Query 031881
Match_columns 151
No_of_seqs 179 out of 1171
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.9 5.5E-22 1.2E-26 154.9 9.4 97 50-146 15-117 (159)
2 PTZ00490 Ferredoxin superfamil 99.7 2.4E-16 5.1E-21 122.1 9.3 72 73-144 31-108 (143)
3 PLN02593 adrenodoxin-like ferr 99.7 2.1E-16 4.6E-21 118.1 8.2 66 78-143 1-72 (117)
4 COG0633 Fdx Ferredoxin [Energy 99.5 2.1E-14 4.6E-19 104.8 6.5 66 77-143 1-71 (102)
5 TIGR02007 fdx_isc ferredoxin, 99.5 1.5E-13 3.2E-18 101.3 8.0 52 85-138 13-66 (110)
6 TIGR02008 fdx_plant ferredoxin 99.4 3.5E-13 7.6E-18 97.0 7.2 56 78-134 3-58 (97)
7 CHL00134 petF ferredoxin; Vali 99.3 4E-12 8.6E-17 92.2 7.8 57 77-134 3-60 (99)
8 PRK10713 2Fe-2S ferredoxin Yfa 99.3 6.9E-12 1.5E-16 88.2 6.1 54 77-134 1-55 (84)
9 PF00111 Fer2: 2Fe-2S iron-sul 99.3 7.1E-12 1.5E-16 85.3 5.8 49 84-133 2-52 (78)
10 TIGR01941 nqrF NADH:ubiquinone 99.2 1.4E-11 3.1E-16 107.4 7.3 61 74-134 26-86 (405)
11 PLN03136 Ferredoxin; Provision 99.2 2.8E-11 6E-16 94.3 7.5 58 75-134 52-109 (148)
12 PTZ00038 ferredoxin; Provision 99.2 8.5E-11 1.9E-15 95.1 7.5 57 76-134 94-150 (191)
13 PRK05464 Na(+)-translocating N 99.2 1E-10 2.3E-15 102.1 8.1 60 73-134 31-90 (409)
14 cd00207 fer2 2Fe-2S iron-sulfu 99.1 1.3E-10 2.8E-15 79.3 6.4 53 80-134 1-53 (84)
15 PRK11872 antC anthranilate dio 99.0 9.5E-10 2.1E-14 93.8 7.6 55 79-134 4-58 (340)
16 PRK07609 CDP-6-deoxy-delta-3,4 99.0 1.4E-09 2.9E-14 92.1 7.1 53 78-134 3-55 (339)
17 PRK05713 hypothetical protein; 98.9 1.1E-09 2.3E-14 92.3 5.7 44 90-134 9-52 (312)
18 TIGR02160 PA_CoA_Oxy5 phenylac 98.9 2.4E-09 5.2E-14 91.0 7.8 57 76-134 261-318 (352)
19 PRK10684 HCP oxidoreductase, N 98.9 7.1E-09 1.5E-13 87.9 7.8 56 75-134 246-301 (332)
20 PF13510 Fer2_4: 2Fe-2S iron-s 98.7 3.4E-08 7.5E-13 69.3 4.6 50 76-130 2-60 (82)
21 PRK07569 bidirectional hydroge 98.6 1.1E-07 2.3E-12 78.0 6.1 49 77-130 3-56 (234)
22 COG3894 Uncharacterized metal- 98.6 4.8E-08 1E-12 89.0 4.1 54 77-134 1-54 (614)
23 COG2871 NqrF Na+-transporting 98.4 3.4E-07 7.3E-12 79.4 5.7 53 76-130 35-87 (410)
24 PRK08166 NADH dehydrogenase su 98.1 5.4E-06 1.2E-10 78.7 6.7 49 77-130 1-54 (847)
25 PRK09908 xanthine dehydrogenas 97.9 3.7E-05 8.1E-10 60.8 6.4 53 76-130 5-58 (159)
26 PTZ00305 NADH:ubiquinone oxido 97.8 3.9E-05 8.5E-10 66.0 5.7 50 76-130 67-122 (297)
27 PRK09130 NADH dehydrogenase su 97.8 5E-05 1.1E-09 71.2 6.3 49 77-130 1-54 (687)
28 PRK07860 NADH dehydrogenase su 97.7 8.2E-05 1.8E-09 70.6 6.5 51 75-130 2-57 (797)
29 PRK08493 NADH dehydrogenase su 97.6 0.00011 2.3E-09 70.6 6.2 49 77-130 1-54 (819)
30 PRK12814 putative NADPH-depend 97.6 0.0001 2.2E-09 68.4 5.5 49 77-130 3-56 (652)
31 COG1034 NuoG NADH dehydrogenas 97.5 0.00014 3.1E-09 68.6 5.9 49 77-130 1-54 (693)
32 PRK11433 aldehyde oxidoreducta 97.5 0.0002 4.4E-09 59.2 6.1 51 78-130 50-102 (217)
33 TIGR03193 4hydroxCoAred 4-hydr 97.4 0.0003 6.5E-09 55.1 5.2 48 81-130 3-52 (148)
34 PRK09129 NADH dehydrogenase su 97.4 0.00032 7E-09 66.0 6.2 49 77-130 1-54 (776)
35 TIGR01973 NuoG NADH-quinone ox 97.4 0.00027 5.9E-09 64.8 5.3 43 86-130 4-51 (603)
36 COG3383 Uncharacterized anaero 97.2 0.00052 1.1E-08 65.8 5.4 51 75-130 3-58 (978)
37 PRK06259 succinate dehydrogena 97.2 0.00077 1.7E-08 60.2 5.8 39 90-129 23-67 (486)
38 TIGR03198 pucE xanthine dehydr 97.1 0.0012 2.6E-08 51.7 5.3 49 80-130 4-54 (151)
39 COG2080 CoxS Aerobic-type carb 97.0 0.0015 3.3E-08 51.6 5.7 50 79-130 3-54 (156)
40 PRK12577 succinate dehydrogena 97.0 0.002 4.3E-08 55.6 6.4 42 88-130 19-66 (329)
41 PRK12576 succinate dehydrogena 96.9 0.0025 5.4E-08 54.0 6.7 42 88-130 25-72 (279)
42 PRK12386 fumarate reductase ir 96.8 0.0031 6.8E-08 52.9 6.2 42 88-130 20-67 (251)
43 PRK05950 sdhB succinate dehydr 96.8 0.0022 4.7E-08 52.6 5.1 41 89-130 19-66 (232)
44 PF13085 Fer2_3: 2Fe-2S iron-s 96.8 0.0033 7.3E-08 46.9 5.6 40 90-130 21-66 (110)
45 TIGR00384 dhsB succinate dehyd 96.8 0.0012 2.7E-08 53.5 3.2 40 90-130 17-62 (220)
46 PRK13552 frdB fumarate reducta 96.5 0.0037 8E-08 51.9 4.7 42 88-130 24-71 (239)
47 PRK09800 putative hypoxanthine 96.5 0.0046 9.9E-08 60.4 5.8 50 80-130 3-53 (956)
48 PRK12385 fumarate reductase ir 96.4 0.0089 1.9E-07 49.7 6.0 41 89-130 26-72 (244)
49 PLN00129 succinate dehydrogena 96.3 0.006 1.3E-07 52.0 4.7 61 69-130 35-110 (276)
50 PRK08640 sdhB succinate dehydr 96.2 0.0077 1.7E-07 50.3 4.7 42 88-130 23-77 (249)
51 TIGR02963 xanthine_xdhA xanthi 96.1 0.0073 1.6E-07 54.6 4.4 43 85-128 5-50 (467)
52 TIGR03313 Se_sel_red_Mo probab 95.7 0.016 3.4E-07 56.7 5.0 45 85-130 3-49 (951)
53 COG0479 FrdB Succinate dehydro 95.2 0.026 5.5E-07 47.3 4.2 41 89-130 21-67 (234)
54 PRK07570 succinate dehydrogena 95.2 0.029 6.4E-07 47.0 4.4 41 90-131 22-73 (250)
55 KOG2282 NADH-ubiquinone oxidor 94.1 0.09 2E-06 49.1 5.3 51 75-130 30-85 (708)
56 TIGR03311 Se_dep_Molyb_1 selen 93.9 0.089 1.9E-06 50.9 5.1 43 85-130 5-49 (848)
57 TIGR02969 mam_aldehyde_ox alde 93.9 0.072 1.6E-06 53.9 4.5 48 80-129 3-53 (1330)
58 PLN00192 aldehyde oxidase 93.7 0.11 2.3E-06 52.7 5.2 48 80-129 6-56 (1344)
59 PRK12575 succinate dehydrogena 92.2 0.14 3E-06 42.6 3.1 40 90-130 25-70 (235)
60 TIGR01372 soxA sarcosine oxida 80.4 3 6.6E-05 40.9 5.2 48 79-130 12-70 (985)
61 PRK13669 hypothetical protein; 79.8 1.3 2.7E-05 31.5 1.8 46 101-148 20-71 (78)
62 cd01760 RBD Ubiquitin-like dom 77.7 5.2 0.00011 27.6 4.3 39 84-129 6-45 (72)
63 COG4630 XdhA Xanthine dehydrog 76.5 6.4 0.00014 35.9 5.6 51 77-129 6-59 (493)
64 PF02196 RBD: Raf-like Ras-bin 72.0 8.1 0.00018 26.2 4.1 27 78-106 3-29 (71)
65 smart00455 RBD Raf-like Ras-bi 69.9 11 0.00024 25.6 4.3 22 84-105 6-27 (70)
66 cd01791 Ubl5 UBL5 ubiquitin-li 68.9 12 0.00026 25.5 4.4 36 77-112 1-40 (73)
67 PF07293 DUF1450: Protein of u 67.6 3.4 7.3E-05 29.1 1.5 49 98-148 17-71 (78)
68 PLN02906 xanthine dehydrogenas 65.3 6.6 0.00014 40.1 3.5 33 97-130 1-34 (1319)
69 PF02824 TGS: TGS domain; Int 65.3 9.6 0.00021 24.8 3.2 32 83-116 4-35 (60)
70 cd01818 TIAM1_RBD Ubiquitin do 64.3 11 0.00023 26.8 3.4 25 79-105 3-27 (77)
71 cd06221 sulfite_reductase_like 63.2 5.1 0.00011 32.6 1.9 30 98-127 203-240 (253)
72 cd06220 DHOD_e_trans_like2 FAD 62.0 5.6 0.00012 31.8 2.0 31 98-129 180-216 (233)
73 PRK00054 dihydroorotate dehydr 59.6 5.9 0.00013 32.1 1.7 31 99-130 195-231 (250)
74 cd01763 Sumo Small ubiquitin-r 59.5 39 0.00085 23.3 5.7 36 71-106 5-40 (87)
75 cd01816 Raf_RBD Ubiquitin doma 59.3 15 0.00032 25.9 3.4 23 85-107 7-29 (74)
76 PRK08364 sulfur carrier protei 55.2 35 0.00075 22.7 4.7 35 76-111 3-37 (70)
77 PF03658 Ub-RnfH: RnfH family 54.7 16 0.00035 26.1 3.0 33 78-110 3-36 (84)
78 TIGR02911 sulfite_red_B sulfit 54.4 7.5 0.00016 32.0 1.5 29 99-127 204-240 (261)
79 cd06219 DHOD_e_trans_like1 FAD 54.4 10 0.00023 30.6 2.4 29 99-128 194-228 (248)
80 PRK06222 ferredoxin-NADP(+) re 52.7 11 0.00023 31.4 2.2 29 99-128 195-229 (281)
81 cd06218 DHOD_e_trans FAD/NAD b 49.9 18 0.00039 29.2 3.1 31 99-130 194-230 (246)
82 cd01809 Scythe_N Ubiquitin-lik 48.2 39 0.00086 21.5 4.0 26 78-103 1-26 (72)
83 PF11470 TUG-UBL1: GLUT4 regul 47.4 22 0.00048 24.0 2.7 25 83-107 2-26 (65)
84 PRK08345 cytochrome-c3 hydroge 47.2 9.7 0.00021 31.8 1.1 33 98-131 225-266 (289)
85 cd01817 RGS12_RBD Ubiquitin do 46.4 30 0.00066 24.2 3.3 22 84-105 6-27 (73)
86 cd01802 AN1_N ubiquitin-like d 45.5 66 0.0014 23.2 5.2 37 75-111 25-65 (103)
87 PF10418 DHODB_Fe-S_bind: Iron 45.5 12 0.00027 22.9 1.1 18 113-131 4-21 (40)
88 cd01805 RAD23_N Ubiquitin-like 45.2 46 0.00099 21.8 4.0 25 79-103 2-26 (77)
89 PRK08221 anaerobic sulfite red 44.9 12 0.00026 30.8 1.3 28 99-127 206-242 (263)
90 cd01803 Ubiquitin Ubiquitin. U 44.6 47 0.001 21.4 4.0 25 79-103 2-26 (76)
91 PRK01777 hypothetical protein; 43.8 71 0.0015 23.0 5.1 36 77-112 3-41 (95)
92 TIGR02899 spore_safA spore coa 43.5 13 0.00028 21.2 1.0 19 94-112 1-19 (44)
93 PTZ00044 ubiquitin; Provisiona 43.3 51 0.0011 21.6 4.0 32 79-110 2-37 (76)
94 cd01806 Nedd8 Nebb8-like ubiq 42.4 54 0.0012 21.1 4.0 26 79-104 2-27 (76)
95 cd01807 GDX_N ubiquitin-like d 42.4 54 0.0012 21.6 4.0 25 79-103 2-26 (74)
96 PRK06437 hypothetical protein; 41.5 65 0.0014 21.4 4.3 26 86-111 9-34 (67)
97 cd01810 ISG15_repeat2 ISG15 ub 40.2 62 0.0014 21.3 4.1 32 80-111 1-36 (74)
98 PRK07440 hypothetical protein; 40.1 69 0.0015 21.5 4.3 31 77-112 4-34 (70)
99 PF01476 LysM: LysM domain; I 39.8 22 0.00047 20.8 1.6 19 93-111 2-20 (44)
100 PRK12778 putative bifunctional 39.2 25 0.00055 33.3 2.7 29 99-128 195-229 (752)
101 cd00118 LysM Lysin domain, fou 39.0 30 0.00065 18.7 2.1 21 91-111 2-22 (46)
102 PRK05659 sulfur carrier protei 38.5 49 0.0011 21.3 3.3 24 86-111 6-29 (66)
103 KOG3049 Succinate dehydrogenas 37.6 34 0.00074 29.1 2.9 39 91-130 69-114 (288)
104 PF03990 DUF348: Domain of unk 35.8 83 0.0018 19.0 3.8 30 80-111 2-31 (43)
105 cd01804 midnolin_N Ubiquitin-l 35.1 92 0.002 20.9 4.3 26 78-103 2-27 (78)
106 PRK05802 hypothetical protein; 34.7 31 0.00066 29.6 2.3 29 100-129 269-305 (320)
107 cd01787 GRB7_RA RA (RAS-associ 34.0 1.1E+02 0.0024 21.9 4.7 27 80-106 5-31 (85)
108 PF10531 SLBB: SLBB domain; I 33.1 79 0.0017 20.1 3.6 25 90-114 12-36 (59)
109 PF09791 Oxidored-like: Oxidor 32.9 26 0.00056 22.5 1.2 16 112-128 15-30 (48)
110 cd01792 ISG15_repeat1 ISG15 ub 31.2 1E+02 0.0022 20.7 4.1 26 78-103 3-28 (80)
111 cd01790 Herp_N Homocysteine-re 29.5 1.2E+02 0.0027 21.1 4.3 27 78-104 2-30 (79)
112 cd01812 BAG1_N Ubiquitin-like 29.5 93 0.002 19.8 3.5 26 78-104 1-26 (71)
113 KOG0430 Xanthine dehydrogenase 29.3 88 0.0019 32.3 4.7 44 86-130 8-54 (1257)
114 PF04225 OapA: Opacity-associa 28.9 55 0.0012 22.9 2.4 22 90-111 3-24 (85)
115 smart00257 LysM Lysin motif. 28.0 63 0.0014 17.0 2.2 20 92-111 2-21 (44)
116 PF00789 UBX: UBX domain; Int 27.8 1.6E+02 0.0035 19.5 4.6 31 73-103 2-32 (82)
117 COG2071 Predicted glutamine am 27.4 32 0.0007 29.2 1.2 19 99-117 98-116 (243)
118 KOG4214 Myotrophin and similar 27.2 18 0.00039 27.2 -0.3 26 84-109 87-112 (117)
119 cd01798 parkin_N amino-termina 26.9 1.1E+02 0.0023 19.9 3.4 23 81-103 2-24 (70)
120 PF11976 Rad60-SLD: Ubiquitin- 26.7 1E+02 0.0022 19.8 3.3 35 78-112 1-39 (72)
121 PRK12775 putative trifunctiona 26.0 59 0.0013 32.4 2.9 30 99-129 195-230 (1006)
122 COG3061 OapA Cell envelope opa 25.8 66 0.0014 27.3 2.7 27 85-111 155-181 (242)
123 PRK05863 sulfur carrier protei 24.9 1.5E+02 0.0032 19.3 3.8 25 86-112 6-30 (65)
124 TIGR00601 rad23 UV excision re 24.9 1E+02 0.0023 27.4 4.0 27 78-104 1-27 (378)
125 PRK12779 putative bifunctional 23.7 76 0.0016 31.5 3.1 29 99-128 861-895 (944)
126 cd06192 DHOD_e_trans_like FAD/ 23.6 41 0.0009 26.8 1.1 15 113-128 214-228 (243)
127 cd01796 DDI1_N DNA damage indu 23.2 1.3E+02 0.0028 19.8 3.3 23 81-103 2-25 (71)
128 cd01808 hPLIC_N Ubiquitin-like 22.7 1.7E+02 0.0037 18.9 3.8 25 78-103 1-25 (71)
129 PF09012 FeoC: FeoC like trans 22.6 38 0.00082 22.3 0.6 26 98-125 32-61 (69)
130 PF07627 PSCyt3: Protein of un 21.9 20 0.00042 26.3 -1.0 24 99-130 58-81 (101)
131 smart00166 UBX Domain present 21.8 2.6E+02 0.0055 18.7 4.7 29 76-104 3-31 (80)
132 PF12631 GTPase_Cys_C: Catalyt 21.7 56 0.0012 21.9 1.3 16 134-149 57-72 (73)
133 PRK06944 sulfur carrier protei 21.6 1.5E+02 0.0032 18.8 3.3 21 90-110 8-28 (65)
134 PF03150 CCP_MauG: Di-haem cyt 21.5 21 0.00044 27.9 -1.0 11 117-127 21-31 (159)
135 COG4844 Uncharacterized protei 21.4 34 0.00075 24.0 0.2 38 108-147 28-70 (78)
136 PF05369 MtmB: Monomethylamine 21.4 35 0.00076 31.3 0.3 55 76-146 40-95 (457)
137 cd01813 UBP_N UBP ubiquitin pr 21.3 1.4E+02 0.0031 19.9 3.3 24 79-103 2-25 (74)
138 PF01333 Apocytochr_F_C: Apocy 20.5 40 0.00087 25.7 0.4 29 73-101 19-47 (118)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.87 E-value=5.5e-22 Score=154.88 Aligned_cols=97 Identities=45% Similarity=0.733 Sum_probs=76.6
Q ss_pred cccccccceeeecccccc-CCCCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEE
Q 031881 50 GSIFQKYPHFSTTAENDA-SHGSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIV 128 (151)
Q Consensus 50 ~~~~~~~~~fst~~~~~~-~~~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v 128 (151)
-+++.+++.|.+.....- ...++++.+.++|+|+++||++..+.+.+|+|||++|++|||+++++|+|+.+|+||||+|
T Consensus 15 ~a~~~~~~~f~~~~t~~~~~~~~~~~~e~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv 94 (159)
T KOG3309|consen 15 LAPFTRNHIFRTSSTSEFSPSKGPRKVEDIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIV 94 (159)
T ss_pred ccccccceeeccCcccccccccCCCCCceEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEE
Confidence 345566666665443322 2366677777999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC---CCCChhh--hhhhhh
Q 031881 129 MVHYW---PYMCRDN--VLSNIF 146 (151)
Q Consensus 129 ~~~~l---~~~~~~E--~L~~~~ 146 (151)
.+++| +++.++| +|+-.|
T Consensus 95 ~~~~yekl~ep~DeE~DmLDlA~ 117 (159)
T KOG3309|consen 95 DEEYYEKLPEPEDEENDMLDLAF 117 (159)
T ss_pred cHHHHhcCCCCcchHHHHHHhhh
Confidence 98554 4555554 666554
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.67 E-value=2.4e-16 Score=122.14 Aligned_cols=72 Identities=29% Similarity=0.629 Sum_probs=62.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCCCcCCCCCCceecccEEEEEcCC---CCCCChhh--hhhh
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIELEGACEGSLACSTCHVIVMVHY---WPYMCRDN--VLSN 144 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI~l~~aCgG~g~CgTChV~v~~~~---l~~~~~~E--~L~~ 144 (151)
.+.+.++|+|+++||.++++++++|+|||+++.++ ++++++.|||.|+|+||||+|.++. +++++++| .|+.
T Consensus 31 ~~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~ 108 (143)
T PTZ00490 31 STPGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAK 108 (143)
T ss_pred cCCCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhc
Confidence 44579999999999999999999999999999995 6999999999999999999998754 56666644 5553
No 3
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.67 E-value=2.1e-16 Score=118.08 Aligned_cols=66 Identities=73% Similarity=1.134 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEc----CCCCCCChhh--hhh
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMV----HYWPYMCRDN--VLS 143 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~----~~l~~~~~~E--~L~ 143 (151)
++|+|++++|+++++++.+|+|||++++++|+++++.|+|.|.|+||||+|.+ +.+++++++| +|+
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~ 72 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLD 72 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999953 4467777655 555
No 4
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.52 E-value=2.1e-14 Score=104.80 Aligned_cols=66 Identities=38% Similarity=0.536 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcC--CCCCCChhh--hhh
Q 031881 77 MINVTFVDKDGEE-KNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVH--YWPYMCRDN--VLS 143 (151)
Q Consensus 77 ~v~Vtfi~~dG~~-~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~--~l~~~~~~E--~L~ 143 (151)
|.++.|+..+++. ....++.|++|||+|+++||++|++|+|. +|+||||+|.++ .++++++.| +|+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g-~C~TC~v~v~~G~~~v~~~~~~e~~~l~ 71 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKVLEGFDEVSPPEESEEDLLD 71 (102)
T ss_pred CCceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCCC-ccCccEEEEecCcccCCCcchHHHHHHH
Confidence 4567777777644 45555559999999999999999999965 999999999998 788777754 554
No 5
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.48 E-value=1.5e-13 Score=101.26 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=46.1
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCC--CCCCCh
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHY--WPYMCR 138 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~--l~~~~~ 138 (151)
++| +++++.+|+||||+++++|++++++|+|.|.|+||||+|.++. +++++.
T Consensus 13 p~~--~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~ 66 (110)
T TIGR02007 13 PEG--AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASE 66 (110)
T ss_pred CCC--eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCH
Confidence 555 8999999999999999999999999999999999999998753 566654
No 6
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.44 E-value=3.5e-13 Score=97.04 Aligned_cols=56 Identities=38% Similarity=0.515 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
.+|+|++++|..+++++++|+||||+++++||++|++|+ +|.||+|+|+|.++...
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~~~ 58 (97)
T TIGR02008 3 YKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVEEGTVD 58 (97)
T ss_pred EEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEEeCcEe
Confidence 578887788888999999999999999999999999999 89999999999987654
No 7
>CHL00134 petF ferredoxin; Validated
Probab=99.34 E-value=4e-12 Score=92.17 Aligned_cols=57 Identities=32% Similarity=0.474 Sum_probs=50.0
Q ss_pred ceEEEEEc-CCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 77 MINVTFVD-KDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 77 ~v~Vtfi~-~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
.++|++.+ .+|..+++++++|+||||+|+++||++|++|+ .|.||+|+++|.++...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~v~ 60 (99)
T CHL00134 3 TYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKVTEGTVD 60 (99)
T ss_pred eEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEEeCccc
Confidence 46788764 26767899999999999999999999999999 99999999999987654
No 8
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.29 E-value=6.9e-12 Score=88.24 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCCEEEEEeCC-CchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 77 MINVTFVDKDGEEKNIKVPV-GMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~-G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
|++|+|. ..| +++++++ |+||||+++++||++|++|+ .|.||+|++++.++.+.
T Consensus 1 ~~~v~~~-~~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~~sG~v~ 55 (84)
T PRK10713 1 MARVTLR-ITG--TQLLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRLVAGQVD 55 (84)
T ss_pred CCEEEEE-eCC--cEEEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEEEeCeEe
Confidence 5678875 455 6788886 59999999999999999999 99999999999987665
No 9
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.28 E-value=7.1e-12 Score=85.29 Aligned_cols=49 Identities=29% Similarity=0.530 Sum_probs=44.4
Q ss_pred cCCCCEEEEEeCCCch-HHHHHHHC-CCCCcCCCCCCceecccEEEEEcCCC
Q 031881 84 DKDGEEKNIKVPVGMS-MLEAAHEN-DIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 84 ~~dG~~~tv~v~~G~s-LLdaa~~~-gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
+.+|+.+++++++|++ ||++++++ |+++++.|+|.+ ||+|+|+|.++..
T Consensus 2 ~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~-Cg~C~v~v~~G~~ 52 (78)
T PF00111_consen 2 TINGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGG-CGTCRVRVLEGEV 52 (78)
T ss_dssp ETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSS-SSTTEEEEEESEE
T ss_pred EECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCc-cCCcEEEEeeCcc
Confidence 4678889999999999 99999999 999999999755 9999999998765
No 10
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.25 E-value=1.4e-11 Score=107.36 Aligned_cols=61 Identities=31% Similarity=0.420 Sum_probs=52.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
-..+.+|+++..+|+.+++++++|+||||+|+++|+++|+.|+|.|.||+|+|+|.++...
T Consensus 26 ~~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~ 86 (405)
T TIGR01941 26 LVSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGE 86 (405)
T ss_pred ccccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcC
Confidence 3455567776677878999999999999999999999999999889999999999886543
No 11
>PLN03136 Ferredoxin; Provisional
Probab=99.23 E-value=2.8e-11 Score=94.35 Aligned_cols=58 Identities=26% Similarity=0.463 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
...++|+|++++| .+++++++|++|||+++++||++|++|+ .|.||+|+++|.++.+.
T Consensus 52 m~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l~~G~V~ 109 (148)
T PLN03136 52 MATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKVVSGSID 109 (148)
T ss_pred eeeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEecCcCc
Confidence 4568899876665 4789999999999999999999999999 99999999999987664
No 12
>PTZ00038 ferredoxin; Provisional
Probab=99.16 E-value=8.5e-11 Score=95.06 Aligned_cols=57 Identities=30% Similarity=0.428 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
-.++|+|..++|. +++++++|+||||+|+++||++|+.|+ .|.||+|+|+|.++.+.
T Consensus 94 ~~~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp~sCr-~G~CGtCkvrV~~GeV~ 150 (191)
T PTZ00038 94 LFYNITLQTPDGE-KVIECDEDEYILDAAERQGVELPYSCR-GGSCSTCAAKLLEGEVD 150 (191)
T ss_pred ceEEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEeEEeecccc
Confidence 4467888766663 789999999999999999999999999 59999999999987654
No 13
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.15 E-value=1e-10 Score=102.08 Aligned_cols=60 Identities=30% Similarity=0.410 Sum_probs=51.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
++..+++|++.+ +..+++++++|+||||+++++|+++|+.|+|.|.||||+|+|.++...
T Consensus 31 ~~~~~~~i~~~~--~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~ 90 (409)
T PRK05464 31 VPSGDVTIKING--DPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGD 90 (409)
T ss_pred ccCccEEEEEcC--CCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcC
Confidence 667888888742 223789999999999999999999999999889999999999887543
No 14
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.14 E-value=1.3e-10 Score=79.32 Aligned_cols=53 Identities=34% Similarity=0.537 Sum_probs=45.0
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
|+|. ..|+.+++++++|++||++++++|+++++.|+ .|.|++|+|+|.++...
T Consensus 1 v~~~-~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~-~g~Cg~C~v~v~~G~~~ 53 (84)
T cd00207 1 VTIN-VPGSGVEVEVPEGETLLDAAREAGIDIPYSCR-AGACGTCKVEVVEGEVD 53 (84)
T ss_pred CEEe-cCCCCEEEEECCCCcHHHHHHHcCCCcccCCC-CcCCcCCEEEEeeCccc
Confidence 3455 33556899999999999999999999999999 57999999999876654
No 15
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.01 E-value=9.5e-10 Score=93.84 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=47.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
+|++..++|...++++++|+||||+++++|+.+|++|+ .|.||+|+++|.++...
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~~~G~~~ 58 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRCESGIYS 58 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEEEeCccc
Confidence 45554467877889999999999999999999999999 89999999999887653
No 16
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=98.97 E-value=1.4e-09 Score=92.08 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
.+|+|. +.| +++++++|+||||+++++||++|++|+ .|.||+|+|++.++...
T Consensus 3 ~~v~~~-~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~ 55 (339)
T PRK07609 3 FQVTLQ-PSG--RQFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRLLEGEVE 55 (339)
T ss_pred EEEEEe-cCC--eEEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEEEECcEe
Confidence 468876 445 789999999999999999999999998 99999999999887654
No 17
>PRK05713 hypothetical protein; Provisional
Probab=98.95 E-value=1.1e-09 Score=92.29 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=41.2
Q ss_pred EEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 90 KNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
+++++++|+||||+|+++||++|+.|+ .|.||+|+|+|.++...
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~ 52 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCR-AGSCHACLVRCLQGEPE 52 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCC-CcCCCCCeEEEEeCccc
Confidence 789999999999999999999999999 79999999999887654
No 18
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=98.94 E-value=2.4e-09 Score=90.97 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCEEE-EEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 76 DMINVTFVDKDGEEKN-IKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~t-v~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
+..+|+|. .+|.... +.+++|+||||+++++||++|++|+ .|.|++|++.+.++...
T Consensus 261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~ 318 (352)
T TIGR02160 261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDLPFACK-GGVCGTCRAKVLEGKVD 318 (352)
T ss_pred CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCC-CccCCCCEEEEeccccc
Confidence 45678876 5675554 6789999999999999999999999 69999999999987654
No 19
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=98.87 E-value=7.1e-09 Score=87.86 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
...++|++.+ .| +++++++|+||||+|+++||++|++|+ .|.||+|++.+.++...
T Consensus 246 ~~~~~v~~~~-~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~ 301 (332)
T PRK10684 246 TSGLTFTKLQ-PA--REFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKVVSGEYT 301 (332)
T ss_pred CCceEEEEec-CC--EEEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEEecCccc
Confidence 4566787764 44 789999999999999999999999999 99999999999987665
No 20
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.66 E-value=3.4e-08 Score=69.35 Aligned_cols=50 Identities=34% Similarity=0.560 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCC---------CceecccEEEEEc
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG---------SLACSTCHVIVMV 130 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG---------~g~CgTChV~v~~ 130 (151)
++++|+| || +++++++|+|||+|+.++|+++|..|.. .|.|..|.|.|..
T Consensus 2 ~~v~i~i---dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g 60 (82)
T PF13510_consen 2 KMVTITI---DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDG 60 (82)
T ss_dssp EEEEEEE---TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESS
T ss_pred CEEEEEE---CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECC
Confidence 4556655 68 7899999999999999999999998884 4999999999964
No 21
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.58 E-value=1.1e-07 Score=77.99 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCC-----CCceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg-----G~g~CgTChV~v~~ 130 (151)
+++|++ || +++++++|+|||+||+++|+++|+.|. +.|.|+.|.|.|..
T Consensus 3 ~v~i~i---dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g 56 (234)
T PRK07569 3 VKTLTI---DD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEG 56 (234)
T ss_pred eEEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECC
Confidence 455554 67 679999999999999999999999997 68999999999954
No 22
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=98.57 E-value=4.8e-08 Score=88.97 Aligned_cols=54 Identities=30% Similarity=0.508 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
|+.|||. |.| +..+ ++|+++||+|++.|+.+.+.|||+|+||.|.|.|.+++..
T Consensus 1 ~p~v~f~-psg--kr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~ 54 (614)
T COG3894 1 MPLVTFM-PSG--KRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHK 54 (614)
T ss_pred CceeEee-cCC--CcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCce
Confidence 6789998 888 5566 9999999999999999999999999999999999987643
No 23
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=98.43 E-value=3.4e-07 Score=79.39 Aligned_cols=53 Identities=30% Similarity=0.480 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEc
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~ 130 (151)
..++|.+. +..+++.+++.|.+||.++..+||.++++|||.|+|+.|+|.|.+
T Consensus 35 gd~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ 87 (410)
T COG2871 35 GDITIKIN--GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKK 87 (410)
T ss_pred CceEEEeC--CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEec
Confidence 44566654 345689999999999999999999999999999999999999986
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.11 E-value=5.4e-06 Score=78.70 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCC-----CCceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg-----G~g~CgTChV~v~~ 130 (151)
|++|++ || .++++++|+|||++|+++||++|+.|. ..|+|.+|.|.|.+
T Consensus 1 ~~~i~i---dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~ 54 (847)
T PRK08166 1 MATIHV---DG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQ 54 (847)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEee
Confidence 566665 67 679999999999999999999999997 36999999999964
No 25
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.88 E-value=3.7e-05 Score=60.82 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCC-CCcCCCCCCceecccEEEEEc
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
++..|+|. .+|+.++++++++++||+.+++.|+ .....|+ .|.||.|-|.|..
T Consensus 5 ~~~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~-~G~CGACtVlvdg 58 (159)
T PRK09908 5 ETITIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCC-VGECGACTVLVDG 58 (159)
T ss_pred CceeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcC-CCCCCCcEEEECC
Confidence 34457776 6899999999999999999999876 4678998 8999999999964
No 26
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.80 E-value=3.9e-05 Score=65.95 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCchHHHHHHHCCCCCcCCCCC-----CceecccEEEEEc
Q 031881 76 DMINVTFVDKDGEEKNIKV-PVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVMV 130 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v-~~G~sLLdaa~~~gI~l~~aCgG-----~g~CgTChV~v~~ 130 (151)
..++|+ .|| +++++ ++|+||||||+++||+||.-|-- .|.|..|.|.|..
T Consensus 67 ~~~~I~---IDG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG 122 (297)
T PTZ00305 67 PRAIMF---VNK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDG 122 (297)
T ss_pred CceEEE---ECC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECC
Confidence 344454 378 89999 99999999999999999998863 4889999999854
No 27
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.76 E-value=5e-05 Score=71.23 Aligned_cols=49 Identities=33% Similarity=0.549 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCC-----CCceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg-----G~g~CgTChV~v~~ 130 (151)
|++|++ || +++++++|+||||||+++||+||..|- -.|.|..|.|.|..
T Consensus 1 m~~~~I---dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~ 54 (687)
T PRK09130 1 MVKLKV---DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKG 54 (687)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECC
Confidence 566765 67 799999999999999999999999995 36999999999964
No 28
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.68 E-value=8.2e-05 Score=70.64 Aligned_cols=51 Identities=31% Similarity=0.530 Sum_probs=44.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCC-----CCceecccEEEEEc
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMV 130 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg-----G~g~CgTChV~v~~ 130 (151)
.+|++|+| || +++++++|+||||+|..+||++|..|. ..|.|.-|.|.|..
T Consensus 2 ~~~v~~~i---dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g 57 (797)
T PRK07860 2 PDLVTLTI---DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEG 57 (797)
T ss_pred CceEEEEE---CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECC
Confidence 46777765 67 799999999999999999999999996 36999999999954
No 29
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.61 E-value=0.00011 Score=70.61 Aligned_cols=49 Identities=33% Similarity=0.536 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCC-----CCCceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----EGSLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aC-----gG~g~CgTChV~v~~ 130 (151)
|++|++ || +++++++|+|||++|+++||++|..| ...|+|..|.|.|..
T Consensus 1 mv~i~I---dG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G 54 (819)
T PRK08493 1 MITITI---NG--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADG 54 (819)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECC
Confidence 455554 68 78899999999999999999999766 457999999998853
No 30
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.59 E-value=0.0001 Score=68.35 Aligned_cols=49 Identities=29% Similarity=0.459 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCC-----CceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG-----~g~CgTChV~v~~ 130 (151)
+++|+ .|| +++++++|+|||+++.++|+.+|..|.. .|.|..|.|.|..
T Consensus 3 ~v~~~---idg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~g 56 (652)
T PRK12814 3 TISLT---ING--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKG 56 (652)
T ss_pred eEEEE---ECC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEECC
Confidence 44554 468 7899999999999999999999999973 7999999999864
No 31
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.54 E-value=0.00014 Score=68.61 Aligned_cols=49 Identities=41% Similarity=0.663 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCC-----CCCceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----EGSLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aC-----gG~g~CgTChV~v~~ 130 (151)
|++|++ || +++++++|+|||+||+++||+||+.| +=.|+|.-|.|.+..
T Consensus 1 m~tI~I---DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg 54 (693)
T COG1034 1 MVTITI---DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEG 54 (693)
T ss_pred CeEEEE---CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecC
Confidence 556654 68 89999999999999999999999876 446999999999976
No 32
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.54 E-value=0.0002 Score=59.17 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
.+|+|. .+|+.++++++++++||++++++ ++ .....|+ .|.||.|.|.|..
T Consensus 50 ~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-~G~CGACTVlVdG 102 (217)
T PRK11433 50 SPVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-HGQCGACTVLVNG 102 (217)
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-CCCcCceEEEECC
Confidence 456665 67988999999999999999985 54 3678898 8999999998753
No 33
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.41 E-value=0.0003 Score=55.11 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=40.4
Q ss_pred EEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 81 TFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 81 tfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
+|. .+|+.++++++++++|||.+++. |+ .....|+ .|.||+|-|.|..
T Consensus 3 ~~~-vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~-~G~CGACtVlvdg 52 (148)
T TIGR03193 3 RLT-VNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCD-GGECGACTVLVDG 52 (148)
T ss_pred EEE-ECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCC-CCCCCCCEEEECC
Confidence 443 46888999999999999999985 65 4678998 8999999999964
No 34
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.39 E-value=0.00032 Score=66.03 Aligned_cols=49 Identities=33% Similarity=0.592 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCC-----CceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG-----~g~CgTChV~v~~ 130 (151)
|++|++ || +++++++|+|||+|++++||++|+.|.- .|.|.-|.|.|..
T Consensus 1 m~~~~i---dg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~ 54 (776)
T PRK09129 1 MVEIEI---DG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEK 54 (776)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECC
Confidence 455654 68 7899999999999999999999999973 3789999999964
No 35
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.36 E-value=0.00027 Score=64.81 Aligned_cols=43 Identities=35% Similarity=0.563 Sum_probs=39.5
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCCCcCCCC-----CCceecccEEEEEc
Q 031881 86 DGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMV 130 (151)
Q Consensus 86 dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg-----G~g~CgTChV~v~~ 130 (151)
|| +++++++|+|||++|+++||++|..|. ..|+|..|.|.|..
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~g 51 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEK 51 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEECC
Confidence 67 899999999999999999999999995 46999999999964
No 36
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.21 E-value=0.00052 Score=65.77 Aligned_cols=51 Identities=39% Similarity=0.620 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCC-----CceecccEEEEEc
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVMV 130 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG-----~g~CgTChV~v~~ 130 (151)
.+|++|++ || .++++++|+|||+++.++||++|+.|-- -++|-||.|.+..
T Consensus 3 ~~~i~vti---dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG 58 (978)
T COG3383 3 EKMITVTI---DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDG 58 (978)
T ss_pred ceeEEEEE---CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecC
Confidence 35677775 67 7899999999999999999999999963 3899999999753
No 37
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.16 E-value=0.00077 Score=60.19 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=33.4
Q ss_pred EEEEeCCCchHHHHHHH------CCCCCcCCCCCCceecccEEEEE
Q 031881 90 KNIKVPVGMSMLEAAHE------NDIELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~------~gI~l~~aCgG~g~CgTChV~v~ 129 (151)
.++++++|+||||++.+ .++.++..|+ .|.||+|.|.|.
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v~ 67 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTIN 67 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEEC
Confidence 56777799999999995 5566789998 899999999984
No 38
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.06 E-value=0.0012 Score=51.73 Aligned_cols=49 Identities=12% Similarity=0.315 Sum_probs=41.0
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEEc
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~~ 130 (151)
|+|. .+|+.+++++.++++|++.+++. ++. ....|+ .|.||.|.|.|..
T Consensus 4 i~f~-vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~-~G~CGACtVlvdG 54 (151)
T TIGR03198 4 FRFT-VNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCG-IGRCGACSVLIDG 54 (151)
T ss_pred EEEE-ECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCC-CCcCCccEEEECC
Confidence 4554 57988999999999999999985 764 677898 8999999999965
No 39
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.03 E-value=0.0015 Score=51.62 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=42.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEEc
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~~ 130 (151)
.|+|. .+|+.+++++.++++||+++++. ++. ....|+ .|.||.|-|+|+.
T Consensus 3 ~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlvDG 54 (156)
T COG2080 3 PITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLVDG 54 (156)
T ss_pred cEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEECC
Confidence 45654 57999999999999999999965 553 568898 9999999999964
No 40
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.97 E-value=0.002 Score=55.64 Aligned_cols=42 Identities=17% Similarity=0.413 Sum_probs=36.5
Q ss_pred CEEEEEeCCCchHHHHHHHCCCCCc------CCCCCCceecccEEEEEc
Q 031881 88 EEKNIKVPVGMSMLEAAHENDIELE------GACEGSLACSTCHVIVMV 130 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~gI~l~------~aCgG~g~CgTChV~v~~ 130 (151)
+..+|++++|+||||++...+++++ .+|+ .|.||+|-|.|..
T Consensus 19 ~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~inG 66 (329)
T PRK12577 19 QTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRING 66 (329)
T ss_pred EEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEECC
Confidence 3478899999999999999998885 5698 6899999999964
No 41
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.95 E-value=0.0025 Score=54.00 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=35.2
Q ss_pred CEEEEEeCCCchHHHHHHHCCCCC------cCCCCCCceecccEEEEEc
Q 031881 88 EEKNIKVPVGMSMLEAAHENDIEL------EGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~gI~l------~~aCgG~g~CgTChV~v~~ 130 (151)
+..++++++|+||||++...+.++ ...|+ .|.||+|-|.|..
T Consensus 25 ~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~ING 72 (279)
T PRK12576 25 QEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKING 72 (279)
T ss_pred EEEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEECC
Confidence 347889999999999999976543 37897 9999999999965
No 42
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.83 E-value=0.0031 Score=52.92 Aligned_cols=42 Identities=17% Similarity=0.390 Sum_probs=35.4
Q ss_pred CEEEEEeCCCchHHHHHHHCCC------CCcCCCCCCceecccEEEEEc
Q 031881 88 EEKNIKVPVGMSMLEAAHENDI------ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~gI------~l~~aCgG~g~CgTChV~v~~ 130 (151)
+.+++++.+++||||++++-+. ....+|+ .|.||+|-|.|..
T Consensus 20 q~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~InG 67 (251)
T PRK12386 20 QDYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEING 67 (251)
T ss_pred EEEEEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCCCCEEEECc
Confidence 3478899999999999999553 4568998 9999999999975
No 43
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.82 E-value=0.0022 Score=52.57 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEEEeC-CCchHHHHHHHCC-CCC-----cCCCCCCceecccEEEEEc
Q 031881 89 EKNIKVP-VGMSMLEAAHEND-IEL-----EGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 89 ~~tv~v~-~G~sLLdaa~~~g-I~l-----~~aCgG~g~CgTChV~v~~ 130 (151)
.++++++ +|+||||++.+.+ ... ...|+ .|.||+|.|.|..
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vnG 66 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNING 66 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEECC
Confidence 4778888 9999999999987 333 47896 7999999999965
No 44
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=96.80 E-value=0.0033 Score=46.85 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=30.7
Q ss_pred EEEEeCCCchHHHHHHHC------CCCCcCCCCCCceecccEEEEEc
Q 031881 90 KNIKVPVGMSMLEAAHEN------DIELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~------gI~l~~aCgG~g~CgTChV~v~~ 130 (151)
.+|++.+++|+||++..- -+...++|+ .|.||+|.+.|..
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCGsCam~ING 66 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICGSCAMRING 66 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSSTTEEEETT
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCCCCEEEECC
Confidence 678999999999998742 244579999 8999999999965
No 45
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=96.75 E-value=0.0012 Score=53.49 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=33.2
Q ss_pred EEEEeCCCchHHHHHHHCC------CCCcCCCCCCceecccEEEEEc
Q 031881 90 KNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~g------I~l~~aCgG~g~CgTChV~v~~ 130 (151)
.++++++|+||||++.+.+ +.....|+ .|.||+|.|.|..
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vnG 62 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVNG 62 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEECC
Confidence 6788889999999999855 23458897 8999999999864
No 46
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=96.54 E-value=0.0037 Score=51.89 Aligned_cols=42 Identities=14% Similarity=0.418 Sum_probs=33.7
Q ss_pred CEEEEEeCCCchHHHHHHHC--C----CCCcCCCCCCceecccEEEEEc
Q 031881 88 EEKNIKVPVGMSMLEAAHEN--D----IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~--g----I~l~~aCgG~g~CgTChV~v~~ 130 (151)
+..+|++.+++|+||++..- . |....+|+ .|.||+|-+.|..
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCGsCam~ING 71 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICGSCAMVING 71 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCCCceeEECC
Confidence 34678888999999999853 2 33468999 8999999999975
No 47
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.51 E-value=0.0046 Score=60.40 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=39.5
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEc
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~ 130 (151)
|+|. .+|+.++++++++++||+.+++.|+- .-..|.|.|.||+|.|.|..
T Consensus 3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~dg 53 (956)
T PRK09800 3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFNG 53 (956)
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEECC
Confidence 5665 57989999999999999999995553 23334449999999999964
No 48
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.38 E-value=0.0089 Score=49.72 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=32.3
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCCcCCCCCCceecccEEEEEc
Q 031881 89 EKNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 89 ~~tv~v~~G~sLLdaa~~~g------I~l~~aCgG~g~CgTChV~v~~ 130 (151)
...+++.+|+||||++...+ +....+|+ .|.||+|.|.|..
T Consensus 26 ~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~InG 72 (244)
T PRK12385 26 TYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVNN 72 (244)
T ss_pred EEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCCCCcceECc
Confidence 46678889999999995532 23457998 7999999999974
No 49
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=96.30 E-value=0.006 Score=52.04 Aligned_cols=61 Identities=11% Similarity=0.310 Sum_probs=41.4
Q ss_pred CCCCCCCCceEEEEE--cCCC------CEEEEEeCC-CchHHHHHHHC--C----CCCcCCCCCCceecccEEEEEc
Q 031881 69 HGSNKQKDMINVTFV--DKDG------EEKNIKVPV-GMSMLEAAHEN--D----IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 69 ~~~~~~~~~v~Vtfi--~~dG------~~~tv~v~~-G~sLLdaa~~~--g----I~l~~aCgG~g~CgTChV~v~~ 130 (151)
..+|++.++++|.+. |++. +..+|++.+ |+|+||++..- . |....+|+ .|.||+|-+.|..
T Consensus 35 ~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~ING 110 (276)
T PLN00129 35 SKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNIDG 110 (276)
T ss_pred CCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEECC
Confidence 356677777776643 4432 223555544 79999998752 2 23468999 8999999999975
No 50
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.19 E-value=0.0077 Score=50.33 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=33.4
Q ss_pred CEEEEEeCCCchHHHHHHHC--C-----------CCCcCCCCCCceecccEEEEEc
Q 031881 88 EEKNIKVPVGMSMLEAAHEN--D-----------IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~--g-----------I~l~~aCgG~g~CgTChV~v~~ 130 (151)
++.+|++.+++|+||++..- . |...++|+ .|.||+|-+.|..
T Consensus 23 q~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~ING 77 (249)
T PRK08640 23 EEFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVING 77 (249)
T ss_pred EEEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEECC
Confidence 34678888999999998842 1 33468999 8999999999975
No 51
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.10 E-value=0.0073 Score=54.59 Aligned_cols=43 Identities=23% Similarity=0.518 Sum_probs=37.8
Q ss_pred CCCCEEEE-EeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEE
Q 031881 85 KDGEEKNI-KVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIV 128 (151)
Q Consensus 85 ~dG~~~tv-~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v 128 (151)
.+|+.+++ +++++++||+.++++ |+ .....|+ .|.||.|-|.|
T Consensus 5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~-~G~CGaCtv~~ 50 (467)
T TIGR02963 5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCA-EGDCGACTVVV 50 (467)
T ss_pred ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccC-CCCCCceEEEE
Confidence 46888899 699999999999985 76 4678998 89999999999
No 52
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.67 E-value=0.016 Score=56.68 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=37.9
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCC-CcC-CCCCCceecccEEEEEc
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHENDIE-LEG-ACEGSLACSTCHVIVMV 130 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~-aCgG~g~CgTChV~v~~ 130 (151)
.+|+.++++++++++||+.+++.|+- ... .|+ .|.||.|.|.|..
T Consensus 3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~dg 49 (951)
T TIGR03313 3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILFNG 49 (951)
T ss_pred ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEECC
Confidence 36888999999999999999998764 444 565 9999999999964
No 53
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=95.22 E-value=0.026 Score=47.27 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=32.3
Q ss_pred EEEEEeCCCchHHHHHHHC------CCCCcCCCCCCceecccEEEEEc
Q 031881 89 EKNIKVPVGMSMLEAAHEN------DIELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 89 ~~tv~v~~G~sLLdaa~~~------gI~l~~aCgG~g~CgTChV~v~~ 130 (151)
+.+|++.+|+++||++..- .+....+|+ .|.||+|-+.|..
T Consensus 21 ~yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~ING 67 (234)
T COG0479 21 TYEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICGSCAMNING 67 (234)
T ss_pred EEEecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCCcceeEECC
Confidence 3566777999999998742 234568999 8999999999965
No 54
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=95.16 E-value=0.029 Score=47.00 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=32.5
Q ss_pred EEEE-eCCCchHHHHHHHC----------CCCCcCCCCCCceecccEEEEEcC
Q 031881 90 KNIK-VPVGMSMLEAAHEN----------DIELEGACEGSLACSTCHVIVMVH 131 (151)
Q Consensus 90 ~tv~-v~~G~sLLdaa~~~----------gI~l~~aCgG~g~CgTChV~v~~~ 131 (151)
.+|+ +.+++|+||++..- .|....+|+ .|.||+|-+.|...
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~ING~ 73 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVINGR 73 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEECCc
Confidence 5666 66899999999732 245579999 89999999999764
No 55
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=94.15 E-value=0.09 Score=49.07 Aligned_cols=51 Identities=27% Similarity=0.486 Sum_probs=42.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCC-----CceecccEEEEEc
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVMV 130 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG-----~g~CgTChV~v~~ 130 (151)
.+.+.| |+ || +.|.|++|.|+|+++...|++||-.|-- .|.|-.|.|.|+.
T Consensus 30 ~~~iev-fv--d~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 30 PNKIEV-FV--DD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred ccceEE-EE--CC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 566676 55 45 6899999999999999999999999964 3889999998863
No 56
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=93.95 E-value=0.089 Score=50.88 Aligned_cols=43 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred CCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
.+| .++++.++++||+.+++. |+ .....|+ .|.||.|.|.|..
T Consensus 5 ~ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~-~g~cgactv~~dg 49 (848)
T TIGR03311 5 VNG--REVDVNEEKKLLEFLREDLRLTGVKNGCG-EGACGACTVIVNG 49 (848)
T ss_pred ECC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCC-CCCCCCcEEEECC
Confidence 356 378889999999999974 76 5788998 8999999999954
No 57
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.90 E-value=0.072 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=39.2
Q ss_pred EEEEcCCCCEE-EEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEE
Q 031881 80 VTFVDKDGEEK-NIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 80 Vtfi~~dG~~~-tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~ 129 (151)
|+|. .+|+.+ ..+++++++||+.++++ |+ .....|+ .|.||.|-|.|.
T Consensus 3 ~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~-~G~CGaCtV~~~ 53 (1330)
T TIGR02969 3 LLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCG-GGGCGACTVMIS 53 (1330)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcC-CCCCCCcEEEEC
Confidence 5555 568765 45899999999999985 76 4678898 899999999996
No 58
>PLN00192 aldehyde oxidase
Probab=93.66 E-value=0.11 Score=52.72 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=40.1
Q ss_pred EEEEcCCCCEEEE-EeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEE
Q 031881 80 VTFVDKDGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 80 Vtfi~~dG~~~tv-~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~ 129 (151)
|+|. .+|+.+++ ++.++++||+.++++ |+- ....|+ .|.||.|-|.|.
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 6 LVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCC-CCcCCCcEEEEe
Confidence 5554 57888888 699999999999985 764 678898 999999999994
No 59
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=92.17 E-value=0.14 Score=42.57 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=28.9
Q ss_pred EEEEeCC-CchHHHHHHHCC-----CCCcCCCCCCceecccEEEEEc
Q 031881 90 KNIKVPV-GMSMLEAAHEND-----IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 90 ~tv~v~~-G~sLLdaa~~~g-----I~l~~aCgG~g~CgTChV~v~~ 130 (151)
.+|++.+ ++|+||++..-. |...++|+ .|.||+|-+.|..
T Consensus 25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCGsCa~~iNG 70 (235)
T PRK12575 25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICGSDAMNING 70 (235)
T ss_pred EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCCCCeeEECC
Confidence 4455555 468998887522 23458999 8999999999975
No 60
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=80.38 E-value=3 Score=40.91 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=37.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCc-----------CCCCCCceecccEEEEEc
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE-----------GACEGSLACSTCHVIVMV 130 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~-----------~aCgG~g~CgTChV~v~~ 130 (151)
.|+|. -|| +.+++.+|+||..|+..+|+.+- .-|. .+.|..|.|.|..
T Consensus 12 ~~~~~-~dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~ 70 (985)
T TIGR01372 12 PLRFT-FDG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGS 70 (985)
T ss_pred eEEEE-ECC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECC
Confidence 34443 478 78999999999999999997542 2486 6789999999964
No 61
>PRK13669 hypothetical protein; Provisional
Probab=79.83 E-value=1.3 Score=31.45 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=33.1
Q ss_pred HHHHHH-CCCC-CcCCCCCCceecccEEE----EEcCCCCCCChhhhhhhhhhc
Q 031881 101 LEAAHE-NDIE-LEGACEGSLACSTCHVI----VMVHYWPYMCRDNVLSNIFKN 148 (151)
Q Consensus 101 Ldaa~~-~gI~-l~~aCgG~g~CgTChV~----v~~~~l~~~~~~E~L~~~~~~ 148 (151)
++.+++ -+++ ++..|- +.||.|+.. |..+.....++||.++.|.+.
T Consensus 20 ~~~Le~dP~~dVie~gCl--s~CG~C~~~~FAlVng~~V~a~t~eeL~~kI~~~ 71 (78)
T PRK13669 20 FEKLEKDPNLDVLEYGCL--GYCGICSEGLFALVNGEVVEGETPEELVENIYAH 71 (78)
T ss_pred HHHHHhCCCceEEEcchh--hhCcCcccCceEEECCeEeecCCHHHHHHHHHHH
Confidence 443432 3566 789998 899999864 444556788999999888764
No 62
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=77.66 E-value=5.2 Score=27.57 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=27.0
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecc-cEEEEE
Q 031881 84 DKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACST-CHVIVM 129 (151)
Q Consensus 84 ~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgT-ChV~v~ 129 (151)
-|||+...|.+.+|+|+.|++. .+|.-.+.... |.|++.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~-------~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLA-------KACKKRGLNPECCDVFLL 45 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHH-------HHHHHcCCCHHHEEEEEe
Confidence 3899999999999999999854 34444444433 445555
No 63
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=76.45 E-value=6.4 Score=35.91 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=38.4
Q ss_pred ceEEEEEcCCCCEEEE-EeCCCchHHHHHH-HCCCC-CcCCCCCCceecccEEEEE
Q 031881 77 MINVTFVDKDGEEKNI-KVPVGMSMLEAAH-ENDIE-LEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv-~v~~G~sLLdaa~-~~gI~-l~~aCgG~g~CgTChV~v~ 129 (151)
+-.|.|+ .+|+...+ ++++.+||||-++ +.++- -...|. .|-||.|.|.|-
T Consensus 6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCA-EGDCGACTVlVg 59 (493)
T COG4630 6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCA-EGDCGACTVLVG 59 (493)
T ss_pred cceeEEE-ecCceEEeecCCcchHHHHHHHHhccccccccccc-CCCcCceEEEEE
Confidence 3456666 46765554 7889999999998 56664 456787 899999999885
No 64
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=72.00 E-value=8.1 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~ 106 (151)
+.|.+ |||+...+.+.+|+|+-|++..
T Consensus 3 ~~v~L--P~~q~t~V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 3 CRVHL--PNGQRTVVQVRPGMTIRDALSK 29 (71)
T ss_dssp EEEEE--TTTEEEEEEE-TTSBHHHHHHH
T ss_pred EEEEC--CCCCEEEEEEcCCCCHHHHHHH
Confidence 34544 8999999999999999988553
No 65
>smart00455 RBD Raf-like Ras-binding domain.
Probab=69.88 E-value=11 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.4
Q ss_pred cCCCCEEEEEeCCCchHHHHHH
Q 031881 84 DKDGEEKNIKVPVGMSMLEAAH 105 (151)
Q Consensus 84 ~~dG~~~tv~v~~G~sLLdaa~ 105 (151)
-|||+...|.+.+|++|.|++.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~ 27 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALA 27 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHH
Confidence 3899999999999999999854
No 66
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=68.91 E-value=12 Score=25.46 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCCc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIELE 112 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l~ 112 (151)
|+.|+|.+..|+...+++++.+|+-+. +.+.|++.+
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~ 40 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPE 40 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 678999988899999999999988764 233466543
No 67
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=67.61 E-value=3.4 Score=29.14 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=34.7
Q ss_pred chHHHHHHHC-CCC-CcCCCCCCceecccEEE----EEcCCCCCCChhhhhhhhhhc
Q 031881 98 MSMLEAAHEN-DIE-LEGACEGSLACSTCHVI----VMVHYWPYMCRDNVLSNIFKN 148 (151)
Q Consensus 98 ~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~----v~~~~l~~~~~~E~L~~~~~~ 148 (151)
+.+++.+++. +++ +++.|- +.||.|... |..+.....+++|+++.|.+.
T Consensus 17 ~~~~~~Le~~p~~~Vie~gCl--~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~ 71 (78)
T PF07293_consen 17 DQVYEKLEKDPDIDVIEYGCL--SYCGPCAKKPFALVNGEIVAAETAEELLEKIKEK 71 (78)
T ss_pred HHHHHHHhcCCCccEEEcChh--hhCcCCCCCccEEECCEEEecCCHHHHHHHHHHH
Confidence 4467766643 555 379997 899999864 434556788889988888764
No 68
>PLN02906 xanthine dehydrogenase
Probab=65.34 E-value=6.6 Score=40.11 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=27.0
Q ss_pred CchHHHHHHHCCC-CCcCCCCCCceecccEEEEEc
Q 031881 97 GMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 97 G~sLLdaa~~~gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
+++||+.+++.|+ .....|+ .|.||.|-|.|.+
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~-~g~CGaCtv~~~~ 34 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCG-EGGCGACTVMVSH 34 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcC-CCCCCCeEEEECC
Confidence 4689999998555 3567898 8999999999973
No 69
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=65.32 E-value=9.6 Score=24.82 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=23.7
Q ss_pred EcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCC
Q 031881 83 VDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE 116 (151)
Q Consensus 83 i~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg 116 (151)
..|||. ..+++.|.|.+|+|..-+-++...|-
T Consensus 4 ~lpdG~--~~~~~~g~T~~d~A~~I~~~l~~~~~ 35 (60)
T PF02824_consen 4 YLPDGS--IKELPEGSTVLDVAYSIHSSLAKRAV 35 (60)
T ss_dssp EETTSC--EEEEETTBBHHHHHHHHSHHHHHCEE
T ss_pred ECCCCC--eeeCCCCCCHHHHHHHHCHHHHhhee
Confidence 339995 45689999999999987655555544
No 70
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=64.31 E-value=11 Score=26.78 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=20.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAH 105 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~ 105 (151)
+|.+ |||+..++.+.+|+|++|++.
T Consensus 3 ~V~l--Pn~~~~~v~vrp~~tv~dvLe 27 (77)
T cd01818 3 WVCL--PDNQPVLTYLRPGMSVEDFLE 27 (77)
T ss_pred EEEC--CCCceEEEEECCCCCHHHHHH
Confidence 3444 789999999999999999754
No 71
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=63.17 E-value=5.1 Score=32.64 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=22.6
Q ss_pred chHHHHHHHCCCC---C-----cCCCCCCceecccEEE
Q 031881 98 MSMLEAAHENDIE---L-----EGACEGSLACSTCHVI 127 (151)
Q Consensus 98 ~sLLdaa~~~gI~---l-----~~aCgG~g~CgTChV~ 127 (151)
+.+.+++.+.|++ + +.-|.|.|.|++|.|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 3677888888986 3 2445569999999986
No 72
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=61.96 E-value=5.6 Score=31.76 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=23.0
Q ss_pred chHHHHHHHCCCCC------cCCCCCCceecccEEEEE
Q 031881 98 MSMLEAAHENDIEL------EGACEGSLACSTCHVIVM 129 (151)
Q Consensus 98 ~sLLdaa~~~gI~l------~~aCgG~g~CgTChV~v~ 129 (151)
+.+.+++++.|++. -..|| .|.|++|.|...
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 36777777888742 25676 999999999863
No 73
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=59.64 E-value=5.9 Score=32.07 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=22.2
Q ss_pred hHHHHHHHCCCCC------cCCCCCCceecccEEEEEc
Q 031881 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 99 sLLdaa~~~gI~l------~~aCgG~g~CgTChV~v~~ 130 (151)
.+.+++.++|++. .-.|| .|.|++|.|.+..
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~ 231 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCG-IGACGACVCDTET 231 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCc-CcccCcCCcccCC
Confidence 4666677788753 24565 9999999998654
No 74
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=59.53 E-value=39 Score=23.31 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 031881 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (151)
Q Consensus 71 ~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~ 106 (151)
.+.....+.|.+.+.+|...++.+...++|-++..+
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~ 40 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEA 40 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHH
Confidence 346667888889999999999999999987776543
No 75
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=59.29 E-value=15 Score=25.89 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCchHHHHHHHC
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHEN 107 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~ 107 (151)
|+.+...|++.+|++|-|++.++
T Consensus 7 PnqQrT~V~vrpG~tl~daL~Ka 29 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKA 29 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHH
Confidence 66777889999999998876653
No 76
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=55.20 E-value=35 Score=22.73 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
.|++|++... +...++++++|.|+.|.+.+-+++.
T Consensus 3 ~mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 3 LMIRVKVIGR-GIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred eEEEEEEecc-ccceEEEcCCCCcHHHHHHHcCCCC
Confidence 5678877532 2356888899999999999988864
No 77
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=54.71 E-value=16 Score=26.09 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCE-EEEEeCCCchHHHHHHHCCCC
Q 031881 78 INVTFVDKDGEE-KNIKVPVGMSMLEAAHENDIE 110 (151)
Q Consensus 78 v~Vtfi~~dG~~-~tv~v~~G~sLLdaa~~~gI~ 110 (151)
+.|.+-.++.+. .++++++|.|+.||+++.||.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 455555555433 579999999999999999973
No 78
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=54.43 E-value=7.5 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=19.9
Q ss_pred hHHHHHHHCCCCCc--------CCCCCCceecccEEE
Q 031881 99 SMLEAAHENDIELE--------GACEGSLACSTCHVI 127 (151)
Q Consensus 99 sLLdaa~~~gI~l~--------~aCgG~g~CgTChV~ 127 (151)
.+.+.+.+.|++-+ .-|.|.|.|+.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 45666777888522 234459999999875
No 79
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=54.42 E-value=10 Score=30.62 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.4
Q ss_pred hHHHHHHHCCCCCc------CCCCCCceecccEEEE
Q 031881 99 SMLEAAHENDIELE------GACEGSLACSTCHVIV 128 (151)
Q Consensus 99 sLLdaa~~~gI~l~------~aCgG~g~CgTChV~v 128 (151)
.+.+.+.++|+++. -.|| -|.|+.|.|..
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 46677778888753 5676 99999999975
No 80
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=52.72 E-value=11 Score=31.38 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=22.1
Q ss_pred hHHHHHHHCCCCCc------CCCCCCceecccEEEE
Q 031881 99 SMLEAAHENDIELE------GACEGSLACSTCHVIV 128 (151)
Q Consensus 99 sLLdaa~~~gI~l~------~aCgG~g~CgTChV~v 128 (151)
.+.+.+.++|+++. -+|| -|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~ 229 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTV 229 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccCc-ccccceeEEEE
Confidence 45677778888642 6786 99999999964
No 81
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=49.94 E-value=18 Score=29.24 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=23.6
Q ss_pred hHHHHHHHCCCCC------cCCCCCCceecccEEEEEc
Q 031881 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 99 sLLdaa~~~gI~l------~~aCgG~g~CgTChV~v~~ 130 (151)
.+.+++++.|++- ...|+ .|.|++|.+...+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCc-cceecccEEEeec
Confidence 5666777888863 24565 8999999999875
No 82
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=48.23 E-value=39 Score=21.55 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
++|.+.+.+|+..++++.+.+|+-+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~l 26 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDL 26 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 35777778899999999999987765
No 83
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=47.44 E-value=22 Score=24.00 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=16.1
Q ss_pred EcCCCCEEEEEeCCCchHHHHHHHC
Q 031881 83 VDKDGEEKNIKVPVGMSMLEAAHEN 107 (151)
Q Consensus 83 i~~dG~~~tv~v~~G~sLLdaa~~~ 107 (151)
+..++...+|.+.++++|.|++.++
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHH
T ss_pred CccCCcEEEEEECCCCCHHHHHHHH
Confidence 3478888999999999988877653
No 84
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=47.23 E-value=9.7 Score=31.77 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=25.3
Q ss_pred chHHHHHHHCCCC---C------cCCCCCCceecccEEEEEcC
Q 031881 98 MSMLEAAHENDIE---L------EGACEGSLACSTCHVIVMVH 131 (151)
Q Consensus 98 ~sLLdaa~~~gI~---l------~~aCgG~g~CgTChV~v~~~ 131 (151)
+.+.+.+.+.|++ + .-.|| .|.|+.|+|...++
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 4677778888885 2 25798 99999999997554
No 85
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=46.42 E-value=30 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.5
Q ss_pred cCCCCEEEEEeCCCchHHHHHH
Q 031881 84 DKDGEEKNIKVPVGMSMLEAAH 105 (151)
Q Consensus 84 ~~dG~~~tv~v~~G~sLLdaa~ 105 (151)
-|||+...|.+.+|+||-|++.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~ 27 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLS 27 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHH
Confidence 3899999999999998877644
No 86
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=45.55 E-value=66 Score=23.22 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHH----HHHHCCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLE----AAHENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLd----aa~~~gI~l 111 (151)
.+...|++....|+..++++.+.+|+-+ ++...|++.
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~ 65 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPV 65 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 4567899998999999999999999887 334456544
No 87
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=45.51 E-value=12 Score=22.90 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=13.5
Q ss_pred CCCCCCceecccEEEEEcC
Q 031881 113 GACEGSLACSTCHVIVMVH 131 (151)
Q Consensus 113 ~aCgG~g~CgTChV~v~~~ 131 (151)
-+|| -|.|+.|.+...++
T Consensus 4 M~CG-~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACG-VGACGGCVVPVKDG 21 (40)
T ss_dssp -SSS-SSSS-TTEEECSST
T ss_pred ccCC-CcEeCCcEeeeecC
Confidence 3687 99999999988754
No 88
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=45.18 E-value=46 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+|++.+.+|+..++++.+.+|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777778899999999999988775
No 89
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=44.86 E-value=12 Score=30.78 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=20.5
Q ss_pred hHHHHHHHCCCCCc---------CCCCCCceecccEEE
Q 031881 99 SMLEAAHENDIELE---------GACEGSLACSTCHVI 127 (151)
Q Consensus 99 sLLdaa~~~gI~l~---------~aCgG~g~CgTChV~ 127 (151)
.+.+.+++.|++-. -.|| .|.|++|.|.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 55666778888632 3565 9999999976
No 90
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=44.62 E-value=47 Score=21.43 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=21.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+|++.+.+|+...+++.+.+|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHH
Confidence 5778888899999999999988765
No 91
>PRK01777 hypothetical protein; Validated
Probab=43.78 E-value=71 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=25.7
Q ss_pred ceEEE--EEcCCC-CEEEEEeCCCchHHHHHHHCCCCCc
Q 031881 77 MINVT--FVDKDG-EEKNIKVPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 77 ~v~Vt--fi~~dG-~~~tv~v~~G~sLLdaa~~~gI~l~ 112 (151)
|++|+ +-.++. ...++++++|.|+-|++.+.||..+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCcc
Confidence 44444 333443 2367899999999999999999544
No 92
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=43.46 E-value=13 Score=21.18 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.6
Q ss_pred eCCCchHHHHHHHCCCCCc
Q 031881 94 VPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 94 v~~G~sLLdaa~~~gI~l~ 112 (151)
+.+|+||-++|.+.|++++
T Consensus 1 v~~gdtl~~IA~~~~~~~~ 19 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFD 19 (44)
T ss_pred CCCCCCHHHHHHHHCcCHH
Confidence 4679999999999988654
No 93
>PTZ00044 ubiquitin; Provisional
Probab=43.33 E-value=51 Score=21.56 Aligned_cols=32 Identities=6% Similarity=0.221 Sum_probs=24.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIE 110 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~ 110 (151)
+|.+.+.+|...++++.+.+|+-++ ....|++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~ 37 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID 37 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 5777788999999999999998774 3344554
No 94
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=42.40 E-value=54 Score=21.10 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAA 104 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa 104 (151)
+|++.+.+|+...+++.+.+|+-+.-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIK 27 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHH
Confidence 57788889998999999998886643
No 95
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=42.35 E-value=54 Score=21.59 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=21.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+|++...+|+..++++.+.+|+-+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~l 26 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTL 26 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777778999999999999988773
No 96
>PRK06437 hypothetical protein; Provisional
Probab=41.53 E-value=65 Score=21.37 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCCC
Q 031881 86 DGEEKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 86 dG~~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
.+.+++++++++.|+.|.+.+.|++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCCC
Confidence 45668899999999999999998863
No 97
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=40.22 E-value=62 Score=21.31 Aligned_cols=32 Identities=6% Similarity=0.208 Sum_probs=23.7
Q ss_pred EEEEcCCCCEEEEEeCCCchHHH----HHHHCCCCC
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLE----AAHENDIEL 111 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLd----aa~~~gI~l 111 (151)
|.+...+|+..++++.+.+|+.+ ++...|++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~ 36 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQA 36 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCH
Confidence 34567889989999999999988 444456543
No 98
>PRK07440 hypothetical protein; Provisional
Probab=40.06 E-value=69 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~ 112 (151)
+++|++ +| +..+++++.||.+.+.+.+++..
T Consensus 4 ~m~i~v---NG--~~~~~~~~~tl~~lL~~l~~~~~ 34 (70)
T PRK07440 4 PITLQV---NG--ETRTCSSGTSLPDLLQQLGFNPR 34 (70)
T ss_pred ceEEEE---CC--EEEEcCCCCCHHHHHHHcCCCCC
Confidence 566665 36 56788999999999998888643
No 99
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=39.84 E-value=22 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=13.1
Q ss_pred EeCCCchHHHHHHHCCCCC
Q 031881 93 KVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 93 ~v~~G~sLLdaa~~~gI~l 111 (151)
.|.+|||+-.+|.+.|+..
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 5789999999999998864
No 100
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=39.20 E-value=25 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=22.6
Q ss_pred hHHHHHHHCCCCC------cCCCCCCceecccEEEE
Q 031881 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIV 128 (151)
Q Consensus 99 sLLdaa~~~gI~l------~~aCgG~g~CgTChV~v 128 (151)
.+.+.+.+.|++. .-.|| -|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 4567777889875 46786 99999999964
No 101
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=39.01 E-value=30 Score=18.73 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.2
Q ss_pred EEEeCCCchHHHHHHHCCCCC
Q 031881 91 NIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 91 tv~v~~G~sLLdaa~~~gI~l 111 (151)
+..+..|+++-+++.+.++.+
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 457789999999999988764
No 102
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=38.49 E-value=49 Score=21.26 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=19.9
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCCC
Q 031881 86 DGEEKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 86 dG~~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
+| ..+++++|.||.+++.+.|++.
T Consensus 6 NG--~~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 6 NG--EPRELPDGESVAALLAREGLAG 29 (66)
T ss_pred CC--eEEEcCCCCCHHHHHHhcCCCC
Confidence 46 5678889999999999988864
No 103
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=37.62 E-value=34 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.418 Sum_probs=27.2
Q ss_pred EEEeCC-CchHHHHHHHC--CCC----CcCCCCCCceecccEEEEEc
Q 031881 91 NIKVPV-GMSMLEAAHEN--DIE----LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 91 tv~v~~-G~sLLdaa~~~--gI~----l~~aCgG~g~CgTChV~v~~ 130 (151)
+|+... |--+|||+..- .+| .--+|+ .|.||+|..-|..
T Consensus 69 ~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~G 114 (288)
T KOG3049|consen 69 EVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNING 114 (288)
T ss_pred eecHHhcchHHHHHHHHhhcccCCceehhhhhh-ccccccceeccCC
Confidence 444443 78899999864 333 136899 8999999877654
No 104
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=35.84 E-value=83 Score=19.02 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=22.8
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCCC
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
|++. -||++.++. ....|+=+++.++||.+
T Consensus 2 Vtv~-~dG~~~~v~-T~a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 2 VTVT-VDGKEKTVY-TTASTVGDALKELGITL 31 (43)
T ss_pred EEEE-ECCEEEEEE-eCCCCHHHHHHhCCCCC
Confidence 5555 478766655 45789999999999986
No 105
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=35.12 E-value=92 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
++|++....|+..++++++.+|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 47888888898899999999988764
No 106
>PRK05802 hypothetical protein; Provisional
Probab=34.75 E-value=31 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=21.0
Q ss_pred HHHHHHH--CCCCC------cCCCCCCceecccEEEEE
Q 031881 100 MLEAAHE--NDIEL------EGACEGSLACSTCHVIVM 129 (151)
Q Consensus 100 LLdaa~~--~gI~l------~~aCgG~g~CgTChV~v~ 129 (151)
+.+.+.+ .+|++ --.|| -|.|+.|.|...
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 5555555 67754 35676 999999999964
No 107
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=33.98 E-value=1.1e+02 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=21.6
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHH
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~ 106 (151)
|.|.-.||..+++.+.+.+|..|++..
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~ 31 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQL 31 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHH
Confidence 334447899999999999999988764
No 108
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=33.06 E-value=79 Score=20.09 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHCCCCCcCC
Q 031881 90 KNIKVPVGMSMLEAAHENDIELEGA 114 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~l~~a 114 (151)
-.++++.|+||.|++..+|-..+.+
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~a 36 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPRA 36 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTTB
T ss_pred EEEEECCCCcHHHHHHHhCCCCCCc
Confidence 5788899999999999987655543
No 109
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=32.93 E-value=26 Score=22.53 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=11.2
Q ss_pred cCCCCCCceecccEEEE
Q 031881 112 EGACEGSLACSTCHVIV 128 (151)
Q Consensus 112 ~~aCgG~g~CgTChV~v 128 (151)
|..|-|+| |..|.-.+
T Consensus 15 p~~CCgSG-C~~CVwd~ 30 (48)
T PF09791_consen 15 PDECCGSG-CAPCVWDV 30 (48)
T ss_pred cccccccC-CccchhHH
Confidence 46677788 98886443
No 110
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=31.23 E-value=1e+02 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+.|++....|+..++++.+.+|+-+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHH
Confidence 47888888898888999999887764
No 111
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=29.53 E-value=1.2e+02 Score=21.11 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCEEEEEe--CCCchHHHHH
Q 031881 78 INVTFVDKDGEEKNIKV--PVGMSMLEAA 104 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v--~~G~sLLdaa 104 (151)
++|++..++|.+.++++ .+.+|+.+.=
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK 30 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELK 30 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHH
Confidence 57888888998755555 7889998864
No 112
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=29.53 E-value=93 Score=19.79 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAA 104 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa 104 (151)
++|++.+. |+..++++.+.+|+-+.-
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK 26 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLK 26 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHH
Confidence 46777764 877889999999887643
No 113
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=29.31 E-value=88 Score=32.29 Aligned_cols=44 Identities=16% Similarity=0.444 Sum_probs=32.7
Q ss_pred CCCEEEE-EeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEEc
Q 031881 86 DGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 86 dG~~~tv-~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~~ 130 (151)
+|+...+ .++++.||++-++++ ++- ....|+ .|-||.|-|.|..
T Consensus 8 NG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~-EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 8 NGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCG-EGGCGACTVVLSK 54 (1257)
T ss_pred CCEEeeEecCCcchhHHHHHHHhcCCcceeeccC-CCCccceEEEEec
Confidence 4655443 367788999987775 553 578898 8999999999854
No 114
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=28.94 E-value=55 Score=22.90 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=13.5
Q ss_pred EEEEeCCCchHHHHHHHCCCCC
Q 031881 90 KNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~l 111 (151)
+++.|+.|+||-.+..++|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 5788999999999999999863
No 115
>smart00257 LysM Lysin motif.
Probab=28.03 E-value=63 Score=17.04 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.1
Q ss_pred EEeCCCchHHHHHHHCCCCC
Q 031881 92 IKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 92 v~v~~G~sLLdaa~~~gI~l 111 (151)
+.+.+|+++-+++.+.+++.
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 46788999999998887753
No 116
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=27.80 E-value=1.6e+02 Score=19.47 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+..+.+.|.|.-+||...+-.....++|-++
T Consensus 2 ~~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l 32 (82)
T PF00789_consen 2 EESDVVRIQVRLPDGSRLQRRFPKSDTLQDL 32 (82)
T ss_dssp STSSEEEEEEEETTSTEEEEEEETTSBHHHH
T ss_pred CCCCEEEEEEECCCCCEEEEEECCcchHHHH
Confidence 3456777777779999888899998876544
No 117
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=27.43 E-value=32 Score=29.17 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=18.0
Q ss_pred hHHHHHHHCCCCCcCCCCC
Q 031881 99 SMLEAAHENDIELEGACEG 117 (151)
Q Consensus 99 sLLdaa~~~gI~l~~aCgG 117 (151)
-|+++|.+.|+|+-+.|+|
T Consensus 98 aLi~~ALe~~iPILgICRG 116 (243)
T COG2071 98 ALIRAALERGIPILGICRG 116 (243)
T ss_pred HHHHHHHHcCCCEEEEccc
Confidence 4999999999999999998
No 118
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=27.23 E-value=18 Score=27.22 Aligned_cols=26 Identities=35% Similarity=0.699 Sum_probs=22.0
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHCCC
Q 031881 84 DKDGEEKNIKVPVGMSMLEAAHENDI 109 (151)
Q Consensus 84 ~~dG~~~tv~v~~G~sLLdaa~~~gI 109 (151)
-..|..+++..|+|++++|+..+.+|
T Consensus 87 L~~GAdrt~~~PdG~~~~eate~edI 112 (117)
T KOG4214|consen 87 LQNGADRTIHAPDGTALIEATEEEDI 112 (117)
T ss_pred HHcCcccceeCCCchhHHhhccHHHH
Confidence 35688899999999999999887665
No 119
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=26.92 E-value=1.1e+02 Score=19.86 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=18.8
Q ss_pred EEEcCCCCEEEEEeCCCchHHHH
Q 031881 81 TFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 81 tfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+.+.+|...++++.+.+|+-+.
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~l 24 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQL 24 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHH
Confidence 45667899999999999988773
No 120
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=26.72 E-value=1e+02 Score=19.81 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCCCc
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIELE 112 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~----~~gI~l~ 112 (151)
++|++...+|+...+.+.+.+++-.... +.|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~ 39 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE 39 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc
Confidence 4677888899889999999986555443 3466654
No 121
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=25.99 E-value=59 Score=32.42 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=21.7
Q ss_pred hHHHHHHHCCCC----Cc--CCCCCCceecccEEEEE
Q 031881 99 SMLEAAHENDIE----LE--GACEGSLACSTCHVIVM 129 (151)
Q Consensus 99 sLLdaa~~~gI~----l~--~aCgG~g~CgTChV~v~ 129 (151)
.+.+++.+.||+ ++ ..|| .|.|+.|.|.+.
T Consensus 195 av~~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~~ 230 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTVG 230 (1006)
T ss_pred HHHHHHHHCCCcEEECChhheeCc-cceeCCCEeeeC
Confidence 345666778884 32 5686 999999999753
No 122
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=25.77 E-value=66 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCCC
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
..|...+..|+.|.||.+.-++|++++
T Consensus 155 s~g~wqsy~V~~G~TLaQlFRdn~Lpi 181 (242)
T COG3061 155 SSGNWQSYTVPQGKTLAQLFRDNNLPI 181 (242)
T ss_pred CcccceeEEecCCccHHHHHhccCCCh
Confidence 346678999999999999999999976
No 123
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=24.88 E-value=1.5e+02 Score=19.31 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=19.6
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCCCc
Q 031881 86 DGEEKNIKVPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 86 dG~~~tv~v~~G~sLLdaa~~~gI~l~ 112 (151)
+| ...+.+++.||.+.+.+.+++.+
T Consensus 6 NG--~~~~~~~~~tl~~ll~~l~~~~~ 30 (65)
T PRK05863 6 NE--EQVEVDEQTTVAALLDSLGFPEK 30 (65)
T ss_pred CC--EEEEcCCCCcHHHHHHHcCCCCC
Confidence 46 45666789999999999988654
No 124
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.87 E-value=1e+02 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAA 104 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa 104 (151)
++|+|.+.+|+..++++.+.+|+.++=
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK 27 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELK 27 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHH
Confidence 378888899999999999999988753
No 125
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=23.68 E-value=76 Score=31.49 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=22.3
Q ss_pred hHHHHHHHCCCCC------cCCCCCCceecccEEEE
Q 031881 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIV 128 (151)
Q Consensus 99 sLLdaa~~~gI~l------~~aCgG~g~CgTChV~v 128 (151)
.+.+.+.+.|++. ..+|| -|.|+.|.|.+
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~ 895 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVDA-TGMCGACMVPV 895 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccCC-CeeeCeeeeee
Confidence 4556677888864 36796 99999999975
No 126
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=23.63 E-value=41 Score=26.80 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.7
Q ss_pred CCCCCCceecccEEEE
Q 031881 113 GACEGSLACSTCHVIV 128 (151)
Q Consensus 113 ~aCgG~g~CgTChV~v 128 (151)
-.|| -|.|+.|.+..
T Consensus 214 m~Cg-~G~C~~C~~~~ 228 (243)
T cd06192 214 MCCG-IGICGACTIET 228 (243)
T ss_pred ccCc-cccccceEEEe
Confidence 5676 99999999975
No 127
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=23.16 E-value=1.3e+02 Score=19.79 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=18.4
Q ss_pred EEEcC-CCCEEEEEeCCCchHHHH
Q 031881 81 TFVDK-DGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 81 tfi~~-dG~~~tv~v~~G~sLLda 103 (151)
+|... .|+...+++.+.+|+-+.
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~l 25 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENF 25 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHH
Confidence 45556 788899999999988764
No 128
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=22.70 E-value=1.7e+02 Score=18.93 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
++|++.+..|. .++++.+.+|+-+.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~l 25 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDF 25 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHH
Confidence 36788888886 58999999988773
No 129
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=22.63 E-value=38 Score=22.29 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=15.1
Q ss_pred chHHHHHHHCCC----CCcCCCCCCceecccE
Q 031881 98 MSMLEAAHENDI----ELEGACEGSLACSTCH 125 (151)
Q Consensus 98 ~sLLdaa~~~gI----~l~~aCgG~g~CgTCh 125 (151)
+.+|+...+.|. +.+..| .+.|+.|.
T Consensus 32 e~mL~~l~~kG~I~~~~~~~~~--~~~C~~C~ 61 (69)
T PF09012_consen 32 EAMLEQLIRKGYIRKVDMSSCC--GGSCSSCG 61 (69)
T ss_dssp HHHHHHHHCCTSCEEEEEE--S--SSSSSS-S
T ss_pred HHHHHHHHHCCcEEEecCCCCC--CCCCCCCC
Confidence 357777777774 334555 47788886
No 130
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=21.94 E-value=20 Score=26.32 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.6
Q ss_pred hHHHHHHHCCCCCcCCCCCCceecccEEEEEc
Q 031881 99 SMLEAAHENDIELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 99 sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~ 130 (151)
|+-|.+..+- ...+|..||-+++.
T Consensus 58 T~Re~~~~h~--------~~~~Ca~CH~~iDP 81 (101)
T PF07627_consen 58 TNRERLEQHT--------ENPACASCHRKIDP 81 (101)
T ss_pred CHHHHHHhhc--------CCCcHHHHhhhhCc
Confidence 8888877662 36788999998865
No 131
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=21.75 E-value=2.6e+02 Score=18.67 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHH
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAA 104 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa 104 (151)
+..+|.|.-+||...+......++|-++-
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~ 31 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVY 31 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHH
Confidence 45567777799999999999999876653
No 132
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.70 E-value=56 Score=21.94 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=11.3
Q ss_pred CCCChhhhhhhhhhcc
Q 031881 134 PYMCRDNVLSNIFKNM 149 (151)
Q Consensus 134 ~~~~~~E~L~~~~~~~ 149 (151)
.+...+++|+.||+|+
T Consensus 57 G~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 57 GEVVTEDILDNIFSNF 72 (73)
T ss_dssp TSS--HHHHHHHHCTS
T ss_pred CCCChHHHHHHHHHhh
Confidence 3456789999999885
No 133
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=21.55 E-value=1.5e+02 Score=18.83 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEEeCCCchHHHHHHHCCCC
Q 031881 90 KNIKVPVGMSMLEAAHENDIE 110 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~ 110 (151)
.++++++|.||.+++...+++
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 8 QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEECCCCCcHHHHHHhhCCC
Confidence 577889999999999988875
No 134
>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....
Probab=21.52 E-value=21 Score=27.85 Aligned_cols=11 Identities=36% Similarity=1.123 Sum_probs=6.7
Q ss_pred CCceecccEEE
Q 031881 117 GSLACSTCHVI 127 (151)
Q Consensus 117 G~g~CgTChV~ 127 (151)
|.-+|.+||..
T Consensus 21 ~~~SCasCH~~ 31 (159)
T PF03150_consen 21 GTVSCASCHDP 31 (159)
T ss_dssp SS--HHHHS-T
T ss_pred cCcCchhhCCC
Confidence 58899999974
No 135
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.41 E-value=34 Score=23.97 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCC-CcCCCCCCceecccEEE---EEc-CCCCCCChhhhhhhhhh
Q 031881 108 DIE-LEGACEGSLACSTCHVI---VMV-HYWPYMCRDNVLSNIFK 147 (151)
Q Consensus 108 gI~-l~~aCgG~g~CgTChV~---v~~-~~l~~~~~~E~L~~~~~ 147 (151)
++| +++.|- -.||+|..- +.. +....-+.+|+++||+-
T Consensus 28 ~lDvlEYgCL--t~Cg~Ca~~lfALVnGevV~Get~eeLv~NIY~ 70 (78)
T COG4844 28 NLDVLEYGCL--THCGICAASLFALVNGEVVEGETPEELVENIYT 70 (78)
T ss_pred CccchhhhhH--hhhhhHHHhHHHHhcCceecCCCHHHHHHHHHH
Confidence 455 589997 688888753 223 44556688999999873
No 136
>PF05369 MtmB: Monomethylamine methyltransferase MtmB; InterPro: IPR008031 Monomethylamine methyltransferase of the archaebacterium Methanosarcina barkeri contains a novel amino acid, pyrrolysine, encoded by the termination codon UAG []. The structure of the enzyme reveals a homohexamer comprised of individual subunits with a TIM barrel fold. MtmB initiates the metabolism of monomethylamine by catalysing the transfer of the methyl group from monomethylamine to the corrinoid cofactor of MtmC.; GO: 0008168 methyltransferase activity
Probab=21.36 E-value=35 Score=31.35 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEc-CCCCCCChhhhhhhhh
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMV-HYWPYMCRDNVLSNIF 146 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~-~~l~~~~~~E~L~~~~ 146 (151)
+++.|.| |+ + -+|.++.|+|.+.++|++|--.|| ..| ++ +-.-+.+++|+|+.|.
T Consensus 40 ~kY~I~~---d~---e-fvP~D~dm~d~lf~Ag~ell~e~G--iyc-------~DT~RvI~~tedEIl~ai~ 95 (457)
T PF05369_consen 40 KKYGIKF---DG---E-FVPTDDDMADRLFQAGIELLVECG--IYC-------TDTGRVIKYTEDEILDAIN 95 (457)
T ss_pred HHhCCcc---CC---C-cCCCcHHHHHHHHHHHHHHHHhcC--eeE-------ccCCceeecCHHHHHHHHh
Confidence 4555666 24 2 678899999999999999999998 444 33 3334668888887764
No 137
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=21.34 E-value=1.4e+02 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=18.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+|++. -.|+.+++++.+.+|+.+.
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHH
Confidence 45555 3677889999999998764
No 138
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=20.52 E-value=40 Score=25.69 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSML 101 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLL 101 (151)
.......|++.+.||+..+-.+++|-.|+
T Consensus 19 ~ekgg~~vtI~~~dG~~v~~~IP~GpeLi 47 (118)
T PF01333_consen 19 KEKGGYEVTIETSDGETVVETIPAGPELI 47 (118)
T ss_dssp ETTSEEEEEEETTTSEEEEEEEESSS-BS
T ss_pred cCCCCEEEEEECCCCCEEEEecCCCCeEE
Confidence 33567789999999988888899988776
Done!