Query 031881
Match_columns 151
No_of_seqs 179 out of 1171
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bt6_A Adrenodoxin 1; rutheniu 99.7 3E-18 1E-22 123.3 7.3 71 73-143 2-79 (108)
2 3hui_A Ferredoxin; cytochrome 99.7 4.4E-18 1.5E-22 127.4 7.9 73 71-143 15-93 (126)
3 2y5c_A Adrenodoxin-like protei 99.7 1.3E-17 4.3E-22 120.4 8.0 69 75-143 3-76 (109)
4 3lxf_A Ferredoxin; iron, iron- 99.7 5.3E-17 1.8E-21 117.0 7.9 67 78-144 1-73 (104)
5 3n9z_C Adrenodoxin; cytochrome 99.7 2.7E-18 9.4E-23 128.0 0.7 70 74-143 2-78 (123)
6 3ah7_A [2Fe-2S]ferredoxin; [2F 99.7 1.4E-16 4.6E-21 115.4 7.2 64 77-140 1-69 (113)
7 1xlq_A Putidaredoxin, PDX; [2F 99.7 2.5E-16 8.7E-21 112.7 8.0 67 78-144 1-73 (106)
8 1uwm_A Ferredoxin VI, FDVI; el 99.6 3.5E-16 1.2E-20 112.0 7.7 67 78-144 1-73 (106)
9 2wlb_A ETP1-FD, electron trans 99.6 6.2E-16 2.1E-20 110.1 7.8 69 76-144 2-75 (103)
10 1b9r_A Protein (terpredoxin); 99.6 4.2E-16 1.4E-20 111.3 5.0 66 78-143 1-72 (105)
11 1l5p_A Ferredoxin; [2Fe-2S] cl 99.6 4.6E-15 1.6E-19 104.3 6.9 64 79-143 2-68 (93)
12 1i7h_A Ferredoxin; 2Fe-2S,elec 99.6 7.1E-15 2.4E-19 106.2 7.2 62 77-138 1-67 (111)
13 1jq4_A Methane monooxygenase c 99.5 2.7E-14 9.2E-19 100.8 5.8 58 76-134 3-60 (98)
14 1frr_A Ferredoxin I; electron 99.4 2.1E-13 7.3E-18 95.2 7.4 54 77-132 1-54 (95)
15 1czp_A Ferredoxin I; [2Fe-2S] 99.4 1E-12 3.6E-17 92.7 7.7 55 78-133 3-58 (98)
16 1frd_A Heterocyst [2Fe-2S] fer 99.4 1.3E-12 4.3E-17 92.0 7.7 54 78-132 3-57 (98)
17 1awd_A Ferredoxin; electron tr 99.4 9.6E-13 3.3E-17 92.3 6.8 53 79-133 2-54 (94)
18 1a70_A Ferredoxin; iron-sulfur 99.3 1.8E-12 6.2E-17 91.4 7.1 54 78-133 3-56 (97)
19 1iue_A Ferredoxin; electron tr 99.3 2.7E-12 9.1E-17 90.7 7.0 54 78-133 3-56 (98)
20 1krh_A Benzoate 1,2-dioxygenas 99.3 3.1E-12 1.1E-16 105.8 8.1 57 76-133 2-58 (338)
21 1wri_A Ferredoxin II, ferredox 99.3 3.1E-12 1E-16 89.6 6.5 54 77-133 1-54 (93)
22 3zyy_X Iron-sulfur cluster bin 99.2 3.5E-11 1.2E-15 110.2 7.1 55 76-133 2-56 (631)
23 1doi_A 2Fe-2S ferredoxin; halo 99.2 9.9E-12 3.4E-16 92.8 2.7 57 74-133 24-80 (128)
24 2pia_A Phthalate dioxygenase r 99.1 1E-10 3.5E-15 96.7 5.9 55 75-133 235-289 (321)
25 1t3q_A Quinoline 2-oxidoreduct 98.5 2E-07 6.7E-12 72.2 6.9 52 76-129 8-61 (168)
26 3i9v_3 NADH-quinone oxidoreduc 98.2 1.5E-06 5E-11 80.5 5.8 48 77-129 1-53 (783)
27 3hrd_D Nicotinate dehydrogenas 98.0 8.7E-06 3E-10 63.1 6.5 51 78-130 4-56 (160)
28 1n62_A Carbon monoxide dehydro 97.9 1.9E-05 6.4E-10 61.4 6.6 50 79-130 5-56 (166)
29 1ffv_A CUTS, iron-sulfur prote 97.9 2.3E-05 7.9E-10 60.7 6.6 50 79-130 5-56 (163)
30 3c8y_A Iron hydrogenase 1; dit 97.9 1.8E-05 6E-10 71.1 6.5 45 85-131 6-56 (574)
31 1rm6_C 4-hydroxybenzoyl-COA re 97.9 2.3E-05 7.9E-10 60.3 6.3 50 79-130 4-55 (161)
32 1kf6_B Fumarate reductase iron 97.5 0.00011 3.8E-09 58.4 5.1 40 89-129 25-70 (243)
33 2bs2_B Quinol-fumarate reducta 97.4 0.00014 4.9E-09 57.8 4.9 40 89-129 25-70 (241)
34 2wdq_B Succinate dehydrogenase 97.3 0.00025 8.7E-09 56.1 4.9 41 89-130 22-69 (238)
35 2h88_B Succinate dehydrogenase 97.1 0.00065 2.2E-08 54.6 5.3 41 89-130 32-79 (252)
36 1vlb_A Aldehyde oxidoreductase 96.9 0.0014 4.9E-08 61.9 6.6 52 77-130 1-54 (907)
37 3nvw_A Xanthine dehydrogenase/ 96.8 0.0012 3.9E-08 51.4 4.1 44 85-129 9-55 (164)
38 2w3s_A Xanthine dehydrogenase; 96.7 0.002 6.8E-08 56.8 5.4 48 79-128 2-51 (462)
39 1dgj_A Aldehyde oxidoreductase 96.7 0.0017 5.9E-08 61.4 5.3 51 78-130 2-54 (907)
40 3vr8_B Iron-sulfur subunit of 96.6 0.0034 1.1E-07 52.2 6.4 41 89-130 56-103 (282)
41 1y56_A Hypothetical protein PH 95.1 0.019 6.3E-07 49.6 4.4 48 80-130 16-68 (493)
42 3unc_A Xanthine dehydrogenase/ 92.8 0.097 3.3E-06 51.5 4.9 48 80-129 6-56 (1332)
43 2gag_A Heterotetrameric sarcos 91.1 0.24 8.1E-06 46.7 5.2 50 76-129 19-79 (965)
44 3u7z_A Putative metal binding 86.9 1.1 3.6E-05 32.0 4.9 35 73-108 4-40 (101)
45 2l05_A Serine/threonine-protei 86.8 0.9 3.1E-05 32.3 4.4 45 73-129 15-63 (95)
46 3plu_A Ubiquitin-like modifier 84.7 1.2 4.2E-05 31.3 4.3 40 73-112 17-60 (93)
47 3ny5_A Serine/threonine-protei 83.7 1.2 4.2E-05 31.7 4.0 49 69-129 7-59 (96)
48 3zyv_A AOH1; oxidoreductase, m 82.8 1.4 4.7E-05 43.4 5.2 49 80-130 10-61 (1335)
49 1wxm_A A-RAF proto-oncogene se 82.5 1.2 4.1E-05 31.1 3.4 33 72-106 4-36 (86)
50 2al3_A TUG long isoform; TUG U 82.3 0.87 3E-05 32.0 2.7 32 79-110 11-46 (90)
51 3kdv_A DDRB, DNA damage respon 81.9 1.5 5E-05 34.2 4.1 36 73-108 3-38 (184)
52 2gow_A HCG-1 protein, ubiquiti 80.5 3.3 0.00011 30.1 5.5 31 73-103 13-43 (125)
53 1uh6_A Ubiquitin-like 5; beta- 80.2 2.2 7.6E-05 30.1 4.3 40 73-112 24-67 (100)
54 1rrb_A RAF-1 RBD, RAF proto-on 78.9 1.5 5E-05 31.8 3.0 48 70-129 13-64 (107)
55 1v2y_A 3300001G02RIK protein; 78.7 4.1 0.00014 28.8 5.3 30 74-103 4-33 (105)
56 3v6c_B Ubiquitin; structural g 76.0 6.2 0.00021 26.0 5.4 43 70-112 10-56 (91)
57 1wwt_A Threonyl-tRNA synthetas 74.0 5.6 0.00019 26.2 4.8 39 73-115 7-46 (88)
58 3dbh_I NEDD8; cell cycle, acti 73.9 8 0.00027 24.8 5.4 39 73-111 8-50 (88)
59 4hcn_B Polyubiquitin, ubiquiti 72.4 4.5 0.00015 27.3 4.0 42 70-111 15-60 (98)
60 2kan_A Uncharacterized protein 72.1 9.5 0.00032 25.7 5.6 42 68-110 6-51 (94)
61 1c1y_B Proto-onkogene serine/t 71.4 4.3 0.00015 27.7 3.6 29 77-107 3-31 (77)
62 1wgh_A Ubiquitin-like 3, HCG-1 68.8 8 0.00027 27.7 4.9 31 73-103 12-42 (116)
63 1wh3_A 59 kDa 2'-5'-oligoadeny 68.8 9 0.00031 24.6 4.8 38 74-111 4-45 (87)
64 2dzi_A Ubiquitin-like protein 68.0 12 0.00041 23.5 5.2 37 75-111 5-45 (81)
65 4dwf_A HLA-B-associated transc 66.3 9.8 0.00033 24.7 4.6 28 76-103 4-31 (90)
66 3mtn_B UBA80, ubcep1, ubiquiti 64.2 11 0.00039 23.7 4.5 36 76-111 2-41 (85)
67 2kjr_A CG11242; UBL, ubiquitin 61.6 19 0.00066 24.5 5.5 37 67-103 5-43 (95)
68 1wyw_B Ubiquitin-like protein 61.2 10 0.00034 25.5 4.0 31 73-103 17-47 (97)
69 3phx_B Ubiquitin-like protein 60.8 15 0.00052 23.1 4.6 36 76-111 3-42 (79)
70 1wgd_A Homocysteine-responsive 60.6 12 0.00041 24.7 4.2 31 73-103 3-35 (93)
71 2l7r_A Ubiquitin-like protein 60.5 8.9 0.0003 25.6 3.6 32 70-103 12-43 (93)
72 1yqb_A Ubiquilin 3; structural 60.4 14 0.00047 25.1 4.6 34 69-103 14-47 (100)
73 3a4r_A Nfatc2-interacting prot 60.1 26 0.00088 22.8 5.8 33 71-103 1-34 (79)
74 3u30_A Ubiquitin, linear DI-ub 59.5 10 0.00036 27.8 4.1 42 70-111 13-58 (172)
75 4eew_A Large proline-rich prot 58.8 15 0.00051 23.7 4.4 38 74-111 14-55 (88)
76 1wy8_A NP95-like ring finger p 58.6 23 0.0008 22.7 5.4 37 75-111 5-47 (89)
77 2uyz_B Small ubiquitin-related 58.0 17 0.00058 22.9 4.5 36 76-111 2-41 (79)
78 1wia_A Hypothetical ubiquitin- 57.5 19 0.00064 23.7 4.8 32 75-106 5-36 (95)
79 1ttn_A DC-UBP, dendritic cell- 55.6 16 0.00055 24.8 4.3 33 71-103 17-49 (106)
80 2hj8_A Interferon-induced 17 k 55.0 18 0.00062 23.6 4.3 36 76-111 3-42 (88)
81 2lxa_A Ubiquitin-like protein 54.7 7.1 0.00024 26.3 2.3 27 77-103 1-29 (87)
82 1se9_A Ubiquitin family; ubiqu 54.6 23 0.0008 25.8 5.2 35 69-103 8-43 (126)
83 2wyq_A HHR23A, UV excision rep 53.6 23 0.00078 22.4 4.6 28 76-103 4-31 (85)
84 1wgr_A Growth factor receptor- 53.3 38 0.0013 23.8 6.0 48 76-129 8-55 (100)
85 1e0g_A Membrane-bound lytic mu 52.5 6.7 0.00023 22.4 1.6 23 90-112 3-25 (48)
86 3n3k_B Ubiquitin; hydrolase, p 52.2 12 0.00041 23.7 3.0 36 77-112 3-42 (85)
87 3m62_B UV excision repair prot 50.6 12 0.0004 25.7 2.9 27 77-103 1-27 (106)
88 2hj1_A Hypothetical protein; s 48.0 10 0.00035 26.5 2.2 35 76-110 13-48 (97)
89 4a20_A Ubiquitin-like protein 47.7 24 0.0008 24.2 4.1 31 73-103 15-47 (98)
90 3hvz_A Uncharacterized protein 47.4 20 0.00067 23.9 3.5 34 80-115 8-41 (78)
91 2kk8_A Uncharacterized protein 46.6 31 0.001 22.5 4.4 27 77-103 10-36 (84)
92 2l32_A Small archaeal modifier 46.0 44 0.0015 21.7 5.1 25 88-112 11-35 (74)
93 1ndd_A NEDD8, protein (ubiquit 45.5 28 0.00097 21.1 3.9 33 79-111 2-38 (76)
94 1wx8_A Riken cDNA 4931431F19; 45.3 40 0.0014 22.1 4.9 37 74-111 14-54 (96)
95 2io1_B Small ubiquitin-related 44.9 30 0.001 23.4 4.3 38 74-111 4-45 (94)
96 2kmm_A Guanosine-3',5'-BIS(dip 44.4 21 0.00072 22.2 3.2 25 85-111 8-32 (73)
97 3vdz_A Ubiquitin-40S ribosomal 43.2 31 0.0011 23.7 4.2 37 75-111 33-73 (111)
98 1wgg_A Ubiquitin carboxyl-term 42.8 34 0.0012 22.9 4.3 38 73-111 3-45 (96)
99 1v86_A DNA segment, CHR 7, way 42.7 39 0.0013 22.5 4.5 40 71-111 11-54 (95)
100 3a9j_A Ubiquitin; protein comp 42.3 33 0.0011 20.8 3.9 32 79-110 2-37 (76)
101 1ep3_B Dihydroorotate dehydrog 42.0 12 0.0004 29.0 2.0 29 99-129 205-239 (262)
102 4fbj_B NEDD8; effector-HOST ta 40.3 35 0.0012 22.2 3.9 34 79-112 2-39 (88)
103 1wxv_A BAG-family molecular ch 40.0 64 0.0022 20.8 5.3 36 74-110 4-48 (92)
104 2k8h_A Small ubiquitin protein 39.3 69 0.0023 22.5 5.6 33 71-103 20-52 (110)
105 1wz0_A Ubiquitin-like protein 39.1 81 0.0028 21.7 5.9 39 73-111 20-62 (104)
106 1v5o_A 1700011N24RIK protein; 38.7 70 0.0024 21.4 5.4 37 75-111 5-49 (102)
107 3k9o_B Ubiquitin, UBB+1; E2-25 38.2 39 0.0013 21.9 3.9 34 78-111 2-39 (96)
108 2io0_B Small ubiquitin-related 37.4 47 0.0016 22.4 4.3 37 75-111 3-43 (91)
109 2d07_B Ubiquitin-like protein 36.8 65 0.0022 21.5 4.9 31 73-103 13-43 (93)
110 2ojr_A Ubiquitin; lanthide-bin 36.8 57 0.0019 22.2 4.7 37 75-111 33-73 (111)
111 2djp_A Hypothetical protein SB 36.7 14 0.00048 23.6 1.4 23 90-112 16-38 (77)
112 1wx7_A Ubiquilin 3; ubiquitin- 35.7 53 0.0018 22.1 4.4 30 73-103 13-42 (106)
113 2klc_A Ubiquilin-1; ubiquitin- 35.5 60 0.0021 21.8 4.6 37 74-111 22-62 (101)
114 1tyg_B YJBS; alpha beta barrel 35.2 31 0.0011 23.3 3.1 33 73-110 16-49 (87)
115 1xn7_A Hypothetical protein YH 34.6 15 0.00053 24.3 1.4 26 99-125 35-65 (78)
116 2kdb_A Homocysteine-responsive 34.2 50 0.0017 22.5 4.1 30 74-103 20-51 (99)
117 1uel_A HHR23B, UV excision rep 33.8 51 0.0017 21.7 3.9 25 79-103 2-26 (95)
118 2dzj_A Synaptic glycoprotein S 33.4 68 0.0023 21.1 4.5 36 75-110 8-51 (88)
119 1v5t_A 8430435I17RIK protein; 32.4 32 0.0011 22.5 2.7 36 75-111 5-45 (90)
120 1j8c_A Ubiquitin-like protein 32.2 91 0.0031 21.9 5.3 29 74-103 29-57 (125)
121 2faz_A Ubiquitin-like containi 31.8 63 0.0022 19.9 4.0 35 77-111 2-42 (78)
122 2bwf_A Ubiquitin-like protein 31.6 59 0.002 19.8 3.8 32 78-110 5-40 (77)
123 3rt3_B Ubiquitin-like protein 31.3 80 0.0027 22.4 4.9 36 76-111 80-119 (159)
124 1sif_A Ubiquitin; hydrophobic 31.1 59 0.002 21.0 3.9 35 77-111 9-47 (88)
125 2dzk_A UBX domain-containing p 30.8 1.2E+02 0.0041 20.8 5.7 35 69-103 5-39 (109)
126 4a1k_A Putative L, D-transpept 29.7 39 0.0013 25.1 3.1 21 90-110 3-23 (165)
127 2kj6_A Tubulin folding cofacto 28.9 1.3E+02 0.0045 20.2 5.5 37 67-103 4-42 (97)
128 1yx5_B Ubiquitin; proteasome, 28.8 67 0.0023 21.0 3.9 32 79-110 2-37 (98)
129 3rt3_B Ubiquitin-like protein 27.5 65 0.0022 22.9 3.9 34 78-111 3-40 (159)
130 1tke_A Threonyl-tRNA synthetas 27.2 38 0.0013 26.0 2.7 28 77-108 1-28 (224)
131 1wf9_A NPL4 family protein; be 26.0 1.3E+02 0.0044 20.3 5.0 33 78-111 8-45 (107)
132 2kdi_A Ubiquitin, vacuolar pro 25.8 84 0.0029 21.6 4.1 28 76-103 8-35 (114)
133 1wm3_A Ubiquitin-like protein 25.8 1.1E+02 0.0039 19.0 4.4 34 78-111 2-39 (72)
134 2k02_A Ferrous iron transport 24.8 31 0.0011 23.5 1.6 25 99-124 35-64 (87)
135 1oqy_A HHR23A, UV excision rep 24.5 38 0.0013 28.7 2.4 31 73-103 3-33 (368)
136 3b08_A Polyubiquitin-C, ubiqui 23.8 1.4E+02 0.0047 20.5 4.9 36 76-111 75-114 (152)
137 3b08_A Polyubiquitin-C, ubiqui 23.2 90 0.0031 21.5 3.9 32 79-110 2-37 (152)
138 2jxx_A Nfatc2-interacting prot 22.3 1.8E+02 0.0063 19.8 5.2 32 73-104 21-53 (97)
139 2eke_C Ubiquitin-like protein 22.2 1.6E+02 0.0056 20.3 5.0 37 73-110 27-67 (106)
140 2fwt_A DHC, diheme cytochrome 22.0 12 0.00041 27.4 -1.1 16 119-134 11-26 (125)
141 3q3f_A Ribonuclease/ubiquitin 21.8 1.2E+02 0.004 23.2 4.5 36 76-111 104-143 (189)
142 2pmv_A Gastric intrinsic facto 21.4 65 0.0022 27.8 3.3 20 88-107 313-332 (399)
143 2l9y_A CVNH-LYSM lectin; carbo 20.7 67 0.0023 23.9 2.9 23 89-111 62-84 (167)
144 1ryj_A Unknown; beta/alpha pro 20.5 1.6E+02 0.0056 18.3 5.2 32 78-110 5-36 (70)
145 2fw5_A DHC, diheme cytochrome 20.1 14 0.00047 27.6 -1.1 16 119-134 22-37 (139)
No 1
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.74 E-value=3e-18 Score=123.35 Aligned_cols=71 Identities=38% Similarity=0.746 Sum_probs=60.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCc--CCCCCCceecccEEEEEcC---CCCCCChhh--hhh
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE--GACEGSLACSTCHVIVMVH---YWPYMCRDN--VLS 143 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~--~aCgG~g~CgTChV~v~~~---~l~~~~~~E--~L~ 143 (151)
++.+|++|+|++++|..+++++++|+|||++|+++||++| +.|+|.|+||||||+|.++ .+++++++| +|+
T Consensus 2 ~~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~ 79 (108)
T 2bt6_A 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLD 79 (108)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHT
T ss_pred CCCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHh
Confidence 4567999999989998889999999999999999999999 9999999999999999875 566777544 555
No 2
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.74 E-value=4.4e-18 Score=127.39 Aligned_cols=73 Identities=33% Similarity=0.561 Sum_probs=65.5
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEcCC---CCCCChhh--hhh
Q 031881 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMVHY---WPYMCRDN--VLS 143 (151)
Q Consensus 71 ~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~~~---l~~~~~~E--~L~ 143 (151)
-|.+.+|++|+|++++|+.+++++++|+||||+|+++||+ +++.|+|.|.||||+|+|.++. +++++++| +|+
T Consensus 15 ~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~ 93 (126)
T 3hui_A 15 VPRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLD 93 (126)
T ss_dssp CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHT
T ss_pred cCCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcC
Confidence 3577899999999999999999999999999999999999 9999999999999999999875 66777644 565
No 3
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=120.37 Aligned_cols=69 Identities=42% Similarity=0.709 Sum_probs=60.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcC---CCCCCChhh--hhh
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVH---YWPYMCRDN--VLS 143 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~---~l~~~~~~E--~L~ 143 (151)
++|++|+|++++|..+++++++|+|||++|+++||++|+.|+|.|.||||||+|.++ .+++++++| .|+
T Consensus 3 ~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~ 76 (109)
T 2y5c_A 3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLD 76 (109)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHH
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHh
Confidence 468999999899988899999999999999999999999999999999999999875 466777544 554
No 4
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.69 E-value=5.3e-17 Score=116.98 Aligned_cols=67 Identities=30% Similarity=0.659 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEcCC---CCCCChhh--hhhh
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMVHY---WPYMCRDN--VLSN 144 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~~~---l~~~~~~E--~L~~ 144 (151)
.+|||+++||+.+++++++|+|||++++++||+ +++.|+|.|.||||||+|.++. +++++++| .|+.
T Consensus 1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~ 73 (104)
T 3lxf_A 1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDS 73 (104)
T ss_dssp CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhcc
Confidence 379999999999999999999999999999999 9999999999999999999864 56676644 5654
No 5
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.68 E-value=2.7e-18 Score=127.96 Aligned_cols=70 Identities=41% Similarity=0.770 Sum_probs=17.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCc--CCCCCCceecccEEEEEcC---CCCCCChhh--hhh
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE--GACEGSLACSTCHVIVMVH---YWPYMCRDN--VLS 143 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~--~aCgG~g~CgTChV~v~~~---~l~~~~~~E--~L~ 143 (151)
.++|++|+|++++|..+++++++|+|||++|+++||+++ ++|+|.|+||||||+|.++ .+++++++| +|+
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~ 78 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLD 78 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhc
Confidence 468999999999998899999999999999999999999 9999999999999999863 466776544 565
No 6
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.66 E-value=1.4e-16 Score=115.44 Aligned_cols=64 Identities=38% Similarity=0.592 Sum_probs=56.2
Q ss_pred ceEEEEEcCCC---CEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCC--CCCCChhh
Q 031881 77 MINVTFVDKDG---EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHY--WPYMCRDN 140 (151)
Q Consensus 77 ~v~Vtfi~~dG---~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~--l~~~~~~E 140 (151)
|++|||++.+| ..+++++++|+||||+|+++||++|+.|+|.|.||||+|+|.++. +++++++|
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e 69 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELE 69 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHH
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHH
Confidence 67999998776 668999999999999999999999999999999999999999764 55666543
No 7
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.66 E-value=2.5e-16 Score=112.67 Aligned_cols=67 Identities=34% Similarity=0.651 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEcCC---CCCCChhh--hhhh
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMVHY---WPYMCRDN--VLSN 144 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~~~---l~~~~~~E--~L~~ 144 (151)
++|+|++++|+.+++++++|+||||+|+++||+ +|+.|+|.|.||||||+|.++. +++++++| .|+.
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~ 73 (106)
T 1xlq_A 1 SKVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLES 73 (106)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhc
Confidence 378998899988999999999999999999999 9999998999999999999874 55666544 5543
No 8
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.64 E-value=3.5e-16 Score=111.97 Aligned_cols=67 Identities=25% Similarity=0.599 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEcC---CCCCCChhh--hhhh
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMVH---YWPYMCRDN--VLSN 144 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~~---~l~~~~~~E--~L~~ 144 (151)
++|+|++++|..+++++++|+||||+|+++||+ +|+.|+|.|.||||||+|.++ .+++++++| .|+.
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~ 73 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDF 73 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcC
Confidence 478998899988999999999999999999999 999999899999999999975 466777544 5554
No 9
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.63 E-value=6.2e-16 Score=110.13 Aligned_cols=69 Identities=48% Similarity=0.673 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcC---CCCCCChhh--hhhh
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVH---YWPYMCRDN--VLSN 144 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~---~l~~~~~~E--~L~~ 144 (151)
++++|+|.+++|+.+++++++|+||||+|+++||++++.|+|.|.||||+|+|.++ .+++++++| .|+.
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~ 75 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDL 75 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTT
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhc
Confidence 46899999889988999999999999999999999999999999999999999875 356666644 5554
No 10
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.61 E-value=4.2e-16 Score=111.35 Aligned_cols=66 Identities=24% Similarity=0.483 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEcCC---CCCCCh--hhhhh
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMVHY---WPYMCR--DNVLS 143 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~~~---l~~~~~--~E~L~ 143 (151)
++|+|++++|+.+++++++|+|||++|+++||+ +|+.|+|.|.||||||+|.++. ++++++ .+.|+
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~ 72 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQ 72 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhh
Confidence 478997789988999999999999999999999 9999999999999999999874 345554 33555
No 11
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.57 E-value=4.6e-15 Score=104.28 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=56.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEEEcCCCCCCChhh--hhh
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMVHYWPYMCRDN--VLS 143 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v~~~~l~~~~~~E--~L~ 143 (151)
+|+|. ++|+.+++++++|+||||+++++|++ +|+.|+|.|.|++|+|+|.++.+++++++| .|+
T Consensus 2 ~v~i~-~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~ 68 (93)
T 1l5p_A 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE 68 (93)
T ss_dssp EEEEE-ETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT
T ss_pred eEEEE-eCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc
Confidence 46644 78888899999999999999999999 999999999999999999999888887644 555
No 12
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.55 E-value=7.1e-15 Score=106.18 Aligned_cols=62 Identities=34% Similarity=0.588 Sum_probs=53.1
Q ss_pred ceEEEEEcCCC---CEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCC--CCCCCh
Q 031881 77 MINVTFVDKDG---EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHY--WPYMCR 138 (151)
Q Consensus 77 ~v~Vtfi~~dG---~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~--l~~~~~ 138 (151)
|++|+|+..+| ..+++++++|+||||+|+++|+++|+.|+|.|.||+|+|+|.++. ++++++
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~ 67 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSE 67 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCH
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCH
Confidence 67899987655 568999999999999999999999999988999999999999764 445554
No 13
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.49 E-value=2.7e-14 Score=100.77 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYWP 134 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l~ 134 (151)
.|++|+|.++||..+++++++|+||||+|+++|+++|+.| |.|.||+|+|+|.++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v~~G~~~ 60 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDYD 60 (98)
T ss_dssp CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCEEECCCC
T ss_pred CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEEEcCccc
Confidence 4789999988888899999999999999999999999999 599999999999876544
No 14
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.44 E-value=2.1e-13 Score=95.16 Aligned_cols=54 Identities=30% Similarity=0.477 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCC
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHY 132 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~ 132 (151)
+++|+|..++| .+++++++|+||||+|+++||++|+.|+ .|.||+|+|+|.++.
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~ 54 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKVVSGS 54 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESC
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEEEeCC
Confidence 35788876777 6899999999999999999999999998 999999999998764
No 15
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.38 E-value=1e-12 Score=92.69 Aligned_cols=55 Identities=29% Similarity=0.460 Sum_probs=49.2
Q ss_pred eEEEEEcCCCC-EEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 78 INVTFVDKDGE-EKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 78 v~Vtfi~~dG~-~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
++|+|+.++|. .+++++++|+||||+++++|+++|+.|+ .|.||+|+|+|.++..
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~ 58 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKLVSGTV 58 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEEccCCc
Confidence 68999877664 6899999999999999999999999998 9999999999987653
No 16
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.37 E-value=1.3e-12 Score=91.97 Aligned_cols=54 Identities=30% Similarity=0.468 Sum_probs=47.9
Q ss_pred eEEEEEcCCC-CEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCC
Q 031881 78 INVTFVDKDG-EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHY 132 (151)
Q Consensus 78 v~Vtfi~~dG-~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~ 132 (151)
++|+|..+++ ..+++++++|+||||+|+++||++|+.|+ .|.||+|+|+|.++.
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~ 57 (98)
T 1frd_A 3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKVVEGE 57 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESC
T ss_pred eEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEEEeCC
Confidence 6789986554 25899999999999999999999999998 999999999998764
No 17
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.37 E-value=9.6e-13 Score=92.26 Aligned_cols=53 Identities=32% Similarity=0.481 Sum_probs=47.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
+|+|+.++| .+++++++|+||||+|+++|+++|+.|+ .|.||+|+|+|.++..
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~ 54 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKVESGEV 54 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEEEeCCc
Confidence 688876666 6899999999999999999999999998 9999999999987643
No 18
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.35 E-value=1.8e-12 Score=91.42 Aligned_cols=54 Identities=28% Similarity=0.479 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
++|+|..++| .+++++++|+||||+|+++|+++|+.|+ .|.||+|+|+|.++..
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~ 56 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSL 56 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCE
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEEccCCc
Confidence 5788875666 6899999999999999999999999998 9999999999987643
No 19
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.33 E-value=2.7e-12 Score=90.74 Aligned_cols=54 Identities=30% Similarity=0.491 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
++|+|..++| .+++++++|+||||+++++|+++|+.|+ .|.||+|+|+|.++..
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~ 56 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKLVEGEV 56 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEEEESCE
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEEeeCCc
Confidence 5788875555 6899999999999999999999999998 9999999999987643
No 20
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.32 E-value=3.1e-12 Score=105.82 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
.|++|+|.++||..+++++++|+||||+|+++||++++.|+ .|.||||+|+|.++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v~~G~~ 58 (338)
T 1krh_A 2 SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFCESGNY 58 (338)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEEEECCE
T ss_pred CceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEEecCcE
Confidence 47899999888888999999999999999999999999998 9999999999987654
No 21
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.31 E-value=3.1e-12 Score=89.63 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
+++|+|+.++| .+++++++|+||||+++++| ++|+.|+ .|.||+|+|+|.++..
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~~G~~ 54 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIVSGTV 54 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEEESCE
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEecCcc
Confidence 46789876666 68999999999999999999 9999998 9999999999987643
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.16 E-value=3.5e-11 Score=110.22 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
.|++|+|. ++| +++++++|+||||+++++|+++|+.|+|.|.||||+|+|.++..
T Consensus 2 ~m~~V~~~-~sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v 56 (631)
T 3zyy_X 2 AEYKVLFK-PDQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQK 56 (631)
T ss_dssp -CEEEEEE-TTT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCE
T ss_pred CceEEEEe-cCC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcc
Confidence 48899998 677 89999999999999999999999999999999999999998654
No 23
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.16 E-value=9.9e-12 Score=92.85 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=48.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
..+|.+|++. .+| ..++++++|+|||++|+++|+++|+.|+ .|.||||+|+|.++..
T Consensus 24 f~~m~~i~i~-~~g-~~~v~v~~g~tlL~aa~~~Gi~i~~~C~-~G~CgtC~v~v~~G~v 80 (128)
T 1doi_A 24 FGEASDMDLD-DED-YGSLEVNEGEYILEAAEAQGYDWPFSCR-AGACANCAAIVLEGDI 80 (128)
T ss_dssp HHHHHHSCCC-TTT-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE
T ss_pred cccccEEEEE-eCC-cEEEEECCCCcHHHHHHHcCCCCccCCC-ccCCCCCEeEEecCCc
Confidence 3457777774 677 2389999999999999999999999995 9999999999987654
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.08 E-value=1e-10 Score=96.72 Aligned_cols=55 Identities=20% Similarity=0.484 Sum_probs=48.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEEcCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMVHYW 133 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~~~~l 133 (151)
+..++|+|. +.| +++++++|+||||+++++|+++|++|+ .|.||||+|+|.++..
T Consensus 235 ~~~~~v~~~-~~~--~~~~~~~~~~ll~a~~~~g~~~~~~C~-~G~Cg~C~~~v~~G~~ 289 (321)
T 2pia_A 235 NTPFTVRLS-RSG--TSFEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTALCSGEA 289 (321)
T ss_dssp CCCEEEEET-TTC--CEEEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEEEESCE
T ss_pred CccEEEEEe-CCC--eEEEECCCCcHHHHHHHcCCCCCCCCC-CCCCCCCEEEEecCcc
Confidence 456788875 455 689999999999999999999999995 9999999999998654
No 25
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.51 E-value=2e-07 Score=72.15 Aligned_cols=52 Identities=17% Similarity=0.434 Sum_probs=44.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEE
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~ 129 (151)
+...|+|. .+|+.+++++++|++||++++++ |+. .+..|+ .|.||+|.|.|.
T Consensus 8 ~~m~i~~~-ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~-~G~CGaC~V~vd 61 (168)
T 1t3q_A 8 QLMRISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILID 61 (168)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEET
T ss_pred CcceEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCC-CCCCCCcEEEEC
Confidence 33456665 57888899999999999999997 997 889998 899999999994
No 26
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.19 E-value=1.5e-06 Score=80.48 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCC-----CCCceecccEEEEE
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----EGSLACSTCHVIVM 129 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aC-----gG~g~CgTChV~v~ 129 (151)
|++|+ .|| +++++++|+|||++++++||++|+.| ++.|+|+.|.|.|.
T Consensus 1 mv~i~---idg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~ 53 (783)
T 3i9v_3 1 MVRVK---VND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIG 53 (783)
T ss_dssp CEEEE---CSS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEE
T ss_pred CeEEE---ECC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEec
Confidence 45555 468 58899999999999999999999999 56899999999995
No 27
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.04 E-value=8.7e-06 Score=63.07 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
..|+|. .+|+.++++++++++||++++++ |+ .....|+ .|.||+|.|.|..
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~vdG 56 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIFNG 56 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEETT
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEECC
Confidence 456765 57988999999999999999986 77 4678897 9999999999964
No 28
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.93 E-value=1.9e-05 Score=61.37 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=41.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEEc
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~~ 130 (151)
.|+|. .+|+.++++++++++||+++++. |+. ....|+ .|.||+|.|.|..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~-~G~CGaCtV~vdG 56 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDLDG 56 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEETT
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCC-CCCCCCCEEEECC
Confidence 46665 57988999999999999999985 653 578897 8999999999964
No 29
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.90 E-value=2.3e-05 Score=60.71 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=41.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
.|+|. .+|+.++++++++++||+++++. |+ .....|+ .|.||+|.|.|..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~-~G~CGaCtV~vdG 56 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDIDG 56 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEETT
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCC-CCCCCCCEEEECC
Confidence 45654 57988999999999999999984 65 3578898 8999999999964
No 30
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.88 E-value=1.8e-05 Score=71.12 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=40.1
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCCCcCCCC-----C-CceecccEEEEEcC
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----G-SLACSTCHVIVMVH 131 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCg-----G-~g~CgTChV~v~~~ 131 (151)
.|| +++++++|+|||++++++|+.+|..|. + .|.|+.|.|.|...
T Consensus 6 ing--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~ 56 (574)
T 3c8y_A 6 ING--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGT 56 (574)
T ss_dssp ETT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTT
T ss_pred ECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCC
Confidence 467 678899999999999999999999887 6 89999999998543
No 31
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.88 E-value=2.3e-05 Score=60.31 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=42.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
.|+|. .+|+.+++++++|++||+++++. |+ .....|+ .|.||.|-|.|..
T Consensus 4 ~i~~~-vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~-~G~CGaCtV~vdG 55 (161)
T 1rm6_C 4 ILRLT-LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLVDD 55 (161)
T ss_dssp EEEEE-ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEETT
T ss_pred eEEEE-ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCC-CCCCCCCEEEECC
Confidence 45655 58988999999999999999997 76 4678998 8999999999954
No 32
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=97.49 E-value=0.00011 Score=58.36 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=34.3
Q ss_pred EEEEEeCCCchHHHHHHHCCC------CCcCCCCCCceecccEEEEE
Q 031881 89 EKNIKVPVGMSMLEAAHENDI------ELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 89 ~~tv~v~~G~sLLdaa~~~gI------~l~~aCgG~g~CgTChV~v~ 129 (151)
.+++++++|+||||+++++|+ .....|+ .|.||+|.|.|.
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~-~G~Cg~C~v~v~ 70 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN 70 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEET
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCCC-CCcCCCCEeEEC
Confidence 478899999999999999983 3567895 999999999984
No 33
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=97.42 E-value=0.00014 Score=57.77 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=33.2
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCCcCCCCCCceecccEEEEE
Q 031881 89 EKNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 89 ~~tv~v~~G~sLLdaa~~~g------I~l~~aCgG~g~CgTChV~v~ 129 (151)
.+++++++|+||||++++.+ +.....|+ .|.||+|.|.|.
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i~ 70 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMIN 70 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEET
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEEC
Confidence 36788999999999999754 34457897 899999999994
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.29 E-value=0.00025 Score=56.12 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=35.0
Q ss_pred EEEEEeCC--CchHHHHHHHCC-----CCCcCCCCCCceecccEEEEEc
Q 031881 89 EKNIKVPV--GMSMLEAAHEND-----IELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 89 ~~tv~v~~--G~sLLdaa~~~g-----I~l~~aCgG~g~CgTChV~v~~ 130 (151)
.+++++++ |+||||++++.+ +...++|+ .|.||+|.|.|..
T Consensus 22 ~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v~G 69 (238)
T 2wdq_B 22 DYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNMNG 69 (238)
T ss_dssp EEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEETT
T ss_pred EEEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEECC
Confidence 36788988 999999999987 45568997 8999999999954
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.07 E-value=0.00065 Score=54.62 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=33.2
Q ss_pred EEEEEeCC-CchHHHHHHHCCC------CCcCCCCCCceecccEEEEEc
Q 031881 89 EKNIKVPV-GMSMLEAAHENDI------ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 89 ~~tv~v~~-G~sLLdaa~~~gI------~l~~aCgG~g~CgTChV~v~~ 130 (151)
++++++++ |+||||++++.++ .....|+ .|.||+|.|.|..
T Consensus 32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i~G 79 (252)
T 2h88_B 32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNIAG 79 (252)
T ss_dssp EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEETT
T ss_pred EEEEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEECC
Confidence 46788888 9999999999762 2356896 9999999999853
No 36
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.89 E-value=0.0014 Score=61.91 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
|.+|+|. .+|+.++++++++++||+++++. |+ .....|+ .|.||+|-|.|..
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~g~CGaCtv~vdg 54 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVILDG 54 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEETT
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCC-CCCcCccEEEECC
Confidence 3457776 68999999999999999999984 65 5678998 8999999999954
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.76 E-value=0.0012 Score=51.39 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCCCEE-EEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEE
Q 031881 85 KDGEEK-NIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 85 ~dG~~~-tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~ 129 (151)
.+|+.+ +++++++++||+.+++. |+ .....|+ .|.||.|-|.|.
T Consensus 9 vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlvd 55 (164)
T 3nvw_A 9 VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS 55 (164)
T ss_dssp ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred ECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEEc
Confidence 368664 56899999999999986 76 4678897 999999999997
No 38
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.67 E-value=0.002 Score=56.78 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=40.5
Q ss_pred EEEEEcCCCCEEEE-EeCCCchHHHHHHHCCCC-CcCCCCCCceecccEEEE
Q 031881 79 NVTFVDKDGEEKNI-KVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIV 128 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv-~v~~G~sLLdaa~~~gI~-l~~aCgG~g~CgTChV~v 128 (151)
.|+|. .+|+.+++ +++++++||+++++.|+. ....|+ .|.||.|-|.|
T Consensus 2 ~~~~~-vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~-~G~CGaCtV~v 51 (462)
T 2w3s_A 2 EIAFL-LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCN-EGDCGACTVMI 51 (462)
T ss_dssp EEEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEE
T ss_pred cEEEE-ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCC-CCCcCCcEEEE
Confidence 35555 57988888 889999999999965764 678898 89999999999
No 39
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.66 E-value=0.0017 Score=61.37 Aligned_cols=51 Identities=16% Similarity=0.357 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CCcCCCCCCceecccEEEEEc
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~-gI-~l~~aCgG~g~CgTChV~v~~ 130 (151)
.+|+|. .+|+.+++++.++++||+++++. |+ .....|+ .|.||+|-|.|..
T Consensus 2 ~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~G~CGaCtv~vdg 54 (907)
T 1dgj_A 2 ETKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVILDG 54 (907)
T ss_dssp EEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEETT
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCC-CCCcCceEEEECC
Confidence 456665 67988999999999999999985 55 4678898 8999999999964
No 40
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=96.64 E-value=0.0034 Score=52.24 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=33.3
Q ss_pred EEEEEeCC-CchHHHHHHHCCCC------CcCCCCCCceecccEEEEEc
Q 031881 89 EKNIKVPV-GMSMLEAAHENDIE------LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 89 ~~tv~v~~-G~sLLdaa~~~gI~------l~~aCgG~g~CgTChV~v~~ 130 (151)
.++|++.+ |++|||++++.+.+ ....|+ .|.||+|.|.|..
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~InG 103 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICGSCAMNIAG 103 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCCCCEEEECC
Confidence 57788888 99999999986543 236798 7999999999864
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.08 E-value=0.019 Score=49.60 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=34.1
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCC---C--CCceecccEEEEEc
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC---E--GSLACSTCHVIVMV 130 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aC---g--G~g~CgTChV~v~~ 130 (151)
|+|. .|| +.+++.+|+||++++.++|+++...| . |...|+.|.|.|..
T Consensus 16 v~~~-~dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~g 68 (493)
T 1y56_A 16 VTIY-FEG--KELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVNG 68 (493)
T ss_dssp EEEE-ETT--EEEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSSS
T ss_pred EEEE-ECC--EEEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEECC
Confidence 5544 478 67899999999999999999762211 1 23337789998753
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=92.83 E-value=0.097 Score=51.53 Aligned_cols=48 Identities=15% Similarity=0.361 Sum_probs=38.9
Q ss_pred EEEEcCCCCEEEE-EeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEE
Q 031881 80 VTFVDKDGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 80 Vtfi~~dG~~~tv-~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~ 129 (151)
|+|. .+|+.+++ +++++++||+.++++ |+- ....|+ .|.||.|-|.|.
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~~ 56 (1332)
T 3unc_A 6 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS 56 (1332)
T ss_dssp EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred EEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEEe
Confidence 5554 46877765 689999999999985 763 578897 999999999995
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=91.12 E-value=0.24 Score=46.66 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCC-----------CCCceecccEEEEE
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----------EGSLACSTCHVIVM 129 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aC-----------gG~g~CgTChV~v~ 129 (151)
.+-.|+|. .|| .++++.+|+||.+|++.+|+.+...| . .+.|.-|.|.+.
T Consensus 19 ~~~~~~~~-~dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~ 79 (965)
T 2gag_A 19 REEALSLT-VDG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEEE-ETT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEEC
T ss_pred CCCeEEEE-ECC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEc
Confidence 33445554 578 78899999999999999999866544 3 477999999997
No 44
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=86.87 E-value=1.1 Score=32.03 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCCCceEEEEEcCCCCEE--EEEeCCCchHHHHHHHCC
Q 031881 73 KQKDMINVTFVDKDGEEK--NIKVPVGMSMLEAAHEND 108 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~--tv~v~~G~sLLdaa~~~g 108 (151)
+..+.++|++++++|+.. +|. +.|++|+|++.++.
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred cceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 345778999999888664 566 77999999999988
No 45
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=86.76 E-value=0.9 Score=32.33 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHC----CCCCcCCCCCCceecccEEEEE
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHEN----DIELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~----gI~l~~aCgG~g~CgTChV~v~ 129 (151)
+....+.+.+ |+++...|+|.+|+||-||+.++ || .+..|.|+..
T Consensus 15 ~~~~~irvhL--PNqQrT~V~VrpG~tlrdAL~KaLk~R~L----------~pe~C~Vy~~ 63 (95)
T 2l05_A 15 PQKPIVRVFL--PNKQRTVVPARCGVTVRDSLKKALMMRGL----------IPECCAVYRI 63 (95)
T ss_dssp CCSCEEEEEE--TTTEEEEEECCTTCBHHHHHHHHHHHHTC----------CGGGEEEEEE
T ss_pred CCccEEEEEC--CCCCeEEEEecCCcCHHHHHHHHHHHcCC----------CHHHcEEEEc
Confidence 3344555554 88888899999999998876653 45 4446667644
No 46
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=84.73 E-value=1.2 Score=31.27 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCCc
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIELE 112 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l~ 112 (151)
....|+.|.+.++.|.+.++++.+.+|+.+. +.+.|++.+
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~ 60 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPN 60 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGG
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHH
Confidence 5578999999999999999999999999864 334566543
No 47
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=83.71 E-value=1.2 Score=31.66 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHC----CCCCcCCCCCCceecccEEEEE
Q 031881 69 HGSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHEN----DIELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 69 ~~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~----gI~l~~aCgG~g~CgTChV~v~ 129 (151)
|...-+...+.|.+ |+++...|+|.+|++|-|++.++ |+ .+..|.|+..
T Consensus 7 ~~~~~~~~~irvhL--PNqQrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~Vy~~ 59 (96)
T 3ny5_A 7 HHSHMQKPIVRVFL--PNKQRTVVPARCGVTVRDSLKKALMMRGL----------IPECCAVYRI 59 (96)
T ss_dssp ---CCSSCEEEEEE--TTTEEEEEECCTTCBHHHHHHHHHHTTTC----------CGGGEEEEEC
T ss_pred hhhhhhhCEEEEEC--CCCceEEEEecCCcCHHHHHHHHHHHcCC----------ChHHeEEEEc
Confidence 34445566667765 88888899999999998876553 44 4456777754
No 48
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=82.83 E-value=1.4 Score=43.39 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=37.2
Q ss_pred EEEEcCCCCEEEE-EeCCCchHHHHHHHC-CCC-CcCCCCCCceecccEEEEEc
Q 031881 80 VTFVDKDGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMV 130 (151)
Q Consensus 80 Vtfi~~dG~~~tv-~v~~G~sLLdaa~~~-gI~-l~~aCgG~g~CgTChV~v~~ 130 (151)
++|. .+|+..++ .+.+.+|||+-++++ ++- -...|+ .|-||.|-|.|.+
T Consensus 10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~-EG~CGACtV~v~~ 61 (1335)
T 3zyv_A 10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCG-GGDCGACTVMISR 61 (1335)
T ss_dssp EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred EEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccC-CCCCcceEEEEee
Confidence 4444 46866655 367899999999985 663 467898 9999999999863
No 49
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.48 E-value=1.2 Score=31.13 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 031881 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (151)
Q Consensus 72 ~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~ 106 (151)
++....+.+.+ |+++...|+|.+|++|-||+.+
T Consensus 4 ~k~~~~irvhL--Pn~QrT~V~VrpG~tlrdaL~K 36 (86)
T 1wxm_A 4 GSSGGTVKVYL--PNKQRTVVTVRDGMSVYDSLDK 36 (86)
T ss_dssp CCCSSEEEEEC--SSSCEEEEECCSSCBSHHHHHH
T ss_pred ccccceEEEEC--CCCCeEEEEecCCcCHHHHHHH
Confidence 45566777766 8888899999999998887654
No 50
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.34 E-value=0.87 Score=32.00 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=27.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHH----CCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHE----NDIE 110 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~~----~gI~ 110 (151)
.|+++.++|...+|.+.++.+|.|++++ .|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 7888889999999999999998887554 5665
No 51
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=81.92 E-value=1.5 Score=34.20 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHEND 108 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~g 108 (151)
.+-.|++|.|+++-|...++++..++.||++.+..|
T Consensus 3 ~~~tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG 38 (184)
T 3kdv_A 3 DPFTMLHIEFITDLGAKVTVDVESADKLLDVQRQYG 38 (184)
T ss_dssp CCSCCEEEEEECTTCCEEEEEESSGGGHHHHHHHHH
T ss_pred CccceEEEEEecCCCceEEEecCCHHHHHHHHHHhh
Confidence 356799999999999999999999999999999875
No 52
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=80.46 E-value=3.3 Score=30.10 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+..++.|+|.+..|+..++++.+.+|+.++
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHH
Confidence 3455689999999999999999999998664
No 53
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.18 E-value=2.2 Score=30.10 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCCc
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIELE 112 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l~ 112 (151)
...+|+.|++.+..|+..++++.+.+|+.++ +...|++.+
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 4457899999998899999999999998764 334577654
No 54
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=78.87 E-value=1.5 Score=31.85 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHHHC----CCCCcCCCCCCceecccEEEEE
Q 031881 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHEN----DIELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 70 ~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~----gI~l~~aCgG~g~CgTChV~v~ 129 (151)
.|++....+.+.+ |+++...|+|.+|++|-|++.++ || .+-.|.|+..
T Consensus 13 sp~k~~~~ir~hL--PNqQrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~Vy~~ 64 (107)
T 1rrb_A 13 SSSKTSNTIRVFL--PNKQRTVVNVRNGMSLHDCLMKALKVRGL----------QPECCAVFRL 64 (107)
T ss_dssp ------CEEEEEC--TTTCCEEEECCTTCBHHHHHHHHHHHHTC----------CTTTEEEEEC
T ss_pred CCccccceEEEEC--CCCCeEEEEecCCcCHHHHHHHHHHHcCC----------CHHHceeEEc
Confidence 3445555666665 78888899999999998876653 55 2446777754
No 55
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.67 E-value=4.1 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+..++|++...+|+..++++++.+|+.|.
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHH
Confidence 456689999989999999999999998653
No 56
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=75.97 E-value=6.2 Score=25.99 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=31.9
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCCc
Q 031881 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIELE 112 (151)
Q Consensus 70 ~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l~ 112 (151)
.++.+...++|++.+.+|+..++++.+.+|+.+.= ...|++..
T Consensus 10 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 10 SGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp -CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 34455677899999889999999999999888642 34466543
No 57
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=73.97 E-value=5.6 Score=26.21 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=27.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCC-CchHHHHHHHCCCCCcCCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPV-GMSMLEAAHENDIELEGAC 115 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~-G~sLLdaa~~~gI~l~~aC 115 (151)
++..+++|++ +||+. .+++. |.|++|.|.+-+-.+...|
T Consensus 7 ~~~~~i~I~l--pdG~~--~~~~~~~~T~~dia~~i~~~l~~~~ 46 (88)
T 1wwt_A 7 GDSKPIKVTL--PDGKQ--VDAESWKTTPYQIACGISQGLADNT 46 (88)
T ss_dssp CSCCEEEEEC--TTSCE--EEEETTTCCHHHHHHHSSTTTGGGC
T ss_pred CCCCCEEEEE--CCCCE--EEcccCCCCHHHHHHHhhhccccce
Confidence 4557777776 67854 55666 8999999998765554333
No 58
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=73.88 E-value=8 Score=24.80 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=29.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+..+.|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 44567899999889999999999999887643 2346654
No 59
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=72.36 E-value=4.5 Score=27.28 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=27.6
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 70 ~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
.++..+..++|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 15 NLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp -------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 34466777899998889999999999999987642 3346654
No 60
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=72.05 E-value=9.5 Score=25.67 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=30.6
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCC
Q 031881 68 SHGSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIE 110 (151)
Q Consensus 68 ~~~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~ 110 (151)
+|........+.|++....| ..++++.+.+|+.+. ....|++
T Consensus 6 ~~~~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip 51 (94)
T 2kan_A 6 HHHSHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP 51 (94)
T ss_dssp CCCSCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC
T ss_pred ccccccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 34555667778999887777 789999999998763 2335665
No 61
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=71.41 E-value=4.3 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHC
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHEN 107 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~ 107 (151)
.+.+.+ |+++...|+|.+|++|-||+.++
T Consensus 3 ~irvhL--Pn~QrT~V~VrpG~tlrdaL~Ka 31 (77)
T 1c1y_B 3 TIRVFL--PNKQRTVVNVRNGMSLHDCLMKA 31 (77)
T ss_dssp EEEEEE--TTTEEEEEECCTTCBHHHHHHHH
T ss_pred eEEEEC--CCCceEEEEecCCcCHHHHHHHH
Confidence 345555 88888899999999998876653
No 62
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.82 E-value=8 Score=27.71 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
-+.+.+.|+|.+..|..+++++.+.+|+.++
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 4556789999988999999999999998664
No 63
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.81 E-value=9 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=28.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
+..+++|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 45 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK 45 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh
Confidence 3467789988888988899999999987643 3456653
No 64
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.99 E-value=12 Score=23.45 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+++|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~ 45 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV 45 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 466788888888988899999999887643 3456653
No 65
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=66.35 E-value=9.8 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.++.|++...+|+..++++.+.+|+.+.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~l 31 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEF 31 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHH
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 5678999888999999999999988764
No 66
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=64.23 E-value=11 Score=23.73 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
.+++|++...+|+..++++.+.+|+.+.- ...+++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 35688898889999999999999887642 3346654
No 67
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=61.58 E-value=19 Score=24.45 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=28.1
Q ss_pred cCCCCCCCCCceEEEEEcCCCC--EEEEEeCCCchHHHH
Q 031881 67 ASHGSNKQKDMINVTFVDKDGE--EKNIKVPVGMSMLEA 103 (151)
Q Consensus 67 ~~~~~~~~~~~v~Vtfi~~dG~--~~tv~v~~G~sLLda 103 (151)
|+|....++..++|.+....++ ..++++++.+|+.+.
T Consensus 5 ~~~~~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~L 43 (95)
T 2kjr_A 5 HHHHSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQL 43 (95)
T ss_dssp CCCCCCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHH
T ss_pred ccccccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHH
Confidence 3456667789999988865553 688999999998764
No 68
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=61.22 E-value=10 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=25.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+..+++|++.+.+|...++++.+.+++.++
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~l 47 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKL 47 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHH
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4557789999999999999999999987663
No 69
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=60.76 E-value=15 Score=23.08 Aligned_cols=36 Identities=6% Similarity=0.152 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+.|++.+.+|+..++++.+.+|+.+.= ...|++.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 34688888889999999999999887542 2346654
No 70
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.56 E-value=12 Score=24.67 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=23.3
Q ss_pred CCCCceEEEEEcCCCC--EEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGE--EKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~--~~tv~v~~G~sLLda 103 (151)
.+..+++|++...+|. ..++++++.+|+.+.
T Consensus 3 ~~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 3 SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp CCSCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CCCcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 3456789999888886 567777799988764
No 71
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=60.54 E-value=8.9 Score=25.59 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=20.1
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 70 ~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.++.+..+++|++.+ |+..++++.+.+|+.+.
T Consensus 12 ~~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~L 43 (93)
T 2l7r_A 12 SGLVPRGSMQLFVRA--QELHTFEVTGQETVAQI 43 (93)
T ss_dssp --------CEEEEES--SSEEEEECCSSCBHHHH
T ss_pred cCCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHH
Confidence 455666778898875 88899999999988764
No 72
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=60.35 E-value=14 Score=25.12 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=27.8
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 69 HGSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 69 ~~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
..++..+.+++|++...+|. .++++.+.+|+.+.
T Consensus 14 ~~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 47 (100)
T 1yqb_A 14 LVPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 47 (100)
T ss_dssp TCCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHH
T ss_pred CCCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHH
Confidence 36778889999999987774 78999999988764
No 73
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=60.10 E-value=26 Score=22.78 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=26.2
Q ss_pred CCCCCCceEEEEEcCCCC-EEEEEeCCCchHHHH
Q 031881 71 SNKQKDMINVTFVDKDGE-EKNIKVPVGMSMLEA 103 (151)
Q Consensus 71 ~~~~~~~v~Vtfi~~dG~-~~tv~v~~G~sLLda 103 (151)
+|.+.+.++|.+.+.+|. ...+.+...++|-.+
T Consensus 1 ~p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl 34 (79)
T 3a4r_A 1 GPLGSQELRLRVQGKEKHQMLEISLSPDSPLKVL 34 (79)
T ss_dssp CTTCCCCEEEEEECSSTTCEEEEEECTTSCHHHH
T ss_pred CCCCCCEEEEEEEeCCCCEEEEEEECCCChHHHH
Confidence 356678899999999995 889999999874443
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=59.49 E-value=10 Score=27.79 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=28.9
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEeCCCchHHH----HHHHCCCCC
Q 031881 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLE----AAHENDIEL 111 (151)
Q Consensus 70 ~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLd----aa~~~gI~l 111 (151)
.++.+..++.|++.+.+|+..++++.+.+|+.+ +....|++.
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 344666778999988899889999999999987 334456654
No 75
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=58.81 E-value=15 Score=23.71 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
...++.|++.+.+|...++++.+.+|+.+.- ...|++.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 3466799999889999999999999988642 2346654
No 76
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.56 E-value=23 Score=22.70 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=27.4
Q ss_pred CCceEEEEEcCCC-CEEEE-EeCCCchHHHHH----HHCCCCC
Q 031881 75 KDMINVTFVDKDG-EEKNI-KVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG-~~~tv-~v~~G~sLLdaa----~~~gI~l 111 (151)
..++.|++...+| +..++ ++.+.+|+.+.- ...|++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~ 47 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP 47 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh
Confidence 4678999988888 68999 599999987643 2456653
No 77
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=57.99 E-value=17 Score=22.87 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~----~~gI~l 111 (151)
+.++|++.+.+|+..++++.+.+++.+.-. +.|++.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 457888988999999999999998766432 346653
No 78
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.48 E-value=19 Score=23.73 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~ 106 (151)
+.+++|++...+|...++++.+.+++.+.-..
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~ 36 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSK 36 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 46688988878898889999999999876543
No 79
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.58 E-value=16 Score=24.85 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=24.5
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 71 ~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+.++.+++|++...+|...++++...+|+.+.
T Consensus 17 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 49 (106)
T 1ttn_A 17 PPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHM 49 (106)
T ss_dssp ----CCSEEEEEEETTTEEEEEEECTTSHHHHH
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 334566789998888898889999999988764
No 80
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=55.01 E-value=18 Score=23.57 Aligned_cols=36 Identities=6% Similarity=0.152 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
.++.|++.+.+|+..++++.+.+|+.+.- ...|++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 42 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 46788888888988999999999887643 2356653
No 81
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=54.73 E-value=7.1 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCEEEEEeC--CCchHHHH
Q 031881 77 MINVTFVDKDGEEKNIKVP--VGMSMLEA 103 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~--~G~sLLda 103 (151)
|++|++.+..|...++++. +.+|+.+.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 5789999999987877755 99999874
No 82
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=54.60 E-value=23 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCCCCCCCceEEEEEcCCCCEE-EEEeCCCchHHHH
Q 031881 69 HGSNKQKDMINVTFVDKDGEEK-NIKVPVGMSMLEA 103 (151)
Q Consensus 69 ~~~~~~~~~v~Vtfi~~dG~~~-tv~v~~G~sLLda 103 (151)
|-..+.++.+.|+|...+|... .+++.+.+|+.++
T Consensus 8 ~~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~l 43 (126)
T 1se9_A 8 HLEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSAL 43 (126)
T ss_dssp --CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHH
T ss_pred hhhhhhcccEEEEEEECCCCEEEeeecCccCHHHHH
Confidence 3344555788999999999777 6999999998664
No 83
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=53.56 E-value=23 Score=22.42 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+++|++...+|+..++++.+.+|+.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 4578888888899899999999987764
No 84
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.28 E-value=38 Score=23.75 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCCCCCceecccEEEEE
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aCgG~g~CgTChV~v~ 129 (151)
++..|.|...||..+++.|.+++|-.|+++.--... ...+..|+.+++
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~------~~~~~~~WaLvE 55 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRA------HALSDETWGLVE 55 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSS------SCCCCCCCCEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHc------CCCCCCCeEEEE
Confidence 445566666899999999999999999988643322 134456666664
No 85
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=52.49 E-value=6.7 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHCCCCCc
Q 031881 90 KNIKVPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~l~ 112 (151)
.+..|.+||||-.+|.++|+.+.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~ 25 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIK 25 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHH
T ss_pred EEEEEcCCCcHHHHHHHHCcCHH
Confidence 35678999999999999998753
No 86
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=52.20 E-value=12 Score=23.67 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCCc
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIELE 112 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l~ 112 (151)
++.|++...+|+..++++.+.+|+.+.- ...+++..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~ 42 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPD 42 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 4688888888998999999999887653 23466543
No 87
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.57 E-value=12 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
|++|++...+|+..++++.+.+|+.+.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~L 27 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILET 27 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 567888888899999999999998864
No 88
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=47.97 E-value=10 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=25.4
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCchHHHHHHHCCCC
Q 031881 76 DMINVTFVDKDG-EEKNIKVPVGMSMLEAAHENDIE 110 (151)
Q Consensus 76 ~~v~Vtfi~~dG-~~~tv~v~~G~sLLdaa~~~gI~ 110 (151)
=.+.|.+-.++. ....+++++|.|+.|++.+.|++
T Consensus 13 ~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 13 INIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred EEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 344555555553 23567899999999999999984
No 89
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=47.69 E-value=24 Score=24.23 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=22.4
Q ss_pred CCCCceEEEEEcCCCCEEEE--EeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNI--KVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv--~v~~G~sLLda 103 (151)
.....++|++.+..|...++ ++.+.+|+.+.
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~l 47 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQI 47 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHH
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHH
Confidence 45567799999988986566 66699999874
No 90
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=47.43 E-value=20 Score=23.87 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=24.0
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCCCcCCC
Q 031881 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC 115 (151)
Q Consensus 80 Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~l~~aC 115 (151)
|.+..|+|+ .++.+.|.|.+|+|.+-+-++...|
T Consensus 8 i~v~tP~G~--~~~lp~GaT~~D~A~~Ih~~lg~~~ 41 (78)
T 3hvz_A 8 VFVFTPKGD--VISLPIGSTVIDFAYAIHSAVGNRM 41 (78)
T ss_dssp EEEECTTSC--EEEEETTCBHHHHHHHHCHHHHHTE
T ss_pred EEEECCCCC--EEEecCCCCHHHHHHHhhhhhhcce
Confidence 444559994 5678999999999987554444333
No 91
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=46.64 E-value=31 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
-.+|++.+..|+..++++.+.+|+.+.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~L 36 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVV 36 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHH
Confidence 458888888999999999999998764
No 92
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=45.98 E-value=44 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.7
Q ss_pred CEEEEEeCCCchHHHHHHHCCCCCc
Q 031881 88 EEKNIKVPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~gI~l~ 112 (151)
...++++++|.|+.|.+.+.||+..
T Consensus 11 ~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 11 ETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp SEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred cceeEEcCCCCcHHHHHHHcCCCcc
Confidence 3467899999999999999999865
No 93
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=45.52 E-value=28 Score=21.14 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=24.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
+|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~ 38 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 57777788988999999999887643 2346653
No 94
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.33 E-value=40 Score=22.06 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=27.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIEL 111 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l 111 (151)
+..+++|++... |...++++.+.+|+.+. ....|++.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 54 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA 54 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 357789998877 88899999999988763 23456653
No 95
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=44.90 E-value=30 Score=23.40 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=27.1
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCch---HHHHHHH-CCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMS---MLEAAHE-NDIEL 111 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~s---LLdaa~~-~gI~l 111 (151)
..+.++|.+.+.+|++..+++...++ |+++..+ .|++.
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 34678999999999999999999986 4444433 46653
No 96
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=44.43 E-value=21 Score=22.16 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.3
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCCC
Q 031881 85 KDGEEKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 85 ~dG~~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
++|+ ..+++.|.|++|.|.+-+.++
T Consensus 8 p~g~--~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 8 PKGE--IKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp TTCC--EEEECTTCBHHHHHHHHCSHH
T ss_pred CCCC--EEEcCCCCcHHHHHHHHhhcc
Confidence 6785 467789999999998765443
No 97
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=43.15 E-value=31 Score=23.68 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=28.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
...++|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh
Confidence 356789998889999999999999887643 2346654
No 98
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.80 E-value=34 Score=22.93 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=27.6
Q ss_pred CCCCceEEEEEcCCCCEE-EEEeCCCchHHHHH----HHCCCCC
Q 031881 73 KQKDMINVTFVDKDGEEK-NIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~-tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+++++|++.. .|+.+ ++++...+|+.+.= ...||+.
T Consensus 3 ~~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 3 SGSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp SCCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred CCCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 445788998884 57788 59999999987643 3467753
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.71 E-value=39 Score=22.51 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=27.9
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCCC
Q 031881 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIEL 111 (151)
Q Consensus 71 ~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~----~~gI~l 111 (151)
+..++.+++|++. ..|+.+++++++.+|+.+.=. ..||+.
T Consensus 11 ~~~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 11 GGVGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CCCCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred CCCCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 3345567888887 457788999999999876433 346653
No 100
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=42.31 E-value=33 Score=20.81 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=23.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIE 110 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~ 110 (151)
+|++...+|+..++++++.+|+.+.- ...|++
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 56777788988999999999887643 234665
No 101
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=41.98 E-value=12 Score=28.97 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=20.1
Q ss_pred hHHHHHHHCCCCCc------CCCCCCceecccEEEEE
Q 031881 99 SMLEAAHENDIELE------GACEGSLACSTCHVIVM 129 (151)
Q Consensus 99 sLLdaa~~~gI~l~------~aCgG~g~CgTChV~v~ 129 (151)
.+.+ +.+.|++.. -.|| -|.|+.|.|.+.
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACG-IGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCc-ccccccCCcccc
Confidence 3444 555677532 5676 999999999864
No 102
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=40.25 E-value=35 Score=22.16 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=25.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCCc
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIELE 112 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l~ 112 (151)
+|++.+.+|+..++++.+.+|+.+. ....|++.+
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 39 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChh
Confidence 5777778899999999999988763 233466543
No 103
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.99 E-value=64 Score=20.85 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCC-----chHHHHH----HHCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVG-----MSMLEAA----HENDIE 110 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G-----~sLLdaa----~~~gI~ 110 (151)
...+++|++.. .|+.+++++.+. .|+.+.- ...|++
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 34688999886 578889999985 7776532 235665
No 104
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=39.30 E-value=69 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 71 ~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+..+.+.+.|.+.+.+|....+.+...++|-.+
T Consensus 20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL 52 (110)
T 2k8h_A 20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKL 52 (110)
T ss_dssp CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHH
T ss_pred CCCCCCeEEEEEECCCCCEEEEEECCCChHHHH
Confidence 335567789999999999899999999875443
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.09 E-value=81 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchH---HHHHH-HCCCCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSM---LEAAH-ENDIEL 111 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sL---Ldaa~-~~gI~l 111 (151)
...+.++|.+.+.+|....+.+...++| +++.. +.|++.
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~ 62 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 62 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence 3457789999999999999999999874 44433 346654
No 106
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.68 E-value=70 Score=21.35 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCC----CEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 75 KDMINVTFVDKDG----EEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG----~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+++|++..+.| +..++++.+.+|+.+.- ...||+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~ 49 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA 49 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh
Confidence 3557777766543 67889999999886642 2356653
No 107
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=38.23 E-value=39 Score=21.90 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
++|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~ 39 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 39 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 367777788999999999999887632 3446654
No 108
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=37.37 E-value=47 Score=22.35 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCch---HHHHHH-HCCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMS---MLEAAH-ENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~s---LLdaa~-~~gI~l 111 (151)
++.++|.+.+.+|....+++...++ |+++.. +.|++.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 4568899999999999999999986 555443 346653
No 109
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=36.82 E-value=65 Score=21.53 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+.+.++|.+.+.+|....+.+...++|-.+
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl 43 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKL 43 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHH
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHH
Confidence 4457788999999999899999999875443
No 110
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=36.76 E-value=57 Score=22.18 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=27.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+++|++...+|+..++++.+.+|+.+.- ...|++.
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc
Confidence 356789888888988999999999887642 3346553
No 111
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.72 E-value=14 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHCCCCCc
Q 031881 90 KNIKVPVGMSMLEAAHENDIELE 112 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~l~ 112 (151)
.+..|.+||||-.+|.++++.+.
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~ 38 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTME 38 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHH
T ss_pred EEEEECCCCcHHHHHHHHCcCHH
Confidence 46788999999999999998653
No 112
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.65 E-value=53 Score=22.06 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
..+.+++|++...+|. .++++...+|+.+.
T Consensus 13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 42 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 42 (106)
T ss_dssp CCSSEEEEEEECSSCE-EEEEEETTCCHHHH
T ss_pred CCCceEEEEEEeCCCc-EEEEECCCCcHHHH
Confidence 3467889999877774 78999999988764
No 113
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=35.47 E-value=60 Score=21.76 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.8
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
....++|++... |...++++.+.+|+.+.- ...|++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 62 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT 62 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 456788988876 888899999999987632 2346653
No 114
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=35.21 E-value=31 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=21.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCC-chHHHHHHHCCCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVG-MSMLEAAHENDIE 110 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G-~sLLdaa~~~gI~ 110 (151)
-+..+++|++ +| ..++++++ .||.|.+.+.+++
T Consensus 16 ~~~~~M~I~v---NG--e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 16 HIGGRHMLQL---NG--KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp ------CEEE---TT--EEECCSSSCCBHHHHHHHTTCT
T ss_pred CCCcceEEEE---CC--EEEECCCCCCcHHHHHHHhCCC
Confidence 3445556665 46 56777888 9999999998875
No 115
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=34.63 E-value=15 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=17.7
Q ss_pred hHHHHHHHCCCC-----CcCCCCCCceecccE
Q 031881 99 SMLEAAHENDIE-----LEGACEGSLACSTCH 125 (151)
Q Consensus 99 sLLdaa~~~gI~-----l~~aCgG~g~CgTCh 125 (151)
..|+.+.+.|.- ..++|. +|.|+.|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~-~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCL-SGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCC-CSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCC-CCCCCCCC
Confidence 356777777752 468896 45788884
No 116
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=34.23 E-value=50 Score=22.51 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCC--EEEEEeCCCchHHHH
Q 031881 74 QKDMINVTFVDKDGE--EKNIKVPVGMSMLEA 103 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~--~~tv~v~~G~sLLda 103 (151)
.+..+.|++..++|. ..++++++.+|+.+.
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 345688999888886 568899999998763
No 117
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.76 E-value=51 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=20.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
+|++...+|+..++++.+.+|+.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~L 26 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKAL 26 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHH
Confidence 5777778898899999999987664
No 118
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.38 E-value=68 Score=21.15 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCEE--EE-EeCCCchHHHH---HHH--CCCC
Q 031881 75 KDMINVTFVDKDGEEK--NI-KVPVGMSMLEA---AHE--NDIE 110 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~--tv-~v~~G~sLLda---a~~--~gI~ 110 (151)
..|++|++.+..|.+. ++ ++++.+|+.++ +.+ .|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~ 51 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY 51 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC
Confidence 4568899988877553 57 89999987653 444 3665
No 119
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=32.36 E-value=32 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCEEEE-EeCCCchHHHHH----HHCCCCC
Q 031881 75 KDMINVTFVDKDGEEKNI-KVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 75 ~~~v~Vtfi~~dG~~~tv-~v~~G~sLLdaa----~~~gI~l 111 (151)
+.+++|++.. .|+.+++ ++++.+|+.+.= ...||+.
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 4567888774 6777888 889999887643 3467754
No 120
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.18 E-value=91 Score=21.88 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 74 ~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
.+.+++|++... |...++++...+|+.+.
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~L 57 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQF 57 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHH
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHH
Confidence 346789998877 88899999999988764
No 121
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=31.77 E-value=63 Score=19.92 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCEE-EEE-eCCCchHHHHH----HHCCCCC
Q 031881 77 MINVTFVDKDGEEK-NIK-VPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~-tv~-v~~G~sLLdaa----~~~gI~l 111 (151)
.++|++...+|+.. +++ +.+.+|+.+.- ...|++.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~ 42 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP 42 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh
Confidence 35788887888774 898 99999887632 2346653
No 122
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=31.62 E-value=59 Score=19.82 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIE 110 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~ 110 (151)
++|++.. +|...++++++.+|+.+.- ...|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 40 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP 40 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 5777776 7888899999999887643 234665
No 123
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=31.27 E-value=80 Score=22.35 Aligned_cols=36 Identities=6% Similarity=0.152 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~l 111 (151)
..+.|++.+.+|+..++++.+.+|+.+.= ...|++.
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 119 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 119 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH
Confidence 44688888889999999999999987642 2346654
No 124
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.08 E-value=59 Score=21.00 Aligned_cols=35 Identities=6% Similarity=0.071 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCC
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIEL 111 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l 111 (151)
.+.|.+.+.+|+..++++++.+|+.+. +...|++.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP 47 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 347777778999999999999988763 23346653
No 125
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=30.76 E-value=1.2e+02 Score=20.82 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 69 HGSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 69 ~~~~~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
..+.......+|.|.-+||...+-.....++|-++
T Consensus 5 ~p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v 39 (109)
T 2dzk_A 5 SSGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEA 39 (109)
T ss_dssp CCCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHH
T ss_pred CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 34445566788888889999888899999988665
No 126
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=29.67 E-value=39 Score=25.06 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=17.8
Q ss_pred EEEEeCCCchHHHHHHHCCCC
Q 031881 90 KNIKVPVGMSMLEAAHENDIE 110 (151)
Q Consensus 90 ~tv~v~~G~sLLdaa~~~gI~ 110 (151)
.+.+|++||||.+.|++.++.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g 23 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRIS 23 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCC
T ss_pred EEEEECCCCCHHHHHHHhCCC
Confidence 456789999999999998874
No 127
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=28.86 E-value=1.3e+02 Score=20.24 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=26.2
Q ss_pred cCCCCCCCCCceEEEEEcCCC--CEEEEEeCCCchHHHH
Q 031881 67 ASHGSNKQKDMINVTFVDKDG--EEKNIKVPVGMSMLEA 103 (151)
Q Consensus 67 ~~~~~~~~~~~v~Vtfi~~dG--~~~tv~v~~G~sLLda 103 (151)
|+|.-+-.+..++|.+..... ...++++++.+|+.+.
T Consensus 4 ~~~~~~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~L 42 (97)
T 2kj6_A 4 HHHHHSHGDDSVHLHITHANLKSFSADARFSPQMSVEAV 42 (97)
T ss_dssp CCCCCCCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHH
T ss_pred ccccccCCCceEEEEEEECCCCceEEEEEeCCCChHHHH
Confidence 344555667788888774333 3689999999998764
No 128
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=28.80 E-value=67 Score=21.02 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=23.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHCCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAA----HENDIE 110 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa----~~~gI~ 110 (151)
+|++...+|+..++++.+.+|+.+.- ...|++
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~ 37 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 56777788988899999999887643 345665
No 129
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=27.52 E-value=65 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIEL 111 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLda----a~~~gI~l 111 (151)
++|++...+|+..++++.+.+|+.+. ....|++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 40 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA 40 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCG
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 57888778899999999999999876 34457654
No 130
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=27.17 E-value=38 Score=25.98 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCchHHHHHHHCC
Q 031881 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHEND 108 (151)
Q Consensus 77 ~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~g 108 (151)
|++|++ |||+ ..+++.|.|++|.|.+-+
T Consensus 1 ~i~I~~--p~G~--~~~~~~g~T~~dia~~i~ 28 (224)
T 1tke_A 1 MPVITL--PDGS--QRHYDHAVSPMDVALDIG 28 (224)
T ss_dssp CCEEEC--TTSC--EEECSSCBCHHHHHHHHC
T ss_pred CeEEEe--CCCC--EEEecCCCCHHHHHHHHh
Confidence 345655 7885 578889999999997753
No 131
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=25.97 E-value=1.3e+02 Score=20.31 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCEEEEEeC-CCchHHHHHH----HCCCCC
Q 031881 78 INVTFVDKDGEEKNIKVP-VGMSMLEAAH----ENDIEL 111 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~-~G~sLLdaa~----~~gI~l 111 (151)
+.|.|..++|. .++++. +.+|+-+.-. ..||+.
T Consensus 8 M~irvrs~~G~-~~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 8 TMLRVRSRDGL-ERVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp EEEEEECSSCE-EEEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred EEEEEECCCCC-EEEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 56888889895 479999 8888765432 346643
No 132
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=25.84 E-value=84 Score=21.57 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
...+|.+...+|+..++++.+.+|+.+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~L 35 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNV 35 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHH
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHH
Confidence 4568888888999999999999998763
No 133
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=25.81 E-value=1.1e+02 Score=19.03 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCch---HHHHHHH-CCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMS---MLEAAHE-NDIEL 111 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~s---LLdaa~~-~gI~l 111 (151)
++|.+.+.+|+...+.+...++ |+++-.+ .|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 5778888999999999999986 5554443 46653
No 134
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=24.78 E-value=31 Score=23.45 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=16.2
Q ss_pred hHHHHHHHCCCC-----CcCCCCCCceeccc
Q 031881 99 SMLEAAHENDIE-----LEGACEGSLACSTC 124 (151)
Q Consensus 99 sLLdaa~~~gI~-----l~~aCgG~g~CgTC 124 (151)
..|+.+.+.|+= .+..|. +|.|+.|
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~-sgsC~sC 64 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCL-SGSCKSC 64 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSC-SSSSSSC
T ss_pred HHHHHHHHCCCEEEEecCCCCCC-CCCCCCC
Confidence 467778888862 346785 3567766
No 135
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=24.51 E-value=38 Score=28.69 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCchHHHH
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~sLLda 103 (151)
-.+.+++|++.+.+|+..++++...+|+.++
T Consensus 3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~L 33 (368)
T 1oqy_A 3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVL 33 (368)
T ss_dssp ---CCCCEEEEETTTEEEEECCCTTCBHHHH
T ss_pred CCCceEEEEEEeCCCCEEEEEeCCCChHHHH
Confidence 3456778999888898889999999988764
No 136
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.76 E-value=1.4e+02 Score=20.51 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~----~~gI~l 111 (151)
..+.|++.+.+|+..++++.+.+|+.+.-. ..|++.
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 114 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 114 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcCh
Confidence 345777777889999999999998876432 346653
No 137
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.22 E-value=90 Score=21.48 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=24.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCC
Q 031881 79 NVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIE 110 (151)
Q Consensus 79 ~Vtfi~~dG~~~tv~v~~G~sLLdaa~----~~gI~ 110 (151)
+|++...+|...++++.+.+|+.+.-. ..|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 567777889889999999999887433 34665
No 138
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.30 E-value=1.8e+02 Score=19.80 Aligned_cols=32 Identities=3% Similarity=0.121 Sum_probs=24.7
Q ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCchHHHHH
Q 031881 73 KQKDMINVTFVDKDG-EEKNIKVPVGMSMLEAA 104 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG-~~~tv~v~~G~sLLdaa 104 (151)
++.+.++|.+.+++| +...+.+...+.|-...
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm 53 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLM 53 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHH
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHH
Confidence 556888999999999 47889999887654443
No 139
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=22.18 E-value=1.6e+02 Score=20.32 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCch---HHHHHHH-CCCC
Q 031881 73 KQKDMINVTFVDKDGEEKNIKVPVGMS---MLEAAHE-NDIE 110 (151)
Q Consensus 73 ~~~~~v~Vtfi~~dG~~~tv~v~~G~s---LLdaa~~-~gI~ 110 (151)
.+.+.++|.+.+ +|....+.+...+. |+++..+ .|++
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~ 67 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE 67 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 445678888888 99999999999876 5554433 4665
No 140
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=22.04 E-value=12 Score=27.40 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=11.6
Q ss_pred ceecccEEEEEcCCCC
Q 031881 119 LACSTCHVIVMVHYWP 134 (151)
Q Consensus 119 g~CgTChV~v~~~~l~ 134 (151)
-.||+||+....+.|+
T Consensus 11 ~~C~~CH~a~pp~~lp 26 (125)
T 2fwt_A 11 TECSACHMAYPAALLP 26 (125)
T ss_dssp HHTSSSSCCCCGGGSC
T ss_pred HHHHhccCCCCcccCC
Confidence 3689999988764444
No 141
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=21.80 E-value=1.2e+02 Score=23.24 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCCC
Q 031881 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIEL 111 (151)
Q Consensus 76 ~~v~Vtfi~~dG~~~tv~v~~G~sLLdaa~----~~gI~l 111 (151)
-.+.|++...+|+..++++.+.+|+.+.=. ..|++.
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~ 143 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 143 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCH
Confidence 446888888899999999999999886432 346654
No 142
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=21.44 E-value=65 Score=27.79 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.5
Q ss_pred CEEEEEeCCCchHHHHHHHC
Q 031881 88 EEKNIKVPVGMSMLEAAHEN 107 (151)
Q Consensus 88 ~~~tv~v~~G~sLLdaa~~~ 107 (151)
...+|.+++|.+++++++++
T Consensus 313 ~~~~Vtv~~gssll~vLk~a 332 (399)
T 2pmv_A 313 ETINVSVKSGSVLLVVLEEA 332 (399)
T ss_dssp CCEEEESSSCSCHHHHHHHH
T ss_pred cceEEEecCCCCHHHHHHHH
Confidence 44789999999999999886
No 143
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=20.73 E-value=67 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEEEeCCCchHHHHHHHCCCCC
Q 031881 89 EKNIKVPVGMSMLEAAHENDIEL 111 (151)
Q Consensus 89 ~~tv~v~~G~sLLdaa~~~gI~l 111 (151)
..+..|.+||||-.+|.+.|+.+
T Consensus 62 ~~~y~V~~GDTL~~IA~~~~~~~ 84 (167)
T 2l9y_A 62 TATVTVQQGDTLRDIGRRFDCDF 84 (167)
T ss_dssp CEEEEECTTCCHHHHHHHTTCCH
T ss_pred CceEEECCCCcHHHHHHHcCCCH
Confidence 36788999999999999988643
No 144
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=20.52 E-value=1.6e+02 Score=18.26 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC
Q 031881 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE 110 (151)
Q Consensus 78 v~Vtfi~~dG~~~tv~v~~G~sLLdaa~~~gI~ 110 (151)
++|++..+.+ +.+++++++.|+.+.+...+++
T Consensus 5 m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 5 MKFTVITDDG-KKILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp EEEEEEETTE-EEEEEESSCCBHHHHHHHTTCC
T ss_pred EEEEEeCccC-ceeEECCCCCcHHHHHHHhCCC
Confidence 4777764433 3568889999999999998875
No 145
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=20.12 E-value=14 Score=27.60 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=11.7
Q ss_pred ceecccEEEEEcCCCC
Q 031881 119 LACSTCHVIVMVHYWP 134 (151)
Q Consensus 119 g~CgTChV~v~~~~l~ 134 (151)
-.||+||+....+.|+
T Consensus 22 ~~C~~CH~a~pp~~lp 37 (139)
T 2fw5_A 22 TECSACHMAYPAALLP 37 (139)
T ss_dssp HHTTSSSCCCCGGGSC
T ss_pred HHHHhccCCCCcccCC
Confidence 5688999988765444
Done!