=0.562 Sum_probs=121.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.+||+++|+++||||||+++|++..+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45689999999999999999999999988777777776554 45666788889999999999999998888899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999998 88999888765 6899999999999976655432 23456788999887765
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=5.4e-29 Score=168.51 Aligned_cols=143 Identities=31% Similarity=0.534 Sum_probs=121.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
++.+||+++|++|||||||+++|++..+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988877777776544 556777888899999999999999998889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 99999999999999 88998887764 6899999999999976655432 23456788999887654
No 45
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=3.7e-29 Score=170.49 Aligned_cols=144 Identities=29% Similarity=0.554 Sum_probs=117.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.+||+++|+++||||||+++|+++.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.++++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 35689999999999999999999999988777777765544 45677788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 98 i~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 98 LLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999 88998888764 5899999999999977655432 12356688898887654
No 46
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=5.9e-29 Score=169.15 Aligned_cols=142 Identities=30% Similarity=0.555 Sum_probs=119.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhccc-ccccccccCCcE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADV 80 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~ 80 (151)
.++.+||+++|+++||||||+++|+.+.+...+.++....+ ...+.+++..+.+.+|||||++++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 45679999999999999999999999988777777775544 4567778888999999999999988 778888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceee
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWV 145 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~ 145 (151)
+++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+++.. ...+..++++|+..+
T Consensus 97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 9999999999999998 88999888764 5899999999999977655432 234567899998876
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-29 Score=165.67 Aligned_cols=142 Identities=32% Similarity=0.563 Sum_probs=119.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+.+||+++|++|||||||+++|+++.+...+.++....+ ...+.+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 579999999999999999999999988877777776555 4566778888999999999999999988889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccc---ccccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRED---KQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~---~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+. +++.. ...+..++++|+..+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999998 88998887765 68999999999999765 33322 12356678888887654
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.7e-29 Score=169.42 Aligned_cols=143 Identities=28% Similarity=0.532 Sum_probs=121.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
++.+||+++|+++||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+++++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 5689999999999999999999999988777777776655 445667778899999999999999999989999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 99999999999999 89999988775 5799999999999976555432 23456788999887654
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=167.69 Aligned_cols=144 Identities=24% Similarity=0.306 Sum_probs=107.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc--ccccccccccCCcEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~~ 81 (151)
++.+||+++|++|||||||+++|.+..+...+.+...+.+...+.+++..+.+.+|||||++. +......+++.++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999887755444333344556777888889999999999987 555666788999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
++|||++++.+|..+ ..|...+.+.. .+.|+++|+||+|+.+.+++..+ ..++.++++|+..+.+.
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 999999999999999 88888887753 58999999999999876655421 23456889998877653
No 50
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=4.2e-29 Score=166.11 Aligned_cols=140 Identities=24% Similarity=0.311 Sum_probs=97.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 85 (151)
.+||+++|++|||||||+++|.+..+. ...++....+...+.+++..+.+.+||++|++++...+..+++.++++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999976543 3345555666667788999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 86 SLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|++++.+|..+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN 150 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC
Confidence 99999999999 88888887653 5899999999999987665543 23456789999988765
No 51
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.2e-28 Score=165.47 Aligned_cols=144 Identities=36% Similarity=0.623 Sum_probs=117.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.+||+++|++|||||||+++|+++.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35789999999999999999999999988777777776554 55777888889999999999999999988999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccccccccC--------CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~~~~ 148 (151)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+ +++.. ...+..++++|+..+.+.
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999998 88988887653 5789999999999962 22221 145677899998877653
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=7.3e-29 Score=168.02 Aligned_cols=143 Identities=33% Similarity=0.505 Sum_probs=119.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988888888887778888889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccccc------CCCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|...+.+.. .+.|+++|+||+|+.+..... ....+..++++|+..+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQG 152 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999999999 88888887754 579999999999996422111 123346788888887654
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=165.23 Aligned_cols=144 Identities=34% Similarity=0.597 Sum_probs=112.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeee-EEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
.+..+||+++|+++||||||+++|++..+. ..+.++....+. ..+..++..+.+.+|||||++++...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356899999999999999999999998874 455666655554 345678888999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999999999998 88999888766 5899999999999987654432 22356788898887754
No 54
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=171.28 Aligned_cols=144 Identities=32% Similarity=0.560 Sum_probs=112.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.++.+||+++|+++||||||+++|+++.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35689999999999999999999999888777777765444 45666788889999999999999999998999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999998 88998887754 5899999999999976655432 23456788999887755
No 55
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=6.2e-29 Score=165.73 Aligned_cols=141 Identities=27% Similarity=0.388 Sum_probs=105.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce-eeeeeEEEEECCeEEEEEEEeCCChhcccc-cccccccCCcEEEE
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFLL 83 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 83 (151)
.+||+++|++|||||||+++|.+..+...+.++. ...+...+.+++..+.+.+||++|++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999766544333333 445566777889999999999999998876 66677889999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.+|..+ ..|+..+.+... +.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 153 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCC
Confidence 9999999999999 888888887664 899999999999987666543 23456789999887755
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=5.2e-29 Score=167.26 Aligned_cols=144 Identities=32% Similarity=0.505 Sum_probs=119.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeee-eeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
+++.+||+++|++|||||||+++|+++.+...+.++.... ....+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 4577999999999999999999999988877777777544 356777888889999999999999999988899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.+
T Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 91 VVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999998 88888887654 5899999999999987655432 12345678888877654
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.1e-29 Score=169.36 Aligned_cols=144 Identities=28% Similarity=0.515 Sum_probs=115.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
....+||+++|+++||||||+++|+++.+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999888777667765443 55677788889999999999999998888899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC--------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 999999999999998 88999888775 4799999999999987655432 22466789999887755
No 58
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.6e-29 Score=166.92 Aligned_cols=142 Identities=27% Similarity=0.448 Sum_probs=118.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+.+||+++|++|||||||+++|+++.+...+.++....+...+..++..+.+.+|||||.+++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 47899999999999999999999988877777887777777777888889999999999999988888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 85 FSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+.+++.. ...+..++++|+..+.+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcC
Confidence 999999999998 77877776643 5799999999999987655432 12345678888877654
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=2.1e-28 Score=166.32 Aligned_cols=143 Identities=33% Similarity=0.518 Sum_probs=110.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.++.+||+++|.+|||||||+++|+++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+++++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 46789999999999999999999999888888888887777778888888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||+++..++..+ ..|+..+.+.. .+.|+++|+||+|+.+ +.+.. ...++.++++|+..+.+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 98 CVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQG 169 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999998 88998887764 4799999999999865 22211 22345788888887654
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.2e-29 Score=173.34 Aligned_cols=144 Identities=24% Similarity=0.356 Sum_probs=112.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc-ccccccccccCCcE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 80 (151)
...+||+++|++|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+|||+|.+. ++.....+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 46799999999999999999999964 3344444444445566778889999999999999876 55566677899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccccccCC-------CCCCCceeccceeeccC
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFSSG-------HPGATPITTSQVWVTND 148 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~~~~s~~~~~~~ 148 (151)
+++|||++++.+|..+ ..|...+.+. ..++|++|||||+|+.+.+++..+ ..++.++++|+.++.+.
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999 7888877654 257999999999999876665432 23457899999887654
No 61
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.7e-29 Score=169.76 Aligned_cols=144 Identities=28% Similarity=0.461 Sum_probs=117.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCcccee-eeeeEEEEECC-eEEEEEEEeCCChhcccccccccccCCcE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
.++.+||+++|+++||||||+++|.++.+...+.++.. +.+...+.+++ ..+.+.+|||||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 46789999999999999999999999888766667764 33456666765 67899999999999999988899999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA---PNVP-IVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~-iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+++|||++++.++..+ ..|+..+.+.. .+.| +++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999999999998 88998887753 2455 899999999987655432 12346778898887654
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=1.2e-28 Score=165.96 Aligned_cols=144 Identities=32% Similarity=0.565 Sum_probs=104.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC-CeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
....+||+++|++|||||||+++|++..+...+.++....+ ...+.++ +..+.+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45689999999999999999999999988877777775443 4455555 566889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCccccc-ccccC--------CCCCCCceeccceeec
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLRED-KQFSS--------GHPGATPITTSQVWVT 146 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~-~~~~~--------~~~~~~~~~~s~~~~~ 146 (151)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+.. ......++++|+..+.
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 9999999999999999 88988877653 57899999999999533 32221 1456678999988765
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 164 g 164 (182)
T 1ky3_A 164 N 164 (182)
T ss_dssp S
T ss_pred C
Confidence 5
No 63
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=167.60 Aligned_cols=144 Identities=33% Similarity=0.528 Sum_probs=120.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.+||+++|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||.+++...+..+++.++++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999988777777765544 45666788889999999999999998888899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999998 88988887764 5789999999999987655432 23456788998887654
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.9e-28 Score=167.50 Aligned_cols=144 Identities=29% Similarity=0.482 Sum_probs=116.4
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeE--------------------------
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGST-------------------------- 53 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------- 53 (151)
|.....+||+++|+++||||||+++|++..+...+.++....+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7788899999999999999999999999988877777775444 3345555444
Q ss_pred -----------EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 54 -----------~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
+.+.+|||||++++...+..+++.+|++++|||++++.++..+ ..|+..+.+... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence 8899999999999999888899999999999999999999998 889998887654 89999999999
Q ss_pred cccccccC-------CCCCCCceeccceeecc
Q 031880 123 REDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 123 ~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
...+.+.. ...+..++++|+..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 33333321 23456788999887654
No 65
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=171.11 Aligned_cols=144 Identities=27% Similarity=0.397 Sum_probs=113.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc-eeeeeeEEEEECCeEEEEEEEeCCChhcccc-cccccccCCcEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ 81 (151)
...+||+++|++|||||||+++|.+..+...+.++ ..+.+...+.+++..+.+.+|||+|++++.. ++..+++.++++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46799999999999999999999754332222233 3344556677889999999999999987764 666778999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
++|||++++.+|..+ ..|+..+.+.. .+.|+++||||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 999999999999999 88999887765 4899999999999987665532 223567899999877653
No 66
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=3.5e-29 Score=174.25 Aligned_cols=145 Identities=28% Similarity=0.438 Sum_probs=121.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
....+||+++|++|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++++++++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 35679999999999999999999888777666667765443 55667788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----CCCCCCceeccceeeccC
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----GHPGATPITTSQVWVTND 148 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----~~~~~~~~~~s~~~~~~~ 148 (151)
++|||++++.+|..+ ..|+..+.+..++.|+++|+||+|+.+.+.... ...+..++++|+..+.+.
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999 899999999888999999999999976443221 123466889998887654
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=170.73 Aligned_cols=145 Identities=34% Similarity=0.525 Sum_probs=109.9
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
...+.+||+++|+++||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 345689999999999999999999999988777777776555 4567788888999999999999999888888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccc------cccccC-------CCCCCCceeccceeec
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRE------DKQFSS-------GHPGATPITTSQVWVT 146 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~------~~~~~~-------~~~~~~~~~~s~~~~~ 146 (151)
+++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+ .+.+.. ...++.++++|+..+.
T Consensus 104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 9999999999999999 88999888765 5799999999999963 233321 1234567899988775
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 183 g 183 (199)
T 2p5s_A 183 N 183 (199)
T ss_dssp T
T ss_pred C
Confidence 5
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=2.4e-28 Score=165.98 Aligned_cols=143 Identities=37% Similarity=0.554 Sum_probs=118.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee--EEEEECCe---------EEEEEEEeCCChhccccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~d~~g~~~~~~~~~ 72 (151)
.+.+||+++|++|||||||+++|+++.+...+.++....+. ..+..++. .+.+.+|||||++++...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999998887777777765554 34555554 78999999999999998888
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccce
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQV 143 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~ 143 (151)
.+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+.. ...++.++++|+.
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999998 88999888765 5899999999999987555432 2235678889888
Q ss_pred eecc
Q 031880 144 WVTN 147 (151)
Q Consensus 144 ~~~~ 147 (151)
.+.+
T Consensus 168 ~~~~ 171 (195)
T 3bc1_A 168 NGTN 171 (195)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 7654
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=1.2e-28 Score=164.24 Aligned_cols=141 Identities=29% Similarity=0.591 Sum_probs=112.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
..+||+++|++|||||||+++|++..+...+.++....+ ...+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 579999999999999999999999988777777776554 4566677888999999999999999998899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+ +.+.. ...++.++++|+..+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDN 151 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCc-CccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 9999999999998 88998888765 5899999999999943 22211 22346788898887654
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=1.5e-28 Score=162.71 Aligned_cols=142 Identities=34% Similarity=0.507 Sum_probs=119.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
+.+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47899999999999999999999998887778888777777788888889999999999999988888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCC--CCCEEEEeeCCccccccccc------CCCCCCCceeccceeecc
Q 031880 85 FSLISKASYENVYKKWIPELRHYAP--NVPIVLVGTKLDLREDKQFS------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~Dl~~~~~~~------~~~~~~~~~~~s~~~~~~ 147 (151)
||++++.++..+ ..|+..+.+... +.|+++|+||+|+.+..... ....+..++++|+..+.+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQG 151 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999999999 889988877653 79999999999987521111 122345788888877654
No 71
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=4.8e-28 Score=166.46 Aligned_cols=143 Identities=31% Similarity=0.582 Sum_probs=118.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
....+||+++|++|||||||+++|++..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34689999999999999999999999988877777775443 55666778889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccccccccC--------CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA-----PNVPIVLVGTKLDLREDKQFSS--------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~s~~~~~~ 147 (151)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+ +.+.. ...+..++++|+..+.+
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 999999999999998 88888877654 4789999999999973 22211 14566789999887765
No 72
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-29 Score=172.93 Aligned_cols=143 Identities=30% Similarity=0.571 Sum_probs=121.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+||+++|+++||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4679999999999999999999999988877777775444 456667778899999999999999999889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999999 88999998876 6899999999999987665543 23456788999887754
No 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=1.1e-28 Score=171.01 Aligned_cols=144 Identities=39% Similarity=0.596 Sum_probs=118.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCe----------EEEEEEEeCCChhcccccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLR 71 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~i~d~~g~~~~~~~~ 71 (151)
.++.+||+++|+++||||||+++|+...+...+.++....+ ...+.+++. .+.+.+|||||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 35689999999999999999999999888777777765554 345556655 7899999999999999888
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccc
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQ 142 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~ 142 (151)
..+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+.. ...++.++++|+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 8899999999999999999999998 88988887655 5899999999999987655432 234567889998
Q ss_pred eeecc
Q 031880 143 VWVTN 147 (151)
Q Consensus 143 ~~~~~ 147 (151)
..+.+
T Consensus 181 ~~g~g 185 (217)
T 2f7s_A 181 ATGQN 185 (217)
T ss_dssp TTTBT
T ss_pred CCCCC
Confidence 87654
No 74
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.1e-28 Score=164.71 Aligned_cols=142 Identities=28% Similarity=0.572 Sum_probs=118.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+.+||+++|+++||||||+++|++..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 3579999999999999999999999988877777775554 456678888899999999999999999889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+ +.+.. ...+..++++|+..+.+
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 93 LVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 99999999999999 88999988765 5789999999999953 22211 23456688888887654
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=171.54 Aligned_cols=143 Identities=35% Similarity=0.654 Sum_probs=114.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
.+.+||+++|+++||||||+++|++..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4679999999999999999999999888777666665544 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 182 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999999 88999987765 4799999999999987665543 23456788999887654
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=6.2e-28 Score=164.93 Aligned_cols=144 Identities=24% Similarity=0.362 Sum_probs=110.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhc-ccccccccccCCcE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 80 (151)
+..+||+++|++|||||||+++|++ ..+...+.++..+.+...+.+++..+.+.+|||+|.+. ++.....+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4579999999999999999999995 33444444444455566778889999999999999876 55566677888999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+++|||++++.||..+ ..|...+.+.. ++.|+++|+||+|+.+.+.+.. ...++.++++|+.++.|.
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence 9999999999999998 88888777653 5799999999999976655432 124467899999887653
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=4.1e-28 Score=168.35 Aligned_cols=145 Identities=27% Similarity=0.424 Sum_probs=115.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEEC-CeEEEEEEEeCCChhcccccccccccCCcE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (151)
....+||+++|++|||||||+++|+++.+...+.++....... ..... +..+.+.+|||||++++...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3468999999999999999999999888877666666554433 33332 444889999999999999999899999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccccccc-------CCCCCCCceeccceeeccC
Q 031880 81 FLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFS-------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~-------~~~~~~~~~~~s~~~~~~~ 148 (151)
+++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+.+.+. ....+..++++|+..+.+.
T Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 9999999999999999 89999888765 358999999999998765443 2456677899999887654
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=2.5e-28 Score=166.37 Aligned_cols=145 Identities=24% Similarity=0.269 Sum_probs=110.2
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCc-----------cceeeee-eEEE-EECCeEEEEEEEeCCChhccc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYI-----------PTVFDNF-SANV-VVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~-----------~~~~~~~-~~~~-~~~~~~~~~~i~d~~g~~~~~ 68 (151)
.....+||+++|+++||||||++++. +.+...+. ++....+ ...+ .+++..+.+++|||||++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 34578999999999999999995554 45544433 2333332 2223 456778899999999999999
Q ss_pred ccccccccCCcEEEEEEeCC------ChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-----CCCCCC-C
Q 031880 69 RLRPLSYRGADVFLLAFSLI------SKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-----SGHPGA-T 136 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-----~~~~~~-~ 136 (151)
..+..+++++|++++|||++ +..+|..+ ..|+..+.....+.|+++|+||+|+.+..... ....++ .
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 167 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP 167 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce
Confidence 99999999999999999999 66788888 78888886656789999999999997542211 234556 8
Q ss_pred ceeccceeeccC
Q 031880 137 PITTSQVWVTND 148 (151)
Q Consensus 137 ~~~~s~~~~~~~ 148 (151)
++++|+..+.+.
T Consensus 168 ~~~~Sa~~~~gv 179 (198)
T 3t1o_A 168 VLEAVATEGKGV 179 (198)
T ss_dssp EEECBGGGTBTH
T ss_pred EEEEecCCCcCH
Confidence 899999877653
No 79
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.1e-27 Score=165.30 Aligned_cols=143 Identities=29% Similarity=0.576 Sum_probs=117.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
...+||+++|+++||||||+++|++..+...+.++....+ ...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4578999999999999999999999888777777776554 456777888899999999999999999889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeeccC
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~~ 148 (151)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+ +.+.. ...++.++++|+..+.+.
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-CCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999998 88998888765 4789999999999942 22211 123457889988876553
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=8.7e-28 Score=164.15 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=109.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
.....||+++|+++||||||+++|++..+.. .+.++.+..+. .+ +...+.+.+|||||++++...+..+++.+|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 4568899999999999999999999998877 67777763322 23 34457899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCccccccc---ccC--------CCCCCCceecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA---------PNVPIVLVGTKLDLREDKQ---FSS--------GHPGATPITTS 141 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~~iivv~nK~Dl~~~~~---~~~--------~~~~~~~~~~s 141 (151)
|+|||++++.+|..+ ..|+..+.+.. .+.|++||+||+|+.+.+. +.. ...++.++++|
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEee
Confidence 999999999999999 77777665431 2889999999999976532 211 33556788999
Q ss_pred ceeecc
Q 031880 142 QVWVTN 147 (151)
Q Consensus 142 ~~~~~~ 147 (151)
+..+.+
T Consensus 170 a~~g~g 175 (199)
T 4bas_A 170 GLKGTG 175 (199)
T ss_dssp TTTTBT
T ss_pred CCCccC
Confidence 887654
No 81
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=1.5e-27 Score=162.27 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=111.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|+++||||||+++|+++.+...+.++....+. .+. ...+.+.+|||||++++...+..+++.+|+++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KIT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 346899999999999999999999999887777777765543 233 33578999999999999998888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+. ..+.|+++|+||+|+.+.. ++.. ...+..++++|+..+.+
T Consensus 96 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 96 YMVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 99999999999998 6677666543 2689999999999997532 1111 12345578898887765
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.5e-28 Score=165.15 Aligned_cols=143 Identities=27% Similarity=0.434 Sum_probs=118.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
....++|+++|+++||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34679999999999999999999999988877888887777777778888899999999999999888888899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.+. .+.. ...+..++++|+..+.+
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-EVDTREAQAVAQEWKCAFMETSAKMNYN 157 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-SSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCcc-ccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 99999999999998 77777666543 47899999999999652 2211 12345678888877654
No 83
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=8e-30 Score=175.44 Aligned_cols=145 Identities=66% Similarity=1.081 Sum_probs=122.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|+.+.+...+.++....+...+..++..+.+.+|||||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 56899999999999999999999999888888888877777777778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc------------cccC-------CCCCC-Cceeccce
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK------------QFSS-------GHPGA-TPITTSQV 143 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------------~~~~-------~~~~~-~~~~~s~~ 143 (151)
|||++++.++..+...|+..+....++.|+++|+||+|+.+.+ .+.. ...+. .++++|+.
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 9999999999998448999888877789999999999997643 2211 12223 67888888
Q ss_pred eeccC
Q 031880 144 WVTND 148 (151)
Q Consensus 144 ~~~~~ 148 (151)
.+.+.
T Consensus 188 ~g~gi 192 (204)
T 3th5_A 188 TQRGL 192 (204)
Confidence 87654
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=6.2e-27 Score=158.55 Aligned_cols=139 Identities=15% Similarity=0.194 Sum_probs=110.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|+++||||||+++|.++. ...+.+|.... ...+..+ .+.+.+|||||++++...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 568999999999999999999999887 56666766533 3344454 3789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccccccC----------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFSS----------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~----------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+. ..+.|+++|+||+|+.+.+.... ...+..++++|+..+.+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 166 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCC
Confidence 9999999999998 7777766553 35899999999999976433211 13345688999887754
No 85
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=7.2e-27 Score=171.02 Aligned_cols=143 Identities=64% Similarity=1.081 Sum_probs=123.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 84 (151)
..+||+++|+++||||||+++|..+.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999999988888888888888888899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc------------ccccC-------CCCCC-Cceecccee
Q 031880 85 FSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED------------KQFSS-------GHPGA-TPITTSQVW 144 (151)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------~~~~~-------~~~~~-~~~~~s~~~ 144 (151)
||++++.+|..+...|+..+....++.|+++|+||+|+.+. +.+.. ...++ .++++|+..
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999855899999888789999999999999654 22221 11233 678999887
Q ss_pred ecc
Q 031880 145 VTN 147 (151)
Q Consensus 145 ~~~ 147 (151)
+.+
T Consensus 314 ~~g 316 (332)
T 2wkq_A 314 QRG 316 (332)
T ss_dssp CTT
T ss_pred CcC
Confidence 755
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.7e-27 Score=159.99 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=106.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|+++||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++++...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999988776 555555422 33445554 789999999999999998889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccccc---cc-------CCCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQ---FS-------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~---~~-------~~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.+|..+ ..|+..+.+. ..+.|+++|+||+|+.+... +. ....+..++++|+..+.+
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 164 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcC
Confidence 9999999999999 7788777664 36899999999999975321 11 123345788999887765
No 87
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=9.2e-28 Score=162.82 Aligned_cols=140 Identities=23% Similarity=0.341 Sum_probs=102.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC--CCCCCCccceeeee-eEEEEE---CCeEEEEEEEeCCChhcccccccccccCCc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYIPTVFDNF-SANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (151)
.+||+++|++|||||||+++|++. .+...+.+|.+..+ ...+.. ++..+.+.+|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999984 55555666665443 222222 235678999999999999988888899999
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc----------CCCCCCC----ceecccee
Q 031880 80 VFLLAFSLISK-ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS----------SGHPGAT----PITTSQVW 144 (151)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~----------~~~~~~~----~~~~s~~~ 144 (151)
++++|||++++ .++..+ ..|+..+.+..++.|+++||||+|+.+.+.+. ....++. ++++|+..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 589888 89999988777789999999999997655432 2234554 78999887
Q ss_pred ec
Q 031880 145 VT 146 (151)
Q Consensus 145 ~~ 146 (151)
+.
T Consensus 161 ~~ 162 (184)
T 2zej_A 161 ES 162 (184)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=4.5e-27 Score=161.32 Aligned_cols=116 Identities=21% Similarity=0.299 Sum_probs=90.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++ +.+.+|||||+++++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999988764 455555443 34556666 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLRE 124 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~ 124 (151)
|||++++.+|..+ ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 9999999999999 7788777653 25899999999999964
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=1.7e-26 Score=157.42 Aligned_cols=140 Identities=17% Similarity=0.260 Sum_probs=108.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|.++.+. .+.++.... ...+.+++ +.+.+|||||+++++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34679999999999999999999988764 455555443 44556666 789999999999999998899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccccc---ccC--------------CCCCCCceecccee
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQ---FSS--------------GHPGATPITTSQVW 144 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~---~~~--------------~~~~~~~~~~s~~~ 144 (151)
|||++++.+|..+ ..|+..+.+. ..+.|+++|+||+|+.+... ... ...++.++++|+.+
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM 175 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence 9999999999999 7787777553 25899999999999975211 110 12345688999887
Q ss_pred eccC
Q 031880 145 VTND 148 (151)
Q Consensus 145 ~~~~ 148 (151)
+.+.
T Consensus 176 g~gi 179 (190)
T 1m2o_B 176 RNGY 179 (190)
T ss_dssp TBSH
T ss_pred CCCH
Confidence 7653
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=157.18 Aligned_cols=141 Identities=14% Similarity=0.222 Sum_probs=109.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC-CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.+||+++|++|||||||+++|.+.. +...+.++.. .....+.+++ +.+.+|||||+++++..+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3467999999999999999999999877 5556666665 2334455554 6889999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCccccccccc--------C--CCCCCCceeccceeecc
Q 031880 82 LLAFSLISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLREDKQFS--------S--GHPGATPITTSQVWVTN 147 (151)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~~~~~--------~--~~~~~~~~~~s~~~~~~ 147 (151)
++|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+..... . ...+..++++|+..+.+
T Consensus 95 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 173 (190)
T 2h57_A 95 IFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG 173 (190)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcC
Confidence 999999999999998 77777766543 479999999999997542211 0 12355688898887654
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=5.4e-27 Score=158.49 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=108.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|+++||||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+|||||++++...+..+++.+|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999877 4445555433 33455555 78999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+. ..+.|+++|+||+|+.+.. ++.. ...+..++++|+..+.+
T Consensus 94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 99999999999998 6677666554 3689999999999997532 1211 22345678999887765
No 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=1.9e-27 Score=157.80 Aligned_cols=136 Identities=17% Similarity=0.237 Sum_probs=104.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEe
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 86 (151)
+||+++|++|||||||+++|.++.+.. +.||.... ...+.. ..+.+.+|||||+++++..+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887754 45555422 223333 44789999999999999888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeecc
Q 031880 87 LISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
++++.+|..+ ..|+..+.+. .++.|+++|+||+|+.+.. ++.. ...+..++++|+..+.+
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998 7777776543 3589999999999997642 2211 12334578899887654
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=2.7e-26 Score=153.04 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=108.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|+++||||||+++|..+.+. .+.++.... ...+.++ .+.+.+|||||++++...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 35799999999999999999999988775 345555432 3344455 4788999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccccc---cc-------CCCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDKQ---FS-------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~---~~-------~~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.+. +. ....+..++++|+..+.+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 9999999999998 66666655432 5899999999999976522 11 122345688999887755
No 94
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=9.8e-27 Score=160.95 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=93.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCe-EEEEEEEeCCChhcccc-cccccccCCcE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ 80 (151)
+.+.+||+++|++|||||||+++|+++.+...+.++...... +.+++. .+.+.+|||||++++.. .+..+++.+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 456899999999999999999999999887776655433332 555543 58899999999999887 77778999999
Q ss_pred EEEEEeCCChh-HHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccccc
Q 031880 81 FLLAFSLISKA-SYENVYKKWIPELRHY---APNVPIVLVGTKLDLREDK 126 (151)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~ 126 (151)
+++|||+++.. ++......|...+... ..+.|+++|+||+|+.+.+
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 99999999854 4666646666666542 2478999999999997653
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=7.5e-27 Score=158.02 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=107.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|.+..+ ..+.++.+.. ...+..+ .+.+.+|||||++.++..+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999998754 2344444422 3344455 4789999999999998888888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCccccccccc---C-------CCCCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFS---S-------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~---~-------~~~~~~~~~~s~~~~~~~ 148 (151)
|||++++.+|..+ ..|+..+.+. ..+.|+++|+||+|+.+.+... . ...+..++++|+..+.+.
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999998 7777766443 2589999999999997653321 1 123456789998887653
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.94 E-value=1.6e-26 Score=157.82 Aligned_cols=140 Identities=14% Similarity=0.194 Sum_probs=102.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
..+.+||+++|+++||||||+++|+.+.+. .+.+|... ....+..+ .+.+.+|||||++++...+..+++.+|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE-EEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce-eEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 457899999999999999999999988765 33444432 12334343 478999999999999988888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeecc
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
+|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+.+.. ++.. ...+..++++|+..+.+
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999998 77777765432 589999999999997642 2221 12334578899887654
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.8e-26 Score=155.74 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=104.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|++|||||||+++|..+.+ ..+.++.... ...+.+++ +.+.+|||||.+++...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998766 3444554422 33444554 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+. ..+.|+++|+||+|+.+.. ++.. ...+..++++|+..+.+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG 166 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 9999999999998 7777777654 3689999999999997542 1211 11234578898887755
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=2.3e-26 Score=156.20 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=107.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|+++||||||+++|..+.+.. +.+|.... ...+..+ .+.+.+|||||+++++..+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999999877643 44544422 3344444 4788999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCccccc---ccccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLRED---KQFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~---~~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+. +++.. ...+..++++|+..+.+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDG 170 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccC
Confidence 9999999999998 66666665432 58999999999999764 22221 22344678898887654
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=8.9e-27 Score=159.42 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=102.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeee-eeEEEEEC-CeEEEEEEEeCCChhcccccc---cccccC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDN-FSANVVVD-GSTVNLGLWDTAGQEDYNRLR---PLSYRG 77 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~---~~~~~~ 77 (151)
..+.+||+++|+++||||||++++.+. +........... ......+. +..+.+++|||+|+++|.... ..++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 356789999999999999999987764 332211111111 12233333 566889999999999987776 688999
Q ss_pred CcEEEEEEeCCCh--hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc-------cccccC-------C----CCCCCc
Q 031880 78 ADVFLLAFSLISK--ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE-------DKQFSS-------G----HPGATP 137 (151)
Q Consensus 78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-------~~~~~~-------~----~~~~~~ 137 (151)
++++|+|||++++ +++..+ ..|+..+.+..++.|++|||||+|+.+ .+.+.. . ..++.+
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 9999999999987 777777 778887766677999999999999743 233321 1 456778
Q ss_pred eeccceeecc
Q 031880 138 ITTSQVWVTN 147 (151)
Q Consensus 138 ~~~s~~~~~~ 147 (151)
+++|+.. .+
T Consensus 175 ~e~Sa~~-~~ 183 (196)
T 3llu_A 175 YLTSIYD-HS 183 (196)
T ss_dssp EEECTTS-TH
T ss_pred EEEEech-hh
Confidence 9999876 44
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=4.8e-25 Score=151.10 Aligned_cols=142 Identities=38% Similarity=0.608 Sum_probs=113.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|+++++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 5689999999999999999999999988777777765443 557778898899999999999999888888889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeec
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVT 146 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~ 146 (151)
+|||+++..++..+ ..|+..+.+.. .+.|+++++||+|+.+.+.+.. ...++.++++|+..+.
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 153 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999988 78888776654 5789999999999986554431 2344556777766554
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=2.3e-25 Score=162.41 Aligned_cols=137 Identities=23% Similarity=0.325 Sum_probs=103.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCC-CCccceeeeeeEEEEECCeEEEEEEEeCCChhcc-----ccccccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~~ 76 (151)
..+||+++|++|||||||+++|+++. +.. .+.+|....+. .+.+.+ .+.+.+|||||++++ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 46899999999999999999999873 222 23344443332 344444 588999999999988 677778889
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHH---HhhhCCCCCEEEEeeCCcccc--ccc----cc-------CCCC---CCCc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPE---LRHYAPNVPIVLVGTKLDLRE--DKQ----FS-------SGHP---GATP 137 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~~iivv~nK~Dl~~--~~~----~~-------~~~~---~~~~ 137 (151)
++|++++|||++++.+|..+ ..|... +.+..++.|+++||||+|+.+ .+. +. .... .+.+
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998 666544 444467899999999999976 443 11 1222 3678
Q ss_pred eecccee
Q 031880 138 ITTSQVW 144 (151)
Q Consensus 138 ~~~s~~~ 144 (151)
+++|+..
T Consensus 159 ~~tSa~~ 165 (307)
T 3r7w_A 159 FPTSIWD 165 (307)
T ss_dssp EECCTTS
T ss_pred EEeeecC
Confidence 8888765
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=2.7e-24 Score=146.70 Aligned_cols=142 Identities=37% Similarity=0.600 Sum_probs=115.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
+..++|+++|++|||||||+++|.+..+...+.++....+ ...+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3568999999999999999999999988777777776554 567778898899999999999999888888889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccC-------CCCCCCceeccceeec
Q 031880 83 LAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVWVT 146 (151)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~~~ 146 (151)
+|||+++..+|..+ ..|+..+.+.. .+.|+++++||+|+.+.+.+.. ...+..++++|+..+.
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST 177 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999988 77888776644 4789999999999986544321 2344556777766554
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=159.96 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=105.7
Q ss_pred CcceEEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCccce-eeee-eEE--------------EEECCeEE
Q 031880 3 TARFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYIPTV-FDNF-SAN--------------VVVDGSTV 54 (151)
Q Consensus 3 ~~~~~ki~viG~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~-~~~--------------~~~~~~~~ 54 (151)
.+..+||+++|++ +||||||+++|+. ..+...+.++. ...+ ... ..+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999998 66666666665 2221 111 12456778
Q ss_pred EEEEEe-----------------------CCChhccccccccccc---------------------CCcEEEEEEeCCCh
Q 031880 55 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFLLAFSLISK 90 (151)
Q Consensus 55 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 90 (151)
.+++|| ++|++++...+..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 6677777777777777 79999999999998
Q ss_pred --hHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeeccC
Q 031880 91 --ASYENVYKKWIPELRHY--APNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 91 --~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~~ 148 (151)
.+|..+ ..|+..+.+. ..+.|++||+||+|+.+.+.+.. ...+..++++|+..+.+.
T Consensus 176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 999999 8899888765 26899999999999976554421 224677899999877653
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=3.5e-25 Score=161.54 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=96.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc---cccccccCCcEE
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~~ 81 (151)
||+++|++|||||||++++.++-+.. .+.+|.+..+.. ++ ..+++++|||+|+++|+. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999888654322 244555544432 22 348899999999999974 357789999999
Q ss_pred EEEEeCCCh--hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc-------ccccC-------CC----CCCCceecc
Q 031880 82 LLAFSLISK--ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED-------KQFSS-------GH----PGATPITTS 141 (151)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-------~~~~~-------~~----~~~~~~~~s 141 (151)
|+|||++++ +++..+ ..|+..+.+..+++|++++|||+|+.++ |++.. +. .++.++++|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 999999987 333333 3445555566679999999999999754 23322 22 467889999
Q ss_pred cee
Q 031880 142 QVW 144 (151)
Q Consensus 142 ~~~ 144 (151)
+..
T Consensus 156 Akd 158 (331)
T 3r7w_B 156 IFD 158 (331)
T ss_dssp SSS
T ss_pred cCC
Confidence 864
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.5e-25 Score=162.22 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=99.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
.+.+||+++|+++||||||+++|..+.+... .+|....+ ..+ +...+.+.+|||||++.+...+..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~-~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE-EEE--EETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE-EEE--ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4568999999999999999999998876533 23332222 223 3344789999999999999999899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccccccc---C-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFS---S-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~---~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.+|..+...|...+.... +++|++||+||+|+.+..... . ...+..++++|+..+.+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 9999999999998444444444332 589999999999997643221 1 12344578999887655
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=9.3e-25 Score=146.69 Aligned_cols=140 Identities=22% Similarity=0.199 Sum_probs=101.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc--------ccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 74 (151)
...||+++|++|||||||+++|.+..+ ...+.++....+...+.+++. .+.+|||||++++.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998654 333444444445566667764 47899999986543211 134
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccccccccCCCCCCCceeccceeeccC
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYA-PNVPIVLVGTKLDLREDKQFSSGHPGATPITTSQVWVTND 148 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~s~~~~~~~ 148 (151)
++.+|++++|||++++.++.. ..|+..+.+.. .++|+++|+||+|+.+.........+..++++|+..+.+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTH
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCH
Confidence 789999999999999888764 46777766554 4799999999999965432222334567889999887653
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=9.4e-24 Score=162.62 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=107.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
++.+||+++|.++||||||+++|.+..+. .+.+|....+. .+. ...+.+.+|||+|++.++..+..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE-EEE--SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE-EEE--eCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46799999999999999999999988765 34555544332 233 344789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccccc---cccC-------CCCCCCceeccceeecc
Q 031880 84 AFSLISKASYENVYKKWIPELRHYA--PNVPIVLVGTKLDLREDK---QFSS-------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~---~~~~-------~~~~~~~~~~s~~~~~~ 147 (151)
|||++++.+|..+ ..|+..+.+.. .++|++||+||+|+.+.. ++.. ......++++|+.++.+
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 9999999999999 66666664432 589999999999996542 1211 12234478999887765
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.2e-23 Score=141.06 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=99.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (151)
..+.++|+++|++|||||||+++|.+..+...+.++....+ ...+..++. .+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35688999999999999999999999888766555543332 345556664 567999999999999998899999999
Q ss_pred EEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccc--ccc---CC------CC--CCCceeccceee
Q 031880 82 LLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDK--QFS---SG------HP--GATPITTSQVWV 145 (151)
Q Consensus 82 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~---~~------~~--~~~~~~~s~~~~ 145 (151)
++|||+++ ..++..+ ..+.. .+.|+++|+||+|+.+.. .+. .+ .. ...++++|+..+
T Consensus 83 i~v~d~~~~~~~~~~~~l-----~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI-----NHAKA--ANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHHHHHH-----HHHGG--GSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHHHHHH-----HHHHh--CCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999988 4444333 22222 378999999999997531 111 11 11 146788998876
Q ss_pred cc
Q 031880 146 TN 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 156 ~g 157 (178)
T 2lkc_A 156 EG 157 (178)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=9.5e-24 Score=140.68 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce-eeeeeEEEEECCeEEEEEEEeCCChhccccc------cccccc-
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR- 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~- 76 (151)
+.++|+++|++|||||||+++|.+..+...+.++. .......+..++ ..+.+|||||++++... ...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 47899999999999999999999876644433332 223344455555 57899999999877532 234443
Q ss_pred -CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeeccC
Q 031880 77 -GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTND 148 (151)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~~ 148 (151)
+++++++|+|.++..+ . ..|+..+.+. +.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+.
T Consensus 80 ~~~~~~i~v~D~~~~~~---~-~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---N-LYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---H-HHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---h-HHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999987543 3 4466666553 789999999999976554432 123467899999887653
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.90 E-value=5.4e-24 Score=165.34 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=102.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEE---------EECCeEEEEEEEeCCChhcccccc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLR 71 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~d~~g~~~~~~~~ 71 (151)
|.....+||+++|.++||||||+++|.+..+...+.++.+..+.... ..++..+.+.+||+||++.+....
T Consensus 36 ~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 36 LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 34567899999999999999999999999887777777765544321 112346789999999999999988
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-------CCCCCCceecccee
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-------GHPGATPITTSQVW 144 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-------~~~~~~~~~~s~~~ 144 (151)
..+++.++++++|||+++. ... ..|...+....++.|+++|+||+|+.+.+.+.. ...+..++++|+.+
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HHHccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence 8899999999999998754 455 788899988877899999999999987655432 23345689999988
Q ss_pred eccCC
Q 031880 145 VTNDN 149 (151)
Q Consensus 145 ~~~~~ 149 (151)
+.+.+
T Consensus 192 g~gi~ 196 (535)
T 3dpu_A 192 GDGVE 196 (535)
T ss_dssp ---CT
T ss_pred ccCHH
Confidence 76643
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=5.3e-23 Score=135.76 Aligned_cols=135 Identities=24% Similarity=0.211 Sum_probs=89.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc-------cccccccccC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~ 77 (151)
.||+++|++|||||||+++|.+..+. ..+.++........+..++. .+.+|||||...+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987642 23333333444455556664 6889999998873 3334456789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCC--CCCC-Cceeccceeecc
Q 031880 78 ADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSG--HPGA-TPITTSQVWVTN 147 (151)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~--~~~~-~~~~~s~~~~~~ 147 (151)
+|++++|||+++..+... ..+...+.+ .+.|+++|+||+|+.+.++...+ ..+. .++++|+..+.+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCC
Confidence 999999999987544332 223333333 37899999999999765332211 2233 678999887654
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=1.3e-23 Score=143.07 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=92.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeE-EEEECCeEEEEEEEeCCC----------hhcccccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSA-NVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 71 (151)
....++|+++|++|||||||+++|++..+...+.++...+... ....++ .+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 4567999999999999999999999887655555555443322 223333 588999999 66776666
Q ss_pred cccccCC---cEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc----------CCCCCCCce
Q 031880 72 PLSYRGA---DVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS----------SGHPGATPI 138 (151)
Q Consensus 72 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~----------~~~~~~~~~ 138 (151)
..+++.+ +++++|+|++++.++... . +...+.+ .+.|+++|+||+|+.+.+++. .......++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDV-Q-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 6666666 999999999988777664 2 2333333 478999999999997654432 123456789
Q ss_pred eccceeecc
Q 031880 139 TTSQVWVTN 147 (151)
Q Consensus 139 ~~s~~~~~~ 147 (151)
++|+..+.+
T Consensus 173 ~~Sa~~~~g 181 (195)
T 1svi_A 173 LFSSETKKG 181 (195)
T ss_dssp ECCTTTCTT
T ss_pred EEEccCCCC
Confidence 999887754
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=2.4e-23 Score=145.49 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=94.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CccceeeeeeEEEEECCeEEEEEEEeCCChhccc---------ccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPL 73 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~ 73 (151)
++.++|+++|++|||||||+++|++..+... +..+...........++ ..+.+|||||..... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999998776422 11112222222333333 678999999983211 11123
Q ss_pred cccCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhhCCCCCEEEEeeCCcccccccccC----------CCCC--CCceec
Q 031880 74 SYRGADVFLLAFSLISKASYENV-YKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS----------GHPG--ATPITT 140 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~----------~~~~--~~~~~~ 140 (151)
++..+|++++|||++++.+|... ...|+..+....++.|+++|+||+|+.+.+.+.. ...+ ..++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 46788999999999998887522 1466777766556899999999999976655432 1222 678899
Q ss_pred cceeecc
Q 031880 141 SQVWVTN 147 (151)
Q Consensus 141 s~~~~~~ 147 (151)
|+..+.+
T Consensus 185 SA~~g~g 191 (228)
T 2qu8_A 185 STLTGVG 191 (228)
T ss_dssp CTTTCTT
T ss_pred ecccCCC
Confidence 9887765
No 114
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-23 Score=142.49 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=87.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC---CCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccC---
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--- 77 (151)
.+.++|+++|++|||||||+++|.+..+.. .+.++.. .+...+.+.+|||||.+.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 456899999999999999999999887643 1112221 12234578899999999988777777665
Q ss_pred -CcEEEEEEeCC-ChhHHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCcccccccc
Q 031880 78 -ADVFLLAFSLI-SKASYENVYKKWIPELRHY-----APNVPIVLVGTKLDLREDKQF 128 (151)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~Dl~~~~~~ 128 (151)
+|++++|||++ +..++..+ ..|+..+... ..+.|+++|+||+|+.+.+.+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 89999988 6666655432 258999999999999775543
No 115
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=1.5e-23 Score=145.20 Aligned_cols=137 Identities=11% Similarity=0.119 Sum_probs=95.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCC---CCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccC--
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG-- 77 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~-- 77 (151)
..+.++|+++|++|||||||+++|.+..+.. .+.++....+ ..+.+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 3467899999999999999999999887643 2333333222 44678899999999998877777776
Q ss_pred --CcEEEEEEeCC-ChhHHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCccccccccc------C-------CCCCCC
Q 031880 78 --ADVFLLAFSLI-SKASYENVYKKWIPELRHY-----APNVPIVLVGTKLDLREDKQFS------S-------GHPGAT 136 (151)
Q Consensus 78 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~Dl~~~~~~~------~-------~~~~~~ 136 (151)
++++++|||++ ++.+|..+ ..|+..+... ..+.|+++|+||+|+.+.+.+. . ...+..
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 88899888 6666665442 3589999999999997765432 1 112344
Q ss_pred ceeccceeeccC
Q 031880 137 PITTSQVWVTND 148 (151)
Q Consensus 137 ~~~~s~~~~~~~ 148 (151)
++++|+..+.+.
T Consensus 160 ~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 160 LNEVERKINEED 171 (218)
T ss_dssp HHC---------
T ss_pred cccccccccccc
Confidence 677777666543
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=5.6e-23 Score=139.14 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=98.1
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce-eeeeeEEEEECCeEEEEEEEeCCChhcccc------ccccc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLS 74 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~ 74 (151)
+.++.++|+++|++|||||||+++|++..+...+.++. .......+..++ +.+.+|||||++++.. ....+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 45678999999999999999999999865433333332 233344555554 6789999999988752 23344
Q ss_pred cc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeec
Q 031880 75 YR--GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVT 146 (151)
Q Consensus 75 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~ 146 (151)
+. .++++++|+|.++ +... ..|...+.+ .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTB
T ss_pred HhccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCC
Confidence 43 5999999999864 4555 667777665 3789999999999976654432 1235678899988765
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 155 ~ 155 (188)
T 2wjg_A 155 G 155 (188)
T ss_dssp S
T ss_pred C
Confidence 4
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=6.4e-22 Score=143.80 Aligned_cols=139 Identities=19% Similarity=0.141 Sum_probs=93.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCccceeeeeeEEEEECCeEEEEEEEeCCChhcc--------cccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPL 73 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~ 73 (151)
.+..+|+++|.+|||||||+++|++..+.. ....++.......... ...++.+|||||..+. ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 356789999999999999999999887642 2222333222222222 3478899999998763 334445
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc-ccC----CCCCCCceeccceeec
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ-FSS----GHPGATPITTSQVWVT 146 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~----~~~~~~~~~~s~~~~~ 146 (151)
+++.+|++++|+|++++.+... ..+...+.+..++.|+++|+||+|+.+.+. +.. ......++++|+..+.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDER 158 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCC
Confidence 6889999999999987654433 334456666556799999999999976544 211 1122345777776554
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=1.1e-21 Score=139.68 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=96.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc------cccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY 75 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~~ 75 (151)
+++.++|+++|++|||||||+++|++..+... +..+........+...+ ..+.+|||||...+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 35689999999999999999999998765322 22222222233444444 688999999998776532 3344
Q ss_pred --cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeecc
Q 031880 76 --RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~ 147 (151)
..+|++++|+|.++.++.. .|...+.+. +.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hhcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876543 345555443 799999999999976555432 23357788999887754
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=2e-21 Score=141.65 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=101.9
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCccceeeeeeEEEEECCeEEEEEEEeCCChhccc----------c
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----------R 69 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~ 69 (151)
+++..-.|+++|.+|||||||+++|++..+.. ....++........... ..+++.+|||||..++. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45667899999999999999999999887642 22233333333333333 14778899999986654 3
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-c-------CCC-CCCCceec
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-S-------SGH-PGATPITT 140 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~-------~~~-~~~~~~~~ 140 (151)
....+++.+|++++|+|+++..++... ..|+..+.+. +.|+++|+||+|+.+.+.. . ... ....++++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 445567899999999999998888887 7778888774 7899999999999732222 1 112 33567888
Q ss_pred cceeecc
Q 031880 141 SQVWVTN 147 (151)
Q Consensus 141 s~~~~~~ 147 (151)
|+..+.+
T Consensus 162 SA~~g~g 168 (308)
T 3iev_A 162 SALKGAN 168 (308)
T ss_dssp BTTTTBS
T ss_pred eCCCCCC
Confidence 8877654
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=7.3e-22 Score=141.78 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=93.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc-eeeeeeEEEEECCeEEEEEEEeCCChhcccccc----------cc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PL 73 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------~~ 73 (151)
+.++|+++|.+|||||||+++|.+..+.....+. +.......+...+ ..+.+|||||...+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 5799999999999999999999987653322222 2333344555554 457799999998776321 11
Q ss_pred c--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceee
Q 031880 74 S--YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWV 145 (151)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~ 145 (151)
+ .+.+|++++|+|.++.++...+ ...+.+. +.|+++|+||+|+.+.+.... +..++.++++|+..+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 2 2689999999999887655544 3333333 789999999999876544322 234577888888876
Q ss_pred cc
Q 031880 146 TN 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 154 ~g 155 (274)
T 3i8s_A 154 RG 155 (274)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 121
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.85 E-value=1.1e-21 Score=150.15 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=83.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc--------ccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 74 (151)
..++|+++|.+|||||||+++|++.. +...+.+++.+.+...+.+++ +.+.+|||||..++.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 35899999999999999999999874 344455555666666777776 568899999987765433 336
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC----CCCCCCceeccceeecc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS----GHPGATPITTSQVWVTN 147 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~----~~~~~~~~~~s~~~~~~ 147 (151)
++.+|++++|+|.+++.++..+ ..+...+... .+.|+++|+||+|+.+.+.... ......++++|+.++.+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCC
Confidence 7899999999999998887543 3333333332 3789999999999976654421 11125678888887654
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.85 E-value=2.9e-21 Score=131.01 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=91.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCC----------hhccccccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP 72 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 72 (151)
....+||+++|++|||||||+++|++..+ ..+.++............+ ..+.+||||| .+.+.....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34568999999999999999999998873 3334444333332222222 2467999999 566666666
Q ss_pred ccccCC---cEEEEEEeCCChhHHHHH-HHHHHHHHhhhCCCCCEEEEeeCCccccccccc----------CCCCCCCce
Q 031880 73 LSYRGA---DVFLLAFSLISKASYENV-YKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS----------SGHPGATPI 138 (151)
Q Consensus 73 ~~~~~~---~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~----------~~~~~~~~~ 138 (151)
.+++.+ +++++|+|.++..+.... ...|+... +.|+++|+||+|+.+..... .......++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 666554 999999998765333322 03343332 78999999999996433221 123456789
Q ss_pred eccceeecc
Q 031880 139 TTSQVWVTN 147 (151)
Q Consensus 139 ~~s~~~~~~ 147 (151)
++|+..+.+
T Consensus 172 ~~Sa~~~~g 180 (195)
T 3pqc_A 172 PTSSVTGEG 180 (195)
T ss_dssp ECCTTTCTT
T ss_pred EEecCCCCC
Confidence 999887765
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=7.9e-22 Score=140.35 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=94.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCcc-ceeeeeeEEEEECCeEEEEEEEeCCChhcccc----------cccccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY 75 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 75 (151)
.+|+++|.+|||||||+++|.+..+.....+ ++.......+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998765332222 333344555556664 788999999987764 233445
Q ss_pred --cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeecc
Q 031880 76 --RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~ 147 (151)
+.+|++++|+|.++.+++..+ . ..+.+. +.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l-~---~~l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL-T---SQLFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIG 153 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH-H---HHHTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBS
T ss_pred hhCCCCEEEEEeeCCCchhHHHH-H---HHHHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 789999999999987665554 3 333332 789999999999876554322 23457788998887654
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=2.2e-21 Score=139.11 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=93.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc------ccccccc-
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~- 76 (151)
..++|+++|++|||||||+++|.+... ...+.++... .....+.. ...+.+|||||+..+.. ....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999998754 3333322222 22333344 56788999999988753 2334443
Q ss_pred -CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeecc
Q 031880 77 -GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~ 147 (151)
.+|++++|+|+++.+++. .|...+.+ .+.|+++|+||+|+.+.+.+.. ...++.++++|+..+.+
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCC
Confidence 699999999998865543 44555544 3889999999999976554432 12356788999887654
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.85 E-value=4.9e-22 Score=134.47 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=95.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCC-----------hhcccccccccc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~ 75 (151)
+||+++|++|||||||+++|++..+...+.++.... ....... .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999988776655544222 2223333 578999999 666766666677
Q ss_pred cC-CcEEEEEEeCCChhHHHHHHHHHHHH--------Hhhh--CCCCCEEEEeeCCccccccc--cc--CCCCCC-----
Q 031880 76 RG-ADVFLLAFSLISKASYENVYKKWIPE--------LRHY--APNVPIVLVGTKLDLREDKQ--FS--SGHPGA----- 135 (151)
Q Consensus 76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~--~~~~~iivv~nK~Dl~~~~~--~~--~~~~~~----- 135 (151)
+. ++++++||++.+..++..+...|... +.+. ..+.|+++|+||+|+.+.+. .. ....+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhcc
Confidence 76 88888888888888888775667642 2111 14799999999999976541 11 111122
Q ss_pred --Cceeccceeecc
Q 031880 136 --TPITTSQVWVTN 147 (151)
Q Consensus 136 --~~~~~s~~~~~~ 147 (151)
.++++|+..+.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (190)
T 2cxx_A 157 DKVFIPISAKFGDN 170 (190)
T ss_dssp HHHEEECCTTTCTT
T ss_pred CCcEEEEecCCCCC
Confidence 358888887765
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=2.1e-21 Score=147.52 Aligned_cols=140 Identities=15% Similarity=0.135 Sum_probs=98.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChh----------cccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR 71 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~ 71 (151)
+..+||+++|.++||||||+++|++..+ ...+.+++.+.....+..++. .+.+|||||+. .|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 3568999999999999999999998765 344555555555666667764 47899999983 333222
Q ss_pred c-ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------------CCCCCCCce
Q 031880 72 P-LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------------SGHPGATPI 138 (151)
Q Consensus 72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------------~~~~~~~~~ 138 (151)
. .+++.+|++++|+|++++.++... .|...+.. .+.|+++|+||+|+.+.+... .......++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 357889999999999998888775 46666655 378999999999997654421 122456788
Q ss_pred eccceeeccCC
Q 031880 139 TTSQVWVTNDN 149 (151)
Q Consensus 139 ~~s~~~~~~~~ 149 (151)
++|+.++.+.+
T Consensus 327 ~~SA~tg~~v~ 337 (436)
T 2hjg_A 327 FMSALTKKRIH 337 (436)
T ss_dssp ECCTTTCTTGG
T ss_pred EEecccCCCHH
Confidence 99998876643
No 127
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=1.5e-20 Score=134.09 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=85.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccccccc-----
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR----- 76 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----- 76 (151)
++.++|+++|.+|+|||||+++|++..+ ...+.++........+..++ ..+.+|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999998764 33444444333444455555 47889999999888665444433
Q ss_pred ----CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccc
Q 031880 77 ----GADVFLLAFSLISKASYENVYKKWIPELRHYAP---NVPIVLVGTKLDLRE 124 (151)
Q Consensus 77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~Dl~~ 124 (151)
.+|++++|++++... +......|+..+.+... ..|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987644 44443567777766542 248999999999853
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=2.6e-21 Score=134.31 Aligned_cols=140 Identities=14% Similarity=-0.010 Sum_probs=91.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEEC-CeEEEEEEEeCCCh----------hcccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVD-GSTVNLGLWDTAGQ----------EDYNRLR 71 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~----------~~~~~~~ 71 (151)
...++|+++|.+|||||||+++|++.............+. ....... .....+.+|||||. +.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 4578999999999999999999998763211112111111 1122233 33467889999994 3334444
Q ss_pred cccccC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc----------CC------C
Q 031880 72 PLSYRG---ADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS----------SG------H 132 (151)
Q Consensus 72 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~----------~~------~ 132 (151)
..+++. +|++++|+|.++..+... ..|+..+.+ .+.|+++|+||+|+.+.+... .. .
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 444444 788999999987544332 455666655 378999999999997544321 11 2
Q ss_pred CCCCceeccceeecc
Q 031880 133 PGATPITTSQVWVTN 147 (151)
Q Consensus 133 ~~~~~~~~s~~~~~~ 147 (151)
....++++|+..+.+
T Consensus 183 ~~~~~~~~SA~~g~g 197 (223)
T 4dhe_A 183 GKLTVQLFSALKRTG 197 (223)
T ss_dssp SCEEEEEEBTTTTBS
T ss_pred CCCeEEEeecCCCcC
Confidence 556678888877654
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=1.2e-20 Score=135.08 Aligned_cols=137 Identities=19% Similarity=0.085 Sum_probs=93.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce-eeeeeEEEEECCeEEEEEEEeCCChhcccc------cccccc-
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY- 75 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~- 75 (151)
++.++|+++|++|||||||+++|.+..+.....+.. .......+..++ ..+.+|||||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 357899999999999999999999876633333333 233344555555 4588999999987765 233344
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------CCCCCCceeccceeecc
Q 031880 76 -RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------~~~~~~~~~~s~~~~~~ 147 (151)
..+|++++|+|.++... . ..|...+.+. ...|+++|+||+|+.+.+.... ...++.++++|+..+.+
T Consensus 79 ~~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC
Confidence 68999999999987542 2 2333344332 1389999999999876544332 23346678888876654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.83 E-value=9.6e-21 Score=143.01 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=96.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccccc-------cc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS 74 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-------~~ 74 (151)
...++|+++|++++|||||+++|++..+. ..+.+++.......+...+. ..+.+|||||++++..... .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 35789999999999999999999987752 33344444444556666554 3788999999988765533 36
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-----cCCCCCCCceeccceeeccCC
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF-----SSGHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~s~~~~~~~~ 149 (151)
+..+|++++|+|...... . ..|+..+.+. +.|+++|+||+|+.+.+.. ..+..+..++++|+.++.+.+
T Consensus 111 l~~aD~vllVvD~~~~~~---~-~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY---E-DDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp HTSCSEEEEECSSSCCHH---H-HHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred HhcCCEEEEEEeCCChHH---H-HHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 788999999999833322 2 5567777665 8899999999999866543 234556788999998876543
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=3.5e-20 Score=140.86 Aligned_cols=134 Identities=22% Similarity=0.198 Sum_probs=85.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc---------ccccccccc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYR 76 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~ 76 (151)
+|+++|.++||||||+++|++... ...+.+++.+.....+..++. .+.+|||||.+.. ......+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 799999999999999999998763 344444555555666777774 5789999997642 233445689
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc-c-cc-cC-CCCCC-Cceeccceeecc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED-K-QF-SS-GHPGA-TPITTSQVWVTN 147 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-~-~~-~~-~~~~~-~~~~~s~~~~~~ 147 (151)
.+|++++|+|+.+..+.... .+...+++. +.|+++|+||+|+.+. . .. .. ...+. .++++|+..+.+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 99999999999876544331 222233332 7899999999998643 1 11 00 11223 578888877654
No 132
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.82 E-value=8.5e-20 Score=130.67 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=81.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccc---------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL--------- 73 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~--------- 73 (151)
..++|+++|.+|+|||||+++|++..+. ..+.++......... ......+.+|||||..++......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR--SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE--EETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE--eeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5799999999999999999999987652 222333222222233 333467999999998776543321
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCcccccc
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAP-N--VPIVLVGTKLDLREDK 126 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~~iivv~nK~Dl~~~~ 126 (151)
....+|++++|+|++.. ++......|+..+.+... + .|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 13479999999998653 354443567777766533 2 6999999999986443
No 133
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.81 E-value=7e-20 Score=139.77 Aligned_cols=135 Identities=23% Similarity=0.283 Sum_probs=90.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc--------ccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 74 (151)
..++|+++|++|||||||+++|++..+ .....+++.+.....+.+++ ..+.+|||||..++.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 357999999999999999999997533 34444555555556666777 467899999986654332 235
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCC---CCCCCceeccceeecc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSG---HPGATPITTSQVWVTN 147 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~---~~~~~~~~~s~~~~~~ 147 (151)
++.+|++++|+|.+++.+... ..|+..+. +.|+++|+||+|+...+..... .....++++|+.++.+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCC
Confidence 788999999999998766655 35555553 4699999999999876554321 1345678888887654
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1.2e-20 Score=143.36 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=82.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChh--------cccccccccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSY 75 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~ 75 (151)
..+|+++|.+|||||||+++|++..+. ..+.+++.+.....+ ......+.+|||+|.+ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999986542 222333333333333 3233568899999985 4555566678
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCCC--CC-CCceeccceeecc
Q 031880 76 RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSGH--PG-ATPITTSQVWVTN 147 (151)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~--~~-~~~~~~s~~~~~~ 147 (151)
+.+|++++|+|+.++.++... .+...+++ .+.|+++|+||+|+.+.+....+. .+ ..++++|+..+.+
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCC
Confidence 899999999999887665542 34444544 478999999999987543322211 12 2567788776654
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=3.4e-20 Score=141.54 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=98.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCccceeeeeeEEEEECCeEEEEEEEeCCC----------hhcccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 71 (151)
...+||+++|.+++|||||+++|++.. ....+.++..+.+...+..++. .+.+||||| +++|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 457899999999999999999999764 2344555555555666777765 688999999 55555544
Q ss_pred c-ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC------------CCCCCCce
Q 031880 72 P-LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS------------GHPGATPI 138 (151)
Q Consensus 72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~------------~~~~~~~~ 138 (151)
. .+++.+|++++|+|.++..+... ..|...+.+ .+.|+++|+||+|+.+.+.... ......++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 35788999999999987544333 456666655 3789999999999976544321 12356789
Q ss_pred eccceeeccCC
Q 031880 139 TTSQVWVTNDN 149 (151)
Q Consensus 139 ~~s~~~~~~~~ 149 (151)
++|+.++.+.+
T Consensus 347 ~~SA~~g~gv~ 357 (456)
T 4dcu_A 347 FMSALTKKRIH 357 (456)
T ss_dssp ECCTTTCTTGG
T ss_pred EEcCCCCcCHH
Confidence 99998876643
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=125.43 Aligned_cols=121 Identities=18% Similarity=0.099 Sum_probs=75.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc---eeeeeeEEEEECCeEEEEEEEeCCChh-----------ccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT---VFDNFSANVVVDGSTVNLGLWDTAGQE-----------DYN 68 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~-----------~~~ 68 (151)
....++|+++|.+|||||||+++|++..+.....++ ...........++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 356799999999999999999999988775443332 1222233444555 467899999943 333
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccccccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQF 128 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~ 128 (151)
......++++|++++|+|+++..... ..|+..+.+.. ...|+++|+||+|+...+.+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 44444567889999999987543311 22333332211 24599999999998655443
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=4.8e-19 Score=131.43 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=96.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeeeeEEEEECCeEEEEEEEeCCChhcccc---------cccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPL 73 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~ 73 (151)
...++|+++|.+|||||||+++|.+..... .+..++.......+... ...+.+|||||...+.. ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356799999999999999999999876421 12222222222233333 35788999999754321 1112
Q ss_pred cccCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----CCCCCCceeccceeec
Q 031880 74 SYRGADVFLLAFSLISKA--SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS-----GHPGATPITTSQVWVT 146 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-----~~~~~~~~~~s~~~~~ 146 (151)
+...+|++++|+|+++.. ++... ..|+..+.....+.|+++|+||+|+.+.+.+.. ...+..++++|+..+.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 321 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGT 321 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTB
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCc
Confidence 345799999999998876 66776 778888877666899999999999976544321 1235667888877665
Q ss_pred c
Q 031880 147 N 147 (151)
Q Consensus 147 ~ 147 (151)
+
T Consensus 322 g 322 (357)
T 2e87_A 322 G 322 (357)
T ss_dssp T
T ss_pred C
Confidence 4
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=5.8e-20 Score=140.81 Aligned_cols=134 Identities=24% Similarity=0.270 Sum_probs=97.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCccceeeeeeEEEEECCeEEEEEEEeCCChh-ccccc--------cccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~~--------~~~~ 74 (151)
.++|+++|.++||||||+++|++.. ....+.+++.+.....+.+++ ..+.+|||||.. ++... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999864 355666666666677777776 468899999987 65432 1245
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc---ccCC-CCCCCceeccceeecc
Q 031880 75 YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ---FSSG-HPGATPITTSQVWVTN 147 (151)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~~~-~~~~~~~~~s~~~~~~ 147 (151)
++.+|++++|||++++.++... +. .+.+ .+.|+++|+||+|+.+... .... .....++++|+.++.+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~i-l~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KI-LERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HH-HHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHH-HH-HHHh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCC
Confidence 7889999999999988777664 33 3333 3789999999999965311 1000 1235678888887654
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=1.1e-18 Score=124.09 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=74.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC-CCCCCccc--eeeeeeEEEEECCeEEEEEEEeCCChhccccccc--------
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYIPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------- 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-------- 72 (151)
...++|+++|++|||||||+++|++.. +...+.++ +..........++ ..+.+|||||...+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 356899999999999999999999876 44444443 2222233444444 5688999999876643322
Q ss_pred ---ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEee-CCccccc
Q 031880 73 ---LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGT-KLDLRED 125 (151)
Q Consensus 73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~n-K~Dl~~~ 125 (151)
..++.+|++++|+|+++..... ..+...+.+.. ...|.++|+| |+|+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 2568899999999998522222 22223333322 1345555555 9999743
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=4.2e-21 Score=148.47 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=95.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee-eEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (151)
+..+|+++|++++|||||+++|.+..+...+.++....+ ...+... ....+.+|||||++.|..++...++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 567899999999999999999997655333333332222 2222221 22368899999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc--cC---------CC--CCCCceeccceeeccC
Q 031880 84 AFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF--SS---------GH--PGATPITTSQVWVTND 148 (151)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~---------~~--~~~~~~~~s~~~~~~~ 148 (151)
|+|+++....... ..|.. +.. .++|+++++||+|+.+.+.. .. +. ....++++|+..+.+.
T Consensus 82 VVDa~dg~~~qt~-e~l~~-~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQH-AKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHH-HHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEECCCCccHHHH-HHHHH-HHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 9999886655554 43333 222 37899999999999743211 10 11 1245788888877654
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=7.2e-19 Score=124.42 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=73.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc---eeeeeeEEEEECCeEEEEEEEeCCChh--------cccccc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT---VFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLR 71 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~ 71 (151)
....++|+++|.+|||||||++++++........++ +..........++ ..+.+|||||.. ++....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 456899999999999999999999987654332222 2122223344444 568899999963 222222
Q ss_pred cccc----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccc
Q 031880 72 PLSY----RGADVFLLAFSLISKASYENVYKKWIPELRHYA----PNVPIVLVGTKLDLRE 124 (151)
Q Consensus 72 ~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~ 124 (151)
..++ .++|++++|+|+++....+ ..+++.+.+.. .+.|++|++||.|+.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 2223 8999999999987532211 23333333322 3679999999999965
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.78 E-value=1.6e-18 Score=130.42 Aligned_cols=144 Identities=14% Similarity=0.022 Sum_probs=97.5
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--ccce-eee----eeEEEE---------E---CCeEEEEEEEeCC
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--IPTV-FDN----FSANVV---------V---DGSTVNLGLWDTA 62 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~--~~~~-~~~----~~~~~~---------~---~~~~~~~~i~d~~ 62 (151)
..+..++|+++|++++|||||+++|++....... ..+. ... ....+. . ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999975332210 0000 000 000000 0 1123789999999
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc----------C--
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS----------S-- 130 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~----------~-- 130 (151)
|+++|.......+..+|++++|+|+++..++... ..|+..+.... ..|+++|+||+|+.+..... .
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999988888888999999999999987666665 55666555442 35899999999987543211 0
Q ss_pred CCCCCCceeccceeecc
Q 031880 131 GHPGATPITTSQVWVTN 147 (151)
Q Consensus 131 ~~~~~~~~~~s~~~~~~ 147 (151)
......++++|+..+.+
T Consensus 162 ~~~~~~ii~vSA~~g~g 178 (403)
T 3sjy_A 162 WAENVPIIPVSALHKIN 178 (403)
T ss_dssp TTTTCCEEECBTTTTBS
T ss_pred CCCCCEEEEEECCCCcC
Confidence 12355688888887765
No 143
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=1.2e-19 Score=133.88 Aligned_cols=139 Identities=19% Similarity=0.162 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhc----ccccccccc---cCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~---~~~~ 79 (151)
+|+++|.++||||||+++|+..... ..+..++.......+.+++ ...+.+|||||..+ ++.+...++ +.++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 5889999999999999999976532 3333333222233344443 24688999999643 333333444 4599
Q ss_pred EEEEEEeCCC---hhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCccccccccc----CC-CCCCCceeccceeeccC
Q 031880 80 VFLLAFSLIS---KASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFS----SG-HPGATPITTSQVWVTND 148 (151)
Q Consensus 80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~----~~-~~~~~~~~~s~~~~~~~ 148 (151)
++++|+|+++ +.++..+ ..|..++..+. .+.|+++|+||+|+.+.++.. .. .....++++|+.++.+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL 317 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCH
Confidence 9999999998 7899998 88999998865 479999999999997543211 11 11256788888877653
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=9.7e-20 Score=139.04 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=83.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCC--------hhcccccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPL 73 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~ 73 (151)
|...+|+++|.+|||||||+++|++..+. ..+.++..+. ...........+.+||||| ++++......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~--~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR--IYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------C--EEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeE--EEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 44679999999999999999999986542 2222222222 2223344445788999999 6666667777
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccccCCC---CCCCceeccceeecc
Q 031880 74 SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSSGH---PGATPITTSQVWVTN 147 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~---~~~~~~~~s~~~~~~ 147 (151)
+++.+|++++|+|..+..+... ..+...+++ .+.|+++|+||+|+.+.+....+. ....++.+|+..+.+
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTT
T ss_pred hHhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccc
Confidence 8899999999999865433322 234444444 488999999999987554322221 122356777766543
No 145
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=3e-19 Score=132.15 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=62.7
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVYKKWIPELRHY--APNVPIVLVGTK 119 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK 119 (151)
..+.+++|||+|+++++..+..++++++++|+|||++ +..+|... ..|+..+.+. .++.|++|||||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 78899998 7777777653 368999999999
Q ss_pred Ccccccc
Q 031880 120 LDLREDK 126 (151)
Q Consensus 120 ~Dl~~~~ 126 (151)
+|+.+++
T Consensus 260 ~DL~~~k 266 (354)
T 2xtz_A 260 FDIFEKK 266 (354)
T ss_dssp HHHHHHH
T ss_pred cchhhhh
Confidence 9996543
No 146
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.78 E-value=6.6e-19 Score=128.84 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=60.7
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCC
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVYKKWIPELRHY--APNVPIVLVGTKL 120 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~ 120 (151)
.+.+++||++|+++++..|..++++++++|+|||++ +..++... ..|+..+... ..+.|++|+|||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence 478999999999999999999999999999999654 66778777 5566665543 2689999999999
Q ss_pred cccccc
Q 031880 121 DLREDK 126 (151)
Q Consensus 121 Dl~~~~ 126 (151)
|+.+.+
T Consensus 245 DL~~~k 250 (327)
T 3ohm_A 245 DLLEEK 250 (327)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 997654
No 147
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=8.9e-19 Score=137.06 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCC-----CCccce------eeee---eEEEEE---CCeEEEEEEEeC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYIPTV------FDNF---SANVVV---DGSTVNLGLWDT 61 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~--~~~~-----~~~~~~------~~~~---~~~~~~---~~~~~~~~i~d~ 61 (151)
|...+..+|+++|+.++|||||+++|+.. .+.. ....+. +.+. ...+.+ ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 44567889999999999999999999852 2111 111110 0011 112222 455689999999
Q ss_pred CChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc--c---CCCCCC-
Q 031880 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF--S---SGHPGA- 135 (151)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~---~~~~~~- 135 (151)
||+.+|.......++.+|++++|+|+++..+.... ..|...... ++|+++|+||+|+...+.. . .+..+.
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~~---~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVEQ---DLVIIPVINKIDLPSADVDRVKKQIEEVLGLD 156 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHC---CCCEEEEEeccCccccCHHHHHHHHHHhhCCC
Confidence 99999988888889999999999999998888777 777776654 8899999999999754311 0 111122
Q ss_pred --Cceeccceeecc
Q 031880 136 --TPITTSQVWVTN 147 (151)
Q Consensus 136 --~~~~~s~~~~~~ 147 (151)
.++.+|+.++.+
T Consensus 157 ~~~vi~vSAktg~G 170 (600)
T 2ywe_A 157 PEEAILASAKEGIG 170 (600)
T ss_dssp GGGCEECBTTTTBS
T ss_pred cccEEEEEeecCCC
Confidence 367888877654
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.77 E-value=3e-19 Score=137.19 Aligned_cols=145 Identities=13% Similarity=0.037 Sum_probs=90.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCc----------------------cc-----eeeee-eEEEEECCeE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYI----------------------PT-----VFDNF-SANVVVDGST 53 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~----------------------~~-----~~~~~-~~~~~~~~~~ 53 (151)
...+||+++|.+++|||||+++|+.... ...+. .+ .+.+. .....++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999999999985411 10000 00 00111 1122234445
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCcccccccc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----VYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF 128 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 128 (151)
+.+.+|||||+++|.......++.+|++++|+|+++..++.. ........+. .....|++||+||+|+.+.++.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH-HTTCCCEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH-HcCCCcEEEEEECcCcccchHH
Confidence 789999999999998888888999999999999998654322 1011122222 2223569999999999763221
Q ss_pred c-----C-----------CCCCCCceeccceeeccCC
Q 031880 129 S-----S-----------GHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 129 ~-----~-----------~~~~~~~~~~s~~~~~~~~ 149 (151)
. . ......++++|+..+.|.+
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 1 0 1114567899998887754
No 149
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=5e-19 Score=129.99 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=63.2
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVYKKWIPELRHY--APNVPIVLVGTK 119 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK 119 (151)
..+.+++||++|+++++..|..++++++++|+|||++ +..++... ..|+..+... ..+.|++|+|||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEEC
Confidence 4578999999999999999999999999999999998 77888888 5566655443 368999999999
Q ss_pred Cccccccc
Q 031880 120 LDLREDKQ 127 (151)
Q Consensus 120 ~Dl~~~~~ 127 (151)
+|+.+.+.
T Consensus 238 ~DL~~eki 245 (340)
T 4fid_A 238 MDLFEEKL 245 (340)
T ss_dssp HHHHHHHH
T ss_pred chhhhhhc
Confidence 99976443
No 150
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=134.19 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=76.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCc--------cceeeee-eEEEEECCeEEEEEEEeCCCh-------hc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYI--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------ED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~-------~~ 66 (151)
...++|+++|++|+|||||+++|+.. .+...+. ++..... ...+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 35689999999999999999997754 3333322 2222221 222333456678999999998 55
Q ss_pred cccccc-------ccccC-----------CcEEEEEEeCCC-hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc
Q 031880 67 YNRLRP-------LSYRG-----------ADVFLLAFSLIS-KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 67 ~~~~~~-------~~~~~-----------~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 127 (151)
+..... .+++. +++.+++|++++ ..++..+...|+..+. .++|+++|+||+|+...++
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH
Confidence 555543 33332 233346666654 5566666345555553 5899999999999976554
Q ss_pred cc---------CCCCCCCceeccceeecc
Q 031880 128 FS---------SGHPGATPITTSQVWVTN 147 (151)
Q Consensus 128 ~~---------~~~~~~~~~~~s~~~~~~ 147 (151)
+. ....++.++++|+..+.+
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 32 234567888999887765
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1.5e-18 Score=131.92 Aligned_cols=137 Identities=22% Similarity=0.150 Sum_probs=90.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc-----------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 71 (151)
..++|+++|++|||||||+++|++... ...+.+++.+.....+.+++. .+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998754 344445555555667777775 56799999975433221
Q ss_pred -cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc------------CCCCCCCce
Q 031880 72 -PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS------------SGHPGATPI 138 (151)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~------------~~~~~~~~~ 138 (151)
...++.++++++++|.++..+.... .+...+.+ .+.|+++|+||+|+.+.+... .......++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 1235679999999999876665543 33444443 378999999999997644311 122345678
Q ss_pred eccceeecc
Q 031880 139 TTSQVWVTN 147 (151)
Q Consensus 139 ~~s~~~~~~ 147 (151)
++|+..+.+
T Consensus 333 ~~SA~~g~g 341 (439)
T 1mky_A 333 FTSADKGWN 341 (439)
T ss_dssp ECBTTTTBS
T ss_pred EEECCCCCC
Confidence 888887754
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.9e-17 Score=124.84 Aligned_cols=141 Identities=17% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCcc--ceeeeee-EEEEE-------------C--C----eEEE
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYIP--TVFDNFS-ANVVV-------------D--G----STVN 55 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~ 55 (151)
|.....++|+++|+.++|||||+++|.+. .+..+..+ |....+. ..+.. . + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 34567899999999999999999999843 23222222 2222221 11111 1 1 1378
Q ss_pred EEEEeCCChhcccccccccccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc--
Q 031880 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-- 129 (151)
Q Consensus 56 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-- 129 (151)
+.+|||||+++|.......+..+|++++|+|+++ ++++..+ ..| .. ....|+++++||+|+.+.+...
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~-l~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL----EI-LGIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH----HH-TTCCCEEEEEECTTSSCTTTTTTH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH----HH-cCCCeEEEEEEccCCCCHHHHHHH
Confidence 9999999999988776667788999999999984 4555554 322 21 2235899999999997643211
Q ss_pred --------CC--CCCCCceeccceeecc
Q 031880 130 --------SG--HPGATPITTSQVWVTN 147 (151)
Q Consensus 130 --------~~--~~~~~~~~~s~~~~~~ 147 (151)
.. .....++++|+..+.+
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~g 184 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEAN 184 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------C
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCC
Confidence 11 2356678888887765
No 153
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.76 E-value=2.9e-19 Score=137.23 Aligned_cols=137 Identities=17% Similarity=0.170 Sum_probs=92.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCcccee-eeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (151)
++..+|+++|+.++|||||+++|....+.....+... ......+..++ ..+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4677999999999999999999987544322221111 11111222233 46889999999999999888899999999
Q ss_pred EEEeCCCh---hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc--ccccCCC---------C--CCCceeccceeec
Q 031880 83 LAFSLISK---ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED--KQFSSGH---------P--GATPITTSQVWVT 146 (151)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~---------~--~~~~~~~s~~~~~ 146 (151)
+|+|+++. ++...+ . .+.. .++|+++++||+|+.+. +.+..+. . ...++++|+..+.
T Consensus 80 LVVda~~g~~~qT~e~l----~-~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----Q-HAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----H-HHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----H-HHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999874 333332 2 2222 37899999999999743 2222111 1 1457888888877
Q ss_pred cCC
Q 031880 147 NDN 149 (151)
Q Consensus 147 ~~~ 149 (151)
+.+
T Consensus 153 gI~ 155 (501)
T 1zo1_I 153 GID 155 (501)
T ss_dssp TCT
T ss_pred Ccc
Confidence 643
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.75 E-value=1.2e-18 Score=136.46 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=92.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCC-----CCccce------eeee---eEEEEE---CCeEEEEEEEeCCCh
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPT-----DYIPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~--~~~-----~~~~~~------~~~~---~~~~~~---~~~~~~~~i~d~~g~ 64 (151)
.+..||+++|+.++|||||+++|+... +.. .+..+. +.+. ...+.+ ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 357899999999999999999998631 111 111110 0111 112222 455789999999999
Q ss_pred hcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc--c----C--CCCCCC
Q 031880 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF--S----S--GHPGAT 136 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~----~--~~~~~~ 136 (151)
.+|.......++.+|++++|+|+++..++... ..|...... ++|+++|+||+|+.+.+.. . . ......
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTT
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcce
Confidence 99998888889999999999999988777777 777776654 7899999999999753211 0 1 111224
Q ss_pred ceeccceeecc
Q 031880 137 PITTSQVWVTN 147 (151)
Q Consensus 137 ~~~~s~~~~~~ 147 (151)
++.+|+..+.+
T Consensus 158 vi~vSAktg~G 168 (599)
T 3cb4_D 158 AVRCSAKTGVG 168 (599)
T ss_dssp CEEECTTTCTT
T ss_pred EEEeecccCCC
Confidence 67888877654
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.75 E-value=1.2e-18 Score=124.95 Aligned_cols=141 Identities=14% Similarity=0.106 Sum_probs=77.8
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-------ccceeeee-eEEEEECCeEEEEEEEeCCChhcccc---
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-------IPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR--- 69 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~~-~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~--- 69 (151)
.+...++|+++|.+|+|||||+++|+.... ...+ .++..... ...+..++..+.+.+|||||...+..
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 345679999999999999999999876543 3333 33333222 23333455667999999999743211
Q ss_pred ----cc-------ccc-------------ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 70 ----LR-------PLS-------------YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 70 ----~~-------~~~-------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.. ..+ -.++|+++++++.+.. .+......+++.+.. ++|+++|+||+|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCH
Confidence 11 111 1247899999876542 222222445555655 7899999999998643
Q ss_pred ccccC---------CCCCCCceeccceeec
Q 031880 126 KQFSS---------GHPGATPITTSQVWVT 146 (151)
Q Consensus 126 ~~~~~---------~~~~~~~~~~s~~~~~ 146 (151)
.+... ...+..++++|+..+.
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDE 189 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCCh
Confidence 32211 1344556666655443
No 156
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=5.8e-18 Score=122.99 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=87.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChh---------ccccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~ 72 (151)
.+..+|+++|++|||||||+++|++..+. .....++.......+..+ ..++.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45668999999999999999999987652 122222222222233333 3678899999987 3444556
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc-cc------CCCCCC-Cceecccee
Q 031880 73 LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ-FS------SGHPGA-TPITTSQVW 144 (151)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~------~~~~~~-~~~~~s~~~ 144 (151)
..++.+|++++|+|.++ +......+...+.+ .+.|+++++||+|+...+. .. .+..+. .++.+|+..
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 67899999999999876 33331222333332 3789999999999976222 11 122232 467777755
Q ss_pred ec
Q 031880 145 VT 146 (151)
Q Consensus 145 ~~ 146 (151)
+.
T Consensus 159 g~ 160 (301)
T 1ega_A 159 GL 160 (301)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=1.7e-19 Score=136.96 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=92.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCcc---------------------------ceeeee-eEEEEEC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYIP---------------------------TVFDNF-SANVVVD 50 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~--~~~~~~~~---------------------------~~~~~~-~~~~~~~ 50 (151)
|.....++|+++|+.++|||||+++|+.. .+...... ..+.+. .....++
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 56678899999999999999999999864 33211000 000000 0111233
Q ss_pred CeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-----CCC-CEEEEeeCCcccc
Q 031880 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYA-----PNV-PIVLVGTKLDLRE 124 (151)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~-~iivv~nK~Dl~~ 124 (151)
...+.+.+|||||+++|.......+..+|++|+|+|+++ .+|+.. ..|.....+.. .+. |+++++||+|+.+
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 344679999999999998887788999999999999988 677654 22322222111 143 6899999999976
Q ss_pred cc-------cccC---------C--CCCCCceeccceeeccC
Q 031880 125 DK-------QFSS---------G--HPGATPITTSQVWVTND 148 (151)
Q Consensus 125 ~~-------~~~~---------~--~~~~~~~~~s~~~~~~~ 148 (151)
.. .+.. . .....++++|+..+.|.
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 20 0000 1 11356788888877654
No 158
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.75 E-value=7.1e-18 Score=126.35 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=65.4
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCCc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVYKKWIPELRHY--APNVPIVLVGTKLD 121 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D 121 (151)
+.+++|||+|+++++..|..++++++++|+|||+++ ..+|... ..|+..+... .+++|++|||||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 789999999999999999999999999999999999 8999998 8888887664 36899999999999
Q ss_pred cccccc
Q 031880 122 LREDKQ 127 (151)
Q Consensus 122 l~~~~~ 127 (151)
+.+.+.
T Consensus 296 L~~~ki 301 (402)
T 1azs_C 296 LLAEKV 301 (402)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 976543
No 159
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=2.7e-18 Score=127.01 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=62.3
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCC
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVYKKWIPELRHY--APNVPIVLVGTKL 120 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~ 120 (151)
.+.+++||++|++.++..|..++++++++|+|||+++ ..++... ..|+..+... ..+.|++|+|||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 4789999999999999999999999999999999998 5678888 6777776653 3689999999999
Q ss_pred ccccc
Q 031880 121 DLRED 125 (151)
Q Consensus 121 Dl~~~ 125 (151)
|+.+.
T Consensus 271 DL~~~ 275 (353)
T 1cip_A 271 DLFEE 275 (353)
T ss_dssp HHHHH
T ss_pred Cchhh
Confidence 99643
No 160
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=4.7e-18 Score=130.51 Aligned_cols=137 Identities=20% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCC-------CCCCCcc-ceeeeeeEEEEECCeEEEEEEEeCCChhcccccccc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYIP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL 73 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 73 (151)
..++.++|+++|+.++|||||+++|.+.. +..+..+ .+.+.....+.+++ ..+.+|||||+++|......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 45678999999999999999999999765 1111111 11111112333444 67899999999998877777
Q ss_pred cccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc-------C------CCCCCCc
Q 031880 74 SYRGADVFLLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS-------S------GHPGATP 137 (151)
Q Consensus 74 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-------~------~~~~~~~ 137 (151)
.+..+|++++|+|+++ +++...+ . .+.. .++|.++|+||+|+.+..... . ......+
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l-~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM-L----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH-H----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH-H----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 8899999999999987 4555554 2 2222 278889999999997532110 0 1124567
Q ss_pred eeccceeecc
Q 031880 138 ITTSQVWVTN 147 (151)
Q Consensus 138 ~~~s~~~~~~ 147 (151)
+++|+..+.|
T Consensus 166 i~vSA~~g~g 175 (482)
T 1wb1_A 166 IPISAKTGFG 175 (482)
T ss_dssp EECCTTTCTT
T ss_pred EEEECcCCCC
Confidence 8888877654
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.73 E-value=1.4e-18 Score=134.53 Aligned_cols=116 Identities=14% Similarity=0.063 Sum_probs=82.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-----------------CCCCccc---eeee-eeEEEEECCeEEEEEEEeCCC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-----------------PTDYIPT---VFDN-FSANVVVDGSTVNLGLWDTAG 63 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-----------------~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~d~~g 63 (151)
+..+|+++|++++|||||+++|+...- ...+.+. .+.+ ......+....+.+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 578999999999999999999972110 0000000 0001 111222233347899999999
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+.+|.......++.+|++|+|+|.++..+.... ..|...... ++|+++|+||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~~---~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRLR---HTPIMTFINKMDRDT 148 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHTT---TCCEEEEEECTTSCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCEEEEEeCCCCcc
Confidence 999998888899999999999999987777776 555443332 789999999999864
No 162
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=1.6e-17 Score=126.28 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=89.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------------ccceeeeeeEEEEECC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY------------------------------IPTVFDNFSANVVVDG 51 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~ 51 (151)
...++|+++|++++|||||+++|+... +.... ...+.+. ....+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~--~~~~~~~ 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEV--GRAYFET 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEE--eEEEEec
Confidence 457899999999999999999996431 11100 0001111 1112333
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhH---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCcccc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE---NVYKKWIPELRHYAPNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 124 (151)
....+.+|||||+++|.......++.+|++++|+|+++... |. .. ......+.. .++| +++++||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 44689999999999998888788899999999999987532 11 11 111122222 2667 999999999853
Q ss_pred cc-------cccC-------C-----CCCCCceeccceeeccCC
Q 031880 125 DK-------QFSS-------G-----HPGATPITTSQVWVTNDN 149 (151)
Q Consensus 125 ~~-------~~~~-------~-----~~~~~~~~~s~~~~~~~~ 149 (151)
.. .+.. . .....++++|+..+.|.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLK 213 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccc
Confidence 10 0000 0 014567889988887653
No 163
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.73 E-value=1.3e-17 Score=130.54 Aligned_cols=115 Identities=20% Similarity=0.190 Sum_probs=81.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----ccceeeeeeEE-------------EEECCeEEEEEEEeCCChh
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----IPTVFDNFSAN-------------VVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~i~d~~g~~ 65 (151)
.++..+|+++|++++|||||+++|++..+.... ..+....+... ...+.....+.+|||||++
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 356789999999999999999999875432211 11111111000 0000111258999999999
Q ss_pred cccccccccccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+|...+...++.+|++|+|+|+++ ++++..+ .. +.. .++|+++++||+|+..
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~----l~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NI----LRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HH----HHH--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HH----HHH--cCCeEEEEeccccccc
Confidence 999999888999999999999998 6776665 32 222 3789999999999964
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=5.9e-18 Score=129.26 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=91.3
Q ss_pred CC-CcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-------------------------------CccceeeeeeEE
Q 031880 1 MS-TARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-------------------------------YIPTVFDNFSAN 46 (151)
Q Consensus 1 m~-~~~~~ki~viG~~~~GKstli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~ 46 (151)
|. .+..++|+++|++++|||||+++|+.. .+... ...|.... .
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~-~-- 77 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA-L-- 77 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS-C--
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEE-E--
Confidence 54 456799999999999999999999864 22110 00011111 1
Q ss_pred EEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh---HHH---HHHHHHHHHHhhhCCCCC-EEEEeeC
Q 031880 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYE---NVYKKWIPELRHYAPNVP-IVLVGTK 119 (151)
Q Consensus 47 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iivv~nK 119 (151)
..+....+.+.+|||||+++|.......+..+|++|+|+|+++.. +|. .....+ ..+.. .++| +++|+||
T Consensus 78 ~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 78 WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH--TTCCEEEEEEEC
T ss_pred EEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH--cCCCeEEEEEEc
Confidence 123344568999999999999887778889999999999998653 231 221222 22222 2565 9999999
Q ss_pred Ccccc--ccc---cc-------CCC----CCCCceeccceeeccC
Q 031880 120 LDLRE--DKQ---FS-------SGH----PGATPITTSQVWVTND 148 (151)
Q Consensus 120 ~Dl~~--~~~---~~-------~~~----~~~~~~~~s~~~~~~~ 148 (151)
+|+.+ ... +. ... ....++++|+..+.|.
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 99973 111 10 001 1356888998887765
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.72 E-value=1.2e-17 Score=120.71 Aligned_cols=141 Identities=19% Similarity=0.183 Sum_probs=86.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC------Ccccee--------------------eee---------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YIPTVF--------------------DNF--------------- 43 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~------~~~~~~--------------------~~~--------------- 43 (151)
...+|+++|.++||||||+++|++..+.+. ..|+.. .+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999998876321 112100 000
Q ss_pred ---------eEEEEEC-CeEEEEEEEeCCChhc-------------ccccccccccCCcEEE-EEEeCCChhHHHHHHHH
Q 031880 44 ---------SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFL-LAFSLISKASYENVYKK 99 (151)
Q Consensus 44 ---------~~~~~~~-~~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 99 (151)
...+.+. .....+.+|||||... +......+++.++.++ +|+|.++..+.... ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 0001110 1125789999999642 3334445677888776 69998875444433 34
Q ss_pred HHHHHhhhCCCCCEEEEeeCCccccccccc----CC-C-----CCCCceeccceeeccC
Q 031880 100 WIPELRHYAPNVPIVLVGTKLDLREDKQFS----SG-H-----PGATPITTSQVWVTND 148 (151)
Q Consensus 100 ~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~----~~-~-----~~~~~~~~s~~~~~~~ 148 (151)
|...+.. .+.|+++|+||+|+.+.+... .. . ....++++|+..+.+.
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 5555543 378999999999997543311 11 1 1134678888776654
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=1.1e-16 Score=119.02 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=79.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeeeeEEEEECCeEEEEEEEeCCChh---------cccccccccccC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLSYRG 77 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~~~~ 77 (151)
.|+++|.+|+|||||+++|.+..+.. .+..++.+.....+.+++ ..+.+|||+|.- .|+... ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 39999999999999999999876532 233333444556677777 467899999962 233222 24688
Q ss_pred CcEEEEEEeCCChh--HHHHHHHHHHHHHhhhC-CCCCEEEEeeCCccccc
Q 031880 78 ADVFLLAFSLISKA--SYENVYKKWIPELRHYA-PNVPIVLVGTKLDLRED 125 (151)
Q Consensus 78 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~ 125 (151)
+|.+++|+|++++. +...+ ..|...+.... .+.|+++|+||+|+...
T Consensus 258 aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred CCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 99999999998876 55555 66777666654 57899999999998653
No 167
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.71 E-value=1e-17 Score=124.29 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=55.8
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhh--CCCCCEEEEeeCC
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVYKKWIPELRHY--APNVPIVLVGTKL 120 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~ 120 (151)
.+.+++|||+|++.++..|..++++++++|+|||+++ ..++... ..|+..+... ..+.|++|++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence 4789999999999999999999999999999999998 7899988 6677766543 3689999999999
Q ss_pred ccccc
Q 031880 121 DLRED 125 (151)
Q Consensus 121 Dl~~~ 125 (151)
|+.++
T Consensus 279 DL~~~ 283 (362)
T 1zcb_A 279 DLLEE 283 (362)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 99643
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.71 E-value=1.5e-16 Score=119.89 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=90.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCcc--ceeeeeeE-EEEE-------------C--C----eEEEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYIP--TVFDNFSA-NVVV-------------D--G----STVNLG 57 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 57 (151)
....++|+++|+.++|||||+++|.+. .+..+..+ |....+.. .+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 456799999999999999999999843 22222222 22222211 1111 0 1 137899
Q ss_pred EEeCCChhcccccccccccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccccccc-----
Q 031880 58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQF----- 128 (151)
Q Consensus 58 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----- 128 (151)
+|||||+++|.......+..+|++++|+|+++ +++...+ ..| ... ...|+++|+||+|+.+....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~~-~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL----QII-GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH----HHH-TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH----HHc-CCCcEEEEEECccCCCHHHHHHHHH
Confidence 99999999987766667788999999999984 4455554 322 221 23579999999999754321
Q ss_pred -----cCC--CCCCCceeccceeecc
Q 031880 129 -----SSG--HPGATPITTSQVWVTN 147 (151)
Q Consensus 129 -----~~~--~~~~~~~~~s~~~~~~ 147 (151)
... .....++++|+..+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~g 186 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGAN 186 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCC
Confidence 111 2356678888877654
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.5e-17 Score=128.69 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=89.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------------------------ccceeeeeeEEEEECC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------IPTVFDNFSANVVVDG 51 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 51 (151)
...+||+++|++++|||||+++|+.....-.. ...+.......+ ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence 45789999999999999999999965321110 011111112222 23
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh---HH---HHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SY---ENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
..+.+.+|||||+++|.......++.+|++|+|+|+++.. +| ... ......+.. ....|++||+||+|+.+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~-lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASS-LGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHT-TTCCEEEEEEECTTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHH-cCCCeEEEEEecccccch
Confidence 3467899999999999888888899999999999998642 11 011 111112222 122459999999999762
Q ss_pred cccc----------------CCCCCCCceeccceeeccCC
Q 031880 126 KQFS----------------SGHPGATPITTSQVWVTNDN 149 (151)
Q Consensus 126 ~~~~----------------~~~~~~~~~~~s~~~~~~~~ 149 (151)
++.. .......++++|+..+.|..
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~ 360 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 360 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTS
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcc
Confidence 2110 01114567888888877653
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.71 E-value=3.9e-17 Score=123.00 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=93.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--------CCCCCCc--c------ceeeee-eEEEEECCeEEEEEEEeCCChh
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN--------TFPTDYI--P------TVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~--------~~~~~~~--~------~~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 65 (151)
....++|+++|++++|||||+++|+.. .+. .+. . ..+.+. .....+......+.+|||||++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~-~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccccc-chhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 456799999999999999999999863 111 110 0 011111 1233344445678899999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccccccc-----------cCC--
Q 031880 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQF-----------SSG-- 131 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-----------~~~-- 131 (151)
+|.......+..+|++++|+|.++...... ..|+..+... ++| +++++||+|+.+.... ...
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998777778899999999999987654333 3444555443 778 8999999999742211 001
Q ss_pred --CCCCCceeccceeecc
Q 031880 132 --HPGATPITTSQVWVTN 147 (151)
Q Consensus 132 --~~~~~~~~~s~~~~~~ 147 (151)
.....++++|+..+.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 1235678888877754
No 171
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.71 E-value=2.4e-17 Score=133.68 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC--CCC------CCc----------cceeeee-eEEEE------------ECC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNT--FPT------DYI----------PTVFDNF-SANVV------------VDG 51 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~--~~~------~~~----------~~~~~~~-~~~~~------------~~~ 51 (151)
.++..||+++|+.++|||||+++|+... ... .+. .|..... ..... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998631 110 000 0111100 11111 134
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
..+.+++|||||+.+|...+..+++.+|++|+|+|+++..++... ..|...... ++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~---~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCeEEEEECCCcc
Confidence 478999999999999999888899999999999999998888876 667655543 78999999999986
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.70 E-value=4e-17 Score=126.46 Aligned_cols=118 Identities=16% Similarity=0.112 Sum_probs=79.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------ccce----------eeee-eEEEEECCeEEEEEEEeCC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------IPTV----------FDNF-SANVVVDGSTVNLGLWDTA 62 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~----------~~~~----------~~~~-~~~~~~~~~~~~~~i~d~~ 62 (151)
.+..+|+++|++++|||||+++|+...-.... ..+. +.+. .....+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 35789999999999999999999963110000 0000 0011 1112223334789999999
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
|+.+|.......++.+|++|+|+|.++...... ..+...+.. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 999998877788999999999999987543222 222333332 37899999999998653
No 173
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.70 E-value=6.3e-17 Score=121.58 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=90.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-------CCCCC--Cccc-e----eeee-eEEEEECCeEEEEEEEeCCChhcccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD--YIPT-V----FDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~-------~~~~~--~~~~-~----~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (151)
..+||+++|+.++|||||+++|+.. .+... .... . +.+. .....+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 11100 0000 0 0011 11223344456788999999999887
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccccccc-----------cCCC----C
Q 031880 70 LRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQF-----------SSGH----P 133 (151)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-----------~~~~----~ 133 (151)
.....++.+|++++|+|+++....... +.| ..+... ++| +++++||+|+.+.... .... .
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 777788999999999999875444433 333 333332 778 7899999999742211 0111 1
Q ss_pred CCCceeccceeecc
Q 031880 134 GATPITTSQVWVTN 147 (151)
Q Consensus 134 ~~~~~~~s~~~~~~ 147 (151)
...++++|+..+.|
T Consensus 158 ~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 158 ETPIIVGSALCALE 171 (397)
T ss_dssp TSCEEECCHHHHHT
T ss_pred cCcEEEeehhhccc
Confidence 35678898887654
No 174
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.5e-16 Score=120.79 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=90.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCCC----------Cccceee-------------------ee-eEEEEECC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YIPTVFD-------------------NF-SANVVVDG 51 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~--~~~~----------~~~~~~~-------------------~~-~~~~~~~~ 51 (151)
...++|+++|+.++|||||+++|+... +... ..++... +. .....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 356899999999999999999998643 1111 0111100 00 01112233
Q ss_pred eEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCC-CEEEEeeCCcccccc--c-
Q 031880 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNV-PIVLVGTKLDLREDK--Q- 127 (151)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~~~--~- 127 (151)
....+.+|||||+++|.......+..+|++++|+|+++...... ..++..+... +. |+++|+||+|+.+.. .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 44678999999999998777778899999999999987643322 2333333332 44 599999999997521 1
Q ss_pred --cc-------CCC----CCCCceeccceeeccCC
Q 031880 128 --FS-------SGH----PGATPITTSQVWVTNDN 149 (151)
Q Consensus 128 --~~-------~~~----~~~~~~~~s~~~~~~~~ 149 (151)
+. ... ....++++|+..+.|.+
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~ 212 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 212 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcc
Confidence 10 111 12567888888876643
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.69 E-value=1.6e-17 Score=127.16 Aligned_cols=118 Identities=18% Similarity=0.112 Sum_probs=66.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------C-------CccceeeeeeEEEEE
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D-------YIPTVFDNFSANVVV 49 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~--~~~~~------------------------~-------~~~~~~~~~~~~~~~ 49 (151)
....++|+++|+.++|||||+++|+. +.+.. + ...|.... ...+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEec
Confidence 45678999999999999999999974 22210 0 00010000 112222
Q ss_pred CCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhh-CCCCC-EEEEeeCCcccc
Q 031880 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYENVYKKWIPELRHY-APNVP-IVLVGTKLDLRE 124 (151)
Q Consensus 50 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~-~~~~~-iivv~nK~Dl~~ 124 (151)
+ ...+.+|||||+++|.......+..+|++|+|+|+++.. +|... ..|...+... ..++| ++|++||+|+..
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~-~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG-GQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTT-CCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCC-CcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 2 467899999999999888888889999999999998762 33211 1122211111 13677 999999999953
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.68 E-value=8.3e-17 Score=128.20 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=83.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCC------C------------CCccceeeeeeEEEEECCeEEEEEEEeCCC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN--TFP------T------------DYIPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 63 (151)
.+..+|+++|+.++|||||+++|+.. .+. . ....|... ....+..+ .+.+.+|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~-~~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA-AVTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C-CEEEEEET--TEEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc-ceEEEEEC--CeEEEEEECcC
Confidence 56889999999999999999999842 110 0 00111110 11122233 47899999999
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+.+|...+...++.+|++|+|+|.++..++... ..|...... ++|+++|+||+|+...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~~~~~---~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQAEKY---KVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHHHHHc---CCCEEEEEECCCcccC
Confidence 999988888889999999999999988877776 666654332 8999999999998753
No 177
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.68 E-value=9.2e-17 Score=127.97 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=83.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC------ccceeeeeeEEEEECCeEEEEEEEeCCC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------IPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~--~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~i~d~~g 63 (151)
..+..+|+++|++++|||||+++|+. +.+.. ++ ...+.......+..+ .+.+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 35688999999999999999999994 22210 00 000000011223333 47899999999
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+.+|.......++.+|++++|+|.++..++... ..|.. +.+. +.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHHc--CCCEEEEEECCCcccc
Confidence 999988888889999999999999988777776 55654 3332 8899999999998753
No 178
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=3.2e-17 Score=127.55 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=79.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCccceeeeeeEEEEECCe-----------------------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYIPTVFDNFSANVVVDGS----------------------------- 52 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~----------------------------- 52 (151)
...+|+++|.+|+|||||+|+|++..+. ....+++.. . ..+..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~-~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F-VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E-EEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E-EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 5689999999999999999999988763 222222210 0 00000000
Q ss_pred --E---------EEEEEEeCCChhc-----------ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCC
Q 031880 53 --T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPN 110 (151)
Q Consensus 53 --~---------~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 110 (151)
. ..+.+|||||... |......++..+|++++|+|.++....... ..|+..+.+. +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--C
Confidence 0 2588999999764 333444567889999999999875444444 5666666543 6
Q ss_pred CCEEEEeeCCccccccc
Q 031880 111 VPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 111 ~~iivv~nK~Dl~~~~~ 127 (151)
.|+++|+||+|+...++
T Consensus 219 ~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGEEEEEECGGGSCHHH
T ss_pred CCEEEEEECCCccCHHH
Confidence 78999999999875443
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=6.3e-16 Score=123.36 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=83.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------C-------ccceeeeeeEEEEE-----CCeEEEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------Y-------IPTVFDNFSANVVV-----DGSTVNLGL 58 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~--~~~~~-----------~-------~~~~~~~~~~~~~~-----~~~~~~~~i 58 (151)
.+..+|+++|+.++|||||+++|+.. .+... + ..|.... ...+.+ ++..+.+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence 56789999999999999999999853 11110 0 0011000 112222 223488999
Q ss_pred EeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 59 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
|||||+.+|.......++.+|++|+|+|.++....... ..|..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH---cCCCEEEEEeCCCcccc
Confidence 99999999988888889999999999999987666655 55544332 27899999999998653
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.66 E-value=4.4e-16 Score=124.14 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=81.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCcccee--------eeeeEEEEEC-Ce----------------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVF--------DNFSANVVVD-GS---------------------- 52 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~--------~~~~~~~~~~-~~---------------------- 52 (151)
..++|+++|.+++|||||+|+|++..+.+ ...+++. .......... +.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999876422 2222221 0000111110 00
Q ss_pred -----------------------E--EEEEEEeCCChhcc---cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHH
Q 031880 53 -----------------------T--VNLGLWDTAGQEDY---NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPEL 104 (151)
Q Consensus 53 -----------------------~--~~~~i~d~~g~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (151)
. ..+.+|||||.... ......+++.+|++++|+|.++..+.... ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 25889999997653 23444567899999999999988777776 6666555
Q ss_pred hhhCCCCCEEEEeeCCccccc
Q 031880 105 RHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 105 ~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.+. +.|+++|+||+|+...
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGG
T ss_pred Hhh--CCCEEEEEECcccccc
Confidence 543 6789999999998654
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.65 E-value=1.2e-16 Score=118.94 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (151)
+|+++|++++|||||+++|+. ...|... ....+....+.+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~---~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDI---TMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSS---EEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEe---eEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 999999999999999999981 1111111 112233344579999999999987766667899999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCE-EEEee-CCcc
Q 031880 88 ISKASYENVYKKWIPELRHYAPNVPI-VLVGT-KLDL 122 (151)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~Dl 122 (151)
+. ..+.+. ..+...+... ++|. ++++| |+|+
T Consensus 93 ~~-g~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 PQ-GLDAHT-GECIIALDLL--GFKHGIIALTRSDST 125 (370)
T ss_dssp TT-CCCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS
T ss_pred CC-CCcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC
Confidence 53 334444 4455555443 6777 88999 9999
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.64 E-value=1.1e-16 Score=125.52 Aligned_cols=139 Identities=19% Similarity=0.127 Sum_probs=74.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCCCC---------------------ccc------eeeee-eEEEEECCeE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY---------------------IPT------VFDNF-SANVVVDGST 53 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~--~~~~~---------------------~~~------~~~~~-~~~~~~~~~~ 53 (151)
...++|+++|++++|||||+++|+... ..... ... .+.+. .....+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 457899999999999999999997421 10000 000 00000 0111122234
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVYKKWIPELRHYAPNVP-IVLVGTKLDL 122 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl 122 (151)
..+.||||||+++|.......+..+|++|+|+|+++. ++...+ ..+... ++| ++||+||+|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl 327 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDL 327 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEecccc
Confidence 6789999999999988888889999999999998753 222222 222221 565 9999999999
Q ss_pred cccc--c-------ccC---CCC-----CCCceeccceeeccCC
Q 031880 123 REDK--Q-------FSS---GHP-----GATPITTSQVWVTNDN 149 (151)
Q Consensus 123 ~~~~--~-------~~~---~~~-----~~~~~~~s~~~~~~~~ 149 (151)
.+.. . +.. ... ...++.+|+..+.|..
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 6521 1 000 111 2357889998887754
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=4.1e-16 Score=115.74 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=83.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCcccee-e-------------e-e----------------------------
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVF-D-------------N-F---------------------------- 43 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~-~-------------~-~---------------------------- 43 (151)
..|+++|++|||||||+++|.+..+.+....+.. . . +
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999999776332221110 0 0 0
Q ss_pred ----------eEEEEE-CCeEEEEEEEeCCChhcc-------------cccccccccCCcEEEEEEeCCChhHHHHHHHH
Q 031880 44 ----------SANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFLLAFSLISKASYENVYKK 99 (151)
Q Consensus 44 ----------~~~~~~-~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 99 (151)
...+.+ ......+.+|||||..++ ......+++.++++++|++..+..... ..
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---SD 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---CH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---HH
Confidence 001111 111235889999998776 334456788999999999875433221 23
Q ss_pred HHHHHhhhC-CCCCEEEEeeCCccccccccc-------CCCCCCCceeccceee
Q 031880 100 WIPELRHYA-PNVPIVLVGTKLDLREDKQFS-------SGHPGATPITTSQVWV 145 (151)
Q Consensus 100 ~~~~~~~~~-~~~~iivv~nK~Dl~~~~~~~-------~~~~~~~~~~~s~~~~ 145 (151)
|...+.... .+.|+++|+||+|+.+.+... ....+..++.+++..+
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQ 245 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECCh
Confidence 334443333 368999999999987543321 1223345666665544
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.64 E-value=2.7e-16 Score=114.43 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=46.1
Q ss_pred EEEEEEeCCChhc-------------ccccccccccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031880 54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKA-SYENVYKKWIPELRHYAPNVPIVLVGTK 119 (151)
Q Consensus 54 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK 119 (151)
..+.+|||||..+ +......++..+|++++|+|.++.. .-... ..+...+.+ .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 4688999999753 3334455678999999999974322 11111 133334433 37899999999
Q ss_pred Cccccccc
Q 031880 120 LDLREDKQ 127 (151)
Q Consensus 120 ~Dl~~~~~ 127 (151)
+|+.+...
T Consensus 208 ~Dl~~~~~ 215 (315)
T 1jwy_B 208 LDLMDKGT 215 (315)
T ss_dssp TTSSCSSC
T ss_pred cccCCcch
Confidence 99865433
No 185
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=117.44 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=78.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCC-------ccceeeee-eEEEEECCeEEEEEEEeCCChhccc-------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDY-------IPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN------- 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~-~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~------- 68 (151)
-.++|+++|++|+|||||++.|++..+. ..+ .++..... ...+...+....+.+||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4578999999999999999999987653 211 11111111 1111112334578999999976531
Q ss_pred c------------------cccccccCCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc
Q 031880 69 R------------------LRPLSYRGADVFLLAFSLISK-ASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS 129 (151)
Q Consensus 69 ~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 129 (151)
. ....++.++++.+++|....- .++......|+..+.. +.|+++|+||+|+...+++.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHHHH
Confidence 1 123456677776777776543 4566663457776653 78999999999987654443
Q ss_pred C---------CCCCCCceeccceeecc
Q 031880 130 S---------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 130 ~---------~~~~~~~~~~s~~~~~~ 147 (151)
. ...++.++++|+....+
T Consensus 187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 187 QFKKQIMKEIQEHKIKIYEFPETDDEE 213 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCC------
T ss_pred HHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence 2 23456677777765544
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.62 E-value=7.4e-16 Score=126.92 Aligned_cols=140 Identities=19% Similarity=0.139 Sum_probs=90.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC-------CCC--CCc-----cceeeee-eEEEEECCeEEEEEEEeCCChhcc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSNT-------FPT--DYI-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~~-------~~~--~~~-----~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~ 67 (151)
....++|+++|+.++|||||+++|.... +.. ... .+.+.++ ...+.++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3467999999999999999999998631 100 000 0111111 112233444567899999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccccccc-----------cCC----
Q 031880 68 NRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVP-IVLVGTKLDLREDKQF-----------SSG---- 131 (151)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-----------~~~---- 131 (151)
.......+..+|++|+|+|+++....+.. .++..+... ++| ++|++||+|+.+.++. ...
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 87777788999999999999876433332 333444433 778 8999999999753221 001
Q ss_pred CCCCCceeccceeec
Q 031880 132 HPGATPITTSQVWVT 146 (151)
Q Consensus 132 ~~~~~~~~~s~~~~~ 146 (151)
.....++++|+..+.
T Consensus 449 ~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 449 GDDTPIVRGSALKAL 463 (1289)
T ss_dssp TTTCCEEECCSTTTT
T ss_pred ccceeEEEEEeccCC
Confidence 123567888888774
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=3.3e-15 Score=112.16 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEE--E-------------------EECC-eEEEEEEEeCCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSAN--V-------------------VVDG-STVNLGLWDTAG 63 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~d~~g 63 (151)
++|+++|.++||||||+++|++.... ..+..++....... + .+++ ..+++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987632 23322222111111 1 1222 247899999999
Q ss_pred hhc----cccccc---ccccCCcEEEEEEeCCCh
Q 031880 64 QED----YNRLRP---LSYRGADVFLLAFSLISK 90 (151)
Q Consensus 64 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 90 (151)
..+ .+.... ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222222 346899999999999874
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=1.2e-15 Score=104.68 Aligned_cols=114 Identities=15% Similarity=0.052 Sum_probs=68.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhc----------cccccc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRLRP 72 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 72 (151)
....+|+++|++|||||||++++++..+...+.++.+.... ..+..++ .+.+|||||... ++....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 45679999999999999999999987654443444433332 2233333 467999999742 222222
Q ss_pred ccc---cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 73 LSY---RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 73 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
.++ ..++++++++|+++..++... .....+.. .+.|+++++||+|+..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCC
Confidence 233 568999999999876554321 12222222 2789999999999854
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.60 E-value=3.4e-17 Score=118.95 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChh-HHHHHHH
Q 031880 21 CMLISYTSNTFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVYK 98 (151)
Q Consensus 21 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 98 (151)
+|+.+++.+.|. ..+.||.++.+...+..++ .+.+||+ +++++.++..+++++|++++|||++++. ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 688888888888 7888998876654432222 6889999 8999999999999999999999999987 78877 8
Q ss_pred HHHHHHhhhCCCCCEEEEeeCCccccccccc-----CCCCC--CCceeccceeeccC
Q 031880 99 KWIPELRHYAPNVPIVLVGTKLDLREDKQFS-----SGHPG--ATPITTSQVWVTND 148 (151)
Q Consensus 99 ~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-----~~~~~--~~~~~~s~~~~~~~ 148 (151)
.|+..++. .++|+++|+||+|+.+.+.+. .+... ..++++|+.++.+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv 160 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGI 160 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCH
Confidence 89988766 489999999999997655421 01111 67899999887653
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.59 E-value=3.6e-15 Score=118.41 Aligned_cols=116 Identities=19% Similarity=0.086 Sum_probs=81.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc----------------eeeee-eEEEEECCeEEEEEEEeCCChhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT----------------VFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (151)
.+..+|+++|+.|+|||||+++|+..........+ ....+ .....+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45679999999999999999999943321111000 01111 22223333457899999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 67 YNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
|.......++.+|++++|+|.++....... .+...+.+. ++|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888889999999999998766544443 334444432 78999999999986
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=2.8e-16 Score=114.11 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=69.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCc--------cceeeee-eEEEEECCeEEEEEEEeCCCh-------hcc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYI--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY 67 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~-------~~~ 67 (151)
..++|+++|++|+|||||++++++. .++.... ++..... .......+....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998865 4433221 1111111 111222344578999999997 444
Q ss_pred ccccc-------cccc-------------CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc
Q 031880 68 NRLRP-------LSYR-------------GADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ 127 (151)
Q Consensus 68 ~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 127 (151)
+.... .+++ .+++++++.+.+ ..+++.+.. ..+.+...+.++++|+||+|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 43332 2221 233344433322 224555422 33444445789999999999975443
Q ss_pred cc---------CCCCCCCceeccceeeccC
Q 031880 128 FS---------SGHPGATPITTSQVWVTND 148 (151)
Q Consensus 128 ~~---------~~~~~~~~~~~s~~~~~~~ 148 (151)
+. ....++.++++|+.++ +.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DE 201 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cc
Confidence 21 1334678899998877 54
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=5.7e-14 Score=109.31 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=83.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-----------------CCCCccce---eee-eeEEEEECCeEEEEEEEeCCC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-----------------PTDYIPTV---FDN-FSANVVVDGSTVNLGLWDTAG 63 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-----------------~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~d~~g 63 (151)
+.=+|+|+|+.++|||||..+|+...- ..++.+-. +-+ ....+.+....++++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 566899999999999999999973110 00000000 001 111222333457899999999
Q ss_pred hhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+.+|.....+.++-+|++|+|+|....-.-+.. ..|....+. ++|.+++.||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh---CCceEEEEecccchh
Confidence 999999988999999999999999877666665 667665555 899999999999754
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.51 E-value=6e-14 Score=105.76 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=89.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhcc----ccccccc---ccCCc
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 79 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~~---~~~~~ 79 (151)
.|+++|++|||||||++++.+... ...+..++.......+..++ ...+.+||+||..+. ......+ ...++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999997642 12222222222222333443 246789999997432 2222222 35799
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCccccccccc---C--CCCCCCceeccceeecc
Q 031880 80 VFLLAFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLREDKQFS---S--GHPGATPITTSQVWVTN 147 (151)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~~~~~~~---~--~~~~~~~~~~s~~~~~~ 147 (151)
.++.++|++ ...+..+ ..|..++..+. ...|.++|+||+|+....... . ...+..++.+|+..+.+
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 999999998 6677777 77777776654 267999999999987542111 1 13355678888776654
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.50 E-value=4.8e-14 Score=104.37 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=68.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC------cccee--------------------eee---------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------IPTVF--------------------DNF--------------- 43 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~--------------- 43 (151)
...+|+++|.++||||||+++|++..+.+.. .|+.. .++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999988763221 12100 000
Q ss_pred ---------eEEEEEC-CeEEEEEEEeCCChhc-------------ccccccccccCCcEEEE-EEeCCChhHHHHHHHH
Q 031880 44 ---------SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFLL-AFSLISKASYENVYKK 99 (151)
Q Consensus 44 ---------~~~~~~~-~~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~ 99 (151)
...+.+. .....+.+|||||... +..+...++..++.+++ +.+.+....-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 0011111 1135689999999642 23344445656665555 4555432111111 12
Q ss_pred HHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 100 WIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 100 ~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
+...+.. .+.|+++|+||+|+.+.
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCT
T ss_pred HHHHhCc--CCCceEEEeccccccCc
Confidence 3344433 37899999999999654
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=1.8e-13 Score=101.38 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=55.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCccceeeeeeEEEEECCe---------------EEEEEEEeCCChhccc--
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN-- 68 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~-- 68 (151)
++|+++|.+|||||||+++|.+..+. ..+..++.......+.+.+. ...+++|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986642 23322222211223333332 1578999999987653
Q ss_pred --ccccc---cccCCcEEEEEEeCCC
Q 031880 69 --RLRPL---SYRGADVFLLAFSLIS 89 (151)
Q Consensus 69 --~~~~~---~~~~~~~~i~v~d~~~ 89 (151)
.+... .++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23222 3689999999999975
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.43 E-value=4.7e-13 Score=107.06 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=82.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--------CCCC--CCccceeeeee---------EEEEEC-----CeEEEEEEE
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN--------TFPT--DYIPTVFDNFS---------ANVVVD-----GSTVNLGLW 59 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~--------~~~~--~~~~~~~~~~~---------~~~~~~-----~~~~~~~i~ 59 (151)
++.=||+|+|+.++|||||..+|+.. .... .+..+...... ..+.+. ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 35669999999999999999998731 1110 11111111111 122222 236899999
Q ss_pred eCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 60 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
||||+-+|.....+.++-+|++|+|+|+...-.-+.. ..|....+. ++|.+++.||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEcccccc
Confidence 9999999999888999999999999999877666665 667776666 89999999999964
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.5e-12 Score=96.92 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=78.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECCeEEEEEEEeCCChhccccc-------cccccc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYR 76 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~ 76 (151)
...+|+++|.|+||||||+|+|.+... ..++..++.+.....+.+.+ .++++.||||.-+.... .-..++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999997543 35566666665566677777 46789999996432211 112357
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC---CCCCEEEEeeCCccc
Q 031880 77 GADVFLLAFSLISKASYENVYKKWIPELRHYA---PNVPIVLVGTKLDLR 123 (151)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~Dl~ 123 (151)
.+|++++|.|.+++..-. +.+..++.... ...|.+++.||.|..
T Consensus 149 ~ad~il~vvD~~~p~~~~---~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHK---QIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSHHHHH---HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCccHHHH---HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 899999999998864332 22333443322 357888999999964
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.33 E-value=7.3e-14 Score=110.50 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=82.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc--CCCCC----CCccce----------eeee-eEEEEECCeEEEEEEEeCCChhccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPT----DYIPTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~--~~~~~----~~~~~~----------~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (151)
.-||+|+|+.++|||||..+|+. +.... ....+. +-+. ...+.+....++++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 45799999999999999999973 21110 000000 0011 1222334455789999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 69 RLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
....+.++-+|++|+|+|....-.-+.. ..|....+. ++|.+++.||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence 9888899999999999999876555554 566665555 889999999999753
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=96.60 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=48.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-CccceeeeeeEEEEECCe---------------EEEEEEEeCCChhcccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR 69 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~~ 69 (151)
.++|+++|.+|||||||+++|.+..+... +..++.......+.+.+. ...+.+|||||..++..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 46899999999999999999998755322 222222222233333332 23589999999876543
Q ss_pred -------cccccccCCcEEEEEEeCCChhHH
Q 031880 70 -------LRPLSYRGADVFLLAFSLISKASY 93 (151)
Q Consensus 70 -------~~~~~~~~~~~~i~v~d~~~~~s~ 93 (151)
.+...++.+|++++|+|+.+..++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 223457899999999999865443
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.25 E-value=1.8e-12 Score=89.48 Aligned_cols=132 Identities=16% Similarity=0.059 Sum_probs=73.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeee------------e-EEEEEC------------------CeE
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNF------------S-ANVVVD------------------GST 53 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------~-~~~~~~------------------~~~ 53 (151)
+..+|+++|.+|||||||+++|+................ . ....++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 467999999999999999999986421111111100000 0 001111 123
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccc--cc--
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQ--FS-- 129 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~-- 129 (151)
+.+.+|||+|.-.... .+....+.+++|+|+.+... .. ..+.... +.|.++|+||+|+.+.+. ..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~-~~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV-EKHPEIF-----RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH-HHCHHHH-----HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh-hhhhhhh-----hcCCEEEEecccCCcchhhHHHHH
Confidence 5677999998511111 11125688999999865432 11 1111111 568899999999865321 11
Q ss_pred -C----CCCCCCceeccceeecc
Q 031880 130 -S----GHPGATPITTSQVWVTN 147 (151)
Q Consensus 130 -~----~~~~~~~~~~s~~~~~~ 147 (151)
. ......++++|+..+.+
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~g 200 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKG 200 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBT
T ss_pred HHHHHHhCCCCeEEEeecCCCCC
Confidence 0 12245678888876654
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.24 E-value=5.1e-14 Score=97.68 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=28.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCcccee
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVF 40 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~ 40 (151)
+..+|+++|.+|||||||+++|+...+...+.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA 72 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence 568999999999999999999997655444444443
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.22 E-value=8.1e-11 Score=94.29 Aligned_cols=117 Identities=20% Similarity=0.169 Sum_probs=70.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCccceeeee-----------------------------------------
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYIPTVFDNF----------------------------------------- 43 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~----------------------------------------- 43 (151)
..+|+|+|..++|||||+++|++..+-+ ....++....
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 4589999999999999999999876621 1111110000
Q ss_pred --------eEEEEE-CCeEEEEEEEeCCChhccc-------------ccccccc-cCCcEEEEEEeCCChhHHHHHHHHH
Q 031880 44 --------SANVVV-DGSTVNLGLWDTAGQEDYN-------------RLRPLSY-RGADVFLLAFSLISKASYENVYKKW 100 (151)
Q Consensus 44 --------~~~~~~-~~~~~~~~i~d~~g~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~ 100 (151)
...+.+ ......+.++||||..... .....++ ..+|.+++|.|.+....-... ..+
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKI 209 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HHH
Confidence 001111 0112247799999965411 1112222 678999999998764322222 234
Q ss_pred HHHHhhhCCCCCEEEEeeCCccccc
Q 031880 101 IPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 101 ~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
...+... +.|+++|.||+|+.+.
T Consensus 210 l~~L~~~--g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQ--GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTT--CSSEEEEEECTTSSCT
T ss_pred HHHHHhc--CCCEEEEEeCcccCCc
Confidence 4444432 7899999999998654
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.21 E-value=2.5e-12 Score=95.28 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=53.0
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc---
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS--- 129 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~--- 129 (151)
.+.+.+|||||..... ...+..+|.+++|+|......+..+ . ....+.|+++|+||+|+.+.....
T Consensus 171 ~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhHHHHHH
Confidence 3678899999954321 2235889999999998765444332 1 111245899999999986432211
Q ss_pred ----C---------CCCCCCceeccceeecc
Q 031880 130 ----S---------GHPGATPITTSQVWVTN 147 (151)
Q Consensus 130 ----~---------~~~~~~~~~~s~~~~~~ 147 (151)
. ...+...+.+|+.++.+
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 0 02245678888877654
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.19 E-value=5.9e-11 Score=88.20 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=54.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCccceeeeeeEEEEECC-------------------eEEEEEEEeCCChhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYIPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED 66 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~d~~g~~~ 66 (151)
++|+++|.+|||||||+++|.+... ..++..++.........+.+ ....+++|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997542 22332222111111122221 235789999999876
Q ss_pred ccc----ccc---ccccCCcEEEEEEeCCC
Q 031880 67 YNR----LRP---LSYRGADVFLLAFSLIS 89 (151)
Q Consensus 67 ~~~----~~~---~~~~~~~~~i~v~d~~~ 89 (151)
+.. +.. ..++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 211 23689999999999975
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.12 E-value=1.3e-10 Score=82.20 Aligned_cols=70 Identities=14% Similarity=-0.032 Sum_probs=41.2
Q ss_pred EEEEEEeCCChhccccccc------ccccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFLLAFSLIS---KASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+.+.+|||||..++..... ..+.. +++++++|... ...+............+ .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 5788999999876543221 13355 78888887643 23332221111111111 2689999999999875
Q ss_pred cc
Q 031880 125 DK 126 (151)
Q Consensus 125 ~~ 126 (151)
.+
T Consensus 186 ~~ 187 (262)
T 1yrb_A 186 EE 187 (262)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.11 E-value=5.4e-12 Score=93.27 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=35.8
Q ss_pred EEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
+.+.++||+|..... ......+|.+++|+|.+.......+ .. .+ -..|.++|+||+|+.+
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCC
Confidence 567899999964221 2345789999999998765432222 11 11 1457899999999864
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.01 E-value=4.2e-11 Score=88.22 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=39.1
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.+.+.+|||||...+... ....+|++++|+|.+....+..+ .. .. .+.|.++|+||+|+.+.
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCCh
Confidence 357889999996554332 35789999999998755332211 11 11 14578999999998653
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.92 E-value=6.2e-10 Score=80.72 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=63.1
Q ss_pred hhcccccccccccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccccccc--------CCCCC
Q 031880 64 QEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFS--------SGHPG 134 (151)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~--------~~~~~ 134 (151)
++++..+.+.++.++|++++|||++++. ++..+ +.|+..+.. .++|+++|+||+|+.+.+.+. ....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6777778888899999999999999886 88887 888887776 489999999999997554211 11235
Q ss_pred CCceeccceeecc
Q 031880 135 ATPITTSQVWVTN 147 (151)
Q Consensus 135 ~~~~~~s~~~~~~ 147 (151)
..++++|+.++.+
T Consensus 143 ~~~~~~SA~~g~g 155 (302)
T 2yv5_A 143 YDVLKVSAKTGEG 155 (302)
T ss_dssp CEEEECCTTTCTT
T ss_pred CeEEEEECCCCCC
Confidence 5778898887654
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=3.2e-09 Score=79.48 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=56.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCccceeeeeeEEEEECCe---------------EEEEEEEeCCChhccc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTF-P-TDYIPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~ 68 (151)
..+|.++|.+|||||||+++|.+... . ..+..++.......+.+.+. ...+.+||+||.....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999998654 2 33333333333444555441 1358899999965432
Q ss_pred c-------cccccccCCcEEEEEEeCCC
Q 031880 69 R-------LRPLSYRGADVFLLAFSLIS 89 (151)
Q Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~ 89 (151)
. .....++.+|+++.|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 12223578999999999863
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=7.2e-08 Score=72.79 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=59.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccc--eeeee-eEEEEEC--CeEEEEEEEeCCChhccc-----------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPT--VFDNF-SANVVVD--GSTVNLGLWDTAGQEDYN----------- 68 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~--~~~~~-~~~~~~~--~~~~~~~i~d~~g~~~~~----------- 68 (151)
..++++++|++|+|||||++.+++..+.+..... ..... ...+..+ +....+.++|++|.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999999986542211110 11111 1122222 223468899998743210
Q ss_pred ---ccc----cc---------cccCC--cE-EEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 69 ---RLR----PL---------SYRGA--DV-FLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 69 ---~~~----~~---------~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
..+ .. ...++ |+ ++++.|....-+-.. ..++..+. .+.|+|+|.||+|.-.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~---~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD---SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC---SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh---hCCCEEEEEcchhccc
Confidence 000 00 11222 33 555566543322222 23344443 4889999999999643
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.78 E-value=2.5e-08 Score=71.15 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=61.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--------CccceeeeeeEEEEECC--eEEEEEEEeCCChhcccc------
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YIPTVFDNFSANVVVDG--STVNLGLWDTAGQEDYNR------ 69 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~i~d~~g~~~~~~------ 69 (151)
.++++++|++|+|||||++.+++...+.. ..+.........+..+. ....+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 57999999999999999999996422111 00000000011111122 223678999987422100
Q ss_pred ---------------------c-ccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccc
Q 031880 70 ---------------------L-RPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRE 124 (151)
Q Consensus 70 ---------------------~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 124 (151)
. -...+..+++.+++.|-.. ..+..+....+..+.+ ..++++|.+|.|.-.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCC
Confidence 0 0112345688888888431 1122221234445544 389999999999653
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=1.2e-09 Score=81.35 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=62.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC------CCC-CCCccceeeeeeEEEEECCeEEEEEEEeCCChhcccccc----cc--
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN------TFP-TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PL-- 73 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~-- 73 (151)
.+|+++|.+|+|||||+|+|++. ... .....++.. .....+... +.++||||........ ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 111 111111111 112333332 6799999964332111 11
Q ss_pred --cc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 74 --SY--RGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 74 --~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
++ +..+.++++.+......+..+ . .++.+.. .+.|++++.||.|..+.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCccccc
Confidence 11 667889999887322111111 1 0111221 36799999999997543
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.64 E-value=1.9e-09 Score=80.21 Aligned_cols=112 Identities=9% Similarity=0.027 Sum_probs=61.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-----CCccceeeee-eEEEEECCeEEEEEEEeCCChhccccccc----c---
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-----DYIPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRP----L--- 73 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~----~--- 73 (151)
.+|+++|.+|+|||||+|++++..... ........+. .....+.+. +.++||||......... .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999999752111 0011111111 122223332 77999999644332111 1
Q ss_pred ---cccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 74 ---SYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 74 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
..+..+.++++++......+..+ ..++.+.. .+.|+++++||.|..+.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccc
Confidence 13567888888876321111111 01111221 36799999999997543
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.63 E-value=2.4e-09 Score=78.78 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=35.2
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
.+.+.++||+|...... .....+|.+++++|.........+ .... . ..+.+++.||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i-~~~i---~----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI-KKGI---F----ELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C-CTTH---H----HHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH-HHHH---h----ccccEEEEEchhcc
Confidence 35688999999754321 234689999999997644322111 1111 1 23557777999964
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.61 E-value=4.4e-08 Score=70.32 Aligned_cols=58 Identities=24% Similarity=0.249 Sum_probs=35.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCccceeeeeeEEEEECCeEEEEEEEeCCChhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYIPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 66 (151)
...++++++|.+|||||||+|+|.+.... .....++... ..+.... .+.+|||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcCC
Confidence 35689999999999999999999976532 1111111111 1222222 477999999643
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.58 E-value=2.5e-08 Score=70.87 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=34.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-EEEEECCeEEEEEEEeCCChhcc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (151)
++++++|.+|+|||||+|+|.+..... ..++.+.+.. ..+..+. .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 589999999999999999999765421 1122222111 1222222 4779999997543
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.42 E-value=1.6e-07 Score=72.37 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=61.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHh------cCCC---C-CCCcccee-------eeeeEEEEE------------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYT------SNTF---P-TDYIPTVF-------DNFSANVVV------------------ 49 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~------~~~~---~-~~~~~~~~-------~~~~~~~~~------------------ 49 (151)
....|+++|.+||||||++++|. +.+. . ..+.+... ......+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 2211 0 00111100 000000000
Q ss_pred CCeEEEEEEEeCCChhcccc-ccc---cc--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCE-EEEeeCCcc
Q 031880 50 DGSTVNLGLWDTAGQEDYNR-LRP---LS--YRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPI-VLVGTKLDL 122 (151)
Q Consensus 50 ~~~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl 122 (151)
....+.+.|+||||...... ... .. +-.+|.+++|+|......... ....+.+ ..|+ .+|.||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence 00346788999999653211 110 01 226899999999876533111 1223332 2565 889999997
Q ss_pred cc
Q 031880 123 RE 124 (151)
Q Consensus 123 ~~ 124 (151)
..
T Consensus 253 ~~ 254 (504)
T 2j37_W 253 HA 254 (504)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.41 E-value=3.4e-07 Score=71.75 Aligned_cols=63 Identities=21% Similarity=0.116 Sum_probs=39.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeeeee-E---EEEE-CCeEEEEEEEeCCChhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDNFS-A---NVVV-DGSTVNLGLWDTAGQED 66 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~---~~~~-~~~~~~~~i~d~~g~~~ 66 (151)
.....|+|+|.+++|||||+|+|++....-...++...... . .... ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 35688999999999999999999986532122222211111 1 1111 12234678999999754
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.28 E-value=5.2e-06 Score=62.55 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=58.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCccce-e--eeeeEEEEECCeEEEEEEEeCCChhcccccccc-----cccC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTV-F--DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-----SYRG 77 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-----~~~~ 77 (151)
...++++|++|+|||||++.+.+...+..-.-.. . ......+......-.+.+||++|....+..... -+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4579999999999999999999743211100000 0 000111111211114779999986432111111 1334
Q ss_pred CcEEEEEEeCC--ChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 031880 78 ADVFLLAFSLI--SKASYENVYKKWIPELRHYAPNVPIVLVGTKLDL 122 (151)
Q Consensus 78 ~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 122 (151)
.+..++ ++.. .+... .+...+.+. +.|+++|.||.|+
T Consensus 149 ~~~~~~-lS~G~~~kqrv-----~la~aL~~~--~~p~~lV~tkpdl 187 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI-----DIAKAISMM--KKEFYFVRTKVDS 187 (413)
T ss_dssp CSEEEE-EESSCCCHHHH-----HHHHHHHHT--TCEEEEEECCHHH
T ss_pred cCCeEE-eCCCCccHHHH-----HHHHHHHhc--CCCeEEEEecCcc
Confidence 455554 7765 22221 223333332 6799999999986
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.28 E-value=2.2e-07 Score=63.70 Aligned_cols=61 Identities=7% Similarity=-0.017 Sum_probs=39.8
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHH---HHHHhhh--CCCCCEEEEeeCC-cccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKW---IPELRHY--APNVPIVLVGTKL-DLRE 124 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~~iivv~nK~-Dl~~ 124 (151)
|++..+..|..||.++|++|+|+|.+|+..+. ....+ ...+.+. ..+.|++|++||. |++.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 78899999999999999999999998875443 21333 2333332 2578999999995 6753
No 221
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.11 E-value=9.4e-08 Score=73.14 Aligned_cols=98 Identities=14% Similarity=-0.007 Sum_probs=58.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCccceeee---eeEEEEECCeEEEEEEEeCCChhcc--cccc--------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYIPTVFDN---FSANVVVDGSTVNLGLWDTAGQEDY--NRLR-------- 71 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~-------- 71 (151)
..++|+++|.+|+||||++++|...-.. ...++.... +... ..+......+||..|.+.+ +..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~--~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRD--MVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHH--HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhh--hccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998853110 011111100 0000 0111133468898887332 3222
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh
Q 031880 72 PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHY 107 (151)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (151)
..++...++.++|+|.++. +.... ..|...+.+.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc
Confidence 3345567888999999877 45555 6777777654
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.01 E-value=6.6e-06 Score=62.36 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=38.2
Q ss_pred EEEEEEEeCCChhcccc-----cc-cccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCccc
Q 031880 53 TVNLGLWDTAGQEDYNR-----LR-PLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNV-P-IVLVGTKLDLR 123 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-iivv~nK~Dl~ 123 (151)
.+.+.|+||||...... +. ...+..++.+++|.|..... +.. .....+. ... | ..+|.||.|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~--~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAG--IQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHH--HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHH--HHHHHHh---hcccCCeEEEEeCCCCc
Confidence 35678999999643211 10 11123689999999986543 221 1223332 245 5 78999999975
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.97 E-value=9.9e-06 Score=63.92 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.|+++|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
No 224
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.96 E-value=2.4e-06 Score=63.44 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=46.5
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
..++|+.....+.+.++++++|+|+++.. ..|...+.+...+.|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 45788888888888999999999998752 5677777777778999999999999643
No 225
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.93 E-value=3.3e-06 Score=60.61 Aligned_cols=63 Identities=6% Similarity=-0.064 Sum_probs=44.0
Q ss_pred CChhcccccccccccCCcEEEEEEeCCChhHHHHHH--HHHHHHHhhh--CCCCCEEEEeeC-Ccccc
Q 031880 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVY--KKWIPELRHY--APNVPIVLVGTK-LDLRE 124 (151)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~--~~~~~iivv~nK-~Dl~~ 124 (151)
.|++..+..|..++.++|++|+|+|.+|++.+.... ..+...+.+. ..+.|++|++|| .|++.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 477888999999999999999999999886543210 2222333221 358999999997 57754
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.84 E-value=4.7e-05 Score=57.77 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=61.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCccce-------eeeeeEEEEEC-----------------
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS------NTF----PTDYIPTV-------FDNFSANVVVD----------------- 50 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~------~~~----~~~~~~~~-------~~~~~~~~~~~----------------- 50 (151)
+...|+++|.+||||||++..|.. .+. ...+.+.. .......+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999987763 111 00111110 00000111110
Q ss_pred -CeEEEEEEEeCCChhccccccc------ccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 031880 51 -GSTVNLGLWDTAGQEDYNRLRP------LSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLR 123 (151)
Q Consensus 51 -~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 123 (151)
...+.+.|+||+|........- .....+|.+++|.|.......... ...+.+. -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 0126788999999432221100 112357899999998754332222 2333332 23457899999975
Q ss_pred c
Q 031880 124 E 124 (151)
Q Consensus 124 ~ 124 (151)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 4
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.68 E-value=2.3e-05 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988753
No 228
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.66 E-value=2.6e-05 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|.......|+++|++|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5555667899999999999999988775
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.66 E-value=2.7e-05 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.65 E-value=2.6e-05 Score=52.65 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
|+-+....|+++|++||||||+++.+...-
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 545555679999999999999999988653
No 231
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.64 E-value=3e-05 Score=51.79 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
|+.++..+|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55566778999999999999999988754
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=3.4e-05 Score=52.41 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.+..--|+++|++|||||||+++|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344456899999999999999999853
No 233
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.60 E-value=4.9e-05 Score=50.61 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+......|++.|.+||||||+++.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 6666667899999999999999998874
No 234
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.59 E-value=3.5e-05 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|++|||||||++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.58 E-value=5.1e-05 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
--|+++|++|||||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999865
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.57 E-value=0.00015 Score=55.10 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+..-|.|+|.+++|||+|+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 456789999999999999999985
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.57 E-value=4.1e-05 Score=51.83 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 238
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.56 E-value=6.4e-05 Score=49.55 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+....|+++|++||||||+++.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4456799999999999999998764
No 239
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.54 E-value=1.7e-05 Score=56.79 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=49.6
Q ss_pred EEeCCChh-cccccccccccCCcEEEEEEeCCChhHHHH-HHHHHHHHHhhhCCCCCEEEEeeCCcccccccccC-----
Q 031880 58 LWDTAGQE-DYNRLRPLSYRGADVFLLAFSLISKASYEN-VYKKWIPELRHYAPNVPIVLVGTKLDLREDKQFSS----- 130 (151)
Q Consensus 58 i~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~----- 130 (151)
|-..||+. +........+..+|+++.|+|+.++.+... ....|+ .+.|.++|+||+|+.+......
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34467864 444455567899999999999998876642 113332 5889999999999976432211
Q ss_pred CCCCCCceeccceeec
Q 031880 131 GHPGATPITTSQVWVT 146 (151)
Q Consensus 131 ~~~~~~~~~~s~~~~~ 146 (151)
+..+..++.+|+..+.
T Consensus 76 ~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQ 91 (282)
T ss_dssp HTTTCCEEECCTTTCT
T ss_pred HhcCCcEEEEECCCcc
Confidence 1234456666665443
No 240
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.54 E-value=6.4e-05 Score=50.86 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+...|++.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 241
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.53 E-value=5e-05 Score=52.09 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=21.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+.+ ...|+++|++||||||+++.|..
T Consensus 1 mm~~-~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 1 MTAI-APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp --CC-SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 4433 35799999999999999988864
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.51 E-value=4.9e-05 Score=50.20 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|+++|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.50 E-value=6.5e-05 Score=50.14 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.|+++|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.49 E-value=6.1e-05 Score=50.78 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998864
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=6.1e-05 Score=50.35 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999985
No 246
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.47 E-value=5.8e-05 Score=51.25 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=21.7
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+..+...|++.|.+||||||+++.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4434456899999999999999998874
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.46 E-value=6.4e-05 Score=49.69 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 031880 8 KCVTVGDGAVGKTCMLISY 26 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l 26 (151)
-++++|++|||||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999953
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=4.1e-05 Score=55.48 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999864
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.45 E-value=8e-05 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
|+++|++||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.43 E-value=8.1e-05 Score=51.35 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998864
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.42 E-value=8.1e-05 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988863
No 252
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.42 E-value=2.1e-05 Score=58.48 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=44.4
Q ss_pred ChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
.+++|+......+++++++++|+|+.+..+ .|...+.+...+.|+++|+||+|+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCC
Confidence 477888888777889999999999998763 455555665668899999999999643
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.42 E-value=8.3e-05 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988753
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.41 E-value=8.7e-05 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-|+++|++|||||||+++|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.41 E-value=0.00013 Score=48.35 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|.+||||||+++.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.40 E-value=9e-05 Score=48.38 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q 031880 7 IKCVTVGDGAVGKTCMLISY 26 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l 26 (151)
+.|++.|.+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=0.00011 Score=50.05 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+|+|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987764
No 258
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.40 E-value=0.00012 Score=48.72 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|++.|.+||||||++++|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=0.00011 Score=48.02 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.38 E-value=0.0001 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.023 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|++.|.+||||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.38 E-value=0.00014 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|++.|.+||||||++++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.38 E-value=9.6e-05 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|++.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 263
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.37 E-value=0.00011 Score=48.27 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
..|+++|++||||||+++.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988763
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.00011 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|+++|++||||||+++.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 265
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.35 E-value=0.00011 Score=50.03 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|++.|.+||||||++++|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.34 E-value=9.9e-05 Score=49.87 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|++|+||||+++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988775
No 267
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.34 E-value=0.00019 Score=48.43 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
......|++.|.+||||||++++|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999988874
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.33 E-value=0.00012 Score=50.09 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
++|+++|+|||||+|.+.+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998885
No 269
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.33 E-value=0.00011 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|++.|.+||||||++++|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=0.00014 Score=48.58 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.31 E-value=0.00014 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 272
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.30 E-value=7.9e-05 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.042 Sum_probs=16.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 3 TARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 3 ~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+++...|++.|.+||||||+++.|..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 2 PMRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp ---CCEEEEECCC----CHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999999874
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.30 E-value=0.00014 Score=48.15 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|++.|.+|+||||+++.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345699999999999999998874
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.30 E-value=0.00016 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHh
Q 031880 6 FIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~ 27 (151)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00015 Score=48.96 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|+++|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998874
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.28 E-value=0.00015 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998874
No 277
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.28 E-value=0.00016 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|++.|.+||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=0.00015 Score=48.70 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.27 E-value=0.00017 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999888643
No 280
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.27 E-value=0.00016 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988864
No 281
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.26 E-value=0.00021 Score=50.06 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=21.6
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 2 STARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 2 ~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
...+.+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344668899999999999999998865
No 282
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.25 E-value=0.00024 Score=49.56 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
..++|++.|.+||||||++++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999874
No 283
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.00021 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
...+.|++.|.+||||||+++.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.0002 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=21.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00022 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|++.|.+||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 286
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.22 E-value=0.00019 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|||||||++.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999999754
No 287
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.20 E-value=0.00016 Score=49.27 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 288
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.20 E-value=0.00019 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.++++|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00023 Score=47.75 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=23.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
++...|++.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45778999999999999999998865
No 290
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.20 E-value=0.00017 Score=48.61 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
.+|+++|.+||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998876
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00029 Score=50.52 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=21.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+...-|++.|++||||||++++|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999974
No 292
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.19 E-value=0.00028 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
+.|+++|.+||||||+++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 293
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00019 Score=49.16 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=21.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+.+.|+++|.+||||||+++.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 294
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.18 E-value=0.00022 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+.|+++|.+||||||+++.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 295
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.17 E-value=0.00021 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999988775
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.17 E-value=0.0002 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.16 E-value=0.00025 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-++++|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999863
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00024 Score=46.28 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
+|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 299
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.16 E-value=0.00026 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 300
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.15 E-value=0.00025 Score=50.16 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 301
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.14 E-value=0.00025 Score=50.55 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 302
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.00029 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 303
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.14 E-value=0.00016 Score=49.51 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|.+||||||++++|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 304
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.13 E-value=0.00031 Score=51.53 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=20.1
Q ss_pred CCCcc-eEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTAR-FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~-~~ki~viG~~~~GKstli~~l~~ 28 (151)
|++|. ..-|+|.|++|||||||+.+|..
T Consensus 1 ~~~m~m~~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 1 MTEMTKPFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCceEEEECCCcCcHHHHHHHHHH
Confidence 55553 24689999999999999998885
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.13 E-value=0.00025 Score=50.15 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998875
No 306
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.13 E-value=0.00028 Score=48.82 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 031880 8 KCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~ 27 (151)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999777
No 307
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.12 E-value=0.00036 Score=47.58 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+.|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998875
No 308
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00029 Score=48.42 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998864
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.11 E-value=0.00032 Score=49.02 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 310
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.11 E-value=0.00028 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999874
No 311
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.11 E-value=0.00037 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|++|. ..|+++|++|||||||...|..
T Consensus 1 ~~~m~-~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLP-PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence 66654 4799999999999999998875
No 312
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.11 E-value=0.00032 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998875
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.11 E-value=0.00038 Score=47.08 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
....|+++|.+|+||||+++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999998864
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.11 E-value=0.0003 Score=47.60 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998874
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.10 E-value=0.00037 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|++.|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 316
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.10 E-value=0.00029 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.10 E-value=0.00034 Score=49.07 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHh
Q 031880 6 FIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~ 27 (151)
...|+++|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 318
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00036 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888753
No 319
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.09 E-value=0.00032 Score=50.75 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998874
No 320
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.08 E-value=0.00032 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998864
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.08 E-value=0.00046 Score=45.87 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
+....|+++|.+||||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.08 E-value=0.00039 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|.++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 323
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.08 E-value=0.00037 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 324
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.08 E-value=0.00033 Score=48.17 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.07 E-value=0.00045 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999987775
No 326
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.07 E-value=0.00035 Score=49.08 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 327
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.07 E-value=0.00033 Score=50.54 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 031880 8 KCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~ 27 (151)
.++++|++|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 328
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.07 E-value=0.00033 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 329
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.06 E-value=0.00031 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 47899999999999999998754
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.06 E-value=0.00048 Score=49.47 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=20.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHh
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~ 27 (151)
.....|+|.|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999998665
No 331
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.06 E-value=0.00044 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=21.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
.....|+++|.+|||||||++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988764
No 332
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.06 E-value=0.00035 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 333
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.05 E-value=0.00019 Score=49.54 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHh-cC
Q 031880 8 KCVTVGDGAVGKTCMLISYT-SN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~-~~ 29 (151)
-++++|++|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.05 E-value=0.00029 Score=48.14 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|++|+|||||++.++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 335
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.05 E-value=0.00036 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998865
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.05 E-value=0.00031 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 337
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.05 E-value=0.00039 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999875
No 338
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.05 E-value=0.00035 Score=49.08 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-|+++|++|||||||..+|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
No 339
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.04 E-value=0.00038 Score=49.38 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 340
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.04 E-value=0.00031 Score=51.90 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-+++++|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988753
No 341
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.04 E-value=0.00032 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|.+||||||+++.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 342
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.03 E-value=0.00038 Score=48.12 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|+++|.+||||||+++.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 343
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.03 E-value=0.00041 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 344
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.03 E-value=0.00043 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00053 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=21.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
...+-|+++|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999987753
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00017 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988853
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.01 E-value=0.0004 Score=46.20 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 348
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.00 E-value=0.00041 Score=48.28 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
..+.|++.|++|+||||+++.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998873
No 349
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.00 E-value=0.00033 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 350
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.00 E-value=0.00042 Score=48.79 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 351
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.99 E-value=0.00043 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.00043 Score=49.22 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998863
No 353
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.00046 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.97 E-value=0.0005 Score=44.92 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+++.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 355
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.00054 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.95 E-value=0.0005 Score=47.34 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-|+++|+|||||+|.+.+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988875
No 357
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.95 E-value=0.0005 Score=45.85 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-|++.|.+||||||++++|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.94 E-value=0.0005 Score=45.95 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|++.|.+||||||+++.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988875
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.93 E-value=0.00056 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988864
No 360
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.00065 Score=44.33 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 361
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.92 E-value=0.00066 Score=48.42 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=21.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
...+.|++.|.+||||||+++.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998873
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.92 E-value=0.00059 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..+.+.|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998885
No 363
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.91 E-value=0.00044 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988875
No 364
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.91 E-value=0.00038 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988864
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.89 E-value=0.0008 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|++.|.+||||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998875
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.88 E-value=0.00057 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.|+++|++||||||+++.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998773
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.88 E-value=0.00019 Score=48.60 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 368
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.87 E-value=0.00039 Score=44.97 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988863
No 369
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.00058 Score=50.47 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|||||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998875
No 370
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.85 E-value=0.00073 Score=46.24 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 371
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.85 E-value=0.00057 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998753
No 372
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.84 E-value=0.00024 Score=47.78 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=44.3
Q ss_pred EEEEEEEeCCChhcccccccccccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh---CCCCCEEEEeeCCccc
Q 031880 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVYKKWIPELRHY---APNVPIVLVGTKLDLR 123 (151)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~ 123 (151)
.+.+.++|+|+... ......+..+|.++++...+... ..+ ..+.+.+++. .++.++.+|.|+.|-.
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 36678999987542 22234566799999999876443 454 5556666544 2456789999999853
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.83 E-value=0.00073 Score=46.08 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998873
No 374
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.83 E-value=0.0007 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999865
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.83 E-value=0.00078 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|++|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988775
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.82 E-value=0.00073 Score=50.08 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988864
No 377
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.00079 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.++++|++|+|||+|++.+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999998753
No 378
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.00071 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999864
No 379
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.82 E-value=0.00067 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.82 E-value=0.0007 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.--++++|+.||||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999987774
No 381
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.81 E-value=0.00074 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999875
No 382
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.00076 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999875
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.81 E-value=0.00076 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998753
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.80 E-value=0.00072 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988863
No 385
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.80 E-value=0.0021 Score=46.48 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=38.2
Q ss_pred ccccccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhhCCCCCEEEEeeCCccccc
Q 031880 71 RPLSYRGADVFLLAFSLISKAS-YENVYKKWIPELRHYAPNVPIVLVGTKLDLRED 125 (151)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 125 (151)
....+.++|.+++|+|+.++.. ...+ ..++...+.. ++|.++|.||+||.+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i-~r~L~~~~~~--~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEAN--DIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHTT--TCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEECCccCch
Confidence 3345789999999999986543 3434 6666555543 7899999999999765
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.80 E-value=0.00077 Score=50.05 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.++++|++|||||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 387
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.78 E-value=0.00093 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988875
No 388
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.77 E-value=0.00083 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998864
No 389
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.77 E-value=0.00082 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998753
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.77 E-value=0.00068 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999864
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.76 E-value=0.00073 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.74 E-value=0.001 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...-|++.|..|||||||++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999988864
No 393
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.72 E-value=0.00045 Score=49.57 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.3
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+.. .+-|++.|++||||||+++.|..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 5543 45699999999999999988764
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.72 E-value=0.0014 Score=45.35 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
...-|++.|.+||||||+++++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998875
No 395
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.001 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 396
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.69 E-value=0.0013 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|+++|.+|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 397
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.69 E-value=0.00086 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.|+++|.+|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 398
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.69 E-value=0.0014 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
..--++++|++||||||++..+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988774
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.68 E-value=0.0013 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
..|++.|.+||||||++++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999885
No 400
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.001 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 401
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.0011 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998875
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.67 E-value=0.0007 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999999875
No 403
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.67 E-value=0.0015 Score=43.90 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.|++.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988865
No 404
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.0012 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999873
No 405
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.66 E-value=0.001 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++|+|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998863
No 406
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.65 E-value=0.0012 Score=42.12 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=21.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~~ 30 (151)
...|++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999988643
No 407
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.0012 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
No 408
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.63 E-value=0.0013 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.62 E-value=0.0012 Score=43.66 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998764
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.62 E-value=0.001 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999988863
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0012 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.--++++|+.||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999987774
No 412
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.62 E-value=0.0013 Score=46.87 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999998863
No 413
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.59 E-value=0.0011 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
.++++|++|||||||++.+++--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998643
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.0011 Score=47.41 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999988774
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.59 E-value=0.0017 Score=43.72 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-..|.+.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999888753
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0013 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.--|+|+|.+|||||||+..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999988774
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.54 E-value=0.00069 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 418
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.54 E-value=0.0012 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.+++.|++|+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988765
No 419
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.52 E-value=0.0023 Score=45.06 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998864
No 420
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.51 E-value=0.0013 Score=47.12 Aligned_cols=24 Identities=13% Similarity=-0.081 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...+++.|++|+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788899999999999988853
No 421
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.51 E-value=0.0021 Score=44.39 Aligned_cols=28 Identities=14% Similarity=-0.038 Sum_probs=21.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 031880 1 MSTARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 1 m~~~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|...+..-|++.|.+||||||+++.+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455677899999999999999988764
No 422
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.51 E-value=0.0017 Score=46.67 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999998864
No 423
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.51 E-value=0.0015 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999986653
No 424
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.49 E-value=0.0018 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
..|+++|++|+|||+|+..|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999865
No 425
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.48 E-value=0.0017 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
..-|+++|.+||||||++++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999885
No 426
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.47 E-value=0.0016 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998875
No 427
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.46 E-value=0.0013 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.+.|++.|.+||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988765
No 428
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.46 E-value=0.0018 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988874
No 429
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0014 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|||||||++.+++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999988753
No 430
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.45 E-value=0.0019 Score=43.16 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
++|+|.++||||+|+.+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.43 E-value=0.0028 Score=46.82 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=20.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
....+|+++|++|+||||+.+.+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999976653
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.43 E-value=0.0018 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.079 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998885
No 433
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.43 E-value=0.0012 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.--++++|..|+|||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 335688999999999999999965
No 434
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.42 E-value=0.0019 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998875
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.42 E-value=0.0025 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
..-|+|.|++|||||+|+.++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346889999999999999999854
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.41 E-value=0.0018 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.37 E-value=0.0027 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-|+|+|++|||||+|+.++...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999999853
No 438
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.002 Score=44.40 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|++|+|||||+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877763
No 439
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.37 E-value=0.0026 Score=40.99 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 031880 9 CVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~ 27 (151)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998765
No 440
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.36 E-value=0.0017 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~~ 29 (151)
+...|++.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999888753
No 441
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0018 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.+++.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998885
No 442
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.36 E-value=0.0024 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988753
No 443
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.36 E-value=0.0019 Score=45.73 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
-++++|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988874
No 444
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.0024 Score=46.37 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999864
No 445
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.32 E-value=0.0025 Score=46.20 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
..+++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999998753
No 446
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.31 E-value=0.0026 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 447
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0023 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.|++.|+||+|||+|++.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999985
No 448
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.30 E-value=0.0022 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999998864
No 449
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.30 E-value=0.0026 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.+++.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988854
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.0019 Score=47.09 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 031880 9 CVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~ 28 (151)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998776
No 451
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0027 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-.|++.|+||+|||+|++.+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0023 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 453
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.28 E-value=0.0026 Score=44.16 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 031880 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 5 ~~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-+++.++|.+||||||++.+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.28 E-value=0.0026 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.27 E-value=0.0028 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.27 E-value=0.0024 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~~ 30 (151)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999988753
No 457
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.25 E-value=0.0026 Score=48.86 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998874
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.24 E-value=0.0013 Score=41.92 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999888754
No 459
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0027 Score=48.12 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-.|++.|+||+|||+|++.+.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999863
No 460
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0029 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988753
No 461
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.18 E-value=0.0028 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.+++.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988853
No 462
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.18 E-value=0.0012 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998875
No 463
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.17 E-value=0.0035 Score=41.67 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-|++.|++|+||||++..|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 36899999999999999988864
No 464
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.15 E-value=0.0029 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988774
No 465
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.15 E-value=0.0032 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4789999999999999998854
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0026 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 467
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.14 E-value=0.0096 Score=42.86 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 031880 9 CVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~~~ 29 (151)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 456677999999999999754
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.14 E-value=0.0034 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.--|+++|++|+||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999987763
No 469
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0033 Score=47.19 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-.|++.|+||+|||.|++.+.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346999999999999999999863
No 470
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.13 E-value=0.0037 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987775
No 471
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.13 E-value=0.0023 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 472
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.12 E-value=0.0033 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
-.+++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0038 Score=43.22 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35699999999999999998875
No 474
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.11 E-value=0.0033 Score=46.24 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999988863
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.0033 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++++|+.|+|||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999874
No 476
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.11 E-value=0.0036 Score=43.86 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~~ 30 (151)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999998653
No 477
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.11 E-value=0.0034 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988853
No 478
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=0.0026 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988864
No 479
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.09 E-value=0.0034 Score=45.18 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHh
Q 031880 7 IKCVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~ 27 (151)
-.|+++|+.|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998776
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.09 E-value=0.0031 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-+.++|++|+|||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 481
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.07 E-value=0.004 Score=45.80 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999853
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.07 E-value=0.0023 Score=50.19 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999887754
No 483
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0037 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999999864
No 484
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.07 E-value=0.0037 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988853
No 485
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.06 E-value=0.0039 Score=46.10 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 031880 9 CVTVGDGAVGKTCMLISYT 27 (151)
Q Consensus 9 i~viG~~~~GKstli~~l~ 27 (151)
.+++|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 486
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.02 E-value=0.0033 Score=45.44 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999988753
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.02 E-value=0.003 Score=49.64 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.01 E-value=0.0054 Score=41.94 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=20.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
|+..-|++.|.+||||||+++.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4456799999999999999988764
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.00 E-value=0.004 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 490
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.98 E-value=0.0036 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.97 E-value=0.0046 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999999874
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.97 E-value=0.004 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.++++|++|+|||||++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998774
No 493
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.96 E-value=0.0037 Score=43.52 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=20.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 031880 4 ARFIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 4 ~~~~ki~viG~~~~GKstli~~l~~ 28 (151)
++..-|++.|.+||||||+++++..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988764
No 494
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.94 E-value=0.0042 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 031880 7 IKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~ 28 (151)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.92 E-value=0.0053 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.++++|+.|+|||||++.+.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999975
No 496
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.92 E-value=0.0031 Score=45.66 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 031880 8 KCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~ 28 (151)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998875
No 497
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.90 E-value=0.0051 Score=46.77 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 031880 8 KCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 8 ki~viG~~~~GKstli~~l~~~ 29 (151)
.+++.|++|+|||||++.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999988864
No 498
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.89 E-value=0.0053 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 031880 7 IKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 7 ~ki~viG~~~~GKstli~~l~~~ 29 (151)
..+++.|++|+|||+|++.+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999754
No 499
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.89 E-value=0.0042 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTS 28 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~ 28 (151)
.-+|+++|++|+|||++++++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 500
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0048 Score=46.67 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 031880 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (151)
Q Consensus 6 ~~ki~viG~~~~GKstli~~l~~~ 29 (151)
.-.|++.|+||+|||+|++.+.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 346999999999999999999863
Done!