BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031883
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
           In Its Apo And Liganded Form
 pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
           In Its Apo And Liganded Form
 pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
           In Its Apo And Liganded Form
 pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
           In Its Apo And Liganded Form
          Length = 283

 Score = 30.4 bits (67), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 5   NVKVLSMETLVR--YYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQ-HGPLTVSN 61
           N     +ET+V   Y++     AVN  +++P +  Q A     + Y I+ + +GPL V  
Sbjct: 148 NFGAEDLETIVSLTYFTP----AVNQIELHPLL-NQAALREVNAGYNIVTEAYGPLGVGR 202

Query: 62  TWIHAKDAGISGLNGKTHMKIMLKW 86
              H     I+  +G+T  +++L+W
Sbjct: 203 LLDHPAVTAIAEAHGRTAAQVLLRW 227


>pdb|2WAQ|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
          Directed Rna Polymerase
 pdb|2WB1|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
          Directed Rna Polymerase
 pdb|2WB1|Z Chain Z, The Complete Structure Of The Archaeal 13-Subunit Dna-
          Directed Rna Polymerase
 pdb|2Y0S|H Chain H, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
          In P21 Space Group
 pdb|2Y0S|Z Chain Z, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
          In P21 Space Group
 pdb|4AYB|H Chain H, Rnap At 3.2ang
 pdb|4B1O|H Chain H, Archaeal Rnap-Dna Binary Complex At 4.32ang
 pdb|4B1P|Z Chain Z, Archaeal Rnap-Dna Binary Complex At 4.32ang
          Length = 84

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 29 RKINPK----VPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGK 77
          RKI+P+    VP  +  SI ++ Y I+K+ G       WI A D     +N K
Sbjct: 7  RKIDPRIHYLVPKHEVLSIDEA-YKILKELGIRPEQLPWIRASDPVARSINAK 58


>pdb|1QWK|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
           Hypothetical 35.2 Kda Protein (Aldose Reductase Family
           Member)
          Length = 317

 Score = 26.6 bits (57), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 110 TLPEEPQTDQLEIPSEVQLQDEKSLAPKTRKKPKDNKMKF----GC 151
           TLP   + D    PS++Q Q+  +LA KT K P    +++    GC
Sbjct: 213 TLPTGQKLDWAPAPSDLQDQNVLALAEKTHKTPAQVLLRYALDRGC 258


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,419,382
Number of Sequences: 62578
Number of extensions: 163499
Number of successful extensions: 328
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 5
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)