Query 031882
Match_columns 151
No_of_seqs 121 out of 889
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.1E-43 2.5E-48 275.6 12.2 118 9-132 6-124 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 5.9E-33 1.3E-37 194.4 5.1 84 34-119 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.7 1.9E-07 4.1E-12 68.6 11.1 70 49-126 47-119 (119)
4 PF00127 Copper-bind: Copper b 98.6 1.9E-07 4.1E-12 66.2 7.3 76 49-126 17-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.5 1.3E-06 2.7E-11 62.1 9.1 89 25-126 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.4 2.3E-06 4.9E-11 63.1 9.2 88 21-126 21-115 (115)
7 TIGR02375 pseudoazurin pseudoa 98.4 2.7E-06 5.8E-11 62.8 8.6 76 49-130 15-91 (116)
8 COG3794 PetE Plastocyanin [Ene 98.3 7.7E-06 1.7E-10 61.5 9.6 81 28-127 43-128 (128)
9 TIGR02657 amicyanin amicyanin. 98.0 4.4E-05 9.5E-10 52.5 7.5 70 49-126 11-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.3 0.0016 3.4E-08 49.9 7.7 72 51-126 54-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.6 0.013 2.9E-07 46.9 8.0 79 53-131 90-191 (196)
12 PF13473 Cupredoxin_1: Cupredo 96.4 0.0022 4.8E-08 45.4 2.2 63 49-125 35-104 (104)
13 KOG3858 Ephrin, ligand for Eph 96.4 0.024 5.3E-07 46.6 8.5 106 15-130 15-164 (233)
14 TIGR03094 sulfo_cyanin sulfocy 94.9 0.032 7E-07 44.5 3.7 31 100-130 159-189 (195)
15 COG4454 Uncharacterized copper 94.9 0.052 1.1E-06 42.2 4.7 78 49-127 63-158 (158)
16 TIGR03096 nitroso_cyanin nitro 94.6 0.074 1.6E-06 40.4 4.8 55 48-112 60-121 (135)
17 PF00812 Ephrin: Ephrin; Inte 94.3 0.14 3.1E-06 39.2 6.0 76 51-126 24-144 (145)
18 TIGR02695 azurin azurin. Azuri 93.9 0.26 5.7E-06 37.0 6.4 33 91-124 86-124 (125)
19 TIGR02376 Cu_nitrite_red nitri 90.5 1.2 2.5E-05 37.8 7.1 75 51-129 61-148 (311)
20 PRK02888 nitrous-oxide reducta 88.2 1.1 2.3E-05 41.9 5.6 66 50-127 556-634 (635)
21 PF07172 GRP: Glycine rich pro 86.6 0.51 1.1E-05 33.7 2.0 26 1-26 1-28 (95)
22 PF07732 Cu-oxidase_3: Multico 86.3 0.59 1.3E-05 34.0 2.3 78 50-128 27-116 (117)
23 PRK10378 inactive ferrous ion 83.6 15 0.00032 32.4 10.0 29 95-128 90-118 (375)
24 PLN02354 copper ion binding / 79.7 16 0.00035 33.5 9.3 78 51-129 60-148 (552)
25 PF00116 COX2: Cytochrome C ox 78.1 4.6 0.0001 29.5 4.4 65 49-125 46-119 (120)
26 PF02839 CBM_5_12: Carbohydrat 76.8 1.5 3.2E-05 25.8 1.2 25 44-72 1-25 (41)
27 TIGR02866 CoxB cytochrome c ox 75.2 9 0.0002 30.2 5.7 67 50-128 118-193 (201)
28 TIGR03388 ascorbase L-ascorbat 74.8 9.5 0.0002 34.7 6.4 34 96-129 90-123 (541)
29 PLN02835 oxidoreductase 74.3 28 0.00061 31.8 9.3 76 51-129 62-150 (539)
30 PLN02604 oxidoreductase 73.2 25 0.00053 32.3 8.7 34 96-129 113-146 (566)
31 MTH00047 COX2 cytochrome c oxi 70.3 7.2 0.00016 31.1 4.0 33 96-130 159-194 (194)
32 PLN00044 multi-copper oxidase- 63.9 23 0.00049 33.0 6.5 79 51-130 62-151 (596)
33 COG1622 CyoA Heme/copper-type 63.6 8.2 0.00018 32.0 3.2 33 95-129 179-214 (247)
34 TIGR01480 copper_res_A copper- 57.8 26 0.00056 32.5 5.7 84 34-125 488-586 (587)
35 PLN02191 L-ascorbate oxidase 56.7 37 0.0008 31.3 6.5 34 96-129 112-145 (574)
36 TIGR02228 sigpep_I_arch signal 55.2 37 0.0008 26.0 5.4 23 50-72 58-85 (158)
37 PLN02168 copper ion binding / 55.1 48 0.001 30.4 7.0 79 51-130 59-148 (545)
38 PF12195 End_beta_barrel: Beta 52.8 7.5 0.00016 26.9 1.1 28 50-77 25-59 (83)
39 cd06555 ASCH_PF0470_like ASC-1 51.2 16 0.00034 26.7 2.6 29 51-79 30-61 (109)
40 PF08980 DUF1883: Domain of un 49.1 3.8 8.1E-05 29.3 -0.9 74 51-126 9-86 (94)
41 TIGR03389 laccase laccase, pla 49.0 68 0.0015 29.1 6.9 75 51-130 36-125 (539)
42 PF12961 DUF3850: Domain of Un 47.5 11 0.00025 25.6 1.3 14 49-62 25-38 (72)
43 TIGR01480 copper_res_A copper- 46.4 61 0.0013 30.1 6.2 34 96-129 131-164 (587)
44 PLN02792 oxidoreductase 46.4 76 0.0017 29.1 6.8 78 51-129 49-137 (536)
45 PF15020 CATSPERD: Cation chan 42.1 64 0.0014 30.9 5.7 89 45-144 592-697 (733)
46 PF10731 Anophelin: Thrombin i 41.7 22 0.00047 23.6 1.9 30 1-31 1-30 (65)
47 smart00495 ChtBD3 Chitin-bindi 40.9 17 0.00037 21.1 1.2 18 44-61 1-18 (41)
48 MTH00140 COX2 cytochrome c oxi 40.3 45 0.00097 27.0 4.0 31 96-128 183-216 (228)
49 PLN02991 oxidoreductase 40.3 1.1E+02 0.0023 28.2 6.8 79 51-130 61-150 (543)
50 PF06462 Hyd_WA: Propeller; I 38.3 67 0.0015 18.0 3.4 25 96-120 3-27 (32)
51 PF02362 B3: B3 DNA binding do 37.1 11 0.00024 25.5 0.0 16 48-63 69-84 (100)
52 PTZ00459 mucin-associated surf 34.8 27 0.00058 29.5 1.9 16 1-16 1-18 (291)
53 KOG3416 Predicted nucleic acid 33.8 44 0.00094 25.3 2.7 32 25-63 40-72 (134)
54 MTH00154 COX2 cytochrome c oxi 33.5 68 0.0015 26.0 4.0 30 96-127 183-215 (227)
55 PTZ00047 cytochrome c oxidase 32.6 72 0.0016 25.0 3.8 30 96-127 116-148 (162)
56 PF05382 Amidase_5: Bacterioph 32.4 1.2E+02 0.0025 23.2 4.9 35 51-85 74-114 (145)
57 MTH00139 COX2 cytochrome c oxi 31.8 49 0.0011 26.7 2.9 31 96-128 183-216 (226)
58 MTH00129 COX2 cytochrome c oxi 31.3 66 0.0014 26.1 3.6 30 96-127 183-215 (230)
59 MTH00168 COX2 cytochrome c oxi 31.1 75 0.0016 25.7 3.9 31 96-128 183-216 (225)
60 PF09792 But2: Ubiquitin 3 bin 30.5 71 0.0015 24.1 3.4 32 96-130 100-131 (143)
61 TIGR01433 CyoA cytochrome o ub 29.7 82 0.0018 25.5 3.9 31 96-128 182-215 (226)
62 MTH00098 COX2 cytochrome c oxi 29.3 82 0.0018 25.6 3.8 31 96-128 183-216 (227)
63 MTH00117 COX2 cytochrome c oxi 28.9 93 0.002 25.2 4.1 31 96-128 183-216 (227)
64 PLN02792 oxidoreductase 28.6 81 0.0017 28.9 4.0 77 52-128 406-506 (536)
65 KOG1263 Multicopper oxidases [ 28.2 2.7E+02 0.0058 25.9 7.3 81 51-132 61-152 (563)
66 COG1430 Uncharacterized conser 27.7 34 0.00074 25.6 1.2 18 46-63 104-121 (126)
67 COG4043 Preprotein translocase 27.6 26 0.00057 25.6 0.6 15 49-63 30-44 (111)
68 TIGR01432 QOXA cytochrome aa3 27.6 81 0.0018 25.2 3.5 32 95-128 172-206 (217)
69 MTH00038 COX2 cytochrome c oxi 27.5 98 0.0021 25.1 4.0 31 96-128 183-216 (229)
70 PF14326 DUF4384: Domain of un 27.4 50 0.0011 22.1 2.0 14 52-65 2-16 (83)
71 PF11604 CusF_Ec: Copper bindi 27.2 47 0.001 21.9 1.8 16 48-63 38-53 (70)
72 PF07731 Cu-oxidase_2: Multico 27.1 30 0.00065 24.7 0.9 32 96-127 105-136 (138)
73 COG5569 Uncharacterized conser 26.9 50 0.0011 24.1 1.9 23 50-72 81-106 (108)
74 cd00645 AsnA Asparagine synthe 26.2 77 0.0017 27.3 3.2 34 23-63 186-224 (309)
75 COG3627 PhnJ Uncharacterized e 26.0 42 0.00091 27.8 1.6 25 95-119 257-281 (291)
76 PTZ00213 asparagine synthetase 26.0 82 0.0018 27.6 3.4 27 22-50 196-227 (348)
77 PF08194 DIM: DIM protein; In 25.9 1.2E+02 0.0026 17.9 3.1 22 8-29 8-30 (36)
78 TIGR03511 GldH_lipo gliding mo 25.5 3.1E+02 0.0068 21.0 6.4 27 11-37 11-41 (156)
79 MTH00023 COX2 cytochrome c oxi 25.2 1.1E+02 0.0023 25.1 3.8 31 96-128 194-227 (240)
80 PF10377 ATG11: Autophagy-rela 25.0 47 0.001 24.7 1.6 17 51-67 41-58 (129)
81 PF01345 DUF11: Domain of unkn 24.9 53 0.0012 21.3 1.7 22 42-63 26-47 (76)
82 PF03590 AsnA: Aspartate-ammon 22.9 1E+02 0.0022 25.7 3.3 39 22-62 191-238 (244)
83 TIGR01451 B_ant_repeat conserv 22.7 57 0.0012 20.2 1.4 15 49-63 4-18 (53)
84 MTH00008 COX2 cytochrome c oxi 22.6 1.3E+02 0.0027 24.5 3.8 31 96-128 183-216 (228)
85 cd05810 CBM20_alpha_MTH Glucan 22.6 80 0.0017 21.9 2.3 39 25-63 18-62 (97)
86 PF02933 CDC48_2: Cell divisio 22.5 67 0.0014 20.4 1.8 15 49-63 15-29 (64)
87 PRK09723 putative fimbrial-lik 22.3 5.8E+02 0.013 23.0 10.9 14 20-33 24-37 (421)
88 PF04014 Antitoxin-MazE: Antid 22.3 31 0.00068 20.7 0.1 36 27-69 2-37 (47)
89 MTH00076 COX2 cytochrome c oxi 21.6 1.3E+02 0.0028 24.4 3.7 31 96-128 183-216 (228)
90 PRK09495 glnH glutamine ABC tr 21.5 1.2E+02 0.0026 23.5 3.4 29 7-35 8-36 (247)
91 PF15240 Pro-rich: Proline-ric 21.5 60 0.0013 25.8 1.6 13 8-20 4-16 (179)
92 cd05808 CBM20_alpha_amylase Al 21.3 84 0.0018 21.1 2.2 39 25-63 17-61 (95)
93 PF14801 GCD14_N: tRNA methylt 21.1 59 0.0013 21.0 1.2 28 50-77 3-32 (54)
94 PRK11528 hypothetical protein; 21.1 1.5E+02 0.0032 24.6 3.9 37 32-71 26-70 (254)
95 MTH00051 COX2 cytochrome c oxi 21.1 1.3E+02 0.0028 24.5 3.5 31 96-128 187-220 (234)
96 PF09953 DUF2187: Uncharacteri 20.7 91 0.002 20.3 2.1 13 51-63 2-14 (57)
97 COG4446 Uncharacterized protei 20.7 83 0.0018 23.8 2.1 25 49-73 88-112 (141)
98 PRK05425 asparagine synthetase 20.5 1.1E+02 0.0025 26.5 3.2 35 22-63 195-234 (327)
99 PF00394 Cu-oxidase: Multicopp 20.4 1.3E+02 0.0029 22.3 3.3 76 50-126 61-156 (159)
100 PF11766 Candida_ALS_N: Cell-w 20.4 33 0.00072 28.5 -0.0 34 50-83 6-47 (249)
101 PF02989 DUF228: Lyme disease 20.3 56 0.0012 26.1 1.2 22 42-63 116-139 (184)
102 TIGR03390 ascorbOXfungal L-asc 20.2 99 0.0021 28.2 3.0 34 96-129 502-535 (538)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=275.64 Aligned_cols=118 Identities=30% Similarity=0.483 Sum_probs=105.9
Q ss_pred HHHHHHHHhhcccceeEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCC
Q 031882 9 GFLVVVPAIFDAAAAETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDG 87 (151)
Q Consensus 9 ~~~~~~~~l~~~a~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~ 87 (151)
+++++++++...++|++|+|||+.||+.+ .+|++|+++|+|++||+|+|+| +++|||+||++++|++|+.++|+
T Consensus 6 l~~~~~~~~~~~~~a~~~~VGd~~GW~~~----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi- 80 (167)
T PLN03148 6 LFCFFALFSASATTATDHIVGANKGWNPG----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAA- 80 (167)
T ss_pred HHHHHHHHhhhhccceEEEeCCCCCcCCC----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCc-
Confidence 33333445567889999999999999955 7899999999999999999999 99999999999999999999999
Q ss_pred ccccCCCcEEEeccCceEEEEeCCCCCCCCCCeEEEEecCCCCCC
Q 031882 88 EIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEHSSA 132 (151)
Q Consensus 88 ~~~~~G~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s~~ 132 (151)
..+++|++.|+|+++|++||||+ .+||+.||||+|+|.+.+++|
T Consensus 81 ~~~tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~~pp 124 (167)
T PLN03148 81 GNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHPLPPPP 124 (167)
T ss_pred ceecCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcCCCCCC
Confidence 89999999999999999999999 699999999999998765433
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=5.9e-33 Score=194.35 Aligned_cols=84 Identities=51% Similarity=0.990 Sum_probs=69.6
Q ss_pred CCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCCCcEEEeccCceEEEEeCCC
Q 031882 34 WTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETSPANYTLNSNGTHYFICTVD 112 (151)
Q Consensus 34 W~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~~v~l~~~G~~YFiC~v~ 112 (151)
|+++++ ..+|++||++++|++||+|+|+| +++|+|+||++++|++|+.++|+ ..+++|++.|+|+++|++||||+++
T Consensus 1 W~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G~~~v~L~~~G~~YFic~~~ 78 (85)
T PF02298_consen 1 WTIPTN-ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPI-STYSTGNDTVTLTKPGPHYFICGVP 78 (85)
T ss_dssp SSSSSS-TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTS-EEE-SSEEEEEE-SSEEEEEE--ST
T ss_pred CccCCC-ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCce-ecccCCCEEEEeCCCcCeEEEeCCC
Confidence 777742 36999999999999999999999 89999999999999999999999 8899999999999999999999999
Q ss_pred CCCCCCC
Q 031882 113 SHCDRGQ 119 (151)
Q Consensus 113 ~HC~~Gm 119 (151)
+||+.||
T Consensus 79 ~HC~~Gq 85 (85)
T PF02298_consen 79 GHCQKGQ 85 (85)
T ss_dssp TTTTTT-
T ss_pred CcccccC
Confidence 9999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.75 E-value=1.9e-07 Score=68.64 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=49.8
Q ss_pred cCCeeEeCcEEEEee--cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCceEEEEeCCCCCCCCCCeEEEEe
Q 031882 49 SKQKFHFGDTIVFNW--TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGTHYFICTVDSHCDRGQKVTINI 125 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V 125 (151)
+..++++||+|.|.. ...||+.--.. +....++ .....| ..+++++.+|.|-|+|. .|=..|||..|+|
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~---~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD---LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc---cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEE
Confidence 467999999999988 57899853111 1111111 112334 36899999999999999 6888899999998
Q ss_pred c
Q 031882 126 G 126 (151)
Q Consensus 126 ~ 126 (151)
+
T Consensus 119 ~ 119 (119)
T PRK02710 119 E 119 (119)
T ss_pred C
Confidence 4
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.61 E-value=1.9e-07 Score=66.22 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=53.8
Q ss_pred cCCeeEeCcEEEEee--cCCCeeEEEcccc--cCcCcCCCCC--CccccCCC-cEEEeccCceEEEEeCCCCCCCCCCeE
Q 031882 49 SKQKFHFGDTIVFNW--TGSHSVAEVSKAD--YDKCRTKSPD--GEIHETSP-ANYTLNSNGTHYFICTVDSHCDRGQKV 121 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~--y~~C~~~~~~--~~~~~~G~-~~v~l~~~G~~YFiC~v~~HC~~GmKl 121 (151)
+..++++||+|.|.+ ...||+...+... -...+...+. ......|. ..++++++|.|.|+|. + |...||+-
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 457999999999999 7789998875211 1112111110 01223443 5788999999999999 8 99999999
Q ss_pred EEEec
Q 031882 122 TINIG 126 (151)
Q Consensus 122 ~I~V~ 126 (151)
.|.|+
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99985
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.50 E-value=1.3e-06 Score=62.11 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=58.5
Q ss_pred EEEecC-CCCCCCCCCCCCCccccccCCeeEeCcEEEEee--cCCCeeEEEcccccC-----cCcCCCCCCccccCCC-c
Q 031882 25 TYTVGD-EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW--TGSHSVAEVSKADYD-----KCRTKSPDGEIHETSP-A 95 (151)
Q Consensus 25 ~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~-----~C~~~~~~~~~~~~G~-~ 95 (151)
+..+|. +.+-.+.| +..++++||+|+|+. ...|++...+...-+ ......-. .....|. .
T Consensus 2 ~v~~g~~~g~~~F~P----------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pG~t~ 70 (99)
T TIGR02656 2 TVKMGADKGALVFEP----------AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKD-LLNSPGESY 70 (99)
T ss_pred EEEEecCCCceeEeC----------CEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccc-cccCCCCEE
Confidence 345664 33456664 467999999999998 578999754321000 00110000 1122343 5
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.++++.+|+|-|.|. +|+..||+..|.|.
T Consensus 71 ~~tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 71 EVTFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 789999999999999 89999999999984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.43 E-value=2.3e-06 Score=63.14 Aligned_cols=88 Identities=25% Similarity=0.452 Sum_probs=60.6
Q ss_pred cceeEEEecC---CCCCCCCCCCCCCccccccCCeeEeCcEEEEee-c--CCCeeEEEcccccCcCcCCCCCCccccCC-
Q 031882 21 AAAETYTVGD---EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T--GSHSVAEVSKADYDKCRTKSPDGEIHETS- 93 (151)
Q Consensus 21 a~a~~~~VGg---~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~--~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G- 93 (151)
+...+..||. +.+..|.| +..++++||+|+|++ . ..|+|.-.....|+. .. .....|
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~--~~~~~G~ 84 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDP----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE--RVSEEGT 84 (115)
T ss_pred CceEEEEecccCCCCceeEeC----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc--cccCCCC
Confidence 3456778882 22466665 457999999999998 3 579997433233431 11 112233
Q ss_pred CcEEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 94 PANYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 94 ~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
..+++|+++|.|-|+|.. |=..|||-.|.|.
T Consensus 85 t~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 85 TYEHTFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 578999999999999994 5556999999984
No 7
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.38 E-value=2.7e-06 Score=62.81 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=54.2
Q ss_pred cCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCCCcEEEeccCceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 49 SKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
+..++++||+|+|.+ ...|+|........+. .++. ..-.+...+++++++|.|-|.|. .|=..||+..|+|..
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~-~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAF-KSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccc-cCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 457999999999999 7789997643211111 1111 11113336899999999999999 688999999999988
Q ss_pred CCC
Q 031882 128 EHS 130 (151)
Q Consensus 128 ~~s 130 (151)
+++
T Consensus 89 ~~~ 91 (116)
T TIGR02375 89 PPA 91 (116)
T ss_pred CCc
Confidence 654
No 8
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.30 E-value=7.7e-06 Score=61.47 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=57.3
Q ss_pred ecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cC-CCeeEEEcccccCcCcCCCCCCccccCC---CcEEEeccC
Q 031882 28 VGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TG-SHSVAEVSKADYDKCRTKSPDGEIHETS---PANYTLNSN 102 (151)
Q Consensus 28 VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~-~H~V~~Vs~~~y~~C~~~~~~~~~~~~G---~~~v~l~~~ 102 (151)
+++...-.|.| +..++++||++.|.+ .. .|||.-.... ++-. . .....+ ..+.+++.+
T Consensus 43 ~~~~~~~vF~P----------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~~g-~-~~~~~~~~~s~~~Tfe~~ 105 (128)
T COG3794 43 GVDIGAMVFEP----------AEVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DPEG-S-GTLKAGINESFTHTFETP 105 (128)
T ss_pred eccCcceeEcC----------cEEEECCCCEEEEEECCCCCceEEEeCCC-----Cccc-c-cccccCCCcceEEEeccc
Confidence 34444566665 567999999999999 55 8999876433 1111 1 112222 358899999
Q ss_pred ceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 103 GTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 103 G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
|.|.|+|.. |=..|||-.|.|.+
T Consensus 106 G~Y~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 106 GEYTYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred ceEEEEecc--CCCCCcEEEEEeCC
Confidence 999999995 66779999999863
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.98 E-value=4.4e-05 Score=52.46 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred cCCeeEeCcEEEEee--cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCceEEEEeCCCCCCCCCCeEEEEe
Q 031882 49 SKQKFHFGDTIVFNW--TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGTHYFICTVDSHCDRGQKVTINI 125 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V 125 (151)
+..++++||+|.|++ ...|||...+... ..=+...+ ....| ..++++++||+|-|.|..+ ..||-.|.|
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~---~~~~g~~~~~tf~~~G~y~y~C~~H----p~M~G~v~V 82 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP---MMKKEQAYSLTFTEAGTYDYHCTPH----PFMRGKVVV 82 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc---ccCCCCEEEEECCCCEEEEEEcCCC----CCCeEEEEE
Confidence 346899999999999 4589997544221 11011111 12233 3689999999999999997 469999988
Q ss_pred c
Q 031882 126 G 126 (151)
Q Consensus 126 ~ 126 (151)
+
T Consensus 83 ~ 83 (83)
T TIGR02657 83 E 83 (83)
T ss_pred C
Confidence 4
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.27 E-value=0.0016 Score=49.85 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=48.4
Q ss_pred CeeEeCcEEEEee-cC----CCeeEEEccc-ccC------------cCcCCCCCCccccCC-----CcEEEeccCceEEE
Q 031882 51 QKFHFGDTIVFNW-TG----SHSVAEVSKA-DYD------------KCRTKSPDGEIHETS-----PANYTLNSNGTHYF 107 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~----~H~V~~Vs~~-~y~------------~C~~~~~~~~~~~~G-----~~~v~l~~~G~~YF 107 (151)
.+++.||+++|.. +. .|+....+.. .+. .|....+ ..+| +.+++++++|+|||
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~----~~~g~~~~~~~tf~f~~aGtywy 129 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP----PKSGKFGYTDFTYHFSTAGTYWY 129 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC----CCCCccceeEEEEECCCCeEEEE
Confidence 4678999999999 43 5776654321 110 1211111 1122 34677889999999
Q ss_pred EeCCCCCCCCCCeEEEEec
Q 031882 108 ICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 108 iC~v~~HC~~GmKl~I~V~ 126 (151)
.|.+++|=+.||+-.|.|.
T Consensus 130 hC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 130 LCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EcCChhHHHCCCEEEEEEC
Confidence 9999999999999988874
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.59 E-value=0.013 Score=46.94 Aligned_cols=79 Identities=10% Similarity=0.175 Sum_probs=49.3
Q ss_pred eEeCcEEEEee-c---CCCeeEEE-cccccCcCcCC---CCC----C----c----cccCCCc-EEEe-c-cCceEEEEe
Q 031882 53 FHFGDTIVFNW-T---GSHSVAEV-SKADYDKCRTK---SPD----G----E----IHETSPA-NYTL-N-SNGTHYFIC 109 (151)
Q Consensus 53 f~vGD~L~F~~-~---~~H~V~~V-s~~~y~~C~~~---~~~----~----~----~~~~G~~-~v~l-~-~~G~~YFiC 109 (151)
+-.|-++.|+| + -.|++..| +......+..- +.+ + . -...|.. ...+ + .+|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 44788888888 3 37999888 33333334211 111 0 0 0112322 2122 2 589999999
Q ss_pred CCCCCCCCCCeEEEEecCCCCC
Q 031882 110 TVDSHCDRGQKVTINIGGEHSS 131 (151)
Q Consensus 110 ~v~~HC~~GmKl~I~V~~~~s~ 131 (151)
++++|=+.||-..+.|.+.-..
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred cCCChhhcCCEEEEEEecCccc
Confidence 9999999999999998876543
No 12
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.40 E-value=0.0022 Score=45.41 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=30.3
Q ss_pred cCCeeEeCc--EEEEee--cCCCeeEEEcccccCcCcCCCCCCccccCCC-cEEEe--ccCceEEEEeCCCCCCCCCCeE
Q 031882 49 SKQKFHFGD--TIVFNW--TGSHSVAEVSKADYDKCRTKSPDGEIHETSP-ANYTL--NSNGTHYFICTVDSHCDRGQKV 121 (151)
Q Consensus 49 ~~~tf~vGD--~L~F~~--~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~-~~v~l--~~~G~~YFiC~v~~HC~~GmKl 121 (151)
+..+++.|+ +|+|+. ...|++.. .+- +.. .....|. .++++ +++|.|=|.|+.+.+ ||-
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~--------~~~-~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G 100 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDL--------GIS-KVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKG 100 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GGG--------TEE-EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CCC--------ceE-EEECCCCEEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence 357999999 555555 35576643 221 100 1223343 45555 899999999998763 776
Q ss_pred EEEe
Q 031882 122 TINI 125 (151)
Q Consensus 122 ~I~V 125 (151)
.|+|
T Consensus 101 ~liV 104 (104)
T PF13473_consen 101 TLIV 104 (104)
T ss_dssp ----
T ss_pred cccC
Confidence 6654
No 13
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.38 E-value=0.024 Score=46.59 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=59.2
Q ss_pred HHhhccccee-EEEecCCCCCCCCCC--CCCCccccccCCeeEeCcEEEEee----c-CC-----CeeEEEcccccCcCc
Q 031882 15 PAIFDAAAAE-TYTVGDEMGWTTPPS--GAAAYSTWASKQKFHFGDTIVFNW----T-GS-----HSVAEVSKADYDKCR 81 (151)
Q Consensus 15 ~~l~~~a~a~-~~~VGg~~GW~~~~~--~~~~Y~~Wa~~~tf~vGD~L~F~~----~-~~-----H~V~~Vs~~~y~~C~ 81 (151)
+.....++++ .|.| -|....+ ...+| ..-.++||.|-+.= . +. .-++.|++++|+.|+
T Consensus 15 l~~~~~~~~~~~~~V----yWNSSNp~F~~~d~-----vI~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~ 85 (233)
T KOG3858|consen 15 LCPLGLAAGKNLHPV----YWNSSNPRFRRGDY-----VIYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCE 85 (233)
T ss_pred hcccccCccccccce----EecCCCcceecCCc-----eEEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhh
Confidence 3344455555 5766 6886533 12222 23466789987753 1 11 235889999999999
Q ss_pred C-CCCCC-----------------ccccCCCcEEEeccCc-eEEEEeCC-----------CCCCCC-CCeEEEEecCCCC
Q 031882 82 T-KSPDG-----------------EIHETSPANYTLNSNG-THYFICTV-----------DSHCDR-GQKVTINIGGEHS 130 (151)
Q Consensus 82 ~-~~~~~-----------------~~~~~G~~~v~l~~~G-~~YFiC~v-----------~~HC~~-GmKl~I~V~~~~s 130 (151)
. +.+-. +.++.-+.-..+. || .||||++- ++-|.. .||+.+.|...+.
T Consensus 86 ~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~-pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 86 LRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQ-PGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred ccCCCcEEEEecCCCcchhhhhhheecCCCCCCcccc-CCCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 6 33220 1222222233344 56 48888752 234544 5898888876443
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.90 E-value=0.032 Score=44.50 Aligned_cols=31 Identities=16% Similarity=0.493 Sum_probs=26.7
Q ss_pred ccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 100 NSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 100 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
..+|.||++|+++||-+.||-..+.|.+.-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3789999999999999999988888876543
No 15
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.052 Score=42.18 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=50.0
Q ss_pred cCCeeEeCcEEEEee-cC---CCeeEEEcccc-----cCc--------CcCCCCC-CccccCCCcEEEeccCceEEEEeC
Q 031882 49 SKQKFHFGDTIVFNW-TG---SHSVAEVSKAD-----YDK--------CRTKSPD-GEIHETSPANYTLNSNGTHYFICT 110 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~---~H~V~~Vs~~~-----y~~--------C~~~~~~-~~~~~~G~~~v~l~~~G~~YFiC~ 110 (151)
+..+++.|.+++|.- .. .|....- +.+ +.. -+..+.+ ..+..+|..++.++++|.|=|+|.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 456889999998877 33 3444321 111 100 0111111 022234445788999999999999
Q ss_pred CCCCCCCCCeEEEEecC
Q 031882 111 VDSHCDRGQKVTINIGG 127 (151)
Q Consensus 111 v~~HC~~GmKl~I~V~~ 127 (151)
+|+|=+.||...|+|.+
T Consensus 142 iPGHy~AGM~g~itV~p 158 (158)
T COG4454 142 IPGHYEAGMVGEITVSP 158 (158)
T ss_pred CCCcccCCcEEEEEeCC
Confidence 99999999999999864
No 16
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=94.60 E-value=0.074 Score=40.38 Aligned_cols=55 Identities=11% Similarity=0.222 Sum_probs=34.4
Q ss_pred ccCCeeEeCcEEEEee-c---CCCeeEEEcccccCcCcCCCCCCccccCCCc---EEEeccCceEEEEeCCC
Q 031882 48 ASKQKFHFGDTIVFNW-T---GSHSVAEVSKADYDKCRTKSPDGEIHETSPA---NYTLNSNGTHYFICTVD 112 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~-~---~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G~~YFiC~v~ 112 (151)
.+..+++.||.+++++ + -.|++.. .+|. .+ .....|.. +++.++||+|.|.|+.+
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is----~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS----EVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc----eEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 3456899999998877 3 2465432 1121 11 22233432 56679999999999974
No 17
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=94.32 E-value=0.14 Score=39.15 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=44.3
Q ss_pred CeeEeCcEEEEee-c---C--------CCeeEEEcccccCcCcCC-CCC-----Ccccc-CCCcEEEe--c---------
Q 031882 51 QKFHFGDTIVFNW-T---G--------SHSVAEVSKADYDKCRTK-SPD-----GEIHE-TSPANYTL--N--------- 100 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~---~--------~H~V~~Vs~~~y~~C~~~-~~~-----~~~~~-~G~~~v~l--~--------- 100 (151)
..++.||.|.+.= . . ...+++|++++|+.|+.. .+. ..+.. .|+.++++ .
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 3677899999865 1 1 345899999999999963 221 01122 23433332 1
Q ss_pred --cCce-EEEEeCCC-----------CCCCC-CCeEEEEec
Q 031882 101 --SNGT-HYFICTVD-----------SHCDR-GQKVTINIG 126 (151)
Q Consensus 101 --~~G~-~YFiC~v~-----------~HC~~-GmKl~I~V~ 126 (151)
+||. ||||++-. |-|.. .|||.+.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 2564 88888532 22654 588888874
No 18
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.87 E-value=0.26 Score=36.97 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=24.2
Q ss_pred cCCC-cEEEec----cCce-EEEEeCCCCCCCCCCeEEEE
Q 031882 91 ETSP-ANYTLN----SNGT-HYFICTVDSHCDRGQKVTIN 124 (151)
Q Consensus 91 ~~G~-~~v~l~----~~G~-~YFiC~v~~HC~~GmKl~I~ 124 (151)
.+|. ++|+++ ++|. |-|+|++|||=. .||-.++
T Consensus 86 ggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 86 GGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3443 677775 3675 889999999986 6887764
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=90.49 E-value=1.2 Score=37.78 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=47.1
Q ss_pred CeeEeCcEEEEee-cC-----CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCC----CCCCC
Q 031882 51 QKFHFGDTIVFNW-TG-----SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVD----SHCDR 117 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~-----~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~----~HC~~ 117 (151)
.+++.||+++.++ +. .|++..=-.... +..... .....|. -.++++.+|+|||-|... .|=..
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~-~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAAL-TQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcc-eeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 5789999999888 43 466643110000 000111 1123333 256778899999999954 48888
Q ss_pred CCeEEEEecCCC
Q 031882 118 GQKVTINIGGEH 129 (151)
Q Consensus 118 GmKl~I~V~~~~ 129 (151)
||...+.|.+..
T Consensus 137 Gl~G~liV~~~~ 148 (311)
T TIGR02376 137 GMNGAIMVLPRE 148 (311)
T ss_pred CcceEEEeeccC
Confidence 999999998754
No 20
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.25 E-value=1.1 Score=41.94 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=41.6
Q ss_pred CCeeEeCcEEEEee-cC------CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCC---CCCC
Q 031882 50 KQKFHFGDTIVFNW-TG------SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVD---SHCD 116 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~------~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~---~HC~ 116 (151)
..+++.||.+.|.. +- .|....- .| + +......|. .+++.++||.|+++|+.. .|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip---~~------n-I~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H-- 623 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIP---NY------G-VNMEVAPQATASVTFTADKPGVYWYYCTWFCHALH-- 623 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeec---cc------C-ccEEEcCCceEEEEEEcCCCEEEEEECCcccccCc--
Confidence 46899999999998 41 2333221 11 1 101122333 356779999999999972 34
Q ss_pred CCCeEEEEecC
Q 031882 117 RGQKVTINIGG 127 (151)
Q Consensus 117 ~GmKl~I~V~~ 127 (151)
.+|+..|.|++
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 37998888875
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=86.63 E-value=0.51 Score=33.66 Aligned_cols=26 Identities=31% Similarity=0.215 Sum_probs=14.5
Q ss_pred CcchhHHHHHHHHH--HHhhcccceeEE
Q 031882 1 MGSKLVLFGFLVVV--PAIFDAAAAETY 26 (151)
Q Consensus 1 M~~~~~~~~~~~~~--~~l~~~a~a~~~ 26 (151)
|+|+..|||.++|+ +++++.++|++-
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 99988775554433 334444555443
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=86.29 E-value=0.59 Score=34.04 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=45.5
Q ss_pred CCeeEeCcEEEEee-cC---CCeeEE----Ecccc-cCc--CcCCCCCCccccCCCcEEEecc-CceEEEEeCCCCCCCC
Q 031882 50 KQKFHFGDTIVFNW-TG---SHSVAE----VSKAD-YDK--CRTKSPDGEIHETSPANYTLNS-NGTHYFICTVDSHCDR 117 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~---~H~V~~----Vs~~~-y~~--C~~~~~~~~~~~~G~~~v~l~~-~G~~YFiC~v~~HC~~ 117 (151)
...++.||+|..++ +. .+++.- ++... .|. .....++ ....+-.-.++++. +|++||-|-..+|=..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i-~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPI-APGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSB-STTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeE-EeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 35789999999988 32 334422 11110 111 1111222 21111123677888 9999999998885448
Q ss_pred CCeEEEEecCC
Q 031882 118 GQKVTINIGGE 128 (151)
Q Consensus 118 GmKl~I~V~~~ 128 (151)
||--.+.|.+.
T Consensus 106 GL~G~~iV~~~ 116 (117)
T PF07732_consen 106 GLYGAIIVEPP 116 (117)
T ss_dssp TEEEEEEEE-T
T ss_pred cCEEEEEEcCC
Confidence 99999988764
No 23
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=83.57 E-value=15 Score=32.41 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=21.0
Q ss_pred cEEEeccCceEEEEeCCCCCCCCCCeEEEEecCC
Q 031882 95 ANYTLNSNGTHYFICTVDSHCDRGQKVTINIGGE 128 (151)
Q Consensus 95 ~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 128 (151)
-+++| +||+|-|.|+. | ..||-.|+|...
T Consensus 90 l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 90 MTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 34556 69999999976 3 446777888754
No 24
>PLN02354 copper ion binding / oxidoreductase
Probab=79.65 E-value=16 Score=33.47 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=47.7
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCc-CcCCCCCCccccCCCcEEEe-ccCceEEEEeCCCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDK-CRTKSPDGEIHETSPANYTL-NSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~-C~~~~~~~~~~~~G~~~v~l-~~~G~~YFiC~v~~HC~~Gm 119 (151)
.+++.||+|+.+. +. -|.+.|-.....|. -...-|+ ....+=.-++++ +.+|++||=+-...+-..||
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI-~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl 138 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPI-PPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG 138 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCC-CCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence 4788999998877 33 35555432211221 0011133 221111125665 46899999998888888999
Q ss_pred eEEEEecCCC
Q 031882 120 KVTINIGGEH 129 (151)
Q Consensus 120 Kl~I~V~~~~ 129 (151)
.-.|.|.+..
T Consensus 139 ~G~lII~~~~ 148 (552)
T PLN02354 139 FGGLRVNSRL 148 (552)
T ss_pred cceEEEcCCc
Confidence 9999998654
No 25
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=78.05 E-value=4.6 Score=29.52 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=39.4
Q ss_pred cCCeeEeCcEEEEee-c--CCCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCCCCCCC---C
Q 031882 49 SKQKFHFGDTIVFNW-T--GSHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDSHCDRG---Q 119 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~--~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~G---m 119 (151)
+...+..|+.+.|+- + -.|+... .+-. +....-.|. ..++.++||.|++.|+. .|-.| |
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~---------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M 113 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-PELG---------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFM 113 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-TTCT---------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-
T ss_pred ceecccccceEeEEEEcCCccccccc-cccC---------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCC
Confidence 344678899999888 3 3455542 2111 101112333 45778999999999986 57776 8
Q ss_pred eEEEEe
Q 031882 120 KVTINI 125 (151)
Q Consensus 120 Kl~I~V 125 (151)
+..|.|
T Consensus 114 ~~~v~V 119 (120)
T PF00116_consen 114 PGKVIV 119 (120)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888876
No 26
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=76.84 E-value=1.5 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.606 Sum_probs=14.6
Q ss_pred ccccccCCeeEeCcEEEEeecCCCeeEEE
Q 031882 44 YSTWASKQKFHFGDTIVFNWTGSHSVAEV 72 (151)
Q Consensus 44 Y~~Wa~~~tf~vGD~L~F~~~~~H~V~~V 72 (151)
|..|..+++...||++.| +..+++.
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~----~g~~y~a 25 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY----NGKLYQA 25 (41)
T ss_dssp --B--TTCEE-TT-EEEE----TTEEEEE
T ss_pred CCCcCCCCEEcCCCEEEE----CCCEEEE
Confidence 568999999999999997 3455553
No 27
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=75.24 E-value=9 Score=30.23 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=41.1
Q ss_pred CCeeEeCcEEEEee-cC--CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCC---CCCCCCCCe
Q 031882 50 KQKFHFGDTIVFNW-TG--SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTV---DSHCDRGQK 120 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~--~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v---~~HC~~GmK 120 (151)
...+.+|+.++|+- +. .|+-..-+. .+....-.|. ..++.+++|.|+..|+. .+| ..|+
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~ip~~----------~~k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~ 185 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWVPEL----------GGKIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH--SLML 185 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhccccccc----------CceEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc--cCCe
Confidence 34688999999988 32 233321111 1101111333 35678999999999997 344 5699
Q ss_pred EEEEecCC
Q 031882 121 VTINIGGE 128 (151)
Q Consensus 121 l~I~V~~~ 128 (151)
+.|.|.+.
T Consensus 186 ~~v~v~~~ 193 (201)
T TIGR02866 186 FKVVVVER 193 (201)
T ss_pred EEEEEECH
Confidence 99998763
No 28
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=74.84 E-value=9.5 Score=34.69 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=30.4
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
.++++.+|++||-|-...|-..||.-.|.|.+..
T Consensus 90 ~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 90 NFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred EEEcCCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 5777899999999999899999999999998764
No 29
>PLN02835 oxidoreductase
Probab=74.32 E-value=28 Score=31.81 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=47.2
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCc-CcCCCCCCccccCCCc--EEEe-ccCceEEEEeCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDK-CRTKSPDGEIHETSPA--NYTL-NSNGTHYFICTVDSHCDR 117 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~-C~~~~~~~~~~~~G~~--~v~l-~~~G~~YFiC~v~~HC~~ 117 (151)
.+++.||+|+-+. +. -|.+.|-.....|. -...-|+ .. +++. ++++ +.+|++||=|-...+-..
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI-~P--G~sf~Y~F~~~~q~GT~WYHsH~~~q~~~ 138 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI-PP--NSNYTYKFQTKDQIGTFTYFPSTLFHKAA 138 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC-CC--CCcEEEEEEECCCCEeEEEEeCccchhcC
Confidence 4789999999887 43 25554432222222 0111233 22 2223 4555 469999999988888888
Q ss_pred CCeEEEEecCCC
Q 031882 118 GQKVTINIGGEH 129 (151)
Q Consensus 118 GmKl~I~V~~~~ 129 (151)
|+.-.+.|.+.+
T Consensus 139 Gl~G~lIV~~~~ 150 (539)
T PLN02835 139 GGFGAINVYERP 150 (539)
T ss_pred cccceeEEeCCC
Confidence 999999996543
No 30
>PLN02604 oxidoreductase
Probab=73.21 E-value=25 Score=32.27 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=29.9
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
.++++.+|++||=|-...|-..||.-.|.|.+..
T Consensus 113 ~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 113 EFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 5677899999999999899999999999998654
No 31
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=70.29 E-value=7.2 Score=31.08 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=26.5
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~~s 130 (151)
.++.+++|.++..|+. .|..| |++.|.|.++.|
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~~ 194 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVDS 194 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCCC
Confidence 4567899999999985 56654 999999987754
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=63.91 E-value=23 Score=33.01 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=48.5
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCc-CcCCCCCCccccCCCcEEEe-ccCceEEEEeCCCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDK-CRTKSPDGEIHETSPANYTL-NSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~-C~~~~~~~~~~~~G~~~v~l-~~~G~~YFiC~v~~HC~~Gm 119 (151)
.+++.||+|+.+. +. -|.+.|-.....|. --..-|+ ....+=.-++++ +.+|++||=+-...+-..|+
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI-~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl 140 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAI-PAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGG 140 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCc-CCCCcEEEEEEeCCCCceeEeeccchhhhhCcC
Confidence 3788999999886 32 35555432111121 0011133 221111235667 47999999998888888899
Q ss_pred eEEEEecCCCC
Q 031882 120 KVTINIGGEHS 130 (151)
Q Consensus 120 Kl~I~V~~~~s 130 (151)
.-.|.|.+...
T Consensus 141 ~GalII~~~~~ 151 (596)
T PLN00044 141 YGAITINNRDV 151 (596)
T ss_pred eeEEEEcCccc
Confidence 99999987653
No 33
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=63.64 E-value=8.2 Score=31.98 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=26.6
Q ss_pred cEEEeccCceEEEEeCCCCCCCCC---CeEEEEecCCC
Q 031882 95 ANYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGEH 129 (151)
Q Consensus 95 ~~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~~ 129 (151)
..++.+++|.|+.+|+. .|..| |++.|.|.+..
T Consensus 179 ~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 179 LWLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred EEEecCCCeEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 45778999999999985 56654 99999998765
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=57.81 E-value=26 Score=32.49 Aligned_cols=84 Identities=13% Similarity=0.326 Sum_probs=50.5
Q ss_pred CCCCCCCCCCccccccCCeeEeCcEEEEee-cC---CCee------EEE-ccc-ccCcCcCCCCCCccccCCC---cEEE
Q 031882 34 WTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TG---SHSV------AEV-SKA-DYDKCRTKSPDGEIHETSP---ANYT 98 (151)
Q Consensus 34 W~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~---~H~V------~~V-s~~-~y~~C~~~~~~~~~~~~G~---~~v~ 98 (151)
|+++- ..|.. ....+++.||.+++.+ +. .|.+ .++ +.. .|.. ..-+ .....|. ..+.
T Consensus 488 wtiNG---~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~---~~dT-v~V~Pg~t~~~~f~ 559 (587)
T TIGR01480 488 WSFDG---EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV---RKHT-VDVPPGGKRSFRVT 559 (587)
T ss_pred EEECC---ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc---cCCc-eeeCCCCEEEEEEE
Confidence 88772 22332 2356899999999999 43 2332 233 211 1110 0000 1112232 3566
Q ss_pred eccCceEEEEeCCCCCCCCCCeEEEEe
Q 031882 99 LNSNGTHYFICTVDSHCDRGQKVTINI 125 (151)
Q Consensus 99 l~~~G~~YFiC~v~~HC~~GmKl~I~V 125 (151)
.+.||.++|=|-+..|=..||--.+.|
T Consensus 560 ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 560 ADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 789999999999999999999877776
No 35
>PLN02191 L-ascorbate oxidase
Probab=56.74 E-value=37 Score=31.28 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=29.3
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
.++++.+|++||=|-...+-..||.-.+.|.+..
T Consensus 112 ~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 145 (574)
T PLN02191 112 KFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAK 145 (574)
T ss_pred EEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCC
Confidence 5777899999999998888899999999997543
No 36
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=55.19 E-value=37 Score=26.03 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=16.7
Q ss_pred CCeeEeCcEEEEee-cC-C---CeeEEE
Q 031882 50 KQKFHFGDTIVFNW-TG-S---HSVAEV 72 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~-~---H~V~~V 72 (151)
...++.||.++|+. .+ . |.|..+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 35789999999998 42 3 555555
No 37
>PLN02168 copper ion binding / pectinesterase
Probab=55.11 E-value=48 Score=30.43 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=48.3
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCc-CcCCCCCCccccCCCcEEEe-ccCceEEEEeCCCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDK-CRTKSPDGEIHETSPANYTL-NSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~-C~~~~~~~~~~~~G~~~v~l-~~~G~~YFiC~v~~HC~~Gm 119 (151)
.+++.||+|+.+. +. -|.+.+-.....|. -...-|+ ....+=.-++++ +.+|++||=+-...+=..|+
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI-~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI-LPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC-CCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 4889999999888 43 25555432211222 0111233 221111235677 47999999987776667799
Q ss_pred eEEEEecCCCC
Q 031882 120 KVTINIGGEHS 130 (151)
Q Consensus 120 Kl~I~V~~~~s 130 (151)
.-.+.|.+...
T Consensus 138 ~G~lII~~~~~ 148 (545)
T PLN02168 138 YGAIRIYNPEL 148 (545)
T ss_pred eeEEEEcCCcc
Confidence 99999987554
No 38
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=52.85 E-value=7.5 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCeeEeCcEEEEee-c-----CCCeeEEE-ccccc
Q 031882 50 KQKFHFGDTIVFNW-T-----GSHSVAEV-SKADY 77 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~-----~~H~V~~V-s~~~y 77 (151)
.+-..+||.+.|.. . +..+|..| ++..|
T Consensus 25 ~HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntF 59 (83)
T PF12195_consen 25 DHGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTF 59 (83)
T ss_dssp T----TT-EEEEES-SSTT--EEEEEEEEEETTEE
T ss_pred cCceeecceEEEeccccccccccEEEEEEecCCcE
Confidence 34678999999998 2 35667666 55544
No 39
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=51.24 E-value=16 Score=26.69 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=18.3
Q ss_pred CeeEeCcEEEEee-cC-CCeeEEE-cccccCc
Q 031882 51 QKFHFGDTIVFNW-TG-SHSVAEV-SKADYDK 79 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~-~H~V~~V-s~~~y~~ 79 (151)
+.|++||.|+|+- .+ +--+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 5899999999977 43 2223445 3344543
No 40
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=49.09 E-value=3.8 Score=29.33 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=17.3
Q ss_pred CeeEeCcEEEEeecCCCeeEEEcccccCc-CcCCCCC--CccccCCCcEEEeccCceEEEEeCCCCCCCCCC-eEEEEec
Q 031882 51 QKFHFGDTIVFNWTGSHSVAEVSKADYDK-CRTKSPD--GEIHETSPANYTLNSNGTHYFICTVDSHCDRGQ-KVTINIG 126 (151)
Q Consensus 51 ~tf~vGD~L~F~~~~~H~V~~Vs~~~y~~-C~~~~~~--~~~~~~G~~~v~l~~~G~~YFiC~v~~HC~~Gm-Kl~I~V~ 126 (151)
...+-||+++-+-+.+-||..++...|++ ++...-. +..+...+..++....|..|.+=.. |+..|- +..|+|.
T Consensus 9 ~~~~~Gd~V~V~ls~~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID~--~g~~~~~~~si~v~ 86 (94)
T PF08980_consen 9 GHLKRGDTVVVRLSHQANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVIDS--HGQSGEVEHSISVI 86 (94)
T ss_dssp ----TT-------SSS-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS---------
T ss_pred hccCCCCEEEEEeCCcccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEEC--CCCcEEEEEEEEec
Confidence 46788999998887788998888888865 4433311 1223344567788888877766554 555553 5566666
No 41
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=48.98 E-value=68 Score=29.12 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=44.4
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCc--CcCCCCCCccccCCC---cEEEe-ccCceEEEEeCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDK--CRTKSPDGEIHETSP---ANYTL-NSNGTHYFICTVDSHC 115 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~--C~~~~~~~~~~~~G~---~~v~l-~~~G~~YFiC~v~~HC 115 (151)
.+++.||+|+.+. +. -|.+.|......|. .-+.-|+ ..|. -++++ +.+|++||=|-... .
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI----~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~ 110 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPI----QPGQSYVYNFTITGQRGTLWWHAHISW-L 110 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCc----CCCCeEEEEEEecCCCeeEEEecCchh-h
Confidence 5889999999887 32 23333321111111 0111122 2233 35666 47899999998754 4
Q ss_pred CCCCeEEEEecCCCC
Q 031882 116 DRGQKVTINIGGEHS 130 (151)
Q Consensus 116 ~~GmKl~I~V~~~~s 130 (151)
..||.-.|.|.+..+
T Consensus 111 ~~Gl~G~lIV~~~~~ 125 (539)
T TIGR03389 111 RATVYGAIVILPKPG 125 (539)
T ss_pred hccceEEEEEcCCCC
Confidence 569999999987654
No 42
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=47.52 E-value=11 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.1
Q ss_pred cCCeeEeCcEEEEe
Q 031882 49 SKQKFHFGDTIVFN 62 (151)
Q Consensus 49 ~~~tf~vGD~L~F~ 62 (151)
++..|+|||.|.++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 35689999999864
No 43
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=46.43 E-value=61 Score=30.10 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=27.6
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
.+++..+|+|||-|-...+=..|+.-.|.|.+..
T Consensus 131 ~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~ 164 (587)
T TIGR01480 131 RFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAE 164 (587)
T ss_pred EEECCCCeeEEEecCchhHhhccceEEEEECCCc
Confidence 5677889999999987766677999888887643
No 44
>PLN02792 oxidoreductase
Probab=46.42 E-value=76 Score=29.07 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=45.9
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCc-CcCCCCCCccccCCCcEEEe-ccCceEEEEeCCCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDK-CRTKSPDGEIHETSPANYTL-NSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~-C~~~~~~~~~~~~G~~~v~l-~~~G~~YFiC~v~~HC~~Gm 119 (151)
.+++.||+|+-+. +. -|.+.|-.....|. --..-|+ ....+=.-++++ +.+|++||=+-...+-..|+
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI-~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPI-PPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCcc-CCCCcEEEEEEeCCCccceEEecCcchhhhccc
Confidence 4789999999888 43 35555432111111 0011133 221111135666 47999999998877777888
Q ss_pred eEEEEecCCC
Q 031882 120 KVTINIGGEH 129 (151)
Q Consensus 120 Kl~I~V~~~~ 129 (151)
.-.+.|.+.+
T Consensus 128 ~G~liI~~~~ 137 (536)
T PLN02792 128 YGSLRIYSLP 137 (536)
T ss_pred ccceEEeCCc
Confidence 8888776543
No 45
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=42.14 E-value=64 Score=30.95 Aligned_cols=89 Identities=21% Similarity=0.344 Sum_probs=54.0
Q ss_pred cccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCC---CC---Cccc---c-CCCcEEEe-ccCceEEEEeCC-
Q 031882 45 STWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKS---PD---GEIH---E-TSPANYTL-NSNGTHYFICTV- 111 (151)
Q Consensus 45 ~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~---~~---~~~~---~-~G~~~v~l-~~~G~~YFiC~v- 111 (151)
+.|.+-.. ..+|.+.+.| + +.|.+|-..+ |. ...| + +++..|.. .+.|.|-|-=.+
T Consensus 592 QtW~sm~~-~~~~~~~~~W~~----------eNY~~C~~~~~~~pl~~~~~~YqIln~~~~N~ii~~~~~g~YvF~~~iv 660 (733)
T PF15020_consen 592 QTWSSMIE-NKHLPLEFAWGP----------ENYVSCFSYNIGKPLGWLNQPYQILNGSNDNHIIWPQRNGIYVFRVKIV 660 (733)
T ss_pred cchHHHHh-CCCCChhhccCC----------CCcccccCCCCCCCCCCCCCCeEEccCCCcceEEcCCCCeEEEEEEEEe
Confidence 45777766 7778888777 4 4678885432 21 0222 1 22233333 567887665443
Q ss_pred ---CCCCCCCCeEEEEecCC-CCCCCchHHHHHHHHH
Q 031882 112 ---DSHCDRGQKVTINIGGE-HSSASSLAATFFTLLV 144 (151)
Q Consensus 112 ---~~HC~~GmKl~I~V~~~-~s~~~~~~~~~~~~~~ 144 (151)
-+.|..--.++|.|-.+ |.+-..+.+++.+++.
T Consensus 661 DP~YSyC~L~t~Fai~v~G~~P~~~~~~~~~~l~~~~ 697 (733)
T PF15020_consen 661 DPYYSYCNLTTIFAIYVYGAIPRPSVYPVATILLLLM 697 (733)
T ss_pred CCCCCccceEEEEEEEEeccCCccccchHHHHHHHHH
Confidence 47999999999999877 4455555666555443
No 46
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=41.70 E-value=22 Score=23.58 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=16.9
Q ss_pred CcchhHHHHHHHHHHHhhcccceeEEEecCC
Q 031882 1 MGSKLVLFGFLVVVPAIFDAAAAETYTVGDE 31 (151)
Q Consensus 1 M~~~~~~~~~~~~~~~l~~~a~a~~~~VGg~ 31 (151)
||++.+++.++-+++. +-..+|-+|.-|+.
T Consensus 1 MA~Kl~vialLC~aLv-a~vQ~APQYa~Gee 30 (65)
T PF10731_consen 1 MASKLIVIALLCVALV-AIVQSAPQYAPGEE 30 (65)
T ss_pred CcchhhHHHHHHHHHH-HHHhcCcccCCCCC
Confidence 8888776322222222 23556677888875
No 47
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=40.88 E-value=17 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.595 Sum_probs=13.9
Q ss_pred ccccccCCeeEeCcEEEE
Q 031882 44 YSTWASKQKFHFGDTIVF 61 (151)
Q Consensus 44 Y~~Wa~~~tf~vGD~L~F 61 (151)
|..|..++.-..||++.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888877778998876
No 48
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.32 E-value=45 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=24.8
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.++||.|+..|+. .|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 4667899999999985 67665 8999988763
No 49
>PLN02991 oxidoreductase
Probab=40.27 E-value=1.1e+02 Score=28.25 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=46.9
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEEcccccCcC-cCCCCCCccccCCCcEEEe-ccCceEEEEeCCCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEVSKADYDKC-RTKSPDGEIHETSPANYTL-NSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~Vs~~~y~~C-~~~~~~~~~~~~G~~~v~l-~~~G~~YFiC~v~~HC~~Gm 119 (151)
.+++.||+|+-+. +. -|.+.|......|.= ...-|+ ....+=.-++++ +.+|++||=+-...+-..|+
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI-~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPI-PPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCcc-CCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 4788999999887 43 255554321112220 011233 221111235666 47999999888777766789
Q ss_pred eEEEEecCCCC
Q 031882 120 KVTINIGGEHS 130 (151)
Q Consensus 120 Kl~I~V~~~~s 130 (151)
.-.+.|.+.+.
T Consensus 140 ~G~lIV~~~~~ 150 (543)
T PLN02991 140 FGAIRISSRPL 150 (543)
T ss_pred eeeEEEeCCcc
Confidence 88899886543
No 50
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=38.34 E-value=67 Score=18.00 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCe
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQK 120 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmK 120 (151)
...++..|.-||=.++...|+.|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567778999999999999999974
No 51
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=37.14 E-value=11 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=11.5
Q ss_pred ccCCeeEeCcEEEEee
Q 031882 48 ASKQKFHFGDTIVFNW 63 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~ 63 (151)
+..+.+++||.++|.+
T Consensus 69 v~~n~L~~GD~~~F~~ 84 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFEL 84 (100)
T ss_dssp HHHCT--TT-EEEEEE
T ss_pred HHHcCCCCCCEEEEEE
Confidence 5678899999999999
No 52
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=34.79 E-value=27 Score=29.52 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=10.3
Q ss_pred Ccchh--HHHHHHHHHHH
Q 031882 1 MGSKL--VLFGFLVVVPA 16 (151)
Q Consensus 1 M~~~~--~~~~~~~~~~~ 16 (151)
||++| +|||+|+|+++
T Consensus 1 MaMmMTGRVLLVCALCVL 18 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVL 18 (291)
T ss_pred CccchhchHHHHHHHHHH
Confidence 77655 56777766554
No 53
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=33.83 E-value=44 Score=25.35 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred EEEecCCCCCCCCCCCCCCcccccc-CCeeEeCcEEEEee
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWAS-KQKFHFGDTIVFNW 63 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~-~~tf~vGD~L~F~~ 63 (151)
..+|||+.| ..+..-|-+ +..|+.||+|.++-
T Consensus 40 ~~kVaD~Tg-------sI~isvW~e~~~~~~PGDIirLt~ 72 (134)
T KOG3416|consen 40 SCKVADETG-------SINISVWDEEGCLIQPGDIIRLTG 72 (134)
T ss_pred EEEEecccc-------eEEEEEecCcCcccCCccEEEecc
Confidence 367888754 245566653 46899999998864
No 54
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.47 E-value=68 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=23.5
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 127 (151)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5678999999999985 45554 888888775
No 55
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=32.64 E-value=72 Score=24.97 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=22.5
Q ss_pred EEEeccCceEEEEeCCCCCCCC---CCeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDR---GQKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 127 (151)
.+..+++|.+|..|+. .|.. .|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3567889999999985 3443 4888888765
No 56
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=32.43 E-value=1.2e+02 Score=23.21 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=27.3
Q ss_pred CeeEeCcEEEEee------cCCCeeEEEcccccCcCcCCCC
Q 031882 51 QKFHFGDTIVFNW------TGSHSVAEVSKADYDKCRTKSP 85 (151)
Q Consensus 51 ~tf~vGD~L~F~~------~~~H~V~~Vs~~~y~~C~~~~~ 85 (151)
...+.||++++.- ..-|+.+-+++...-.|+....
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 4689999999744 2469998888888889998554
No 57
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.82 E-value=49 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=24.0
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.+++|.||..|+. -|..| |.+.|+|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5677899999999985 46554 8888887753
No 58
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.33 E-value=66 Score=26.13 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.1
Q ss_pred EEEeccCceEEEEeCCCCCCCC---CCeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDR---GQKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 127 (151)
.+..+++|.+|..|+. -|.. .|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4567899999999986 4544 4888888775
No 59
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.07 E-value=75 Score=25.66 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=23.8
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.+++|.+|..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 4667899999999985 45554 8888887753
No 60
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=30.51 E-value=71 Score=24.13 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=26.4
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
++++.. |..|-|.. ..|..||++...+....+
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 577775 99999986 589999999999887654
No 61
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=29.68 E-value=82 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=24.2
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.+++|.|+-.|+. .|..| |++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5778999999999985 45554 8988888753
No 62
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.32 E-value=82 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.4
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.++||.+|..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeCH
Confidence 4667899999999986 45554 8888887653
No 63
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.95 E-value=93 Score=25.19 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=23.8
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.+++|.||-.|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcCH
Confidence 4667999999999985 45554 8888887753
No 64
>PLN02792 oxidoreductase
Probab=28.57 E-value=81 Score=28.92 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=49.7
Q ss_pred eeEeCcEEEEee-c---CC-------CeeEEE--cccccCc-----CcCCCCCC----ccccCCCc--EEEeccCceEEE
Q 031882 52 KFHFGDTIVFNW-T---GS-------HSVAEV--SKADYDK-----CRTKSPDG----EIHETSPA--NYTLNSNGTHYF 107 (151)
Q Consensus 52 tf~vGD~L~F~~-~---~~-------H~V~~V--s~~~y~~-----C~~~~~~~----~~~~~G~~--~v~l~~~G~~YF 107 (151)
.++-|++++..+ . .. |+.+.| ....|+. =|..+|.. .....|-. ++..|.||..+|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 455677776666 3 12 466666 2345642 23334441 11223332 577899999999
Q ss_pred EeCCCCCCCCCCeEEEEecCC
Q 031882 108 ICTVDSHCDRGQKVTINIGGE 128 (151)
Q Consensus 108 iC~v~~HC~~GmKl~I~V~~~ 128 (151)
=|-..-|=..||.+.+.|...
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~ 506 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSP 506 (536)
T ss_pred eEcchhccccceEEEEEEccC
Confidence 999999999999999988744
No 65
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.22 E-value=2.7e+02 Score=25.90 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=0.0
Q ss_pred CeeEeCcEEEEee-cC--------CCeeEEE-cccccCcCcCCCCCCccccCCCcEEEec-cCceEEEEeCCCCCCCCCC
Q 031882 51 QKFHFGDTIVFNW-TG--------SHSVAEV-SKADYDKCRTKSPDGEIHETSPANYTLN-SNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--------~H~V~~V-s~~~y~~C~~~~~~~~~~~~G~~~v~l~-~~G~~YFiC~v~~HC~~Gm 119 (151)
.....||+|+-+. +. -|.|.|- +...--.=-..-|+ ++..+=.-.++++ ..|++||-....-|-..|+
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~~~TqCPI-~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~ 139 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGVYITQCPI-QPGENFTYRFTVKDQIGTLWYHSHVSWQRATGV 139 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCCccccCCc-CCCCeEEEEEEeCCcceeEEEeeccccccccCc
Q ss_pred eEEEEecCCCCCC
Q 031882 120 KVTINIGGEHSSA 132 (151)
Q Consensus 120 Kl~I~V~~~~s~~ 132 (151)
.-++.|.+.+..|
T Consensus 140 ~G~liI~~~~~~p 152 (563)
T KOG1263|consen 140 FGALIINPRPGLP 152 (563)
T ss_pred eeEEEEcCCccCC
No 66
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=34 Score=25.60 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=15.8
Q ss_pred ccccCCeeEeCcEEEEee
Q 031882 46 TWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 46 ~Wa~~~tf~vGD~L~F~~ 63 (151)
.|++...+++||.|.|..
T Consensus 104 G~~~~~~i~vGd~v~~~~ 121 (126)
T COG1430 104 GWAARLGIKVGDRVEFRP 121 (126)
T ss_pred CchhhcCCccCCEEEecc
Confidence 478889999999999876
No 67
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.59 E-value=26 Score=25.56 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=12.3
Q ss_pred cCCeeEeCcEEEEee
Q 031882 49 SKQKFHFGDTIVFNW 63 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~ 63 (151)
+.+.+++||+|+|+=
T Consensus 30 krr~ik~GD~IiF~~ 44 (111)
T COG4043 30 KRRQIKPGDKIIFNG 44 (111)
T ss_pred hhcCCCCCCEEEEcC
Confidence 456889999999973
No 68
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=27.55 E-value=81 Score=25.19 Aligned_cols=32 Identities=19% Similarity=0.034 Sum_probs=25.4
Q ss_pred cEEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 95 ANYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 95 ~~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
..++.+++|.|+-.|+. .|-.| |++.|.|.++
T Consensus 172 ~~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 172 WYLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 36778999999999985 56665 8999998753
No 69
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.47 E-value=98 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=23.8
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.+++|.+|..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 4667899999999985 45554 8888887753
No 70
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=27.42 E-value=50 Score=22.12 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=11.9
Q ss_pred eeEeCcEEEEee-cC
Q 031882 52 KFHFGDTIVFNW-TG 65 (151)
Q Consensus 52 tf~vGD~L~F~~-~~ 65 (151)
++++||.|.|.+ .+
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 689999999999 44
No 71
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=27.20 E-value=47 Score=21.86 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=11.7
Q ss_pred ccCCeeEeCcEEEEee
Q 031882 48 ASKQKFHFGDTIVFNW 63 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~ 63 (151)
+.-..+++||.|.|.+
T Consensus 38 ~~l~~l~~Gd~V~F~~ 53 (70)
T PF11604_consen 38 VDLAGLKPGDKVRFTF 53 (70)
T ss_dssp SEESS-STT-EEEEEE
T ss_pred hhhhcCCCCCEEEEEE
Confidence 4446899999999999
No 72
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=27.10 E-value=30 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=27.2
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
++..+.||.+.|=|-+-.|=..||-..+.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 45678999999999999999999999999875
No 73
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=26.91 E-value=50 Score=24.05 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=15.8
Q ss_pred CCeeEeCcEEEEee---cCCCeeEEE
Q 031882 50 KQKFHFGDTIVFNW---TGSHSVAEV 72 (151)
Q Consensus 50 ~~tf~vGD~L~F~~---~~~H~V~~V 72 (151)
-..++-||.+.|.+ .+.-.|.|+
T Consensus 81 lsglKeGdkV~fvferv~gk~tv~qv 106 (108)
T COG5569 81 LSGLKEGDKVEFVFERVNGKLTVQQV 106 (108)
T ss_pred hhccccCCcEEEEEEeeCCEEEEEEe
Confidence 34688899999999 344444443
No 74
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=26.25 E-value=77 Score=27.31 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=23.5
Q ss_pred eeEEEecCCCCCCCCCC-----CCCCccccccCCeeEeCcEEEEee
Q 031882 23 AETYTVGDEMGWTTPPS-----GAAAYSTWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 23 a~~~~VGg~~GW~~~~~-----~~~~Y~~Wa~~~tf~vGD~L~F~~ 63 (151)
++.|+.| .|+...+. .+.||.+|. --||.|+++-
T Consensus 186 gaVFi~~--IG~~L~~g~~Hd~RapDYDDW~-----LNGDil~w~~ 224 (309)
T cd00645 186 GAVFIIG--IGGKLSDGKKHDGRAPDYDDWT-----LNGDILVWNP 224 (309)
T ss_pred CcEEEEe--ccCcCCCCCcCCCCCCCCcCcc-----ccceEEEEch
Confidence 4567776 46666532 578999999 4599987543
No 75
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.01 E-value=42 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.663 Sum_probs=21.6
Q ss_pred cEEEeccCceEEEEeCCCCCCCCCC
Q 031882 95 ANYTLNSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 95 ~~v~l~~~G~~YFiC~v~~HC~~Gm 119 (151)
+.+.++.-|.+-|+|+.-+||+.-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 5688888899999999999998754
No 76
>PTZ00213 asparagine synthetase A; Provisional
Probab=26.00 E-value=82 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.575 Sum_probs=18.4
Q ss_pred ceeEEEecCCCCCCCCCC-----CCCCccccccC
Q 031882 22 AAETYTVGDEMGWTTPPS-----GAAAYSTWASK 50 (151)
Q Consensus 22 ~a~~~~VGg~~GW~~~~~-----~~~~Y~~Wa~~ 50 (151)
.++.|+.| .||..... .+.||++|...
T Consensus 196 ~gaVFi~~--IG~~L~~G~~Hd~RApDYDDW~t~ 227 (348)
T PTZ00213 196 YGAVFLIG--IGCKLSSGDTHDLRAPDYDDWSSP 227 (348)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCccccccc
Confidence 35567776 56666542 57899999943
No 77
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=25.92 E-value=1.2e+02 Score=17.91 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhccc-ceeEEEec
Q 031882 8 FGFLVVVPAIFDAA-AAETYTVG 29 (151)
Q Consensus 8 ~~~~~~~~~l~~~a-~a~~~~VG 29 (151)
+++.+++++.+..+ .++.++=|
T Consensus 8 ~~l~lLal~~a~~~~pG~ViING 30 (36)
T PF08194_consen 8 FALLLLALAAAVPATPGNVIING 30 (36)
T ss_pred HHHHHHHHHhcccCCCCeEEECc
Confidence 44444444333333 44444433
No 78
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=25.50 E-value=3.1e+02 Score=21.02 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=12.4
Q ss_pred HHHHHHhhccccee-EEEec---CCCCCCCC
Q 031882 11 LVVVPAIFDAAAAE-TYTVG---DEMGWTTP 37 (151)
Q Consensus 11 ~~~~~~l~~~a~a~-~~~VG---g~~GW~~~ 37 (151)
+++++++.+|-..+ .|..= ...||.-.
T Consensus 11 ll~~~ll~sC~~~~~vy~~y~~~p~~~W~k~ 41 (156)
T TIGR03511 11 FLGACVLVSCTENTDVYHSYQSTPHGGWQKS 41 (156)
T ss_pred HHHHHHhcccCCCCeEEEEeeECCccCcCCC
Confidence 33334555555555 34321 23467643
No 79
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.21 E-value=1.1e+02 Score=25.10 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=24.0
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.++||.++-.|+. .|..| |++.|+|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5677899999999985 56655 8888887753
No 80
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=24.98 E-value=47 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.0
Q ss_pred CeeEeCcEEEEee-cCCC
Q 031882 51 QKFHFGDTIVFNW-TGSH 67 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~~H 67 (151)
+.|++||.+.|-+ +..|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 4899999999999 5544
No 81
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.92 E-value=53 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.5
Q ss_pred CCccccccCCeeEeCcEEEEee
Q 031882 42 AAYSTWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 42 ~~Y~~Wa~~~tf~vGD~L~F~~ 63 (151)
....+++...+.++||.|+|..
T Consensus 26 ~~~~k~~~~~~~~~Gd~v~yti 47 (76)
T PF01345_consen 26 LSITKTVNPSTANPGDTVTYTI 47 (76)
T ss_pred EEEEEecCCCcccCCCEEEEEE
Confidence 4466788889999999999876
No 82
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=22.88 E-value=1e+02 Score=25.68 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred ceeEEEecCCCCCCCCCC-----CCCCccccccC----CeeEeCcEEEEe
Q 031882 22 AAETYTVGDEMGWTTPPS-----GAAAYSTWASK----QKFHFGDTIVFN 62 (151)
Q Consensus 22 ~a~~~~VGg~~GW~~~~~-----~~~~Y~~Wa~~----~tf~vGD~L~F~ 62 (151)
.++.|+.| .|+..... .+.||.+|... .+=--||.|+++
T Consensus 191 ~gAVFi~g--IG~~L~~G~~Hd~RApDYDDW~t~~~~g~~GLNGDilvw~ 238 (244)
T PF03590_consen 191 YGAVFIIG--IGGKLSSGKPHDGRAPDYDDWSTPTEDGYHGLNGDILVWN 238 (244)
T ss_dssp HSEEEEE----SSB-SSSSBSS---TTTB--SSB-TTSSB-SEEEEEEEE
T ss_pred hCcEEEEe--cCCCCCCCCcCcCCCCCCcccccccccccCCCCccEEEec
Confidence 35677877 46665532 57899999822 222358988764
No 83
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.68 E-value=57 Score=20.24 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.2
Q ss_pred cCCeeEeCcEEEEee
Q 031882 49 SKQKFHFGDTIVFNW 63 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~ 63 (151)
+..+..+||.|.|+-
T Consensus 4 d~~~~~~Gd~v~Yti 18 (53)
T TIGR01451 4 DKTVATIGDTITYTI 18 (53)
T ss_pred CccccCCCCEEEEEE
Confidence 456889999999865
No 84
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.61 E-value=1.3e+02 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=23.6
Q ss_pred EEEeccCceEEEEeCCCCCCCC---CCeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDR---GQKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 128 (151)
.++.+++|.+|..|+. -|.. .|.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 4667899999999985 4554 48888887653
No 85
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=22.59 E-value=80 Score=21.90 Aligned_cols=39 Identities=21% Similarity=0.545 Sum_probs=28.5
Q ss_pred EEEecCC---CCCCCCCC---CCCCccccccCCeeEeCcEEEEee
Q 031882 25 TYTVGDE---MGWTTPPS---GAAAYSTWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 25 ~~~VGg~---~GW~~~~~---~~~~Y~~Wa~~~tf~vGD~L~F~~ 63 (151)
-+++|+. ..|..... ...+|..|.....+..|..++|||
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKy 62 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKC 62 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEE
Confidence 3778873 36884321 234678899888899999999999
No 86
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=22.48 E-value=67 Score=20.41 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.4
Q ss_pred cCCeeEeCcEEEEee
Q 031882 49 SKQKFHFGDTIVFNW 63 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~ 63 (151)
.++.|..||.|.|.+
T Consensus 15 ~~~pv~~Gd~i~~~~ 29 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPF 29 (64)
T ss_dssp TTEEEETT-EEEEEE
T ss_pred cCCCccCCCEEEEEe
Confidence 457899999999999
No 87
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=22.35 E-value=5.8e+02 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.2
Q ss_pred ccceeEEEecCCCC
Q 031882 20 AAAAETYTVGDEMG 33 (151)
Q Consensus 20 ~a~a~~~~VGg~~G 33 (151)
.+....+.||+..|
T Consensus 24 ~~~~~~~~vg~~~~ 37 (421)
T PRK09723 24 TDDNVSYIVGNYYG 37 (421)
T ss_pred ccCceEEEEccccc
Confidence 34578899998544
No 88
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=22.34 E-value=31 Score=20.70 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=24.0
Q ss_pred EecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEeecCCCee
Q 031882 27 TVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNWTGSHSV 69 (151)
Q Consensus 27 ~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~~~~H~V 69 (151)
++|.+.+=++| ..|.....++.||.|.+...+...+
T Consensus 2 kvg~s~~v~iP-------k~~~~~l~l~~Gd~v~i~~~~~g~i 37 (47)
T PF04014_consen 2 KVGNSGQVTIP-------KEIREKLGLKPGDEVEIEVEGDGKI 37 (47)
T ss_dssp EETTCSEEEE--------HHHHHHTTSSTTTEEEEEEETTSEE
T ss_pred EECCCceEECC-------HHHHHHcCCCCCCEEEEEEeCCCEE
Confidence 45655555555 4577777889999999999433333
No 89
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.57 E-value=1.3e+02 Score=24.36 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=23.5
Q ss_pred EEEeccCceEEEEeCCCCCCCC---CCeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDR---GQKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 128 (151)
.+..+++|.+|..|+. -|.. .|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeCH
Confidence 4667899999999986 4544 48888887653
No 90
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=21.51 E-value=1.2e+02 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcccceeEEEecCCCCCC
Q 031882 7 LFGFLVVVPAIFDAAAAETYTVGDEMGWT 35 (151)
Q Consensus 7 ~~~~~~~~~~l~~~a~a~~~~VGg~~GW~ 35 (151)
++.++.++++....+.+.+.+||-...|-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~ 36 (247)
T PRK09495 8 SLAALTLAFAVSSHAADKKLVVATDTAFV 36 (247)
T ss_pred HHHHHHHHHHhHhhccCCeEEEEeCCCCC
Confidence 34444444444556667788999654554
No 91
>PF15240 Pro-rich: Proline-rich
Probab=21.47 E-value=60 Score=25.80 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhcc
Q 031882 8 FGFLVVVPAIFDA 20 (151)
Q Consensus 8 ~~~~~~~~~l~~~ 20 (151)
||+.+++|+|.++
T Consensus 4 VLLSvALLALSSA 16 (179)
T PF15240_consen 4 VLLSVALLALSSA 16 (179)
T ss_pred HHHHHHHHHhhhc
Confidence 3333333344433
No 92
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=21.31 E-value=84 Score=21.05 Aligned_cols=39 Identities=26% Similarity=0.667 Sum_probs=27.6
Q ss_pred EEEecCC---CCCCCCCC---CCCCccccccCCeeEeCcEEEEee
Q 031882 25 TYTVGDE---MGWTTPPS---GAAAYSTWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 25 ~~~VGg~---~GW~~~~~---~~~~Y~~Wa~~~tf~vGD~L~F~~ 63 (151)
-+++|+. .+|..... ...++..|.....+..|+.++|+|
T Consensus 17 l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy 61 (95)
T cd05808 17 VYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKY 61 (95)
T ss_pred EEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEE
Confidence 3678862 36874321 235667898888888899999999
No 93
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=21.14 E-value=59 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=12.6
Q ss_pred CCeeEeCcEEEEee-cCC-CeeEEEccccc
Q 031882 50 KQKFHFGDTIVFNW-TGS-HSVAEVSKADY 77 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~~-H~V~~Vs~~~y 77 (151)
.-.|+.||.+.+.= .+. |++.......|
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~f 32 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRKHTITLEPGGEF 32 (54)
T ss_dssp --S--TT-EEEEEETT--EEEEE--TT-EE
T ss_pred cCCCCCCCEEEEccCCCCeeeEEECCCCeE
Confidence 45799999999988 665 55544344333
No 94
>PRK11528 hypothetical protein; Provisional
Probab=21.13 E-value=1.5e+02 Score=24.63 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCccccccCCeeEeC--------cEEEEeecCCCeeEE
Q 031882 32 MGWTTPPSGAAAYSTWASKQKFHFG--------DTIVFNWTGSHSVAE 71 (151)
Q Consensus 32 ~GW~~~~~~~~~Y~~Wa~~~tf~vG--------D~L~F~~~~~H~V~~ 71 (151)
.+|.-.. .+|-.|.+....+.+ +.|++.+.+.++.-.
T Consensus 26 ~~w~dis---~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~~~~wGD 70 (254)
T PRK11528 26 GGFANIS---LNYLDWTSRTTEKSSDKSHKDDFGYLELEGGAGFSWGE 70 (254)
T ss_pred cccccee---ehhhhhhccccccccccCCcCCCcEEEEEccccCCeEe
Confidence 3677543 788899888665432 278888855566544
No 95
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.05 E-value=1.3e+02 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.7
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGGE 128 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 128 (151)
.++.+++|.+|..|+. -|..| |.+.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 4678999999999985 45554 8888887653
No 96
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=20.68 E-value=91 Score=20.29 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=10.4
Q ss_pred CeeEeCcEEEEee
Q 031882 51 QKFHFGDTIVFNW 63 (151)
Q Consensus 51 ~tf~vGD~L~F~~ 63 (151)
+..++||++.|+-
T Consensus 2 ~~a~vGdiIefk~ 14 (57)
T PF09953_consen 2 KKAKVGDIIEFKD 14 (57)
T ss_pred cccccCcEEEEcC
Confidence 3568999999975
No 97
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=83 Score=23.84 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.9
Q ss_pred cCCeeEeCcEEEEeecCCCeeEEEc
Q 031882 49 SKQKFHFGDTIVFNWTGSHSVAEVS 73 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~~~~H~V~~Vs 73 (151)
.++-|.-=|-|+|..+..|+|.+|.
T Consensus 88 ~Srlf~FVDDlEfyl~~d~~vi~vR 112 (141)
T COG4446 88 TSRLFGFVDDLEFYLPQDHNVIWVR 112 (141)
T ss_pred HHHHhhcccceEEecCCCCceEEEe
Confidence 4457888899999888889999993
No 98
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=20.51 E-value=1.1e+02 Score=26.51 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=23.5
Q ss_pred ceeEEEecCCCCCCCCCC-----CCCCccccccCCeeEeCcEEEEee
Q 031882 22 AAETYTVGDEMGWTTPPS-----GAAAYSTWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 22 ~a~~~~VGg~~GW~~~~~-----~~~~Y~~Wa~~~tf~vGD~L~F~~ 63 (151)
.++.|+.| .|+..++. .+.||.+|. --||.|+++-
T Consensus 195 ~gaVFi~~--IG~~L~~g~~Hd~RapDYDDW~-----LNGDilvw~~ 234 (327)
T PRK05425 195 YGAVFLIG--IGGKLSDGKPHDGRAPDYDDWG-----LNGDILVWNP 234 (327)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCCcCcc-----cCceEEEEcc
Confidence 34567776 46666532 578999996 3489887543
No 99
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=20.42 E-value=1.3e+02 Score=22.27 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=39.6
Q ss_pred CCeeEeCcEEEEee--cCCCeeEEEc--cccc-----CcCcCCCCC---CccccCCC---cEEEecc-CceEEEEe----
Q 031882 50 KQKFHFGDTIVFNW--TGSHSVAEVS--KADY-----DKCRTKSPD---GEIHETSP---ANYTLNS-NGTHYFIC---- 109 (151)
Q Consensus 50 ~~tf~vGD~L~F~~--~~~H~V~~Vs--~~~y-----~~C~~~~~~---~~~~~~G~---~~v~l~~-~G~~YFiC---- 109 (151)
..+++.|+++++++ .+.+..+.+. ...+ |.-... |. ......|. ..|+.++ +|.||+.+
T Consensus 61 ~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~-p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~ 139 (159)
T PF00394_consen 61 VIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVE-PYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQH 139 (159)
T ss_dssp EEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEE-EEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESS
T ss_pred eEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccccc-ccccceEEeeCCeEEEEEEEeCCCCCeEEEEEeccc
Confidence 35899999999988 4444333221 1100 101000 11 01123333 3466776 78888888
Q ss_pred CCCCCCCCCCeEEEEec
Q 031882 110 TVDSHCDRGQKVTINIG 126 (151)
Q Consensus 110 ~v~~HC~~GmKl~I~V~ 126 (151)
....+...|+.++|-+-
T Consensus 140 ~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 140 DSINDPQNGNALAILRY 156 (159)
T ss_dssp SSSHSHGGGTTEEEEEE
T ss_pred CCCccCCCcEEEEEEEE
Confidence 33445567787777653
No 100
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=20.40 E-value=33 Score=28.51 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCeeEeCcEE------EEee-cCCCeeEEE-cccccCcCcCC
Q 031882 50 KQKFHFGDTI------VFNW-TGSHSVAEV-SKADYDKCRTK 83 (151)
Q Consensus 50 ~~tf~vGD~L------~F~~-~~~H~V~~V-s~~~y~~C~~~ 83 (151)
+..++.||+- |||+ ..+-.|... +...|..|...
T Consensus 6 gs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~ 47 (249)
T PF11766_consen 6 GSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQ 47 (249)
T ss_dssp TTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE
T ss_pred ccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEeccc
Confidence 3578899987 7899 667777444 77789889754
No 101
>PF02989 DUF228: Lyme disease proteins of unknown function; InterPro: IPR004239 This group comprises proteins of unknown function from Borrelia burgdorferi, the causitive organism of Lyme disease.
Probab=20.28 E-value=56 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=17.6
Q ss_pred CCcccc--ccCCeeEeCcEEEEee
Q 031882 42 AAYSTW--ASKQKFHFGDTIVFNW 63 (151)
Q Consensus 42 ~~Y~~W--a~~~tf~vGD~L~F~~ 63 (151)
-+|..| +.+.+++.||+|.|+-
T Consensus 116 nnFegyLvak~~~ik~gdkL~fN~ 139 (184)
T PF02989_consen 116 NNFEGYLVAKDSTIKAGDKLIFNK 139 (184)
T ss_pred CCeEEEEEECCCCCCcCcEEEecC
Confidence 367777 6678999999999964
No 102
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=20.17 E-value=99 Score=28.18 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=30.1
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
++..+.||...|=|-+.-|=..||-+.+.|...+
T Consensus 502 r~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 502 RIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred EEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 5677999999999999999999999999987653
Done!