BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031883
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1UEC5|Y1984_MYCSK Uncharacterized oxidoreductase Mkms_1984 OS=Mycobacterium sp.
(strain KMS) GN=Mkms_1984 PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 48 YGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKW 86
YGI+ + +GPL V HA G++ +GKT +++L+W
Sbjct: 188 YGIVTEAYGPLGVGRLLDHAAVTGVAQAHGKTPAQVLLRW 227
>sp|Q1BAN7|Y1938_MYCSS Uncharacterized oxidoreductase Mmcs_1938 OS=Mycobacterium sp.
(strain MCS) GN=Mmcs_1938 PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 48 YGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKW 86
YGI+ + +GPL V HA G++ +GKT +++L+W
Sbjct: 188 YGIVTEAYGPLGVGRLLDHAAVTGVAQAHGKTPAQVLLRW 227
>sp|Q64746|YO13_ADEG1 Uncharacterized protein ORF13 OS=Fowl adenovirus A serotype 1
(strain CELO / Phelps) GN=13 PE=4 SV=1
Length = 339
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 34 KVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKML 93
++P+++ ++ + Y V + W H + G GK +L+W+RG
Sbjct: 129 QLPSEEPDTLKAAFYN---------VCDNWFH-QMMEAEGYEGKVAANAILRWLRGELNT 178
Query: 94 KLFCNGVGSNKKFLHSTL 111
+ C G SN K L + L
Sbjct: 179 LVLCGGRLSNAKSLFNAL 196
>sp|A5I1T6|MURE_CLOBH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A) GN=murE PE=3 SV=1
Length = 483
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 65 HAKDAGISGLNGKTHMKIMLKWMRGRK-----MLKLFCNGVGSNKKFLHSTLPEEPQTDQ 119
H K GI+G NGKT M+K + + +L N +G+ K H T PE + +
Sbjct: 104 HIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQK 163
Query: 120 L 120
L
Sbjct: 164 L 164
>sp|A7FTY1|MURE_CLOB1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium botulinum (strain ATCC 19397 /
Type A) GN=murE PE=3 SV=1
Length = 483
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 65 HAKDAGISGLNGKTHMKIMLKWMRGRK-----MLKLFCNGVGSNKKFLHSTLPEEPQTDQ 119
H K GI+G NGKT M+K + + +L N +G+ K H T PE + +
Sbjct: 104 HIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQK 163
Query: 120 L 120
L
Sbjct: 164 L 164
>sp|A3PXS9|Y1918_MYCSJ Uncharacterized oxidoreductase Mjls_1918 OS=Mycobacterium sp.
(strain JLS) GN=Mjls_1918 PE=3 SV=1
Length = 283
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 48 YGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKW 86
YGI+ + +GPL V HA G++ + KT +++L+W
Sbjct: 188 YGIVTEAYGPLGVGRLLDHAAVTGVAQAHDKTPAQVLLRW 227
>sp|P25055|PGKA_CRIFA Phosphoglycerate kinase, glycosomal OS=Crithidia fasciculata
GN=PGKA PE=3 SV=1
Length = 505
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 52 KQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTL 111
K+ P+ + N+ K A SGL G I L W R+ N GS K + + L
Sbjct: 86 KRQTPVQLPNS--RGKTAFFSGLRGDAKATI-LAWSSQREKAATLSNPYGSGKTAVFARL 142
Query: 112 PEEPQ 116
PEE +
Sbjct: 143 PEEEK 147
>sp|A0QV09|Y2407_MYCS2 Uncharacterized oxidoreductase MSMEG_2407/MSMEI_2346
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=MSMEG_2407 PE=1 SV=1
Length = 283
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 5 NVKVLSMETLVR--YYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQ-HGPLTVSN 61
N +ET+V Y++ AVN +++P + Q A + Y I+ + +GPL V
Sbjct: 148 NFGAEDLETIVSLTYFTP----AVNQIELHPLL-NQAALREVNAGYNIVTEAYGPLGVGR 202
Query: 62 TWIHAKDAGISGLNGKTHMKIMLKW 86
H I+ +G+T +++L+W
Sbjct: 203 LLDHPAVTAIAEAHGRTAAQVLLRW 227
>sp|A7GN42|GPDA_BACCN Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
subsp. cytotoxis (strain NVH 391-98) GN=gpsA PE=3 SV=1
Length = 341
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 9 LSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHA 66
+++ + + YSS +A V+V + VPT+ + Q + +I GP+ TWIHA
Sbjct: 53 ITLPSTIVAYSSLEEALVDVSTVLLVVPTKAYREVLQDMKKVIS--GPM----TWIHA 104
>sp|Q9VK41|TTC30_DROME Tetratricopeptide repeat protein 30 homolog OS=Drosophila
melanogaster GN=CG5142 PE=2 SV=3
Length = 655
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 60 SNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL--FCNGVG----SNKKFLHSTLPE 113
++TW+H K + L G I+L + +++L FC G +N +PE
Sbjct: 571 ADTWLHVKHCILGLLTGMAKQNIILPYATVQEVLNFLRFCESYGLFTPANIFSATEQVPE 630
Query: 114 EPQTDQLE 121
EP T LE
Sbjct: 631 EPLTIGLE 638
>sp|Q62471|VNS1_MOUSE Vomeronasal secretory protein 1 OS=Mus musculus GN=Lcn3 PE=2 SV=2
Length = 182
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 73 GLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQL 128
GKTH+++ L ++G M L+C+G +FL + L + LE E ++
Sbjct: 94 AFEGKTHLQVQLSSVKGHYM--LYCDGEIEGMRFLMTQLIGRDPQENLEALEEFKV 147
>sp|P07589|FINC_BOVIN Fibronectin OS=Bos taurus GN=FN1 PE=1 SV=4
Length = 2478
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 35 VPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLK 94
VP+ A + I++ PLTVS + D NGK H +I +W R
Sbjct: 22 VPSAGASKSRRQAQQIVQPQSPLTVSQSKPGCYD------NGK-HYQINQQWERTYLGSA 74
Query: 95 LFCNGVGSNKKFLHSTLPEEPQT 117
L C G ++ F + PE +T
Sbjct: 75 LVCTCYGGSRGFNCESKPEPEET 97
>sp|Q8BIZ0|PCD20_MOUSE Protocadherin-20 OS=Mus musculus GN=Pcdh20 PE=2 SV=2
Length = 925
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 63 WIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEI 122
W+ A D G L+ T + I+L + L LF S L STLP P T+ +
Sbjct: 685 WVEAVDGGGPALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAV 744
Query: 123 PSEVQLQDEKSLAPKTRKKPKDNKMK 148
+ + + + R+ P+ +
Sbjct: 745 DKDTGMNAVIAYSIIGRRGPRPESFR 770
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,449,554
Number of Sequences: 539616
Number of extensions: 2122532
Number of successful extensions: 5385
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5377
Number of HSP's gapped (non-prelim): 24
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)