BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031881
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWPYM 136
I V FV +G E I+ G S+L+ AH N+I+LEGACEGS+ACSTCHVIV ++ +
Sbjct: 4 IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELL 62
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K VG S+L+ EN+++++G ACEG+LACSTCH+I H
Sbjct: 5 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHI 64
Query: 133 WPYM 136
+ +
Sbjct: 65 YEKL 68
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K VG S+L+ EN+++++G ACEG+LACSTCH+I H
Sbjct: 3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHI 62
Query: 133 WPYM 136
+ +
Sbjct: 63 YEKL 66
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVH 131
+D I V F+++DGE K VG S+L+ EN+++++G ACEG+LACSTCH+I H
Sbjct: 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDH 61
Query: 132 YWPYM 136
+ +
Sbjct: 62 IYEKL 66
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIV 128
D++NV FVD+ G+ + VG ++L A + ++LEGACE SLACSTCHV V
Sbjct: 3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYV 56
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 63
Query: 133 WPYM 136
+ +
Sbjct: 64 FEKL 67
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 63
Query: 133 WPYM 136
+ +
Sbjct: 64 FEKL 67
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H
Sbjct: 3 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 62
Query: 133 WPYM 136
+ +
Sbjct: 63 FEKL 66
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 63
Query: 133 WPYM 136
+ +
Sbjct: 64 FEKL 67
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 105
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H
Sbjct: 1 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 60
Query: 133 WPYM 136
+ +
Sbjct: 61 FEKL 64
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHY 132
+D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H
Sbjct: 1 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 60
Query: 133 WPYM 136
+ +
Sbjct: 61 FEKL 64
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHYW 133
D I V F+++DGE K +G S+L+ +N+++++G ACEG+LACSTCH+I H +
Sbjct: 5 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIF 64
Query: 134 PYM 136
+
Sbjct: 65 EKL 67
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIV 128
M + FVD GE + ++V G +++EAA N I +E C G+ AC+TCHV V
Sbjct: 21 MAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYV 73
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 106
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIV 128
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIV 128
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V
Sbjct: 3 VVYVSHDGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52
>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin
(Fdxb) From Pseudomonas Putida Jcm 20004
Length = 113
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 77 MINVTFVDKDG---EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIV 128
M VTF+ + E ++V G ++LE AH++ IE+E AC G AC+TCH IV
Sbjct: 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIV 55
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIV 128
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIV 128
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIV 128
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIV 128
V +V DG + + V G+S+++AA N I ++ G C GS +C+TCHV V
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52
>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 68
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 99 SMLEAAHENDIELEG--ACEGSLACSTCHVIVMVHYWPYM 136
S+L+ EN+++++G ACEG+LACSTCH+I H + +
Sbjct: 1 SLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKL 40
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 97 GMSMLEAAHENDIELEGACEGSLACSTCHVIV 128
G ++L+AA N IE+E ACE S AC+TCH IV
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHCIV 55
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIV 128
+ F++ +G ++ G++++EAA +N + ++ C G+ ACSTCH V
Sbjct: 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYV 52
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 85 KDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMVHYWPYM 136
+DG I+ G+S++EA + I EL C G +C+TCHV+V + +
Sbjct: 8 RDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRL 60
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHV 126
V F+D+ E + G S++E A +N + + C GS C+TC +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRI 50
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTC 124
N+T DGE+K I+ +L+A+ ++EL +C G +CSTC
Sbjct: 4 NITLRTNDGEKK-IECNEDEYILDASERQNVELPYSCRGG-SCSTC 47
>pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
Length = 141
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 83 VDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134
VD GE+ +I PVG ++L A ++IE G L IV V Y P
Sbjct: 84 VDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVR----IVEVTYQP 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,263,654
Number of Sequences: 62578
Number of extensions: 158895
Number of successful extensions: 360
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 28
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)