Query 031882
Match_columns 151
No_of_seqs 121 out of 889
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ws8_A Mavicyanin; oxidized fo 100.0 1.6E-42 5.6E-47 251.9 7.5 108 22-132 1-109 (109)
2 1jer_A Cucumber stellacyanin; 100.0 1.5E-41 5.1E-46 256.0 7.5 107 22-130 2-111 (138)
3 1x9u_A Umecyanin; cupredoxin, 100.0 1.1E-40 3.7E-45 244.7 8.2 106 24-131 2-109 (116)
4 2cbp_A Cucumber basic protein; 100.0 7.9E-39 2.7E-43 227.6 6.6 95 24-126 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.1E-34 3.9E-39 204.4 8.2 90 24-126 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.4 7.5E-13 2.6E-17 97.5 9.2 97 20-127 13-140 (140)
7 1bxv_A Plastocyanin; copper pr 99.3 7.8E-12 2.7E-16 84.8 6.1 84 25-126 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.2 5E-11 1.7E-15 90.1 6.8 76 50-126 62-154 (154)
9 1pmy_A Pseudoazurin; electron 99.1 2.7E-10 9.1E-15 83.3 8.6 84 29-129 11-96 (123)
10 1paz_A Pseudoazurin precursor; 99.1 3.8E-10 1.3E-14 82.4 7.8 84 29-129 11-96 (123)
11 2aan_A Auracyanin A; cupredoxi 99.0 2.5E-09 8.5E-14 78.5 10.8 95 21-126 16-139 (139)
12 3erx_A Pseudoazurin; copper pr 99.0 6.7E-10 2.3E-14 81.3 6.5 75 49-130 21-97 (123)
13 1iuz_A Plastocyanin; electron 99.0 6E-10 2.1E-14 77.1 5.8 90 24-126 2-98 (98)
14 1plc_A Plastocyanin; electron 99.0 1.7E-09 5.7E-14 74.7 7.8 89 25-126 2-99 (99)
15 3tu6_A Pseudoazurin (blue copp 99.0 9.9E-10 3.4E-14 80.9 6.9 85 29-130 12-99 (127)
16 2gim_A Plastocyanin; beta shee 99.0 3E-09 1E-13 74.0 9.1 87 25-126 5-105 (106)
17 3ef4_A Pseudoazurin, blue copp 98.9 2.4E-09 8.2E-14 78.6 7.7 83 28-127 10-95 (124)
18 1b3i_A PETE protein, protein ( 98.9 4.4E-09 1.5E-13 72.2 8.0 87 25-126 4-97 (97)
19 1kdj_A Plastocyanin; electron 98.9 2.6E-09 8.9E-14 73.9 6.9 90 25-126 2-102 (102)
20 1byp_A Protein (plastocyanin); 98.9 5.7E-09 1.9E-13 71.8 7.8 90 25-126 2-99 (99)
21 2plt_A Plastocyanin; electron 98.8 2.8E-09 9.6E-14 73.2 5.0 90 24-126 2-98 (98)
22 1pcs_A Plastocyanin; electron 98.8 1.9E-08 6.4E-13 69.1 7.1 89 25-126 4-98 (98)
23 3cvb_A Plastocyanin; cupredoxi 98.5 5.6E-07 1.9E-11 62.0 7.3 87 25-126 4-104 (105)
24 2ux6_A Pseudoazurin; type-1 co 98.4 3.6E-07 1.2E-11 66.4 6.5 72 49-129 21-94 (122)
25 4hci_A Cupredoxin 1; structura 98.4 1E-07 3.4E-12 66.1 2.9 85 19-126 9-100 (100)
26 3c75_A Amicyanin; copper prote 98.4 3.4E-07 1.2E-11 67.1 5.6 70 49-126 60-132 (132)
27 1cuo_A Protein (azurin ISO-2); 98.4 4.3E-06 1.5E-10 61.4 11.0 91 25-126 4-128 (129)
28 2ov0_A Amicyanin; beta-sandwic 98.4 6.6E-07 2.2E-11 62.6 6.3 84 20-126 15-105 (105)
29 3ay2_A Lipid modified azurin p 98.4 1.4E-06 4.8E-11 66.9 8.2 93 23-126 42-166 (167)
30 1id2_A Amicyanin; beta barrel, 98.3 1.2E-06 4E-11 61.6 6.1 87 21-126 17-106 (106)
31 2iaa_C Azurin; quinoprotein, t 98.1 1.8E-05 6E-10 58.0 9.5 91 25-126 3-127 (128)
32 2ccw_A Azurin II, AZN-2; elect 98.0 1.9E-05 6.5E-10 57.9 7.9 91 25-126 4-128 (129)
33 1nwp_A Azurin; electron transp 98.0 1.8E-05 6.3E-10 57.9 7.8 91 25-126 4-128 (128)
34 1iko_P Ephrin-B2; greek KEY, g 97.6 2.5E-05 8.6E-10 60.6 2.2 80 53-132 26-145 (178)
35 2x11_B Ephrin-A5; receptor-sig 97.3 0.00038 1.3E-08 53.9 6.0 100 20-131 28-166 (177)
36 3czu_B Ephrin-A1; ATP-binding, 97.2 0.00049 1.7E-08 53.5 5.9 107 15-133 21-166 (182)
37 1iby_A Nitrosocyanin; RED copp 97.2 0.00023 7.9E-09 49.6 3.6 65 50-126 39-111 (112)
38 2cua_A Protein (CUA); CUA cent 97.0 0.0019 6.5E-08 47.4 6.9 67 49-127 60-135 (135)
39 3fsa_A Azurin; copper, cupredo 96.8 0.017 5.7E-07 42.2 10.2 88 25-126 4-125 (125)
40 2dv6_A Nitrite reductase; elec 96.0 0.0077 2.6E-07 51.0 5.3 74 49-130 55-135 (447)
41 2wo3_B Ephrin-A2; transferase- 95.6 0.021 7.1E-07 43.3 5.5 79 51-132 32-148 (157)
42 1shx_A Ephrin-A5; ephrin signa 95.2 0.024 8.4E-07 42.0 4.8 77 51-130 23-136 (138)
43 1fwx_A Nitrous oxide reductase 94.8 0.032 1.1E-06 50.1 5.1 67 50-128 514-593 (595)
44 3sbq_A Nitrous-oxide reductase 94.3 0.067 2.3E-06 48.3 6.0 67 49-127 558-637 (638)
45 2vsm_B Ephrin-B2; developmenta 94.2 0.059 2E-06 40.0 4.7 76 52-127 24-139 (140)
46 3d12_B Ephrin-B3; beta propell 93.8 0.045 1.5E-06 40.7 3.4 74 52-126 23-140 (141)
47 3s8f_B Cytochrome C oxidase su 93.5 0.23 8E-06 37.6 6.9 68 49-126 93-167 (168)
48 3hei_B Ephrin-A1; EPH receptor 90.2 0.44 1.5E-05 35.0 4.9 75 51-126 22-131 (132)
49 1mzy_A Copper-containing nitri 87.1 0.88 3E-05 36.9 5.3 75 51-129 66-154 (333)
50 1oe1_A Dissimilatory copper-co 86.3 1.1 3.6E-05 36.4 5.4 75 51-129 67-154 (336)
51 1kbv_A ANIA, major outer membr 84.7 1.1 3.7E-05 36.5 4.6 77 50-130 71-159 (327)
52 2zoo_A Probable nitrite reduct 83.0 0.91 3.1E-05 38.2 3.6 77 50-130 61-149 (442)
53 3gdc_A Multicopper oxidase; be 77.2 3.3 0.00011 33.0 5.0 81 51-132 68-159 (288)
54 2bw4_A Copper-containing nitri 76.4 3.6 0.00012 33.2 5.1 75 51-129 73-160 (340)
55 3l6w_A Hemocyanin 1; cupredoxi 74.9 3.5 0.00012 36.2 4.8 73 50-126 412-491 (491)
56 3cg8_A Laccase; oxidoreductase 68.7 6.8 0.00023 32.1 5.1 34 100-133 279-312 (343)
57 2zwn_A Two-domain type laccase 65.5 7.1 0.00024 31.7 4.5 35 96-130 92-129 (339)
58 1yel_A AT1G16640; CESG, protei 64.5 1.1 3.7E-05 30.6 -0.5 16 48-63 73-88 (104)
59 1mzy_A Copper-containing nitri 62.8 4 0.00014 33.0 2.5 34 96-129 286-320 (333)
60 1v10_A Laccase; multicopper bl 62.3 13 0.00043 32.1 5.7 34 96-129 117-151 (521)
61 1oe1_A Dissimilatory copper-co 57.1 5.1 0.00017 32.3 2.1 34 96-129 286-320 (336)
62 3gdc_A Multicopper oxidase; be 55.8 4.1 0.00014 32.4 1.4 32 96-127 257-288 (288)
63 4i1k_A B3 domain-containing tr 53.3 3 0.0001 30.5 0.2 25 48-72 112-137 (146)
64 1aoz_A Ascorbate oxidase; oxid 53.0 26 0.0009 30.3 6.2 35 96-130 92-126 (552)
65 3g5w_A Multicopper oxidase typ 50.9 9.1 0.00031 30.9 2.7 35 96-130 91-128 (318)
66 1sdd_A Coagulation factor V; c 50.7 1.8 6E-05 34.9 -1.6 76 50-128 216-301 (306)
67 1cyx_A CYOA; electron transpor 49.0 17 0.0006 28.2 3.9 64 51-126 43-115 (205)
68 2q9o_A Laccase-1; multicopper 48.5 23 0.00077 30.9 5.0 35 96-130 126-160 (559)
69 3hb3_B Cytochrome C oxidase su 48.5 16 0.00055 29.9 3.8 33 95-129 231-266 (298)
70 3iuw_A Activating signal coint 48.1 6.7 0.00023 26.4 1.3 12 51-62 36-47 (83)
71 1zpu_A Iron transport multicop 47.8 27 0.00092 30.2 5.4 35 96-130 92-127 (534)
72 3sqr_A Laccase; multicopper ox 47.7 33 0.0011 30.3 6.0 34 96-129 156-189 (580)
73 3t6v_A Laccase; beta barrel, o 47.5 31 0.0011 29.7 5.7 35 96-130 97-132 (495)
74 1kbv_A ANIA, major outer membr 46.8 12 0.0004 30.2 2.8 35 96-130 275-310 (327)
75 2gsm_B Cytochrome C oxidase su 46.4 18 0.00062 28.8 3.8 31 95-127 213-246 (262)
76 3pxl_A Laccase; 4-copper prote 44.3 37 0.0013 29.2 5.7 35 96-130 96-131 (499)
77 1v54_B Cytochrome C oxidase po 43.2 18 0.00061 28.3 3.2 30 96-127 183-215 (227)
78 3t9w_A Small laccase, multi-co 42.6 9.5 0.00032 30.5 1.6 35 100-134 260-294 (299)
79 3kw8_A Laccase, putative coppe 42.5 11 0.00039 29.5 2.0 33 101-133 239-271 (276)
80 2j5w_A Ceruloplasmin, ferroxid 41.1 16 0.00054 34.6 3.0 74 50-128 633-718 (1065)
81 2r7e_A Coagulation factor VIII 40.9 31 0.0011 31.3 4.8 35 96-130 298-332 (742)
82 1kzq_A Major surface antigen P 38.5 12 0.0004 30.4 1.5 45 105-150 234-284 (289)
83 3g5w_A Multicopper oxidase typ 37.4 41 0.0014 27.0 4.6 35 96-130 239-279 (318)
84 2zoo_A Probable nitrite reduct 37.2 26 0.00088 29.1 3.5 34 96-129 265-299 (442)
85 2qcp_X Cation efflux system pr 35.9 18 0.00063 23.6 1.9 14 50-63 51-64 (80)
86 2vb2_X Copper protein, cation 35.8 18 0.00063 24.1 1.9 16 48-63 57-72 (88)
87 3tas_A Small laccase, multi-co 34.4 70 0.0024 25.4 5.6 31 101-131 114-150 (313)
88 2dv6_A Nitrite reductase; elec 32.4 33 0.0011 28.4 3.4 35 96-130 402-436 (447)
89 1fft_B Ubiquinol oxidase; elec 32.4 24 0.00082 29.0 2.5 65 50-126 152-225 (315)
90 1xne_A Hypothetical protein PF 32.1 11 0.00039 26.5 0.4 13 51-63 33-45 (113)
91 3t9w_A Small laccase, multi-co 31.3 1.5E+02 0.0051 23.4 7.0 32 101-132 130-167 (299)
92 1hfu_A Laccase 1; oxidoreducta 30.8 55 0.0019 27.9 4.6 34 96-129 96-130 (503)
93 2b1y_A Hypothetical protein AT 29.8 1.6 5.5E-05 30.7 -4.3 80 51-131 14-96 (104)
94 3kw8_A Laccase, putative coppe 29.4 59 0.002 25.3 4.2 31 102-132 109-145 (276)
95 1sdd_B Coagulation factor V; c 29.3 24 0.00081 31.1 2.0 32 96-127 296-327 (647)
96 2l55_A SILB,silver efflux prot 28.9 27 0.00094 22.9 1.9 16 48-63 43-58 (82)
97 2uxt_A Protein SUFI, SUFI; oxi 28.5 35 0.0012 28.8 2.9 73 51-129 52-140 (451)
98 2xu9_A Laccase; oxidoreductase 28.1 65 0.0022 26.8 4.5 81 52-133 50-141 (439)
99 2zwn_A Two-domain type laccase 27.6 78 0.0027 25.4 4.8 34 96-129 240-279 (339)
100 2z0t_A Putative uncharacterize 26.2 19 0.00064 25.2 0.6 12 51-62 32-43 (109)
101 4he6_A Peptidase family U32; u 26.1 23 0.0008 23.1 1.1 18 49-66 26-43 (89)
102 4dny_A Metalloprotease STCE; m 25.8 19 0.00066 26.0 0.7 12 52-63 101-112 (126)
103 2j5w_A Ceruloplasmin, ferroxid 25.7 28 0.00096 32.9 1.9 77 50-131 272-360 (1065)
104 2bw4_A Copper-containing nitri 24.7 39 0.0013 27.0 2.4 34 96-129 292-326 (340)
105 2hzs_I RNA polymerase II media 24.6 1.6 5.4E-05 23.0 -3.9 14 50-63 4-17 (27)
106 1ed7_A Chitinase A1, (CHBD-CHI 24.5 20 0.00069 20.8 0.5 16 46-61 1-16 (45)
107 2k75_A Uncharacterized protein 24.4 35 0.0012 23.1 1.8 30 25-63 41-70 (106)
108 2r7e_B Coagulation factor VIII 24.4 32 0.0011 31.4 2.0 31 101-131 269-301 (770)
109 3tas_A Small laccase, multi-co 22.2 34 0.0012 27.3 1.5 30 100-129 244-273 (313)
110 2laa_A Beta/alpha-amylase; SBD 20.9 47 0.0016 22.9 1.9 34 32-65 27-65 (104)
No 1
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.6e-42 Score=251.90 Aligned_cols=108 Identities=38% Similarity=0.736 Sum_probs=98.5
Q ss_pred ceeEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCCCcEEEec
Q 031882 22 AAETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETSPANYTLN 100 (151)
Q Consensus 22 ~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~~v~l~ 100 (151)
+|++|+|||+.||++++ ..+|++||++++|++||+|+|+| +++|+|+||++++|+.|+.++|+ ..+++|+++|+|+
T Consensus 1 ~a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~-~~~~~G~~~v~L~ 77 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPA-ASYTSGADSIPLK 77 (109)
T ss_dssp CCCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCS-EEECSSEEEEECC
T ss_pred CCcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcc-cccCCCCEEEEEC
Confidence 47899999999999984 47899999999999999999999 89999999999999999999999 8899999999999
Q ss_pred cCceEEEEeCCCCCCCCCCeEEEEecCCCCCC
Q 031882 101 SNGTHYFICTVDSHCDRGQKVTINIGGEHSSA 132 (151)
Q Consensus 101 ~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s~~ 132 (151)
++|++||||++++||++||||+|+|.++++++
T Consensus 78 ~~G~~yFic~~~gHC~~GmKl~I~V~~~~s~~ 109 (109)
T 1ws8_A 78 RPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 109 (109)
T ss_dssp SSEEEEEECCSTTTTTTTCEEEEEECC-----
T ss_pred CCcCEEEECCCCCcccCCCEEEEEEcCCCCCC
Confidence 99999999999999999999999999877654
No 2
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.5e-41 Score=256.05 Aligned_cols=107 Identities=36% Similarity=0.751 Sum_probs=100.2
Q ss_pred ceeEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEE-cccccCcCcCCCCCCccccCCCcEEEe
Q 031882 22 AAETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEV-SKADYDKCRTKSPDGEIHETSPANYTL 99 (151)
Q Consensus 22 ~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~V-s~~~y~~C~~~~~~~~~~~~G~~~v~l 99 (151)
+|++|+|||+.||+++++ ..+|++||++|+|+|||+|+|+| +++|+|+|| ++++|+.|+.++++ ..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~-~~~~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSD-NDVERTSPVIER 79 (138)
T ss_dssp CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSC-CCCCCCSCEEEE
T ss_pred CceEEEECCcCcCcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCcc-ccccCCCeEEEe
Confidence 688999999999999853 57899999999999999999999 899999999 99999999999999 889999999999
Q ss_pred -ccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 100 -NSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 100 -~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
+++|++||||++++||++||||+|+|.+..+
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 9999999999999999999999999987654
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1.1e-40 Score=244.71 Aligned_cols=106 Identities=39% Similarity=0.828 Sum_probs=96.2
Q ss_pred eEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCCCcEEEeccC
Q 031882 24 ETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETSPANYTLNSN 102 (151)
Q Consensus 24 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~~v~l~~~ 102 (151)
++|+|||+.||+++. +..+|++|+++++|++||+|+|+| +++|+|+||++++|+.|+.++|+ ..+++|+++|+|+++
T Consensus 2 ~~~~VG~~~GW~~~~-~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~-~~~~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPS-DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI-SHMTTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGGGCSSCCS-STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCS-EEECSSSEEEECCSC
T ss_pred eEEEECCcCcCcCCC-CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCc-cccCCCCeEEEECCC
Confidence 579999999999862 347899999999999999999999 89999999999999999999998 889999999999999
Q ss_pred ceEEEEeCCCCCCCCCCeEEE-EecCCCCC
Q 031882 103 GTHYFICTVDSHCDRGQKVTI-NIGGEHSS 131 (151)
Q Consensus 103 G~~YFiC~v~~HC~~GmKl~I-~V~~~~s~ 131 (151)
|++||||++++||++||||+| +|.+++++
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~~ 109 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGAG 109 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC----
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCCC
Confidence 999999999999999999999 88766553
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=7.9e-39 Score=227.64 Aligned_cols=95 Identities=29% Similarity=0.696 Sum_probs=90.5
Q ss_pred eEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCCCcEEEeccC
Q 031882 24 ETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETSPANYTLNSN 102 (151)
Q Consensus 24 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~~v~l~~~ 102 (151)
++|+|||+.||++ +|++||++++|++||+|+|+| +++|+|+||++++|+.|+.++|+ ..+++|+++|+| ++
T Consensus 1 ~~~~VG~~~GW~~------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~-~~~~~G~~~v~L-~~ 72 (96)
T 2cbp_A 1 AVYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA-KVYTSGRDQIKL-PK 72 (96)
T ss_dssp CEEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTC-EEECSSEEEEEC-CS
T ss_pred CEEEECCcCCCcc------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCc-ccccCCCeEEEe-cC
Confidence 4799999999995 499999999999999999999 99999999999999999999998 889999999999 89
Q ss_pred ceEEEEeCCCCCCCCCCeEEEEec
Q 031882 103 GTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 103 G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
|++||||++++||++||||+|+|+
T Consensus 73 g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 73 GQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.1e-34 Score=204.43 Aligned_cols=90 Identities=30% Similarity=0.661 Sum_probs=84.6
Q ss_pred eEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCCCcEEEeccC
Q 031882 24 ETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETSPANYTLNSN 102 (151)
Q Consensus 24 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~~~v~l~~~ 102 (151)
++|+| ||+++ ++|+++++|++||+|+|+| +++|+|+||++++|+.|+.++|+ ..+++|+++|+|+ +
T Consensus 1 ~~y~V----gW~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~-~~~~~G~~~v~L~-~ 67 (91)
T 1f56_A 1 AVYNI----GWSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGA-RTYSSGQDRIKLT-R 67 (91)
T ss_dssp CEEEE----ECSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTC-EEECSSEEEEECC-S
T ss_pred CEEEE----eCCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCc-ccccCCCcEEEeC-C
Confidence 46899 89954 8999999999999999999 99999999999999999999998 8899999999996 8
Q ss_pred ceEEEEeCCCCCCCCCCeEEEEec
Q 031882 103 GTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 103 G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
|++||||++++||++||||+|+|.
T Consensus 68 g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 68 GQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.42 E-value=7.5e-13 Score=97.47 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=66.8
Q ss_pred ccceeEEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-----CCCeeEEEccc-ccCcC-----------
Q 031882 20 AAAAETYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-----GSHSVAEVSKA-DYDKC----------- 80 (151)
Q Consensus 20 ~a~a~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-----~~H~V~~Vs~~-~y~~C----------- 80 (151)
.+.+.++.|+-. .+|.+.| +..+++.||+++|+| + ..|++...+.. ++..+
T Consensus 13 ~~~~~~v~V~~~~~~~~F~P----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T 1qhq_A 13 ETPAQTVEVRAAPDALAFAQ----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADA 82 (140)
T ss_dssp SCCSEEEEEEBCSSSSSBSC----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGG
T ss_pred cCCCEEEEEEEeCCCceEeC----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccc
Confidence 344567777753 3688875 457999999999999 6 47999877422 11110
Q ss_pred ------cCCC------CCCccccCCCcEEEeccCceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 81 ------RTKS------PDGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 81 ------~~~~------~~~~~~~~G~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
+..+ .+ ....++..+++++++|+|+|+|++++||..|||..|+|.+
T Consensus 83 ~~~~~~~~~~~~~~t~~l-~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~p 140 (140)
T 1qhq_A 83 LFVPPPDTPNALAWTAML-NAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 140 (140)
T ss_dssp TTCCCTTCTTEEEECCCB-CTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred cccCccccccccccceee-CCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEcC
Confidence 0000 11 1222333567788999999999999999999999999963
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.26 E-value=7.8e-12 Score=84.80 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee--cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEec
Q 031882 25 TYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW--TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLN 100 (151)
Q Consensus 25 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~ 100 (151)
+..+|+. .+|.+.| +..++++||+|+|++ ...|+|...+...+. . .. .....| ..+++++
T Consensus 4 ~v~~~~~~~~~~f~P----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~---~-~~--~~~~~g~~~~~~f~ 67 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS---H-KD--LAFSPGETFEATFS 67 (91)
T ss_dssp EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC---E-EE--EECSTTCEEEEECC
T ss_pred EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC---c-cc--ceeCCCCEEEEEeC
Confidence 4556653 4677775 357999999999999 468999865432221 0 10 122334 4688999
Q ss_pred cCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 101 SNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 101 ~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
+||+|+|+|. .||..||+..|.|.
T Consensus 68 ~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 68 EPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCEEEEEEeC--CCccCCCEEEEEEC
Confidence 9999999999 79999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.16 E-value=5e-11 Score=90.09 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=57.2
Q ss_pred CCeeEeCcEEEEee-cC----CCeeEEEc-ccccCcCcCCCCCC------ccccCC---Cc--EEEeccCceEEEEeCCC
Q 031882 50 KQKFHFGDTIVFNW-TG----SHSVAEVS-KADYDKCRTKSPDG------EIHETS---PA--NYTLNSNGTHYFICTVD 112 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~----~H~V~~Vs-~~~y~~C~~~~~~~------~~~~~G---~~--~v~l~~~G~~YFiC~v~ 112 (151)
..++++||+|+|++ +. .|++..++ ...|+.|.....+. .....| .. ++++ +||.|||+|.++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46899999999999 53 59999884 55777786543320 011233 33 4567 999999999999
Q ss_pred CCCCCCCeEEEEec
Q 031882 113 SHCDRGQKVTINIG 126 (151)
Q Consensus 113 ~HC~~GmKl~I~V~ 126 (151)
+||..|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999984
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=99.11 E-value=2.7e-10 Score=83.27 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=59.7
Q ss_pred cCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCceEE
Q 031882 29 GDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGTHY 106 (151)
Q Consensus 29 Gg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~~Y 106 (151)
|++.++.+.| +..++++||+|+|.+ ...|+|.... .|.+.+........| ..+++++++|.|.
T Consensus 11 g~~g~~~F~P----------~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~ 75 (123)
T 1pmy_A 11 GPGGMMVFDP----------ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYG 75 (123)
T ss_dssp ETTEEEEEES----------SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEE
T ss_pred cCCCCceEeC----------CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEE
Confidence 5444567665 357899999999999 6689998642 232222110111223 3589999999999
Q ss_pred EEeCCCCCCCCCCeEEEEecCCC
Q 031882 107 FICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 107 FiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
|+|. .||..||+..|+|.+.+
T Consensus 76 y~C~--~H~~~gM~G~I~V~~~~ 96 (123)
T 1pmy_A 76 FKCA--PHYMMGMVALVVVGDKR 96 (123)
T ss_dssp EECS--TTTTTTCEEEEEESSCC
T ss_pred EEeC--CccccCCEEEEEEcCCC
Confidence 9998 49999999999998654
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=99.07 E-value=3.8e-10 Score=82.44 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCceEE
Q 031882 29 GDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGTHY 106 (151)
Q Consensus 29 Gg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~~Y 106 (151)
|++.++.+.| +..++++||+|+|.+ ...|+|.... .|.+.+........| ..+++++++|.|.
T Consensus 11 g~~g~~~F~P----------~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~ 75 (123)
T 1paz_A 11 GAEGAMVFEP----------AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYL 75 (123)
T ss_dssp ETTEEEEEES----------SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEE
T ss_pred cCCCCceEeC----------CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEE
Confidence 5444566665 357999999999999 6689997531 232222110111123 3579999999999
Q ss_pred EEeCCCCCCCCCCeEEEEecCCC
Q 031882 107 FICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 107 FiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
|+|. .||..||+..|+|.+++
T Consensus 76 y~C~--~H~~~gM~G~I~V~~~~ 96 (123)
T 1paz_A 76 VKCT--PHYAMGMIALIAVGDSP 96 (123)
T ss_dssp EECT--TTGGGTCEEEEEESSSC
T ss_pred EEeC--CcccCCCEEEEEEcCCC
Confidence 9998 49999999999998643
No 11
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.03 E-value=2.5e-09 Score=78.47 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=63.8
Q ss_pred cceeEEEecC-CCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cC----CCeeEEEccc------------------c
Q 031882 21 AAAETYTVGD-EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TG----SHSVAEVSKA------------------D 76 (151)
Q Consensus 21 a~a~~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~----~H~V~~Vs~~------------------~ 76 (151)
++..+..||- ..++.+.| +..++++||+++|+| +. .|++...... +
T Consensus 16 ~~~~~V~v~~~~~~~~F~p----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDK----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSC----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred CcCEEEEEEecCCccEEcC----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 4445677742 23677775 357899999999888 43 7999877532 4
Q ss_pred cCcCcCCCCC--CccccCCC-cEEEe--ccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 77 YDKCRTKSPD--GEIHETSP-ANYTL--NSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 77 y~~C~~~~~~--~~~~~~G~-~~v~l--~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
|..|...+.. ......|. .++++ ++||.|+|+|.+++||. ||+..|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 5555432211 01233443 34554 58999999999999999 999999984
No 12
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.99 E-value=6.7e-10 Score=81.32 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=54.8
Q ss_pred cCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCcccc-CCCcEEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 49 SKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHE-TSPANYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~-~G~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
+..++++||+|+|.+ ...|+|...+. +.+.+....... +...++++++||.|+|+|. .||..||+..|+|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG 93 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 467999999999999 77899975421 222221101111 2346899999999999999 69999999999998
Q ss_pred CCCC
Q 031882 127 GEHS 130 (151)
Q Consensus 127 ~~~s 130 (151)
..+.
T Consensus 94 ~~~~ 97 (123)
T 3erx_A 94 DAPE 97 (123)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 6443
No 13
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.99 E-value=6e-10 Score=77.15 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=60.7
Q ss_pred eEEEecC-CCCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEccc---ccCcCcCCCCCCccccCCC-cE
Q 031882 24 ETYTVGD-EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKA---DYDKCRTKSPDGEIHETSP-AN 96 (151)
Q Consensus 24 ~~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~---~y~~C~~~~~~~~~~~~G~-~~ 96 (151)
.+..+|+ +.++.+.| +..++++||+|+|.+ . ..|+|...+.. .++.+..+... .....|. .+
T Consensus 2 ~~V~m~~~~~~~~F~P----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~-~~~~~g~~~~ 70 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVP----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDD-YLNSKGETVV 70 (98)
T ss_dssp EEEEESCTTSCCSEES----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEE-EECSTTCEEE
T ss_pred EEEEEecCCCCcEEeC----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccc-cccCCCCEEE
Confidence 3455654 34677775 357999999999999 4 58999765321 12222111000 1223444 57
Q ss_pred EEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 97 YTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 97 v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
++++++|.|.|+|.. ||..||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 899999999999995 9999999999984
No 14
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.98 E-value=1.7e-09 Score=74.66 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=60.0
Q ss_pred EEEecC-CCCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEccc---ccCcCcCC--CCCCccccCC-Cc
Q 031882 25 TYTVGD-EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKA---DYDKCRTK--SPDGEIHETS-PA 95 (151)
Q Consensus 25 ~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~---~y~~C~~~--~~~~~~~~~G-~~ 95 (151)
+..+|+ +.++.+.| +..++++||+|+|++ . ..|++...+.. ..+.+... ... .....| ..
T Consensus 2 ~v~m~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~-~~~~~G~~~ 70 (99)
T 1plc_A 2 DVLLGADDGSLAFVP----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEED-LLNAKGETF 70 (99)
T ss_dssp EEEESCTTCCSCEES----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTC-CBCSTTCEE
T ss_pred EEEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCc-cccCCCCEE
Confidence 345664 34566665 357999999999999 4 48999765431 11212110 000 112334 35
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
++++++||+|.|+|. .||..||+..|+|.
T Consensus 71 ~~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 71 EVALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 789999999999999 79999999999984
No 15
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.98 E-value=9.9e-10 Score=80.86 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=60.5
Q ss_pred cCCC-CCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCcccc-CCCcEEEeccCceE
Q 031882 29 GDEM-GWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHE-TSPANYTLNSNGTH 105 (151)
Q Consensus 29 Gg~~-GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~-~G~~~v~l~~~G~~ 105 (151)
|.+. +..|.| +..++++||+|+|.+ ...|+|...+. +.+......... +...++++++||.|
T Consensus 12 g~~g~~~~F~P----------~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y 76 (127)
T 3tu6_A 12 AADGRVMAFEP----------AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVY 76 (127)
T ss_dssp CTTSCEEEEES----------SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEE
T ss_pred CCCCcccEEeC----------CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEE
Confidence 5443 466665 467999999999999 66899976432 112111101111 22468999999999
Q ss_pred EEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 106 YFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 106 YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
+|+|. .||..||+..|.|.+++.
T Consensus 77 ~y~C~--~H~~~GM~G~I~V~~~~~ 99 (127)
T 3tu6_A 77 MYQCA--PHVGMGMIGAIVVGEPAN 99 (127)
T ss_dssp EEECT--TTGGGTCEEEEEESSCTT
T ss_pred EEEeC--CCCcCCcEEEEEECcCCC
Confidence 99999 599999999999987653
No 16
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.98 E-value=3e-09 Score=73.96 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=60.0
Q ss_pred EEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEcccccC-----c--CcCCCCCCccccCC-
Q 031882 25 TYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKADYD-----K--CRTKSPDGEIHETS- 93 (151)
Q Consensus 25 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~~y~-----~--C~~~~~~~~~~~~G- 93 (151)
+..+|.. .++.+.| +..++++||+|+|.+ . ..|++...+....+ . +.... .....|
T Consensus 5 ~V~~~~~~~~~~F~P----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~---~~~~pG~ 71 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQ---LLMSPGQ 71 (106)
T ss_dssp EEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCS---CCCSTTC
T ss_pred EEEEEecCCcceEcC----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccc---eeeCCCC
Confidence 4567643 5677775 356899999999999 4 68999754321110 0 00111 122334
Q ss_pred CcEEEe---ccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 94 PANYTL---NSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 94 ~~~v~l---~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
..++++ ++||.|+|.|. .||..||+..|+|.
T Consensus 72 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 72 STSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 367888 89999999999 89999999999996
No 17
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.94 E-value=2.4e-09 Score=78.65 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=60.2
Q ss_pred ecCCC-CCCCCCCCCCCccccccCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCce
Q 031882 28 VGDEM-GWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGT 104 (151)
Q Consensus 28 VGg~~-GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~ 104 (151)
+|++. ++.|.| +..++++||+|+|.+ ...|+|...+. +.+.+........| ..+++++++|.
T Consensus 10 ~g~~G~~~~F~P----------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~ 74 (124)
T 3ef4_A 10 KDDAGNTMVFQP----------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGL 74 (124)
T ss_dssp ECTTSCEEEEES----------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEE
T ss_pred cCCCCceeEEeC----------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeE
Confidence 44443 378776 467999999999999 88999976432 22222110111233 36899999999
Q ss_pred EEEEeCCCCCCCCCCeEEEEecC
Q 031882 105 HYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 105 ~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
|.|+|. .||..||+..|+|..
T Consensus 75 y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 75 YVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEcC--CCCcCCCEEEEEECC
Confidence 999997 699999999999987
No 18
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.92 E-value=4.4e-09 Score=72.18 Aligned_cols=87 Identities=24% Similarity=0.253 Sum_probs=59.7
Q ss_pred EEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEcccc---cCcCcCCCCCCccccC-CCcEE
Q 031882 25 TYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKAD---YDKCRTKSPDGEIHET-SPANY 97 (151)
Q Consensus 25 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~~---y~~C~~~~~~~~~~~~-G~~~v 97 (151)
+..+|++ .++.+.| +..++++||+|+|.+ . ..|++...+... .+.+.... ..... ...++
T Consensus 4 ~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~ 70 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK---LAIAPGSFYSV 70 (97)
T ss_dssp EEEEEETTTEEEEES----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC---CCCSCSCCEEE
T ss_pred EEEEeccCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc---eecCCCCEEEE
Confidence 4556642 4566665 356999999999999 4 589997764321 00111111 11223 34688
Q ss_pred EeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 98 TLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 98 ~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
++++||.|.|.|. .||..||+..|.|.
T Consensus 71 tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 71 TLGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp ECCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred EeCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 9999999999999 89999999999984
No 19
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.92 E-value=2.6e-09 Score=73.93 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=60.4
Q ss_pred EEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEcccccC----cCcCCCCC---CccccCC-
Q 031882 25 TYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKADYD----KCRTKSPD---GEIHETS- 93 (151)
Q Consensus 25 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~~y~----~C~~~~~~---~~~~~~G- 93 (151)
+..+|.. .++.+.| +..++++||+++|.+ . ..|++...+....+ .+...... ......|
T Consensus 2 ~V~~g~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~ 71 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP 71 (102)
T ss_dssp EEEESCTTCCCCEES----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence 4556753 4566664 356999999999999 4 58999865322221 11110000 0122334
Q ss_pred CcEEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 94 PANYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 94 ~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
..++++++||+|.|+|. .||..||+..|.|.
T Consensus 72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 36788999999999999 89999999999984
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.89 E-value=5.7e-09 Score=71.85 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=59.9
Q ss_pred EEEecC-CCCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEccc---ccCcCcCCCCC-CccccCC-CcE
Q 031882 25 TYTVGD-EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKA---DYDKCRTKSPD-GEIHETS-PAN 96 (151)
Q Consensus 25 ~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~---~y~~C~~~~~~-~~~~~~G-~~~ 96 (151)
+..+|+ +.+..+.| +..++++||+|+|++ . ..|++...+.. .++.+...-.. ......| ..+
T Consensus 2 ~V~~~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP----------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYS 71 (99)
T ss_dssp EEEESCTTSCCSEES----------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEE
T ss_pred EEEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEE
Confidence 345664 44667665 356899999999999 4 48999765421 12222110000 0122344 357
Q ss_pred EEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 97 YTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 97 v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
+++++||+|.|.|. .||..||+..|+|.
T Consensus 72 ~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 72 VTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 89999999999999 79999999999984
No 21
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.85 E-value=2.8e-09 Score=73.16 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=60.1
Q ss_pred eEEEecC-CCCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEccc---ccCcCcCCCCCCccccCCC-cE
Q 031882 24 ETYTVGD-EMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKA---DYDKCRTKSPDGEIHETSP-AN 96 (151)
Q Consensus 24 ~~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~---~y~~C~~~~~~~~~~~~G~-~~ 96 (151)
.+..+|+ +.++.+.| +..++++||+|+|++ . ..|++...+.. .++.+...... .....|. .+
T Consensus 2 ~~V~m~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~-~~~~pG~~~~ 70 (98)
T 2plt_A 2 ATVKLGADSGALEFVP----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDD-YLNAPGETYS 70 (98)
T ss_dssp EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEE-EECSTTCEEE
T ss_pred EEEEEecCCCCceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccc-eecCCCCEEE
Confidence 4566664 34577665 346899999999999 4 48999765321 11211100000 1223343 57
Q ss_pred EEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 97 YTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 97 v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
++++++|+|.|.|. .||..||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 71 VKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 89999999999999 69999999999984
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.77 E-value=1.9e-08 Score=69.07 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=58.8
Q ss_pred EEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee-c-CCCeeEEEccccc--CcCcCCCCCCccccCC-CcEEE
Q 031882 25 TYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-T-GSHSVAEVSKADY--DKCRTKSPDGEIHETS-PANYT 98 (151)
Q Consensus 25 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~-~~H~V~~Vs~~~y--~~C~~~~~~~~~~~~G-~~~v~ 98 (151)
+..+|.+ .++.+.| +..++++||+++|.+ . ..|++...+...- +..+..... .....| ..+++
T Consensus 4 ~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~-~~~~pG~~~~~t 72 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKG-LLFAAGESFTST 72 (98)
T ss_dssp EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEE-EECSTTCEEEEE
T ss_pred EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccc-cccCCCCEEEEE
Confidence 4556643 4677665 356899999999999 4 5899976432100 000000000 112334 35788
Q ss_pred eccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 99 LNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 99 l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
+++||+|.|.|. .||..||+..|.|.
T Consensus 73 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 73 FTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 999999999999 79999999999984
No 23
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.45 E-value=5.6e-07 Score=61.96 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=57.7
Q ss_pred EEEecCC-CCCCCCCCCCCCccccccCCeeEeCcEEEEee--cCCCeeEEEcccccCcCcC-------CCCCCccccCC-
Q 031882 25 TYTVGDE-MGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW--TGSHSVAEVSKADYDKCRT-------KSPDGEIHETS- 93 (151)
Q Consensus 25 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~~C~~-------~~~~~~~~~~G- 93 (151)
+..+|.+ .+..+.| ...++++||+|+|++ ...|++..-... ..+.. .... .....|
T Consensus 4 ~V~~~~~~~~~~f~p----------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~-~~i~pG~ 70 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQ-LMFSPGE 70 (105)
T ss_dssp EEEESCTTCCSCEES----------SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEE-EECSTTC
T ss_pred EEEEeecCCccEEeC----------CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccc-cccCCCC
Confidence 4567643 5677664 346899999999998 468998754321 11100 0000 112233
Q ss_pred CcEEEe---ccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 94 PANYTL---NSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 94 ~~~v~l---~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
..++++ +++|+|+|.|. .|+..||+..|.|.
T Consensus 71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 356777 78999999999 79999999999986
No 24
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.45 E-value=3.6e-07 Score=66.37 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=50.6
Q ss_pred cCCeeEeCcEEEEee-cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 49 SKQKFHFGDTIVFNW-TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
+..++++||+|+|.+ ...|+|...+. +-+..........| ..+++++++|.|.|+|.. |+. |+..|.|.
T Consensus 21 ~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~ 91 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG 91 (122)
T ss_dssp SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence 356899999999999 66899976431 21111110111122 368899999999999997 666 99999998
Q ss_pred CCC
Q 031882 127 GEH 129 (151)
Q Consensus 127 ~~~ 129 (151)
+.+
T Consensus 92 ~~p 94 (122)
T 2ux6_A 92 DAP 94 (122)
T ss_dssp SSC
T ss_pred CCC
Confidence 644
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.42 E-value=1e-07 Score=66.10 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=52.1
Q ss_pred cccceeEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee-cC---CCeeEEEcccccCcCcCCCCCCccccCCC
Q 031882 19 DAAAAETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW-TG---SHSVAEVSKADYDKCRTKSPDGEIHETSP 94 (151)
Q Consensus 19 ~~a~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~-~~---~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~ 94 (151)
+.+.++++.|--. .+.+.| +..++++||+++|.+ +. .|++..-+ ...+ .....|.
T Consensus 9 p~a~~~~v~V~~~-~~~F~P----------~~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~~---------~~~~pg~ 67 (100)
T 4hci_A 9 PIASAKVIEVELN-DDYFNP----------NVITIPINESTTLLLKNKGKSEHTFTIKK-LGID---------VVVESGK 67 (100)
T ss_dssp -----CCEEEEEE-TTEEES----------SEEEECTTSCEEEEEEECSSSCEEEEEGG-GTEE---------EEECTTC
T ss_pred CCCCCcEEEEEEE-CCEEeC----------CEEEECCCCEEEEEEEcCCCceEEEEEec-CCcc---------eeecCCc
Confidence 3445555555432 345554 457999999999987 42 47664311 1100 1122333
Q ss_pred ---cEEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 95 ---ANYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 95 ---~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
..+++++||.|.|.|. .||..||+..|.|+
T Consensus 68 ~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 68 EKNITVKPKSAGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp EEEEEECCCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred ceeEEEecccCceEEEECc--cccCCCCEEEEEEC
Confidence 3466789999999996 59999999999985
No 26
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.41 E-value=3.4e-07 Score=67.06 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=47.5
Q ss_pred cCCeeEeCcEEEEee--cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEEEeccCceEEEEeCCCCCCCCCCeEEEEe
Q 031882 49 SKQKFHFGDTIVFNW--TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANYTLNSNGTHYFICTVDSHCDRGQKVTINI 125 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V 125 (151)
+..++++||+|+|.+ ...|++...+...- .=.... .....| ..+++++++|+|.|.|.. |. ||+..|.|
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s---~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V 131 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG---EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIV 131 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC---CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc---cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEE
Confidence 356899999999999 34799976432210 000001 112233 357889999999999997 54 99999998
Q ss_pred c
Q 031882 126 G 126 (151)
Q Consensus 126 ~ 126 (151)
+
T Consensus 132 ~ 132 (132)
T 3c75_A 132 E 132 (132)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.39 E-value=4.3e-06 Score=61.37 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=58.8
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCeeEeC-cEEEEee--cC-------CCeeEEEcccc----------------cC
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHFG-DTIVFNW--TG-------SHSVAEVSKAD----------------YD 78 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vG-D~L~F~~--~~-------~H~V~~Vs~~~----------------y~ 78 (151)
+..|+......|.| +..+++.| |.+.|.+ .+ .|+++..+..+ |.
T Consensus 4 ~v~i~~~d~m~F~p----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v 73 (129)
T 1cuo_A 4 ETTVTSGDTMTYST----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV 73 (129)
T ss_dssp EEEEEECSSSCCSC----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred EEEEEeCCCceEcc----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence 45555555778775 45689999 9777777 33 39998775432 21
Q ss_pred cCcCCCCC--CccccCCC-cEEEec-----cCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 79 KCRTKSPD--GEIHETSP-ANYTLN-----SNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 79 ~C~~~~~~--~~~~~~G~-~~v~l~-----~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.=+..+.+ ......|. .+++++ +||+|+|+|++++|=. |||-.|+|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 11111111 01233443 455554 7899999999999999 899999986
No 28
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=98.38 E-value=6.6e-07 Score=62.61 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=57.3
Q ss_pred ccceeEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee--cCCCeeEEEcccc----cCcCcCCCCCCccccCC
Q 031882 20 AAAAETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW--TGSHSVAEVSKAD----YDKCRTKSPDGEIHETS 93 (151)
Q Consensus 20 ~a~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~----y~~C~~~~~~~~~~~~G 93 (151)
.+.+.++.|-- .+|.+.| ...++++||+|+|++ ...|+|...+..+ ++. .....|
T Consensus 15 ~~~a~~~~V~~-~~~~F~P----------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~--------~~~~pG 75 (105)
T 2ov0_A 15 EVADGAIVVDI-AKMKYET----------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKG--------PMMKKE 75 (105)
T ss_dssp GCCTTCEEEEE-ETTEESS----------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC--------CCBCTT
T ss_pred CCCCcCEEEEE-eecEEcC----------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCcccccc--------cccCCC
Confidence 34456666654 3677775 357899999999999 4479997543210 111 112233
Q ss_pred -CcEEEeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 94 -PANYTLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 94 -~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
..+++++++|.|+|.|..+ - ||+..|.|.
T Consensus 76 ~~~~~tf~~~G~y~y~C~~H--~--gM~G~i~V~ 105 (105)
T 2ov0_A 76 QAYSLTFTEAGTYDYHCTPH--P--FMRGKVVVE 105 (105)
T ss_dssp EEEEEEECSCEEEEEECSSC--T--TCEEEEEEC
T ss_pred CEEEEEeCCCEEEEEEeCCC--C--CCEEEEEEC
Confidence 3578899999999999984 2 999999884
No 29
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.36 E-value=1.4e-06 Score=66.86 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred eeEEEecCCCCCCCCCCCCCCccccccCCee-EeCcEEEEee--cC-------CCeeEEEcccccC--------------
Q 031882 23 AETYTVGDEMGWTTPPSGAAAYSTWASKQKF-HFGDTIVFNW--TG-------SHSVAEVSKADYD-------------- 78 (151)
Q Consensus 23 a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf-~vGD~L~F~~--~~-------~H~V~~Vs~~~y~-------------- 78 (151)
..++.|+...++.|.| +..++ +.||++.|.+ .+ .|+++..+..+++
T Consensus 42 ~~~V~I~~~d~m~F~P----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~ 111 (167)
T 3ay2_A 42 NCAATVESNDNMQFNT----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDY 111 (167)
T ss_dssp CCEEEEEECTTSCBSC----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTT
T ss_pred ceEEEEEeCCCceEec----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccc
Confidence 3467777666788875 34677 7899876666 33 3999876543221
Q ss_pred -cCcCCCCC--CccccCCC-cEEEec----cCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 79 -KCRTKSPD--GEIHETSP-ANYTLN----SNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 79 -~C~~~~~~--~~~~~~G~-~~v~l~----~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.=+..+.+ ......|. .+++++ ++|.|.|+|++++|=. |||..|+|.
T Consensus 112 v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 112 VKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 11111100 01233444 467765 7899999999999998 999999986
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.31 E-value=1.2e-06 Score=61.58 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=56.5
Q ss_pred cceeEEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee--cCCCeeEEEcccccCcCcCCCCCCccccCC-CcEE
Q 031882 21 AAAETYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW--TGSHSVAEVSKADYDKCRTKSPDGEIHETS-PANY 97 (151)
Q Consensus 21 a~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~--~~~H~V~~Vs~~~y~~C~~~~~~~~~~~~G-~~~v 97 (151)
..+.++.|.-. ++.+.| +..++++||+|+|.+ ...|++...+... ..-.... .....| ..++
T Consensus 17 ~~~~~~~V~~~-~~~F~P----------~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s---~~l~~g~~~~~ 81 (106)
T 1id2_A 17 VPADAVVVGIE-KMKYLT----------PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRG---EMMTKDQAYAI 81 (106)
T ss_dssp SCTTCEEEEEE-TTEESS----------SEEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEEC---CCBCTTEEEEE
T ss_pred CCCccEEEEEE-ecEEeC----------CEEEECCCCEEEEEECCCCcEEEEEeCCCC-Ccccccc---cccCCCCEEEE
Confidence 34455665543 566665 357899999999999 4479997543210 0000001 112233 3578
Q ss_pred EeccCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 98 TLNSNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 98 ~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
+++++|.|.|.|.. |. ||+..|.|.
T Consensus 82 tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 82 TFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 89999999999997 65 999999984
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.13 E-value=1.8e-05 Score=58.02 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=56.2
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCee-EeCcEEEEee--cC-------CCeeEEEcccc----------------cC
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKF-HFGDTIVFNW--TG-------SHSVAEVSKAD----------------YD 78 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf-~vGD~L~F~~--~~-------~H~V~~Vs~~~----------------y~ 78 (151)
+..|+...++.|.| +..++ +.||++.|.+ .+ .|+++..+..+ |.
T Consensus 3 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~ 72 (128)
T 2iaa_C 3 DVSIEGNDSMQFNT----------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV 72 (128)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEeCCCceEec----------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence 34455555788775 33456 6699777777 33 39998765332 21
Q ss_pred cCcCCCCC--CccccCCC-cEEEec----cCce-EEEEeCCCCCCCCCCeEEEEec
Q 031882 79 KCRTKSPD--GEIHETSP-ANYTLN----SNGT-HYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 79 ~C~~~~~~--~~~~~~G~-~~v~l~----~~G~-~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.=+..+.+ ......|. .+++++ ++|. |.|+|++|+|=. |||-.|+|.
T Consensus 73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 11111100 01234444 456665 6785 999999999999 999999986
No 32
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=98.03 E-value=1.9e-05 Score=57.89 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCee-EeCcEEEEee--cC-------CCeeEEEcccc----------------cC
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKF-HFGDTIVFNW--TG-------SHSVAEVSKAD----------------YD 78 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf-~vGD~L~F~~--~~-------~H~V~~Vs~~~----------------y~ 78 (151)
+..|+...+..|.| +..++ +.||++.|.+ .+ .|+++..+..+ |.
T Consensus 4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T 2ccw_A 4 EATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYV 73 (129)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEeCCCccEec----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccc
Confidence 45566555677775 23455 6699777776 33 39998765432 21
Q ss_pred cCcCCCCC--CccccCCC-cEEEec----cCce-EEEEeCCCCCCCCCCeEEEEec
Q 031882 79 KCRTKSPD--GEIHETSP-ANYTLN----SNGT-HYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 79 ~C~~~~~~--~~~~~~G~-~~v~l~----~~G~-~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.=+..+.+ ......|. .+++++ ++|. |.|+|++++|=. |||-.|+|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 74 KAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 11111100 01234443 456654 5665 999999999988 999999986
No 33
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=98.03 E-value=1.8e-05 Score=57.91 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=57.0
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCee-EeCcEEEEee-c-C-------CCeeEEEcccccC----------------
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKF-HFGDTIVFNW-T-G-------SHSVAEVSKADYD---------------- 78 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf-~vGD~L~F~~-~-~-------~H~V~~Vs~~~y~---------------- 78 (151)
+..|+...++.|.| +..++ +.||++.|++ + + .|+++..+..+.+
T Consensus 4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~ 73 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYL 73 (128)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTS
T ss_pred EEEEEeCCCccEec----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccc
Confidence 45566555788875 34677 7899877777 3 2 3999876433221
Q ss_pred cCcCCCCC--CccccCCC-cEEEec----cCce-EEEEeCCCCCCCCCCeEEEEec
Q 031882 79 KCRTKSPD--GEIHETSP-ANYTLN----SNGT-HYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 79 ~C~~~~~~--~~~~~~G~-~~v~l~----~~G~-~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.=+..+.+ ......|. .+++++ ++|. |.|+|++++|=. |||-.|+|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 74 KDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred ccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 10101000 01234444 456664 4676 999999999999 999999884
No 34
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.57 E-value=2.5e-05 Score=60.57 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=50.6
Q ss_pred eEeCcEEEEee----cC------CCeeEEEcccccCcCcCCCCCCccc--c--CCCcEEEe--c-----------cCc-e
Q 031882 53 FHFGDTIVFNW----TG------SHSVAEVSKADYDKCRTKSPDGEIH--E--TSPANYTL--N-----------SNG-T 104 (151)
Q Consensus 53 f~vGD~L~F~~----~~------~H~V~~Vs~~~y~~C~~~~~~~~~~--~--~G~~~v~l--~-----------~~G-~ 104 (151)
.+.||.|.+-= .+ .+.|++|++++|+.|+......... + .+...+++ . ++| .
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 45699998863 11 2789999999999998763110111 1 12223332 1 256 5
Q ss_pred EEEEeCCC-----------CCCCC-CCeEEEEecCCCCCC
Q 031882 105 HYFICTVD-----------SHCDR-GQKVTINIGGEHSSA 132 (151)
Q Consensus 105 ~YFiC~v~-----------~HC~~-GmKl~I~V~~~~s~~ 132 (151)
|||||+-. ++|.. +|||.|.|...+..+
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~~ 145 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSA 145 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC----
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCCCCC
Confidence 99999754 68987 899999998777653
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.31 E-value=0.00038 Score=53.85 Aligned_cols=100 Identities=19% Similarity=0.363 Sum_probs=59.9
Q ss_pred ccceeEEEecCCCCCCCCCC--CCCCccccccCCeeEeCcEEEEee----c-------CCCeeEEEcccccCcCcCCCCC
Q 031882 20 AAAAETYTVGDEMGWTTPPS--GAAAYSTWASKQKFHFGDTIVFNW----T-------GSHSVAEVSKADYDKCRTKSPD 86 (151)
Q Consensus 20 ~a~a~~~~VGg~~GW~~~~~--~~~~Y~~Wa~~~tf~vGD~L~F~~----~-------~~H~V~~Vs~~~y~~C~~~~~~ 86 (151)
.+.++.|.| -|....+ ...+| ...++.||.|-+-= . ....++.|++++|++|+.....
T Consensus 28 ~~~~~r~~V----yWNSsNp~F~~~~~-----~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~ 98 (177)
T 2x11_B 28 AAVADRYAV----YWNSSNPRFQRGDY-----HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKG 98 (177)
T ss_dssp --CCSEEEE----ECSTTCHHHHTSCC-----EEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTE
T ss_pred eccCccCce----EcCCCCcCccCCCc-----eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCC
Confidence 355666766 5886532 11222 35688999997753 1 2456789999999999875422
Q ss_pred ------Ccccc-CCCcEEE--ec-----------cCce-EEEEeCCC-----CCCCCCCeEEEEecCCCCC
Q 031882 87 ------GEIHE-TSPANYT--LN-----------SNGT-HYFICTVD-----SHCDRGQKVTINIGGEHSS 131 (151)
Q Consensus 87 ------~~~~~-~G~~~v~--l~-----------~~G~-~YFiC~v~-----~HC~~GmKl~I~V~~~~s~ 131 (151)
.++.. .|+.+++ +. +||. ||||++-. +-| |||+|.|.+....
T Consensus 99 ~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~~ 166 (177)
T 2x11_B 99 FKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNSC 166 (177)
T ss_dssp EEEEEECCTTCSSSSCEEEEECCSSCSSTTCCCCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTTC
T ss_pred cEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCccccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCCC
Confidence 01211 2333332 21 2565 88887522 345 9999999988764
No 36
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.25 E-value=0.00049 Score=53.48 Aligned_cols=107 Identities=15% Similarity=0.296 Sum_probs=56.4
Q ss_pred HHhhcccceeEEEecCCCCCCCCCC--CCCCccccccCCeeEeCcEEEEee----cC--------CCeeEEEcccccCcC
Q 031882 15 PAIFDAAAAETYTVGDEMGWTTPPS--GAAAYSTWASKQKFHFGDTIVFNW----TG--------SHSVAEVSKADYDKC 80 (151)
Q Consensus 15 ~~l~~~a~a~~~~VGg~~GW~~~~~--~~~~Y~~Wa~~~tf~vGD~L~F~~----~~--------~H~V~~Vs~~~y~~C 80 (151)
+++...+++..+.| -|....+ ...+ -...++.||.|-+-= .+ ...+++|++++|++|
T Consensus 21 ~~~~~~~sa~rh~V----yWNSsNp~F~~~~-----y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC 91 (182)
T 3czu_B 21 YFQGAMDAADRHTV----FWNSSNPKFRNED-----YTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLC 91 (182)
T ss_dssp --------CCEEEE----ECSTTCGGGTTSC-----CEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHT
T ss_pred HHhhhhhhccccce----EEcCCCccccCCC-----ceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhc
Confidence 34455566777776 5886532 1112 235678999997753 11 256889999999999
Q ss_pred cCCC-CC-----Ccccc-CCCcEE--Eec-----------cCc-eEEEEeC----CCCCCCCCCeEEEEecCCCCCCC
Q 031882 81 RTKS-PD-----GEIHE-TSPANY--TLN-----------SNG-THYFICT----VDSHCDRGQKVTINIGGEHSSAS 133 (151)
Q Consensus 81 ~~~~-~~-----~~~~~-~G~~~v--~l~-----------~~G-~~YFiC~----v~~HC~~GmKl~I~V~~~~s~~~ 133 (151)
+... +. .+... .|+.++ ++. ++| .||||++ .++.| ||+.|.|......+|
T Consensus 92 ~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~~~P 166 (182)
T 3czu_B 92 QPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKITHSP 166 (182)
T ss_dssp CCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC------
T ss_pred cCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCCCCC
Confidence 8653 21 01122 233222 221 256 4888885 34566 899999976554333
No 37
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.22 E-value=0.00023 Score=49.65 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCeeEeCcEEEEee-c-C--CCeeEEEcccccCcCcCCCCCCccccCCC-cEEEe--ccCceEEEEeCCCCCCC-CCCeE
Q 031882 50 KQKFHFGDTIVFNW-T-G--SHSVAEVSKADYDKCRTKSPDGEIHETSP-ANYTL--NSNGTHYFICTVDSHCD-RGQKV 121 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~-~--~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~-~~v~l--~~~G~~YFiC~v~~HC~-~GmKl 121 (151)
..+++.||+++|++ + . .|++. +.... . . .....|. ..+++ ++||.|+|.|.. ||. .+|+.
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~-i~~~~-----~---~-~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g 106 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFS-IDAFG-----V---Q-EVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG 106 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEE-EGGGT-----E---E-EEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEE-EcCCC-----c---e-eEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence 46899999999987 3 2 57764 32211 0 1 1223343 34555 899999999997 553 33999
Q ss_pred EEEec
Q 031882 122 TINIG 126 (151)
Q Consensus 122 ~I~V~ 126 (151)
.|.|.
T Consensus 107 ~i~V~ 111 (112)
T 1iby_A 107 TLNVV 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 38
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.01 E-value=0.0019 Score=47.38 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=45.2
Q ss_pred cCCeeEeCcEEEEee-cC--CCeeEEEcccccCcCcCCCCCCccccCC---CcEEEeccCceEEEEeCC---CCCCCCCC
Q 031882 49 SKQKFHFGDTIVFNW-TG--SHSVAEVSKADYDKCRTKSPDGEIHETS---PANYTLNSNGTHYFICTV---DSHCDRGQ 119 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~--~H~V~~Vs~~~y~~C~~~~~~~~~~~~G---~~~v~l~~~G~~YFiC~v---~~HC~~Gm 119 (151)
+..++.+||.++|.. +. .|+... ..... . .....| ...++++++|.|+|.|+. .+| .+|
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~--------k-~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M 127 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFHV-EGTNI--------N-VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNM 127 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEEE-TTSSC--------E-EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTC
T ss_pred CEEEEcCCCEEEEEEEeCCccceEEe-cCCCc--------e-eEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCC
Confidence 357899999999998 43 466542 21110 0 111233 346889999999999986 345 689
Q ss_pred eEEEEecC
Q 031882 120 KVTINIGG 127 (151)
Q Consensus 120 Kl~I~V~~ 127 (151)
+..|.|.+
T Consensus 128 ~g~v~V~~ 135 (135)
T 2cua_A 128 FGTIVVKE 135 (135)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999863
No 39
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=96.77 E-value=0.017 Score=42.21 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=51.8
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCeeEe-CcEEEEee--cC-------CCeeEEEcccc----------------cC
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHF-GDTIVFNW--TG-------SHSVAEVSKAD----------------YD 78 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~v-GD~L~F~~--~~-------~H~V~~Vs~~~----------------y~ 78 (151)
+..|-.+.+..|.| +..+++. |++++|.+ ++ .||++..+.++ |-
T Consensus 4 ~v~i~~~d~M~F~p----------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~ 73 (125)
T 3fsa_A 4 SVDIQGNDQMQFNT----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYL 73 (125)
T ss_dssp EEEEEBCTTSCBSC----------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEccCCcEEec----------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccC
Confidence 34444455677775 3445654 99998887 55 49998874322 21
Q ss_pred cCcCCCCC--CccccCCC-cEEEec-----cCceEEEEeCCCCCCCCCCeEEEEec
Q 031882 79 KCRTKSPD--GEIHETSP-ANYTLN-----SNGTHYFICTVDSHCDRGQKVTINIG 126 (151)
Q Consensus 79 ~C~~~~~~--~~~~~~G~-~~v~l~-----~~G~~YFiC~v~~HC~~GmKl~I~V~ 126 (151)
.=+..+.+ ......|. .+++++ ++|.|-|+|+ +|= |||-.|.|.
T Consensus 74 ~~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 74 KPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp CTTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 11111111 01234454 456665 5699999999 776 999999884
No 40
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=96.01 E-value=0.0077 Score=51.01 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=50.2
Q ss_pred cCCeeEeCcEEEEee-cC---CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCCCCCCCCeE
Q 031882 49 SKQKFHFGDTIVFNW-TG---SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDSHCDRGQKV 121 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~---~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~GmKl 121 (151)
...+++.||+++|++ +. .|++..-.......|- ...|. -.++++++|+++|.|.+++|=..||+.
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~--------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G 126 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV--------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEG 126 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB--------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee--------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEE
Confidence 357899999999888 32 4777431221111221 12232 345668899999999998888889999
Q ss_pred EEEecCCCC
Q 031882 122 TINIGGEHS 130 (151)
Q Consensus 122 ~I~V~~~~s 130 (151)
.|.|....+
T Consensus 127 ~i~V~~~~~ 135 (447)
T 2dv6_A 127 NIQVLPGNR 135 (447)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCcc
Confidence 999987654
No 41
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.57 E-value=0.021 Score=43.30 Aligned_cols=79 Identities=10% Similarity=0.249 Sum_probs=46.7
Q ss_pred CeeEeCcEEEEeec------------CCCeeEEEcccccCcCcCCCCC------Ccccc-CCCcEE--Eec---------
Q 031882 51 QKFHFGDTIVFNWT------------GSHSVAEVSKADYDKCRTKSPD------GEIHE-TSPANY--TLN--------- 100 (151)
Q Consensus 51 ~tf~vGD~L~F~~~------------~~H~V~~Vs~~~y~~C~~~~~~------~~~~~-~G~~~v--~l~--------- 100 (151)
..++.||.|-+-=+ ....+++|++++|++|+..... ..+.. .++.++ .+.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 46788999987631 1234889999999999875422 01111 123222 221
Q ss_pred --cCc-eEEEEeCCC-----CCCCCCCeEEEEecCCCCCC
Q 031882 101 --SNG-THYFICTVD-----SHCDRGQKVTINIGGEHSSA 132 (151)
Q Consensus 101 --~~G-~~YFiC~v~-----~HC~~GmKl~I~V~~~~s~~ 132 (151)
+|| .||||++-. +-| |||.|.|.+.....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~~~~ 148 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQETL 148 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC---
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCCCCC
Confidence 256 488998643 346 58888888776543
No 42
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=95.22 E-value=0.024 Score=42.04 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=48.8
Q ss_pred CeeEeCcEEEEee----c-------CCCeeEEEcccccCcCcCCCCC------Ccccc-CCCcEEE--ec----------
Q 031882 51 QKFHFGDTIVFNW----T-------GSHSVAEVSKADYDKCRTKSPD------GEIHE-TSPANYT--LN---------- 100 (151)
Q Consensus 51 ~tf~vGD~L~F~~----~-------~~H~V~~Vs~~~y~~C~~~~~~------~~~~~-~G~~~v~--l~---------- 100 (151)
..++.||.|-+-= . ....++.|++++|++|+..... ..+.. .++.+++ +.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 4678899997753 1 1456789999999999875422 01111 1333332 21
Q ss_pred -cCce-EEEEeCC-----CCCCCCCCeEEEEecCCCC
Q 031882 101 -SNGT-HYFICTV-----DSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 101 -~~G~-~YFiC~v-----~~HC~~GmKl~I~V~~~~s 130 (151)
+||. ||||++- ++-| |||+|.|.+..+
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~~ 136 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 136 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEcccC
Confidence 2565 8888752 2346 999999987764
No 43
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.75 E-value=0.032 Score=50.15 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=45.2
Q ss_pred CCeeEeCcEEEEee-cC------CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCC---CCCCC
Q 031882 50 KQKFHFGDTIVFNW-TG------SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTV---DSHCD 116 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~------~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v---~~HC~ 116 (151)
..++++||+++|.. +. .|++..-+ ...+ .....|. ..+++++||.|+|.|.. ..|
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~---------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA---------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE---------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc---------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 46889999999998 42 57764322 1100 1122333 36788999999999983 356
Q ss_pred CCCeEEEEecCC
Q 031882 117 RGQKVTINIGGE 128 (151)
Q Consensus 117 ~GmKl~I~V~~~ 128 (151)
.||+..|.|.+.
T Consensus 582 ~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 MEMRGRMLVEPK 593 (595)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 499999999864
No 44
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.27 E-value=0.067 Score=48.34 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=45.2
Q ss_pred cCCeeEeCcEEEEee-cC------CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCCCCCC-
Q 031882 49 SKQKFHFGDTIVFNW-TG------SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDSHCDR- 117 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~------~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~- 117 (151)
+..++++||.++|.. +. .|+...-+. . +......|. ..++.++||.|+|.|+. +|-.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPsl-G---------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~ 625 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNH-G---------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHAL 625 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETTT-T---------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTT
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecCC-C---------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCC
Confidence 356899999999988 52 577643121 0 101122333 46778999999999997 4554
Q ss_pred --CCeEEEEecC
Q 031882 118 --GQKVTINIGG 127 (151)
Q Consensus 118 --GmKl~I~V~~ 127 (151)
+|+..|.|++
T Consensus 626 Hs~M~G~ViVEP 637 (638)
T 3sbq_A 626 HMEMVGRMMVEP 637 (638)
T ss_dssp CTTCEEEEEEEC
T ss_pred cccceEEEEEec
Confidence 4999999975
No 45
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=94.22 E-value=0.059 Score=40.00 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=47.1
Q ss_pred eeEeCcEEEEee----cC------CCeeEEEcccccCcCcCCCCCCccc----cCCCcEEEec-------------cCce
Q 031882 52 KFHFGDTIVFNW----TG------SHSVAEVSKADYDKCRTKSPDGEIH----ETSPANYTLN-------------SNGT 104 (151)
Q Consensus 52 tf~vGD~L~F~~----~~------~H~V~~Vs~~~y~~C~~~~~~~~~~----~~G~~~v~l~-------------~~G~ 104 (151)
..+.||.|.+-= .+ ...++.|++++|+.|+......... -.++..+++. ++|.
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 345699998864 11 3668999999999998763210111 1222222221 3564
Q ss_pred -EEEEeCCC-----------CCCCC-CCeEEEEecC
Q 031882 105 -HYFICTVD-----------SHCDR-GQKVTINIGG 127 (151)
Q Consensus 105 -~YFiC~v~-----------~HC~~-GmKl~I~V~~ 127 (151)
||||++-. |-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 78888633 36776 7999999975
No 46
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=93.85 E-value=0.045 Score=40.71 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=47.3
Q ss_pred eeEeCcEEEEee----c---------CCCeeEEEcccccCcCcCCC-CC-----C------------ccccCCCcEEEec
Q 031882 52 KFHFGDTIVFNW----T---------GSHSVAEVSKADYDKCRTKS-PD-----G------------EIHETSPANYTLN 100 (151)
Q Consensus 52 tf~vGD~L~F~~----~---------~~H~V~~Vs~~~y~~C~~~~-~~-----~------------~~~~~G~~~v~l~ 100 (151)
.++.||.|-+-= . ....++.|++++|++|+... +. . +.++.-+..+.+.
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 567889997753 2 23568999999999998752 21 0 1111111222332
Q ss_pred cCc-eEEEEeCC-----------CCCCCC-CCeEEEEec
Q 031882 101 SNG-THYFICTV-----------DSHCDR-GQKVTINIG 126 (151)
Q Consensus 101 ~~G-~~YFiC~v-----------~~HC~~-GmKl~I~V~ 126 (151)
|| .||||++- +|-|.. .|||.|.|.
T Consensus 103 -pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 -SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp -TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred -CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 56 48899864 346776 899999986
No 47
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.47 E-value=0.23 Score=37.63 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=42.5
Q ss_pred cCCeeEeCcEEEEee-cC--CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCC-CCCCCCCCeE
Q 031882 49 SKQKFHFGDTIVFNW-TG--SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTV-DSHCDRGQKV 121 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~-~~--~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v-~~HC~~GmKl 121 (151)
+...+.+|+.++|.. +. .|+... ..-. +......|. ..++.++||.||+.|+. -|+--.+|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~I-P~lg---------ik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g 162 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHV-EGTN---------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG 162 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEE-TTSS---------CEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEE-CCCC---------eEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence 346788899998887 32 344432 1110 101112333 46788999999999995 3333456999
Q ss_pred EEEec
Q 031882 122 TINIG 126 (151)
Q Consensus 122 ~I~V~ 126 (151)
.|.|.
T Consensus 163 ~V~V~ 167 (168)
T 3s8f_B 163 TIVVK 167 (168)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=90.20 E-value=0.44 Score=35.00 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=44.3
Q ss_pred CeeEeCcEEEEee----c--------CCCeeEEEcccccCcCcCCC-CC-----Ccccc-CCCcEEE--ec---------
Q 031882 51 QKFHFGDTIVFNW----T--------GSHSVAEVSKADYDKCRTKS-PD-----GEIHE-TSPANYT--LN--------- 100 (151)
Q Consensus 51 ~tf~vGD~L~F~~----~--------~~H~V~~Vs~~~y~~C~~~~-~~-----~~~~~-~G~~~v~--l~--------- 100 (151)
..+++||.|-.-= . ....++.|++++|++|+... +. ..+.. .|+.+++ +.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 4678899997643 1 13567899999999998654 22 12222 2343332 21
Q ss_pred --cCce-EEEEeCCCCCCCCC--CeEEEEec
Q 031882 101 --SNGT-HYFICTVDSHCDRG--QKVTINIG 126 (151)
Q Consensus 101 --~~G~-~YFiC~v~~HC~~G--mKl~I~V~ 126 (151)
++|. ||||++ +.|=..+ +||.|.|.
T Consensus 102 EF~pG~~YY~ISt-~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISK-PIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEE-ESSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEc-cCCCCCCcceEEEEEEE
Confidence 2564 788886 3221112 68888874
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=87.13 E-value=0.88 Score=36.92 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=46.7
Q ss_pred CeeEeCcEEEEee-cC-----CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCC-----CCC
Q 031882 51 QKFHFGDTIVFNW-TG-----SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDS-----HCD 116 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~-----~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~-----HC~ 116 (151)
.+++.||+|++++ +. .|.+..-.....+.- .+. .....|. -.++.+.+|++||-|...+ |=.
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~-~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGL-TLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGG-CCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---Cce-eEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 4788999999988 53 366643221111100 111 1123333 2566688999999998764 666
Q ss_pred CCCeEEEEecCCC
Q 031882 117 RGQKVTINIGGEH 129 (151)
Q Consensus 117 ~GmKl~I~V~~~~ 129 (151)
.||.-.+.|.+..
T Consensus 142 ~Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 142 SGMAGCIMVLPRD 154 (333)
T ss_dssp TTCEEEEEEECTT
T ss_pred CCCEEEEEEccCc
Confidence 8999988887543
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=86.30 E-value=1.1 Score=36.40 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred CeeEeCcEEEEee-cC-----CCeeEEEcccccCcCcCCCCCCccccCCC-c--EEEeccCceEEEEeCCCC----CCCC
Q 031882 51 QKFHFGDTIVFNW-TG-----SHSVAEVSKADYDKCRTKSPDGEIHETSP-A--NYTLNSNGTHYFICTVDS----HCDR 117 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~-----~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~-~--~v~l~~~G~~YFiC~v~~----HC~~ 117 (151)
.+++.||+|+.++ +. .|++..=.....+ ..++. .....|. . .++++.+|++||-|...+ |=..
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~-~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKL-TNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGG-CCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcce-EEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 4778999999888 42 4666432111000 00111 1123343 2 466688999999998764 4567
Q ss_pred CCeEEEEecCCC
Q 031882 118 GQKVTINIGGEH 129 (151)
Q Consensus 118 GmKl~I~V~~~~ 129 (151)
||.-.+.|.+..
T Consensus 143 Gl~G~liV~~~~ 154 (336)
T 1oe1_A 143 GMSGTLMVLPRD 154 (336)
T ss_dssp TCEEEEEEECTT
T ss_pred CCeEEEEEecCc
Confidence 999999887543
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=84.69 E-value=1.1 Score=36.53 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=45.5
Q ss_pred CCeeEeCcEEEEee-cC-----CCeeEEEcccccCcCcCCCCCCccccCCC-c--EEEeccCceEEEEeCCC---CCCCC
Q 031882 50 KQKFHFGDTIVFNW-TG-----SHSVAEVSKADYDKCRTKSPDGEIHETSP-A--NYTLNSNGTHYFICTVD---SHCDR 117 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~-----~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~-~--~v~l~~~G~~YFiC~v~---~HC~~ 117 (151)
..+++.||++++++ +. .|++..=-....|. .+.......|. . .++.+.+|++||-|... .|=..
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG----~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~ 146 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG----GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN 146 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG----GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC----CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhc
Confidence 35789999999988 43 45553210000110 01001122333 2 45668899999999763 35567
Q ss_pred CCeEEEEecCCCC
Q 031882 118 GQKVTINIGGEHS 130 (151)
Q Consensus 118 GmKl~I~V~~~~s 130 (151)
||.-.+.|.+...
T Consensus 147 Gl~G~~iV~~~~~ 159 (327)
T 1kbv_A 147 GMYGLILVEPKEG 159 (327)
T ss_dssp TCEEEEEEECTTC
T ss_pred ceEEEEEEecCCC
Confidence 9999999987543
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=82.95 E-value=0.91 Score=38.17 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred CCeeEeCcEEEEee-cC-----CCeeEEEcccccCcCcCCCCCCccccCCC-c--EEEeccCceEEEEeCC---CCCCCC
Q 031882 50 KQKFHFGDTIVFNW-TG-----SHSVAEVSKADYDKCRTKSPDGEIHETSP-A--NYTLNSNGTHYFICTV---DSHCDR 117 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~-----~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~-~--~v~l~~~G~~YFiC~v---~~HC~~ 117 (151)
..+++.||++++++ +. .|++..=-....+. .... .....|. . .++.+.+|++||-|-. ..|=..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~-~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAES-SFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGG-CCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCcc-EEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 35788999999988 44 45554210000010 0000 1122333 2 4666789999999943 346668
Q ss_pred CCeEEEEecCCCC
Q 031882 118 GQKVTINIGGEHS 130 (151)
Q Consensus 118 GmKl~I~V~~~~s 130 (151)
||...+.|.+..+
T Consensus 137 Gl~G~~iv~~~~~ 149 (442)
T 2zoo_A 137 GMYGLILVEPKEG 149 (442)
T ss_dssp TCEEEEEEECTTC
T ss_pred ccEEEEEEeCCCC
Confidence 9999999886543
No 53
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=77.24 E-value=3.3 Score=32.96 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=46.5
Q ss_pred CeeEeCcEEEEee-c---CCCeeEEEcccccCcCcCCCC-CCccccCCC---cEEEeccCceEEEEeCCC---CCCCCCC
Q 031882 51 QKFHFGDTIVFNW-T---GSHSVAEVSKADYDKCRTKSP-DGEIHETSP---ANYTLNSNGTHYFICTVD---SHCDRGQ 119 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~---~~H~V~~Vs~~~y~~C~~~~~-~~~~~~~G~---~~v~l~~~G~~YFiC~v~---~HC~~Gm 119 (151)
.+++.||+++.++ + ..|++..=--. ...-+-... .......|. -.++.+.+|++||-|-.. .|=..||
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~-~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 146 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVH-RATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGL 146 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCC-CGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEecccc-ccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcC
Confidence 5789999999887 3 23444321000 000010000 001122333 256678899999999876 3556899
Q ss_pred eEEEEecCCCCCC
Q 031882 120 KVTINIGGEHSSA 132 (151)
Q Consensus 120 Kl~I~V~~~~s~~ 132 (151)
.-.+.|.+..+.+
T Consensus 147 ~G~liV~~~~~~~ 159 (288)
T 3gdc_A 147 YGGFIVEPKEGRP 159 (288)
T ss_dssp EEEEEEECSSCCC
T ss_pred eEEEEEeCCccCC
Confidence 9999998776544
No 54
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=76.38 E-value=3.6 Score=33.24 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=45.6
Q ss_pred CeeEeCcEEEEee-cC-----CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCC----CCCC
Q 031882 51 QKFHFGDTIVFNW-TG-----SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDS----HCDR 117 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~-----~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~----HC~~ 117 (151)
.+++.||++++++ +. .|.+..=.....+ + ..+. .....|. -.++++.+|++||-|...+ |=..
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~-~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGAL-TQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGG-CCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-Cccc-eEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 4678999999988 53 3665431111000 0 0111 1123333 2566778999999998764 5568
Q ss_pred CCeEEEEecCCC
Q 031882 118 GQKVTINIGGEH 129 (151)
Q Consensus 118 GmKl~I~V~~~~ 129 (151)
||.-.+.|.+..
T Consensus 149 Gl~G~~iV~~~~ 160 (340)
T 2bw4_A 149 GMNGAIMVLPRD 160 (340)
T ss_dssp TCEEEEEEECTB
T ss_pred cCEEEEEEccCc
Confidence 998888887643
No 55
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=74.94 E-value=3.5 Score=36.24 Aligned_cols=73 Identities=14% Similarity=0.313 Sum_probs=49.1
Q ss_pred CCeeEeCcEEEEee-cCC--CeeEEE-cccccCcCcCCCCCCccccCCC--cEEEeccCceEEEEeCCCCCCCCCC-eEE
Q 031882 50 KQKFHFGDTIVFNW-TGS--HSVAEV-SKADYDKCRTKSPDGEIHETSP--ANYTLNSNGTHYFICTVDSHCDRGQ-KVT 122 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~~--H~V~~V-s~~~y~~C~~~~~~~~~~~~G~--~~v~l~~~G~~YFiC~v~~HC~~Gm-Kl~ 122 (151)
+.-++.|-.|+|.= ... .-++.+ +.++...|+.+.- .+.+=+ ....++ +|.|||..+...-|++|- |+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 487 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPF---SFHAFELGKMYSVE-SGDYFMTASTTELCNDNNLRIH 487 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCC---ccCcccccceEecC-CCceEecCChHHHHhCCceeEE
Confidence 34688899999955 322 223333 5556677987652 232222 334444 899999999999999998 999
Q ss_pred EEec
Q 031882 123 INIG 126 (151)
Q Consensus 123 I~V~ 126 (151)
|.|.
T Consensus 488 ~~~~ 491 (491)
T 3l6w_A 488 VHVD 491 (491)
T ss_pred EEeC
Confidence 9884
No 56
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=68.68 E-value=6.8 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.9
Q ss_pred ccCceEEEEeCCCCCCCCCCeEEEEecCCCCCCC
Q 031882 100 NSNGTHYFICTVDSHCDRGQKVTINIGGEHSSAS 133 (151)
Q Consensus 100 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s~~~ 133 (151)
+.||.++|-|-+..|=..||...+.|.+....+|
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~~P 312 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 312 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCS
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCCCC
Confidence 5799999999999999999999999987665443
No 57
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=65.48 E-value=7.1 Score=31.73 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=26.3
Q ss_pred EEEeccCceEEEEeCCCC--CCC-CCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDS--HCD-RGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~--HC~-~GmKl~I~V~~~~s 130 (151)
.++++.+|++||-|.... |=. .||.-.+.|.+..+
T Consensus 92 ~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~ 129 (339)
T 2zwn_A 92 KFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQP 129 (339)
T ss_dssp EEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEECSSC
T ss_pred EEECCCCEEEEEEecCCchhhhhcCCceEeEEecCCCc
Confidence 567788999999997654 334 89988888876544
No 58
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=64.47 E-value=1.1 Score=30.60 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=14.5
Q ss_pred ccCCeeEeCcEEEEee
Q 031882 48 ASKQKFHFGDTIVFNW 63 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~ 63 (151)
+..+..+.||.|+|++
T Consensus 73 v~~~~L~~GD~lvF~~ 88 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIY 88 (104)
T ss_dssp HHHHTCCTTCEEEEEE
T ss_pred HHHcCCCCCCEEEEEE
Confidence 5678899999999999
No 59
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=62.85 E-value=4 Score=32.96 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=29.7
Q ss_pred EEEeccCceEEEEeCCCCCC-CCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHC-DRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 129 (151)
.++.+.+|.++|.|-...|+ +.||.-.++|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 56778899999999998999 99999999997654
No 60
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=62.31 E-value=13 Score=32.14 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=27.9
Q ss_pred EEEe-ccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTL-NSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
++++ +.+|++||-|-...|=..||.-.+.|.+..
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 4553 568999999998888888999999998654
No 61
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=57.05 E-value=5.1 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred EEEeccCceEEEEeCCCCCC-CCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHC-DRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 129 (151)
.++++++|.|+|.|....|+ ..||...+.|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 56778899999999988888 89999999997544
No 62
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=55.83 E-value=4.1 Score=32.35 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=28.1
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
.++.+.||.+.|.|-+..|=+.||...++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45568899999999999999999999999864
No 63
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=53.27 E-value=3 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=18.0
Q ss_pred ccCCeeEeCcEEEEee-cCCCeeEEE
Q 031882 48 ASKQKFHFGDTIVFNW-TGSHSVAEV 72 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~-~~~H~V~~V 72 (151)
+..+.+++||.++|.+ ...--+.+|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 6678999999999999 432224444
No 64
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=52.99 E-value=26 Score=30.26 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=29.8
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
+++++.+|++||=|-...+=..||.-.+.|.+..+
T Consensus 92 ~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~ 126 (552)
T 1aoz_A 92 NFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQG 126 (552)
T ss_dssp EEECCSCEEEEEEECSTTTGGGTCEEEEEEECCTT
T ss_pred EEECCCCEEEEEEECchhHHhccCeeeEEEeCCcc
Confidence 56778899999999988888889999999987643
No 65
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=50.91 E-value=9.1 Score=30.90 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=25.4
Q ss_pred EEEeccCceEEEEeCCCCC-C--CCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSH-C--DRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~H-C--~~GmKl~I~V~~~~s 130 (151)
.++.+.+|++||-|..... . ..||.-.+.|.+..+
T Consensus 91 ~f~~~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~ 128 (318)
T 3g5w_A 91 KFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNP 128 (318)
T ss_dssp EEECCSCEEEEEECCSSHHHHHHHSCCEEEEEEECSSC
T ss_pred EEEcCCCEEEEEEccCChhhhhccCCCEEEEEEcCCCc
Confidence 5677889999998886421 1 269998888876543
No 66
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=50.74 E-value=1.8 Score=34.90 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCeeEeCcEEEEee-cC-CC-eeEEE--cccccCcCcC--CCCCCccccCCC---cEEEeccCceEEEEeCCCCCCCCCC
Q 031882 50 KQKFHFGDTIVFNW-TG-SH-SVAEV--SKADYDKCRT--KSPDGEIHETSP---ANYTLNSNGTHYFICTVDSHCDRGQ 119 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~-~H-~V~~V--s~~~y~~C~~--~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~Gm 119 (151)
..+++.||+++|+. +. .. ....+ ....++. +. .+.+ ....|. ..++.+.+|.+.|.|-+..|-..||
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv--~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM 292 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAI--TLVSATSTTANMTVSPEGRWTIASLIPRHFQAGM 292 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCC--CEETTCCBC--------CCCCCBCCSTTTGGGTC
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceE--EECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCC
Confidence 45788999999988 32 21 22212 1112211 00 0111 112232 3566788999999999999999999
Q ss_pred eEEEEecCC
Q 031882 120 KVTINIGGE 128 (151)
Q Consensus 120 Kl~I~V~~~ 128 (151)
...+.|.+.
T Consensus 293 ~~~~~V~~~ 301 (306)
T 1sdd_A 293 QAYIDIKNC 301 (306)
T ss_dssp BCCC-----
T ss_pred eEEEEEecC
Confidence 999888754
No 67
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=49.00 E-value=17 Score=28.17 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=39.4
Q ss_pred CeeEeCcEEEEee-cC--CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCCCCCC---CCeE
Q 031882 51 QKFHFGDTIVFNW-TG--SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDSHCDR---GQKV 121 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~--~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~---GmKl 121 (151)
..+.+|+.++|.- +. .|+...-+.. +....-.|. ..++.+++|.||..|+. .|.. .|++
T Consensus 43 l~lP~g~~V~~~lTS~DViHSF~IP~lg----------vK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~ 110 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNSVMHSFFIPRLG----------SQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKF 110 (205)
T ss_dssp EEEETTSCEEEEEEESSSCEEEEEGGGT----------EEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCE
T ss_pred EEEeCCCEEEEEEecCCceeeEEecccC----------cEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceE
Confidence 4677899998888 32 3444321110 100111232 35677999999999985 4554 4999
Q ss_pred EEEec
Q 031882 122 TINIG 126 (151)
Q Consensus 122 ~I~V~ 126 (151)
.|.|.
T Consensus 111 ~v~vv 115 (205)
T 1cyx_A 111 KAIAT 115 (205)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99987
No 68
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=48.51 E-value=23 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=29.6
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
.++++.+|++||-|-...|=..||.-.+.|.+..+
T Consensus 126 ~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~~ 160 (559)
T 2q9o_A 126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPAS 160 (559)
T ss_dssp EEECCSCEEEEEEECSTTGGGGTCEEEEEEECCCS
T ss_pred EEECCCCEEEEEEEcccchhcCCceEEEEecCCCc
Confidence 57778899999999988787889999999986543
No 69
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=48.49 E-value=16 Score=29.87 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=25.7
Q ss_pred cEEEeccCceEEEEeCCCCCCCC---CCeEEEEecCCC
Q 031882 95 ANYTLNSNGTHYFICTVDSHCDR---GQKVTINIGGEH 129 (151)
Q Consensus 95 ~~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~~ 129 (151)
..++.++||.||..|+. .|.. .|++.|.|.+..
T Consensus 231 ~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~~ 266 (298)
T 3hb3_B 231 LWFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQE 266 (298)
T ss_dssp EEEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECHH
T ss_pred EEEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcHH
Confidence 35788999999999985 4554 599999987543
No 70
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=48.09 E-value=6.7 Score=26.36 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=10.4
Q ss_pred CeeEeCcEEEEe
Q 031882 51 QKFHFGDTIVFN 62 (151)
Q Consensus 51 ~tf~vGD~L~F~ 62 (151)
+.|++||.|+|.
T Consensus 36 r~~~vGD~l~l~ 47 (83)
T 3iuw_A 36 RNFQVGDILILE 47 (83)
T ss_dssp SCCCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 459999999996
No 71
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=47.80 E-value=27 Score=30.25 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.5
Q ss_pred EEEec-cCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTLN-SNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~-~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
.++++ .+|++||-|-...|=..||.-.+.|.+...
T Consensus 92 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~ 127 (534)
T 1zpu_A 92 NFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF 127 (534)
T ss_dssp EEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTTC
T ss_pred EEEeCccceeEEEEEcCcccccCcceeeEEeCCCCC
Confidence 56666 889999999988888889999999987653
No 72
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=47.66 E-value=33 Score=30.30 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=29.0
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
+++++.+|++||-|-...+=..|+.-.+.|.++.
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~ 189 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPA 189 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCcc
Confidence 5777889999999998877778999999998654
No 73
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=47.49 E-value=31 Score=29.65 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=28.4
Q ss_pred EEEe-ccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTL-NSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
++++ +.+|++||-|-...+=..||.-.+.|.++..
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~ 132 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPND 132 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTC
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCccc
Confidence 4666 5789999999988777789999999976543
No 74
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=46.77 E-value=12 Score=30.21 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=29.2
Q ss_pred EEEeccCceEEEEeCCCCCC-CCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHC-DRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~s 130 (151)
.++.+.+|.+++.|....|| ..||...+.+...+.
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 56678899999999999998 789988888876553
No 75
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=46.43 E-value=18 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=25.0
Q ss_pred cEEEeccCceEEEEeCCCCCCCCC---CeEEEEecC
Q 031882 95 ANYTLNSNGTHYFICTVDSHCDRG---QKVTINIGG 127 (151)
Q Consensus 95 ~~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 127 (151)
..++.++||.||..|+. .|..| |++.|.|.+
T Consensus 213 ~~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 213 LWFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 36788999999999985 56655 999988875
No 76
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=44.33 E-value=37 Score=29.21 Aligned_cols=35 Identities=9% Similarity=0.303 Sum_probs=28.3
Q ss_pred EEEe-ccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTL-NSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
++++ +.+|++||-|-...+=..||.-.+.|.+...
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~ 131 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPND 131 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTC
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCcc
Confidence 4566 5689999999988777789999999976543
No 77
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=43.25 E-value=18 Score=28.25 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=24.5
Q ss_pred EEEeccCceEEEEeCCCCCCCCC---CeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRG---QKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 127 (151)
.++.++||.||..|+. .|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5678999999999985 57665 899888875
No 78
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=42.60 E-value=9.5 Score=30.53 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=30.0
Q ss_pred ccCceEEEEeCCCCCCCCCCeEEEEecCCCCCCCc
Q 031882 100 NSNGTHYFICTVDSHCDRGQKVTINIGGEHSSASS 134 (151)
Q Consensus 100 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s~~~~ 134 (151)
+.||.+.|-|-+..|=+.||...++|.+.+.+.|.
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~~P~ 294 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGTMPA 294 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCCT
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCCCCC
Confidence 45899999999999999999999999987766553
No 79
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=42.49 E-value=11 Score=29.53 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.4
Q ss_pred cCceEEEEeCCCCCCCCCCeEEEEecCCCCCCC
Q 031882 101 SNGTHYFICTVDSHCDRGQKVTINIGGEHSSAS 133 (151)
Q Consensus 101 ~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s~~~ 133 (151)
.||.++|-|-+..|=..||...+.|.+...+-|
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~~~p 271 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 271 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTSCCT
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCCCCC
Confidence 589999999999999999999999987765433
No 80
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=41.06 E-value=16 Score=34.58 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=49.4
Q ss_pred CCeeEeCcEEEEee-c-C----CCeeEEEc------ccccCcCcCCCCCCccccCCCcEEEeccCceEEEEeCCCCCCCC
Q 031882 50 KQKFHFGDTIVFNW-T-G----SHSVAEVS------KADYDKCRTKSPDGEIHETSPANYTLNSNGTHYFICTVDSHCDR 117 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~-~----~H~V~~Vs------~~~y~~C~~~~~~~~~~~~G~~~v~l~~~G~~YFiC~v~~HC~~ 117 (151)
..++..||+|+.+- . + .|++.+-. ...++.|.... ..+-...++.+.+|.+++-|-+..|=..
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~p-----g~~~t~~~~~~~~Gt~~~h~h~~~~~~~ 707 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFP-----QTSLTLHMWPDTEGTFNVECLTTDHYTG 707 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECT-----TCEEEEEECCCSCEEEEEEECSHHHHHT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeecC-----CceEEEEEecCCCeEEEEecCCCcccCC
Confidence 47899999999887 3 2 35664421 11233343221 1122235666789999999999998899
Q ss_pred CCeEEEEecCC
Q 031882 118 GQKVTINIGGE 128 (151)
Q Consensus 118 GmKl~I~V~~~ 128 (151)
||+..+.|.+.
T Consensus 708 Gm~g~~~V~~~ 718 (1065)
T 2j5w_A 708 GMKQKYTVNQC 718 (1065)
T ss_dssp TCEEEEEEECC
T ss_pred CcEEEEEEcCC
Confidence 99999999765
No 81
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=40.87 E-value=31 Score=31.32 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=29.3
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
.++.+.||.+.|-|-...|=..||.-.+.|...+.
T Consensus 298 ~~~~~~pG~w~~hCH~~~H~~~GM~~~~~V~~~~~ 332 (742)
T 2r7e_A 298 QTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPE 332 (742)
T ss_dssp EECCCSCSEECCCCCSSSSSTTSCCBCEEECCCCC
T ss_pred EEEeCCCeeEEEEeCChhHHhCCCeEEEEEecCCc
Confidence 45668899999999999999999988888875543
No 82
>1kzq_A Major surface antigen P30; SAG1, parasite invasion, MAD, immune system; 1.70A {Toxoplasma gondii} SCOP: b.6.2.1 b.6.2.1 PDB: 1ynt_F
Probab=38.48 E-value=12 Score=30.43 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=12.5
Q ss_pred EEEEeCCCCCCCC-CCeEEEEecCCCCCCCch-----HHHHHHHHHHHHhhc
Q 031882 105 HYFICTVDSHCDR-GQKVTINIGGEHSSASSL-----AATFFTLLVSLLSSY 150 (151)
Q Consensus 105 ~YFiC~v~~HC~~-GmKl~I~V~~~~s~~~~~-----~~~~~~~~~~~~~~~ 150 (151)
..+-|.-... .. -=++.|+|.+..+++.+. ..+++++++||.++.
T Consensus 234 ~~~gC~~~~~-~~~~C~V~VtV~a~~ssa~s~a~~~~~~~~~~~~~g~~~~~ 284 (289)
T 1kzq_A 234 VIIGCTGGSP-EKHHCTVKLEFAGAAGSAKSAAGTASHVSIFAMVIGLIGSI 284 (289)
T ss_dssp EEEEEEECSS-SBEEEEEEEEECC----------------------------
T ss_pred EEEEecCCCC-CCCccEEEEEEEecCCCcccchhhhhHHHHHHHHHHHHHhh
Confidence 5566653322 00 027999998887764332 334566667887664
No 83
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=37.44 E-value=41 Score=26.97 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=28.8
Q ss_pred EEEeccCceEEEEeCCCCCCC------CCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCD------RGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~------~GmKl~I~V~~~~s 130 (151)
.+..+.||.+.|-|-+..|-. .||...|.+...+.
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~~ 279 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVGI 279 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTCS
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCCC
Confidence 466788999999999999998 57888888877653
No 84
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=37.20 E-value=26 Score=29.14 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=27.9
Q ss_pred EEEeccCceEEEEeCCCCCC-CCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHC-DRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 129 (151)
.++++++|.|++.|....|+ ..||...+.|...+
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 46778899999999988887 78998888886544
No 85
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=35.86 E-value=18 Score=23.57 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=12.3
Q ss_pred CCeeEeCcEEEEee
Q 031882 50 KQKFHFGDTIVFNW 63 (151)
Q Consensus 50 ~~tf~vGD~L~F~~ 63 (151)
-..+++||.|.|.+
T Consensus 51 l~~lk~Gd~V~F~~ 64 (80)
T 2qcp_X 51 MSEIKTGDKVAFNF 64 (80)
T ss_dssp ECCCCTTCEEEEEE
T ss_pred hhcCCCCCEEEEEE
Confidence 35799999999999
No 86
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=35.76 E-value=18 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=13.3
Q ss_pred ccCCeeEeCcEEEEee
Q 031882 48 ASKQKFHFGDTIVFNW 63 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~ 63 (151)
+.-..+++||.|.|.+
T Consensus 57 ~~l~~lk~Gd~V~F~~ 72 (88)
T 2vb2_X 57 TKMSEIKTGDKVAFNF 72 (88)
T ss_dssp CEECCCCTTCEEEEEE
T ss_pred hhhhcCCCCCEEEEEE
Confidence 3345799999999999
No 87
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=34.36 E-value=70 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=21.9
Q ss_pred cCceEEEEeCCCCC------CCCCCeEEEEecCCCCC
Q 031882 101 SNGTHYFICTVDSH------CDRGQKVTINIGGEHSS 131 (151)
Q Consensus 101 ~~G~~YFiC~v~~H------C~~GmKl~I~V~~~~s~ 131 (151)
..|.+||-|-+.+. =..||.-.+.|.+..+.
T Consensus 114 ~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~ 150 (313)
T 3tas_A 114 SAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV 150 (313)
T ss_dssp SCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCB
T ss_pred CceEEEEeecCcccccchhhhhccccCceEeeccccc
Confidence 45889998876543 23699988888876543
No 88
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=32.42 E-value=33 Score=28.40 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=29.4
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecCCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGGEHS 130 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~s 130 (151)
.+..+.||.++|-|-...|=..||...+.|...+.
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~~ 436 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKN 436 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCSC
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCCC
Confidence 46678899999999998898889999999976543
No 89
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=32.36 E-value=24 Score=29.00 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=40.8
Q ss_pred CCeeEeCcEEEEee-cC--CCeeEEEcccccCcCcCCCCCCccccCCC---cEEEeccCceEEEEeCCCCCCCC---CCe
Q 031882 50 KQKFHFGDTIVFNW-TG--SHSVAEVSKADYDKCRTKSPDGEIHETSP---ANYTLNSNGTHYFICTVDSHCDR---GQK 120 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~~--~H~V~~Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~---GmK 120 (151)
...+.+|..++|.- +. -|+-.. ..-. +....-.|. ..++.++||.||..|+. .|.. .|+
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~I-P~lg---------~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~ 219 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFI-PRLG---------SQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMK 219 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEE-GGGT---------EEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCC
T ss_pred eEEEeCCCEEEEEEEeCCccceeee-cccC---------cEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhcc
Confidence 45788999999988 32 344432 1110 000111232 35788999999999985 5665 489
Q ss_pred EEEEec
Q 031882 121 VTINIG 126 (151)
Q Consensus 121 l~I~V~ 126 (151)
+.|.|.
T Consensus 220 ~~v~vv 225 (315)
T 1fft_B 220 FKAIAT 225 (315)
T ss_dssp EECCBC
T ss_pred ceEEEe
Confidence 988887
No 90
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=32.10 E-value=11 Score=26.51 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=10.7
Q ss_pred CeeEeCcEEEEee
Q 031882 51 QKFHFGDTIVFNW 63 (151)
Q Consensus 51 ~tf~vGD~L~F~~ 63 (151)
+.+++||+|+|+-
T Consensus 33 ~~i~vGD~I~f~~ 45 (113)
T 1xne_A 33 KDIKRGDKIIFND 45 (113)
T ss_dssp TTCCTTCEEEETT
T ss_pred hccCCCCEEEEcc
Confidence 4679999999954
No 91
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=31.26 E-value=1.5e+02 Score=23.35 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=21.9
Q ss_pred cCceEEEEeCCCCC------CCCCCeEEEEecCCCCCC
Q 031882 101 SNGTHYFICTVDSH------CDRGQKVTINIGGEHSSA 132 (151)
Q Consensus 101 ~~G~~YFiC~v~~H------C~~GmKl~I~V~~~~s~~ 132 (151)
.+|++||-|-..+. =..||.-.+.|.+..+..
T Consensus 130 ~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~~~ 167 (299)
T 3t9w_A 130 TAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGDLL 167 (299)
T ss_dssp CCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCCC
T ss_pred CceeEEEecCCcccccchhhhcccccceEEEecccccC
Confidence 45999998865332 124999999998766543
No 92
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=30.83 E-value=55 Score=27.88 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.3
Q ss_pred EEEe-ccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 96 NYTL-NSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
++++ +.+|++||=|-...|=..||.-.+.|.+..
T Consensus 96 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 130 (503)
T 1hfu_A 96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN 130 (503)
T ss_dssp EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCccEEEEecchhhhhCcceeeEEEcCCC
Confidence 3443 468999999998888788999999998654
No 93
>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, PSI, PR structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1
Probab=29.83 E-value=1.6 Score=30.73 Aligned_cols=80 Identities=11% Similarity=0.208 Sum_probs=50.2
Q ss_pred CeeEeCcEEEEeecCCCeeEEEcccccCcCcCCCC---CCccccCCCcEEEeccCceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 51 QKFHFGDTIVFNWTGSHSVAEVSKADYDKCRTKSP---DGEIHETSPANYTLNSNGTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 51 ~tf~vGD~L~F~~~~~H~V~~Vs~~~y~~C~~~~~---~~~~~~~G~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
+..+-||+|+-+-+..-||..++.+.|..=.-... .+..+..++..+++..+|..|.+=...+|+. .-+-.|+|.+
T Consensus 14 ~~l~~Gd~V~V~cs~~~nVrLmd~~Nf~~~~~g~~~~~~GG~~~~~P~~itVP~sG~W~vvID~~g~~~-~~~~SI~vip 92 (104)
T 2b1y_A 14 KELRAGTTLEISLSSVNNVRLMTGANFQRFTELLDFKYLGGVAKKSPIRIAVPETMHWHLIIDAEGHSG-LAESSVKMLP 92 (104)
T ss_dssp CCCCTTCCCCCCCSSSCCCCCCCHHHHHHHHHHTTCCCSCCCCCSSSCCCCCCSSSCCCCCCCCTTSSS-CCCCCCCCCC
T ss_pred hhccCCCEEEEEeCCceeEEEcCchhhhhhhccCceeEeccccccCCEEEECCCCceEEEEEecCCcCC-cceeeEEEec
Confidence 36778999988777778888777666543221110 0012234455677777787777667677776 5677777776
Q ss_pred CCCC
Q 031882 128 EHSS 131 (151)
Q Consensus 128 ~~s~ 131 (151)
++.+
T Consensus 93 a~~~ 96 (104)
T 2b1y_A 93 AQPQ 96 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 94
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=29.43 E-value=59 Score=25.31 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=22.6
Q ss_pred CceEEEEeCCCC------CCCCCCeEEEEecCCCCCC
Q 031882 102 NGTHYFICTVDS------HCDRGQKVTINIGGEHSSA 132 (151)
Q Consensus 102 ~G~~YFiC~v~~------HC~~GmKl~I~V~~~~s~~ 132 (151)
+|.+||-|-..+ |=..||.-.+.|.+..+..
T Consensus 109 ~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~~ 145 (276)
T 3kw8_A 109 AGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDVL 145 (276)
T ss_dssp CEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCCC
T ss_pred CEEEEEecCccccccchhhhhCccEEEEEEecCCCcc
Confidence 478889998754 3456999999988776543
No 95
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=29.33 E-value=24 Score=31.13 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=28.2
Q ss_pred EEEeccCceEEEEeCCCCCCCCCCeEEEEecC
Q 031882 96 NYTLNSNGTHYFICTVDSHCDRGQKVTINIGG 127 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 127 (151)
.+..+.||.+.|-|-+..|-..||...+.|.+
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45678899999999999999999999999964
No 96
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=28.94 E-value=27 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.4
Q ss_pred ccCCeeEeCcEEEEee
Q 031882 48 ASKQKFHFGDTIVFNW 63 (151)
Q Consensus 48 a~~~tf~vGD~L~F~~ 63 (151)
+.-..+++||.|.|.+
T Consensus 43 ~~l~~lk~Gd~V~F~~ 58 (82)
T 2l55_A 43 GLPQGLKAGDRVAFSF 58 (82)
T ss_dssp CCCSSCSTTCEEEEEE
T ss_pred hHhhcCCCCCEEEEEE
Confidence 3346899999999999
No 97
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=28.52 E-value=35 Score=28.77 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=44.0
Q ss_pred CeeEeCcEEEEee-cC---CCeeEE----EcccccCcCcCCCCCCccccCCC---cEEEecc-CceEEEEeCCC----CC
Q 031882 51 QKFHFGDTIVFNW-TG---SHSVAE----VSKADYDKCRTKSPDGEIHETSP---ANYTLNS-NGTHYFICTVD----SH 114 (151)
Q Consensus 51 ~tf~vGD~L~F~~-~~---~H~V~~----Vs~~~y~~C~~~~~~~~~~~~G~---~~v~l~~-~G~~YFiC~v~----~H 114 (151)
.+++.||+|+.++ +. .+++.- ++. ..|. .+..++ ..|. -.++++. +|++||=|-.. .|
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~-~~DG-~~~~~i----~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q 125 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPG-PLMG-GPARMM----SPNADWAPVLPIRQNAATLWYHANTPNRTAQQ 125 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCG-GGSC-SGGGCB----CTTCEECCEEECCSCSEEEEEEECCTTTHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCC-CCCC-CCcCcC----CCCCeEEEEEEcCCCCcceEEecCCCCchhhh
Confidence 3678999999988 43 333321 111 1111 001122 2333 3677776 89999999873 35
Q ss_pred CCCCCeEEEEecCCC
Q 031882 115 CDRGQKVTINIGGEH 129 (151)
Q Consensus 115 C~~GmKl~I~V~~~~ 129 (151)
=..||--.+.|.+..
T Consensus 126 ~~~Gl~G~liV~~~~ 140 (451)
T 2uxt_A 126 VYNGLAGMWLVEDEV 140 (451)
T ss_dssp HHTTCEEEEEEECHH
T ss_pred HhhcceEEEEEecCc
Confidence 558999999988654
No 98
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=28.06 E-value=65 Score=26.83 Aligned_cols=81 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred eeEeCcEEEEee-cCCCeeEEE-cccccCcCcCCCCCCccccCCCc---EEEe--ccCceEEEEeCCCC----CCCCCCe
Q 031882 52 KFHFGDTIVFNW-TGSHSVAEV-SKADYDKCRTKSPDGEIHETSPA---NYTL--NSNGTHYFICTVDS----HCDRGQK 120 (151)
Q Consensus 52 tf~vGD~L~F~~-~~~H~V~~V-s~~~y~~C~~~~~~~~~~~~G~~---~v~l--~~~G~~YFiC~v~~----HC~~GmK 120 (151)
+++.||+|+.++ +.-..-..+ -..-...-...++. .....|.. ++++ +.+|++||-|-..+ |=..||.
T Consensus 50 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~-~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~ 128 (439)
T 2xu9_A 50 RVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPF-LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLL 128 (439)
T ss_dssp EECTTCEEEEEEEECSSSCBCCEEETCCCCTTTSCTT-CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCC
T ss_pred EEeCCCEEEEEEEECCCCCcceEeCCCCCCccccCCc-ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCe
Q ss_pred EEEEecCCCCCCC
Q 031882 121 VTINIGGEHSSAS 133 (151)
Q Consensus 121 l~I~V~~~~s~~~ 133 (151)
-.+.|.+.....|
T Consensus 129 G~liV~~~~~~~~ 141 (439)
T 2xu9_A 129 GALVVESSLDAIP 141 (439)
T ss_dssp EEEEECCGGGGSH
T ss_pred EEEEEcCccccCc
No 99
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=27.60 E-value=78 Score=25.39 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.1
Q ss_pred EEEeccCceEEEEeCCCCCCC------CCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDSHCD------RGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~HC~------~GmKl~I~V~~~~ 129 (151)
.++.+.||.++|-|-...||. .||...|.+...+
T Consensus 240 ~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 466788999999999999963 5788888887654
No 100
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=26.15 E-value=19 Score=25.21 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=10.3
Q ss_pred CeeEeCcEEEEe
Q 031882 51 QKFHFGDTIVFN 62 (151)
Q Consensus 51 ~tf~vGD~L~F~ 62 (151)
+.+++||+|+|+
T Consensus 32 ~~ikvGD~I~f~ 43 (109)
T 2z0t_A 32 RQIKPGDIIIFE 43 (109)
T ss_dssp GGCCTTCEEEEG
T ss_pred hcCCCCCEEEEC
Confidence 478999999993
No 101
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=26.11 E-value=23 Score=23.07 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.1
Q ss_pred cCCeeEeCcEEEEeecCC
Q 031882 49 SKQKFHFGDTIVFNWTGS 66 (151)
Q Consensus 49 ~~~tf~vGD~L~F~~~~~ 66 (151)
..++|.+||.|++--++.
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 467999999999866443
No 102
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=25.78 E-value=19 Score=25.96 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=5.7
Q ss_pred eeEeCcEEEEee
Q 031882 52 KFHFGDTIVFNW 63 (151)
Q Consensus 52 tf~vGD~L~F~~ 63 (151)
++..||++.|+|
T Consensus 101 tl~rG~t~~F~y 112 (126)
T 4dny_A 101 TLSVGNTLLFKY 112 (126)
T ss_dssp EECTTCEEEEEE
T ss_pred EecCCCEEEEEE
Confidence 444444444444
No 103
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=25.66 E-value=28 Score=32.86 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCeeEeCcEEEEee-c-C----CCeeEEEcccccCcCcCCCCC--C-ccccCCC---cEEEeccCceEEEEeCCCCCCCC
Q 031882 50 KQKFHFGDTIVFNW-T-G----SHSVAEVSKADYDKCRTKSPD--G-EIHETSP---ANYTLNSNGTHYFICTVDSHCDR 117 (151)
Q Consensus 50 ~~tf~vGD~L~F~~-~-~----~H~V~~Vs~~~y~~C~~~~~~--~-~~~~~G~---~~v~l~~~G~~YFiC~v~~HC~~ 117 (151)
..+++.|++++|+. + + .|++ .+....+. .+|. . .....|. ..++++++|.|+|.|-...|=..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~-~i~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAA-FFHGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEE-EETTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEE-EEcCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 46899999999999 4 3 2333 23322232 1121 0 1122333 35677889999999999989889
Q ss_pred CCeEEEEecCCCCC
Q 031882 118 GQKVTINIGGEHSS 131 (151)
Q Consensus 118 GmKl~I~V~~~~s~ 131 (151)
||...+.|...+..
T Consensus 347 Gm~~~~~V~~~~~~ 360 (1065)
T 2j5w_A 347 GLQAFFQVQECNKS 360 (1065)
T ss_dssp TCEEEEEEECSCCC
T ss_pred CCEEEEEEecCCCc
Confidence 99999999865543
No 104
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=24.66 E-value=39 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.3
Q ss_pred EEEeccCceEEEEeCCCC-CCCCCCeEEEEecCCC
Q 031882 96 NYTLNSNGTHYFICTVDS-HCDRGQKVTINIGGEH 129 (151)
Q Consensus 96 ~v~l~~~G~~YFiC~v~~-HC~~GmKl~I~V~~~~ 129 (151)
.++++.||.++|.|.... |=..||.-.+.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 467788999999998763 6578999889987644
No 105
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=24.64 E-value=1.6 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=11.3
Q ss_pred CCeeEeCcEEEEee
Q 031882 50 KQKFHFGDTIVFNW 63 (151)
Q Consensus 50 ~~tf~vGD~L~F~~ 63 (151)
+++|.|.|.|.|.|
T Consensus 4 skpfnvddvlkftf 17 (27)
T 2hzs_I 4 SKPFNVDDVLKFTF 17 (27)
T ss_dssp --CCCHHHHHHHHH
T ss_pred CCCcChhheEEEEe
Confidence 47899999999999
No 106
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=24.54 E-value=20 Score=20.81 Aligned_cols=16 Identities=13% Similarity=0.644 Sum_probs=13.3
Q ss_pred ccccCCeeEeCcEEEE
Q 031882 46 TWASKQKFHFGDTIVF 61 (151)
Q Consensus 46 ~Wa~~~tf~vGD~L~F 61 (151)
.|+.+..-++||.+.+
T Consensus 1 ~W~~~~~Y~~Gd~Vty 16 (45)
T 1ed7_A 1 AWQVNTAYTAGQLVTY 16 (45)
T ss_dssp CCCSSEEECTTCCEEE
T ss_pred CccCCceEcCCCEEEE
Confidence 4788888899999876
No 107
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=24.40 E-value=35 Score=23.09 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=24.3
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCeeEeCcEEEEee
Q 031882 25 TYTVGDEMGWTTPPSGAAAYSTWASKQKFHFGDTIVFNW 63 (151)
Q Consensus 25 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~tf~vGD~L~F~~ 63 (151)
+.++||+.| . ...+.|-.. ++.||++.++.
T Consensus 41 ~~~l~DeTG-~------I~~tlW~~~--l~~Gdvv~i~n 70 (106)
T 2k75_A 41 QGYIEDDTA-R------IRISSFGKQ--LQDSDVVRIDN 70 (106)
T ss_dssp EEEEECSSC-E------EEEEEESSC--CCTTEEEEEEE
T ss_pred EEEEEcCCC-e------EEEEEEcCc--cCCCCEEEEEe
Confidence 577888766 2 668999887 99999999984
No 108
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=24.35 E-value=32 Score=31.40 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=24.5
Q ss_pred cCceEEEEeCCCC--CCCCCCeEEEEecCCCCC
Q 031882 101 SNGTHYFICTVDS--HCDRGQKVTINIGGEHSS 131 (151)
Q Consensus 101 ~~G~~YFiC~v~~--HC~~GmKl~I~V~~~~s~ 131 (151)
.+|++||-|.+.. |...||.-.+.|.+..+.
T Consensus 269 ~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~~~ 301 (770)
T 2r7e_B 269 DCKAWAYSSDVDLEKDVHSGLIGPLLVCHTNTL 301 (770)
T ss_dssp SEEEEEECCCSSSSHHHHTSCCEEEEEECSTTS
T ss_pred CCeeEEeeccCCcHHHHhCCceeeEEECCCccc
Confidence 5699999998766 577899988888876543
No 109
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=22.17 E-value=34 Score=27.32 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.2
Q ss_pred ccCceEEEEeCCCCCCCCCCeEEEEecCCC
Q 031882 100 NSNGTHYFICTVDSHCDRGQKVTINIGGEH 129 (151)
Q Consensus 100 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 129 (151)
+.||.+.|-|-+..|=..||.-.++|.+..
T Consensus 244 ~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d 273 (313)
T 3tas_A 244 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 273 (313)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCEeEEEEeCChHHHHCCCeEEEEEECCC
Confidence 358999999999999999999999998655
No 110
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=20.95 E-value=47 Score=22.88 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCCCCCCC---CCCCccccc-cCCeeEeCcEEEEee-cC
Q 031882 32 MGWTTPPS---GAAAYSTWA-SKQKFHFGDTIVFNW-TG 65 (151)
Q Consensus 32 ~GW~~~~~---~~~~Y~~Wa-~~~tf~vGD~L~F~~-~~ 65 (151)
..|+..|. ....|+.|. ...+...|+.|.|+| .+
T Consensus 27 g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g~~~~~~F~dG 65 (104)
T 2laa_A 27 GSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFNDG 65 (104)
T ss_dssp SCCCSSSCEECEEETTTTEEEEEEECTTCSCEEEEEECS
T ss_pred CCCCcCCccccccccCCCeEEEEEECCCCCEEEEEEeCC
Confidence 47998764 345578895 666666679999999 44
Done!