BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031882
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 26 YTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEV-SKADYDKCRTK 83
+ VGD GW+ P S YS WA+ + F GD++ FN+ +H+V E+ +K +D C
Sbjct: 6 HIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 84 SPDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINI 125
+ D ++ TSP L+ G HYF+CTV +HC GQK++IN+
Sbjct: 65 NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 24 ETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWT-GSHSVAEVSKADYDKCRT 82
E Y VG +M W P S Y TWA+ + F GD + F++ G H VA V+K +D C+
Sbjct: 2 EDYDVGGDMEWKRP-SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK 60
Query: 83 KSPDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINI 125
++P + T P LN+ G Y+ICTV HC GQK++IN+
Sbjct: 61 ENPISHM-TTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 23 AETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWTGS-HSVAEVSKADYDKCR 81
A + VGD GWTT Y+ WAS KFH GD+++FN+ H+V +V + + C
Sbjct: 2 ATVHKVGDSTGWTT--LVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN 59
Query: 82 TKSPDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINI 125
+ SP + + + L GT YF+C + HC GQKV I +
Sbjct: 60 SSSPAAS-YTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWTGS-HSVAEVSKADYDKCRTK 83
Y VG GWT +W ++F GD ++FN+ S H+V V++ + C T
Sbjct: 2 VYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT- 54
Query: 84 SPDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTIN 124
P G TS + G YFIC HC G K+ +N
Sbjct: 55 -PAGAKVYTSGRDQIKLPKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 31 EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEI 89
+GW+ +GA S F GD +VF + G H+V V+ Y C +P G
Sbjct: 4 NIGWSFNVNGARGKS-------FRAGDVLVFKYIKGQHNVVAVNGRGYASC--SAPRGAR 54
Query: 90 HETSPANYTLNSNGTHYFICTVDSHCDRGQKVTIN 124
+S + + G +YFIC+ HC G K+ IN
Sbjct: 55 TYSSGQDRIKLTRGQNYFICSFPGHCGGGMKIAIN 89
>pdb|2AAN|A Chain A, Auracyanin A: A "blue" Copper Protein From The Green
Thermophilic Photosynthetic Bacterium,Chloroflexus
Aurantiacus
Length = 139
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 75 ADYDKCRTKSPDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQ-KVTIN 124
AD +SP +ET +T + GT+ +ICTV H Q K+ +N
Sbjct: 89 ADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYPLMQGKLVVN 139
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWTGSH 67
T V +E+ W T P G K++ +F D FN+ G H
Sbjct: 133 TVCVNNELNWQTIPPGXVITDENGKKKQSYFHD--FFNYAGIH 173
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWTGSH 67
T V +E+ W T P G K++ +F D FN+ G H
Sbjct: 133 TVCVNNELNWQTIPPGXVITDENGKKKQSYFHD--FFNYAGIH 173
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 93 SPANYTLNSNGTHYFICTVDSH 114
S AN N+NG+ +F+CTV +
Sbjct: 106 SMANAGPNTNGSQFFLCTVKTE 127
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 93 SPANYTLNSNGTHYFICTVDS 113
S AN N+NG+ +FICT+ +
Sbjct: 100 SMANAGPNTNGSQFFICTIKT 120
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 93 SPANYTLNSNGTHYFICTVDS 113
S AN N+NG+ +FICT+ +
Sbjct: 99 SMANAGPNTNGSQFFICTIKT 119
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 93 SPANYTLNSNGTHYFICTVDS 113
S AN N+NG+ +FICT+ +
Sbjct: 98 SMANAGPNTNGSQFFICTIKT 118
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 93 SPANYTLNSNGTHYFICTVDS 113
S AN N+NG+ +FICT+ +
Sbjct: 99 SMANAGPNTNGSQFFICTIKT 119
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 93 SPANYTLNSNGTHYFICTVDSHCDRGQKVTI 123
S AN N+NG+ +FICT + G+ V
Sbjct: 98 SXANAGPNTNGSQFFICTAKTEWLDGKHVVF 128
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 93 SPANYTLNSNGTHYFICTVDSHCDRGQKVTI 123
S AN N+NG+ +FICT + G+ V
Sbjct: 107 SMANAGPNTNGSQFFICTAKTEWLDGKHVVF 137
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWTGSHS 68
T V +E+ W T P G K++ +F D FN+ G H
Sbjct: 133 TVCVNNELNWQTIPPGMVITDENGKKKQSYFHD--FFNYAGIHR 174
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 93 SPANYTLNSNGTHYFICTVDSHCDRGQKVTI 123
S AN N+NG+ +FICT + G+ V
Sbjct: 99 SMANAGPNTNGSQFFICTAKTEWLDGKHVVF 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,397,888
Number of Sequences: 62578
Number of extensions: 182555
Number of successful extensions: 456
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 33
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)