Query 031883
Match_columns 151
No_of_seqs 24 out of 26
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 10:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fu4_A Ferric uptake regulatio 81.6 4.5 0.00015 25.5 5.7 50 45-96 20-71 (83)
2 1xmk_A Double-stranded RNA-spe 77.2 2.7 9.4E-05 28.7 3.8 32 38-72 7-38 (79)
3 1p6r_A Penicillinase repressor 75.5 12 0.00042 23.4 7.5 61 46-113 13-73 (82)
4 2pjp_A Selenocysteine-specific 69.3 15 0.0005 25.4 6.1 55 34-95 58-112 (121)
5 2p5k_A Arginine repressor; DNA 68.0 5.4 0.00018 23.7 3.2 25 47-71 10-34 (64)
6 2htj_A P fimbrial regulatory p 64.7 24 0.00081 22.3 7.4 56 45-107 3-58 (81)
7 2cqn_A Formin-binding protein 64.6 4.6 0.00016 27.5 2.6 27 43-69 11-38 (77)
8 1okr_A MECI, methicillin resis 62.6 29 0.00099 22.6 6.3 59 46-111 14-72 (123)
9 1t6s_A Conserved hypothetical 60.4 21 0.00072 27.2 6.0 59 42-110 91-152 (162)
10 2k4b_A Transcriptional regulat 60.2 13 0.00045 25.6 4.4 59 46-111 39-97 (99)
11 1sfx_A Conserved hypothetical 59.4 29 0.00098 21.5 6.6 57 46-110 24-80 (109)
12 3b73_A PHIH1 repressor-like pr 53.9 8 0.00027 27.5 2.5 47 44-95 15-61 (111)
13 3eyy_A Putative iron uptake re 53.4 11 0.00036 27.0 3.1 52 45-98 22-73 (145)
14 2irp_A Putative aldolase class 53.3 3.9 0.00013 30.6 0.8 31 38-68 151-188 (208)
15 2fk5_A Fuculose-1-phosphate al 51.9 6.7 0.00023 29.6 1.9 40 30-69 123-172 (200)
16 3cjn_A Transcriptional regulat 51.0 53 0.0018 22.0 6.5 56 46-108 56-111 (162)
17 4f3n_A Uncharacterized ACR, CO 50.1 17 0.00059 31.6 4.4 37 31-67 45-86 (432)
18 2xki_A Neural hemoglobin; oxyg 48.2 21 0.00071 24.4 3.8 37 30-66 70-106 (110)
19 3bja_A Transcriptional regulat 47.0 55 0.0019 21.0 5.9 46 46-98 37-82 (139)
20 2fbi_A Probable transcriptiona 46.2 53 0.0018 21.2 5.4 46 46-98 40-85 (142)
21 2okq_A Hypothetical protein YB 45.7 6.9 0.00024 30.3 1.1 37 38-76 41-77 (141)
22 1am7_A Lysozyme; glycosidase, 45.7 8.4 0.00029 29.7 1.6 55 60-116 71-129 (158)
23 3f1b_A TETR-like transcription 45.6 35 0.0012 22.5 4.5 35 35-72 10-47 (203)
24 2oxl_A Hypothetical protein YM 44.9 18 0.00061 24.2 2.9 26 35-60 2-27 (64)
25 1wlx_A Alpha-actinin 4; three- 44.6 27 0.00091 26.2 4.2 32 38-69 69-113 (129)
26 3r0a_A Putative transcriptiona 44.4 73 0.0025 21.7 6.4 59 45-110 29-90 (123)
27 1xn7_A Hypothetical protein YH 43.7 12 0.00042 25.0 2.0 46 44-96 4-49 (78)
28 2opi_A L-fuculose-1-phosphate 43.5 4.5 0.00015 30.6 -0.2 34 36-69 136-173 (212)
29 3mwm_A ZUR, putative metal upt 43.5 60 0.0021 22.8 5.7 61 45-108 17-78 (139)
30 3bpv_A Transcriptional regulat 42.8 65 0.0022 20.7 5.6 45 47-98 34-78 (138)
31 1mzb_A Ferric uptake regulatio 42.3 68 0.0023 22.2 5.8 51 46-98 22-74 (136)
32 2bv6_A MGRA, HTH-type transcri 41.7 71 0.0024 20.8 5.8 56 46-108 41-96 (142)
33 2gmg_A Hypothetical protein PF 41.4 34 0.0012 25.1 4.2 59 41-103 10-76 (105)
34 2w57_A Ferric uptake regulatio 41.3 70 0.0024 22.7 5.9 51 46-98 21-73 (150)
35 2qww_A Transcriptional regulat 40.4 78 0.0027 20.9 6.2 43 46-95 45-87 (154)
36 2z7b_A MLR6791 protein; class 40.2 5.4 0.00019 31.7 -0.2 32 37-68 178-213 (270)
37 2fe3_A Peroxide operon regulat 40.0 23 0.00078 25.1 3.0 51 46-98 26-77 (145)
38 1tu9_A Hypothetical protein PA 39.7 39 0.0013 23.0 4.1 42 29-70 78-124 (134)
39 4a6d_A Hydroxyindole O-methylt 39.5 47 0.0016 26.2 5.1 45 46-97 32-77 (353)
40 2bk9_A CG9734-PA; oxygen trans 38.7 33 0.0011 23.9 3.7 39 30-68 96-136 (153)
41 2pex_A Transcriptional regulat 38.5 85 0.0029 20.8 5.7 45 47-98 52-96 (153)
42 2eth_A Transcriptional regulat 38.4 87 0.003 20.9 6.8 45 46-97 48-92 (154)
43 1oyi_A Double-stranded RNA-bin 37.8 12 0.00042 26.0 1.3 47 39-93 14-60 (82)
44 2z99_A Putative uncharacterize 37.8 46 0.0016 26.7 4.8 52 47-109 105-156 (219)
45 2k02_A Ferrous iron transport 37.5 16 0.00056 25.3 1.9 45 45-96 5-49 (87)
46 2xig_A Ferric uptake regulatio 36.9 1.1E+02 0.0038 21.7 6.6 51 46-98 31-82 (150)
47 2doe_A Transcription elongatio 36.0 35 0.0012 23.1 3.3 27 42-69 18-44 (83)
48 2v9l_A Rhamnulose-1-phosphate 35.5 8.3 0.00028 30.5 0.1 33 36-68 190-226 (274)
49 4ets_A Ferric uptake regulatio 34.5 29 0.001 25.3 3.0 51 46-98 37-90 (162)
50 3zzp_A TS9, ribosomal protein 34.3 40 0.0014 22.7 3.4 25 31-55 52-76 (77)
51 3o63_A Probable thiamine-phosp 34.0 29 0.00099 27.2 3.0 63 36-98 77-143 (243)
52 2o03_A Probable zinc uptake re 33.5 1.2E+02 0.004 20.9 6.6 51 46-98 15-66 (131)
53 2pij_A Prophage PFL 6 CRO; tra 33.3 75 0.0026 18.6 4.7 39 46-96 5-43 (67)
54 3cdh_A Transcriptional regulat 33.1 81 0.0028 20.9 4.8 44 46-96 47-90 (155)
55 1fp2_A Isoflavone O-methyltran 32.7 51 0.0018 25.5 4.2 46 46-95 40-86 (352)
56 3r3t_A 30S ribosomal protein S 32.5 43 0.0015 23.0 3.4 35 31-65 13-48 (99)
57 1lva_A Selenocysteine-specific 31.8 33 0.0011 26.6 3.0 55 33-96 194-249 (258)
58 2c0k_A Hemoglobin; oxygen tran 31.7 64 0.0022 22.5 4.3 40 29-68 96-137 (151)
59 3pt8_B Hemoglobin III; oxygen 31.3 57 0.002 22.6 3.9 40 30-69 98-139 (152)
60 1s3j_A YUSO protein; structura 31.2 1.1E+02 0.0039 20.0 6.5 46 46-98 41-86 (155)
61 1cqm_A Ribosomal protein S6; a 31.0 48 0.0016 22.7 3.4 35 31-65 10-45 (101)
62 2jt1_A PEFI protein; solution 30.8 1.2E+02 0.004 20.1 6.4 55 44-105 6-66 (77)
63 1k0w_A L-ribulose 5 phosphate 30.8 6.1 0.00021 30.1 -1.3 20 50-69 167-186 (231)
64 3dp7_A SAM-dependent methyltra 30.6 47 0.0016 26.1 3.8 42 47-95 40-82 (363)
65 2jr2_A UPF0352 protein CPS_261 30.3 40 0.0014 23.9 2.9 23 31-54 45-71 (76)
66 1sd4_A Penicillinase repressor 30.1 1.1E+02 0.0039 19.7 6.9 59 46-111 14-72 (126)
67 3k2z_A LEXA repressor; winged 29.9 44 0.0015 24.3 3.3 47 41-94 8-55 (196)
68 3pqk_A Biofilm growth-associat 29.7 65 0.0022 20.6 3.8 42 46-95 27-68 (102)
69 1qgp_A Protein (double strande 29.7 68 0.0023 20.8 3.9 46 43-95 15-63 (77)
70 4b4y_A Neuroglobin; transport 29.7 88 0.003 21.9 4.7 40 28-67 101-145 (154)
71 2x4k_A 4-oxalocrotonate tautom 29.2 51 0.0018 18.9 2.9 31 34-64 13-43 (63)
72 1b0b_A Hemoglobin; hemoprotein 28.8 46 0.0016 22.8 3.1 38 30-69 96-133 (142)
73 1qbj_A Protein (double-strande 28.5 56 0.0019 21.8 3.4 46 43-95 11-59 (81)
74 3lb2_A Dehaloperoxidase A; glo 28.3 77 0.0026 22.5 4.2 39 30-68 87-125 (137)
75 2g9w_A Conserved hypothetical 28.2 1.4E+02 0.0049 20.3 5.7 59 46-111 13-72 (138)
76 2rdp_A Putative transcriptiona 28.0 1.3E+02 0.0044 19.7 6.3 45 46-97 46-90 (150)
77 1e4c_P L-fuculose 1-phosphate 28.0 7.3 0.00025 29.4 -1.3 31 38-68 135-169 (215)
78 3vp5_A Transcriptional regulat 27.9 90 0.0031 21.2 4.4 34 36-72 10-45 (189)
79 3o1f_A ATP-dependent CLP prote 27.9 52 0.0018 22.6 3.2 49 11-59 19-76 (81)
80 3ocr_A Class II aldolase/adduc 27.8 9.9 0.00034 30.4 -0.6 32 36-67 168-203 (273)
81 1gyx_A YDCE, B1461, hypothetic 27.6 64 0.0022 20.3 3.4 37 32-68 9-45 (76)
82 3knw_A Putative transcriptiona 27.4 91 0.0031 20.7 4.3 34 36-72 12-47 (212)
83 2nyx_A Probable transcriptiona 27.3 1.5E+02 0.0052 20.2 6.8 55 32-98 40-94 (168)
84 1otf_A 4-oxalocrotonate tautom 27.1 52 0.0018 19.1 2.7 34 35-68 11-44 (62)
85 1pvt_A Sugar-phosphate aldolas 27.0 11 0.00037 28.9 -0.5 35 35-69 171-209 (238)
86 2qtq_A Transcriptional regulat 26.6 1.1E+02 0.0038 20.2 4.6 35 35-72 13-49 (213)
87 3dew_A Transcriptional regulat 26.5 66 0.0022 21.1 3.4 31 39-72 9-41 (206)
88 2r3s_A Uncharacterized protein 26.2 70 0.0024 24.0 3.9 41 46-94 30-70 (335)
89 3bdd_A Regulatory protein MARR 26.2 1.3E+02 0.0045 19.2 6.7 44 46-96 35-78 (142)
90 1yzv_A Hypothetical protein; s 26.1 24 0.00082 26.6 1.3 15 45-59 190-204 (204)
91 1x46_A Globin chain, hemoglobi 26.0 80 0.0027 21.8 3.9 40 30-69 99-141 (150)
92 2a61_A Transcriptional regulat 26.0 1.4E+02 0.0047 19.3 5.4 46 46-98 37-82 (145)
93 1guu_A C-MYB, MYB proto-oncoge 25.6 1.1E+02 0.0036 18.0 3.9 34 46-87 13-46 (52)
94 1u9d_A Hypothetical protein VC 25.5 46 0.0016 24.5 2.7 33 17-53 10-42 (122)
95 3bro_A Transcriptional regulat 25.3 1.4E+02 0.0048 19.2 6.8 46 46-98 38-85 (141)
96 2d9a_A B-MYB, MYB-related prot 25.3 1.1E+02 0.0038 18.5 4.1 35 45-87 17-51 (60)
97 3s2w_A Transcriptional regulat 25.3 1.6E+02 0.0053 19.7 6.3 46 46-98 54-99 (159)
98 2kjw_A TS9, 30S ribosomal prot 25.3 72 0.0025 22.4 3.6 35 30-64 51-86 (96)
99 3lwj_A Putative TETR-family tr 25.2 81 0.0028 20.9 3.7 33 37-72 11-45 (202)
100 2opa_A Probable tautomerase YW 25.1 70 0.0024 18.5 3.0 33 36-68 12-44 (61)
101 3i4p_A Transcriptional regulat 25.1 47 0.0016 23.5 2.6 45 43-94 4-48 (162)
102 3jth_A Transcription activator 24.6 37 0.0013 21.6 1.8 42 46-95 27-68 (98)
103 3m4r_A Uncharacterized protein 24.5 8 0.00027 29.8 -1.7 31 38-68 167-202 (222)
104 3mvp_A TETR/ACRR transcription 24.4 81 0.0028 21.0 3.6 31 39-72 27-59 (217)
105 3hta_A EBRA repressor; TETR fa 24.3 91 0.0031 21.7 4.0 45 25-72 14-61 (217)
106 1sgm_A Putative HTH-type trans 24.3 81 0.0028 20.5 3.5 40 38-80 6-54 (191)
107 3col_A Putative transcription 24.2 77 0.0026 20.6 3.4 33 37-72 9-43 (196)
108 1x19_A CRTF-related protein; m 24.0 94 0.0032 24.0 4.3 42 46-95 55-96 (359)
109 2z15_A Protein TOB1; human TOB 23.9 1.2E+02 0.0042 22.4 4.8 22 33-54 25-46 (130)
110 3hsr_A HTH-type transcriptiona 23.9 1.2E+02 0.004 20.0 4.3 46 46-98 40-85 (140)
111 2j5a_A 30S ribosomal protein S 23.9 73 0.0025 22.2 3.4 35 31-65 16-51 (110)
112 4fye_A SIDF, inhibitor of grow 23.8 16 0.00054 33.6 -0.2 50 38-87 333-384 (761)
113 2nnn_A Probable transcriptiona 23.7 1.5E+02 0.0051 18.9 5.2 45 46-97 42-86 (140)
114 3cwr_A Transcriptional regulat 23.3 1.4E+02 0.0047 19.6 4.5 33 37-72 16-50 (208)
115 1eca_A Erythrocruorin (AQUO Me 23.0 1.1E+02 0.0036 21.3 4.1 36 31-66 88-124 (136)
116 2krc_A DNA-directed RNA polyme 22.8 67 0.0023 22.8 3.0 28 42-69 14-42 (99)
117 3dcf_A Transcriptional regulat 22.8 1.1E+02 0.0036 20.4 3.9 33 37-72 30-64 (218)
118 3kkc_A TETR family transcripti 22.6 65 0.0022 21.0 2.7 31 39-72 13-45 (177)
119 1u2w_A CADC repressor, cadmium 22.6 53 0.0018 22.2 2.4 43 46-95 46-88 (122)
120 3k1r_B Usher syndrome type-1G 22.3 55 0.0019 21.4 2.4 39 48-91 18-60 (74)
121 1zg3_A Isoflavanone 4'-O-methy 22.2 93 0.0032 24.1 4.0 46 46-95 34-80 (358)
122 1lj9_A Transcriptional regulat 22.0 1.7E+02 0.0057 18.9 6.5 45 47-98 34-78 (144)
123 2fa5_A Transcriptional regulat 21.7 1.6E+02 0.0056 19.5 4.7 44 46-96 53-96 (162)
124 1y0u_A Arsenical resistance op 21.6 59 0.002 20.8 2.3 41 46-95 35-75 (96)
125 1z91_A Organic hydroperoxide r 21.6 1.7E+02 0.0059 18.9 4.7 44 46-96 44-87 (147)
126 2f07_A YVDT; helix-turn-helix, 21.3 1.2E+02 0.0039 20.6 3.9 32 38-72 10-43 (197)
127 1bin_A Leghemoglobin A; heme, 21.3 97 0.0033 20.7 3.5 39 29-67 91-133 (143)
128 2ip2_A Probable phenazine-spec 21.2 1.2E+02 0.0042 22.9 4.4 42 46-95 32-73 (334)
129 2d4g_A Hypothetical protein BS 21.2 84 0.0029 21.6 3.2 31 30-60 34-68 (171)
130 1ith_A Hemoglobin (cyano Met); 21.0 1.2E+02 0.004 20.8 3.9 40 29-68 93-134 (141)
131 2rae_A Transcriptional regulat 20.7 1.3E+02 0.0045 20.0 4.1 33 37-72 16-50 (207)
132 3f0c_A TETR-molecule A, transc 20.7 1E+02 0.0035 20.6 3.5 32 38-72 11-44 (216)
133 2dim_A Cell division cycle 5-l 20.4 1.5E+02 0.005 18.6 4.0 36 45-88 18-53 (70)
134 1yhu_A Hemoglobin A1 chain; gl 20.3 80 0.0028 22.0 3.0 38 30-68 94-133 (145)
135 1jf3_A Monomer hemoglobin comp 20.2 1.3E+02 0.0045 20.4 4.0 36 33-68 96-135 (147)
136 1gvd_A MYB proto-oncogene prot 20.1 1.4E+02 0.0048 17.5 3.7 35 45-87 12-46 (52)
No 1
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.65 E-value=4.5 Score=25.48 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=40.6
Q ss_pred HHHHHHHHHh--CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 45 QSLYGIIKQH--GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 45 r~l~dIlkeH--GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
..|+++|.++ +|+|+.+.++.+++.+. ++ |+.=.-..|+.|.+...|..+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~-~i-s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE-EI-GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CC-CHhhHHHHHHHHHHCCCeEEE
Confidence 4578888877 79999999999988753 33 677788889999999998755
No 2
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=77.15 E-value=2.7 Score=28.72 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhhhHHHHHhccC
Q 031883 38 QQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGIS 72 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHGPLTVsntW~hake~gi~ 72 (151)
.+-.++.+.|++.|+.|||+|+.+. +++.||+
T Consensus 7 ~~~~~~~~~IL~~Lk~~g~~ta~ei---A~~Lgit 38 (79)
T 1xmk_A 7 LDMAEIKEKICDYLFNVSDSSALNL---AKNIGLT 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEHHHH---HHHHCGG
T ss_pred ccchhHHHHHHHHHHHcCCcCHHHH---HHHcCCC
Confidence 4446778999999999999998764 6666776
No 3
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.53 E-value=12 Score=23.41 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecCCC
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPE 113 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~~~ 113 (151)
.++++|-++||+|+++.-+++... .++ |+.-+..+|+=|.++..|...-. | +.|.|.+-.+
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~--~~~-s~~Tv~~~l~rL~~kGlv~r~~~--g--r~~~y~~~~~ 73 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKT--STW-SPKTIQTMLLRLIKKGALNHHKE--G--RVFVYTPNID 73 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHH--SCC-CHHHHHHHHHHHHHTTSEEEEEE--T--TEEEEEESCS
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhc--CCc-cHHHHHHHHHHHHHCCCeEEEec--C--CEEEEEeecC
Confidence 467788889999999999998753 233 67888889999999999987632 3 4788875444
No 4
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=69.27 E-value=15 Score=25.40 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 34 KVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 34 kvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
-..++.-..+.+.|.+++++||++|+++-=+.. | .|..-.--+|.+|-...+-+.
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l---g----~sRK~ai~lLE~~Dr~g~TrR 112 (121)
T 2pjp_A 58 YYRNDRIVEFANMIRDLDQECGSTCAADFRDRL---G----VGRKLAIQILEYFDRIGFTRR 112 (121)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH---T----SCHHHHHHHHHHHHHHTSEEE
T ss_pred eECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH---C----CcHHHHHHHHHHHhhcCCeEe
Confidence 467788888899999999999999999865555 4 455556688888866555543
No 5
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=67.99 E-value=5.4 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.6
Q ss_pred HHHHHHHhCCcchhhhhHHHHHhcc
Q 031883 47 LYGIIKQHGPLTVSNTWIHAKDAGI 71 (151)
Q Consensus 47 l~dIlkeHGPLTVsntW~hake~gi 71 (151)
|..++.+++++|+.+--+.+++.|.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~ 34 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGY 34 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 5567889999999999999988854
No 6
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=64.74 E-value=24 Score=22.27 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCccee
Q 031883 45 QSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFL 107 (151)
Q Consensus 45 r~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFL 107 (151)
+.|++.|.++||+|+++. ++..|+ |+.-....|+-|.+...|...-...|....|.
T Consensus 3 ~~Il~~L~~~~~~s~~eL---a~~lgv----s~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~ 58 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEI---AEALAV----TDYQARYYLLLLEKAGMVQRSPLRRGMATYWF 58 (81)
T ss_dssp HHHHHHHHHSCCCCHHHH---HHHHTS----CHHHHHHHHHHHHHHTSEEEECCSSSSSCEEE
T ss_pred HHHHHHHHHcCCCCHHHH---HHHHCc----CHHHHHHHHHHHHHCCCEEEeccCCCCcEEEE
Confidence 468889999999999875 344466 46667778888888888876655444443333
No 7
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=64.56 E-value=4.6 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.477 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhC-CcchhhhhHHHHHh
Q 031883 43 IAQSLYGIIKQHG-PLTVSNTWIHAKDA 69 (151)
Q Consensus 43 Itr~l~dIlkeHG-PLTVsntW~hake~ 69 (151)
+-..+.++|+++. ||+...+|+.|+..
T Consensus 11 l~~~F~~mLk~~~p~I~~~s~We~vr~~ 38 (77)
T 2cqn_A 11 KESAFKSMLKQAAPPIELDAVWEDIRER 38 (77)
T ss_dssp HHHHHHHHHHTCSSCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 3446889999995 79999999999976
No 8
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.64 E-value=29 Score=22.61 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecC
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTL 111 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~ 111 (151)
.++.+|.++||+|+++.-+.+..- .++ |+.-+-.+|+=|-++..|...-+ | +.+.|...
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~~~-s~~tv~~~l~~L~~~Glv~r~~~--~--rr~~~~~l 72 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--KDW-SPKTIRTLITRLYKKGFIDRKKD--N--KIFQYYSL 72 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--CCC-CHHHHHHHHHHHHHHTSEEEEEE--T--TEEEEEES
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--CCC-cHhhHHHHHHHHHHCCCeEEEec--C--CeEEEEEe
Confidence 366778889999999998887542 222 67889999999999999987754 3 55665443
No 9
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=60.43 E-value=21 Score=27.16 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=38.8
Q ss_pred HHHHH---HHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeec
Q 031883 42 SIAQS---LYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHST 110 (151)
Q Consensus 42 tItr~---l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt 110 (151)
.+|++ ++.||.-|+|+|-++. ..++|++|-.+++-++ +|..++-.-....+-+-.+|.|
T Consensus 91 ~LS~aaLEtLaiIay~qPiTR~eI------~~irGv~~~~~v~~L~----e~glI~e~g~~~~~GRp~ly~t 152 (162)
T 1t6s_A 91 RLSRSMLEVLAVVAWHQPVTKGEI------QQIRGASPDYSIDRLL----ARGLIEVRGRADSPGRPLQYGT 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHCSEEHHHH------HHHHTCCCCSHHHHHH----HTTSEEEEEECSSTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHcCCcCHHHH------HHHHCCCHHHHHHHHH----HCCCEEEccccCCCCCCeEEEE
Confidence 44544 5789999999997754 4577777888777665 6676765543333334677754
No 10
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=60.18 E-value=13 Score=25.59 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecC
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTL 111 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~ 111 (151)
.|.++|-++||+|+.+.-+.+.+. .++ |+.-+..+|.=|-++..|+..-. .+.|+|++.
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~l~~~--~~~-s~sTVt~~L~rLe~KGlV~R~~~----gR~~~Y~p~ 97 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQE--LEW-SLATVKTLLGRLVKKEMLSTEKE----GRKFVYRPL 97 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGG--GCC-CHHHHHHHHHHHHHTTSCEEEEE----TTEEEEECC
T ss_pred HHHHHHHhCCCCCHHHHHHHHhcc--cCC-CHhhHHHHHHHHHHCCCEEEEeC----CCEEEEEEe
Confidence 467788889999999988877542 222 56778889999999999987643 468888753
No 11
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=59.38 E-value=29 Score=21.46 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeec
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHST 110 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt 110 (151)
.|+.+|.++||+|+++.=+ ..|+ |+.-.-..|+=|.++..|....+. +....+++.|
T Consensus 24 ~il~~l~~~~~~s~~ela~---~l~i----s~~tv~~~l~~L~~~glv~~~~~~-~~r~~~~~~t 80 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIAR---ELDL----SARFVRDRLKVLLKRGFVRREIVE-KGWVGYIYSA 80 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEEEEE-SSSEEEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHH---HHCC----CHHHHHHHHHHHHHCCCEEEEeec-CCceEEEEec
Confidence 4677788899999988644 3455 477788888889999999877554 4445565543
No 12
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.94 E-value=8 Score=27.50 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 44 AQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 44 tr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
-+.|+.+|+++||+|+++--..+ +.|+ |.....--|+-+.+.-.|..
T Consensus 15 d~~IL~~L~~~g~~s~~eLA~~l-~~gi----S~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELEDRD-EIRI----SKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHHTST-TCCS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-hcCC----CHHHHHHHHHHHHHCCCEEe
Confidence 48899999999999999875432 0133 46677777888888888875
No 13
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=53.41 E-value=11 Score=26.98 Aligned_cols=52 Identities=6% Similarity=-0.040 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 45 QSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 45 r~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
+.|+++|.+++|+|+.+.++.+++.+-+ -|..=--.-|..+.+.-+|+-+-.
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~~~--is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTASG--INISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhCCC--CCHhHHHHHHHHHHHCCcEEEEEe
Confidence 3567778888899999999999887532 255666778899999988866543
No 14
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=53.34 E-value=3.9 Score=30.61 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHH-------HHHHhCCcchhhhhHHHHH
Q 031883 38 QQAYSIAQSLYG-------IIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 38 Eqa~tItr~l~d-------IlkeHGPLTVsntW~hake 68 (151)
+-|..|++.|-+ ||+.||+++++.+++.|-.
T Consensus 151 ~La~~i~~~l~~~~~~~avll~nHG~~~~G~~~~eA~~ 188 (208)
T 2irp_A 151 LLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSMEEALI 188 (208)
T ss_dssp HHHHHHHHHHHHCSCCSCEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEcCCCCeEecCCHHHHHH
Confidence 446677777754 4789999999999888764
No 15
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=51.93 E-value=6.7 Score=29.64 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHH----HHHHhCCcchh------hhhHHHHHh
Q 031883 30 KINPKVPTQQAYSIAQSLYG----IIKQHGPLTVS------NTWIHAKDA 69 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~d----IlkeHGPLTVs------ntW~hake~ 69 (151)
|.++..-.|.++.|++.|-+ ||+.||+++++ .+++.|-..
T Consensus 123 ~y~~~g~~ela~~i~~~l~~~~avll~nHG~~~~G~~~~~~~~~~eA~~~ 172 (200)
T 2fk5_A 123 PKTVSATEEAALSVAEALREHRACLLRGHGAFAVGLKEAPEEALLEAYGL 172 (200)
T ss_dssp CSCCSSSHHHHHHHHHHHHHCSEEEETTTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhCcCCEEEECCCCcEEEeCCCCCcCcHHHHHHH
Confidence 54544556788888888865 57899999999 888877543
No 16
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=50.95 E-value=53 Score=22.03 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLH 108 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLy 108 (151)
.|+.+|.++||+|+++.=+ ..|+ |+.-+-.+|+-|.++..|...-+..+....+++
T Consensus 56 ~iL~~l~~~~~~t~~ela~---~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~ 111 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGI---FAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVY 111 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEE
T ss_pred HHHHHHHHCCCCCHHHHHH---HHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEE
Confidence 3566778899999998744 3454 478889999999999999876443333333333
No 17
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=50.07 E-value=17 Score=31.58 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHH-----HhCCcchhhhhHHHH
Q 031883 31 INPKVPTQQAYSIAQSLYGIIK-----QHGPLTVSNTWIHAK 67 (151)
Q Consensus 31 I~pkvP~Eqa~tItr~l~dIlk-----eHGPLTVsntW~hak 67 (151)
..+.+|-.+|+..|..|.++|+ ..||||+++-.+.+=
T Consensus 45 ~~lp~p~~~~~~~s~~L~~~i~~~I~~~~GpI~fa~yM~~aL 86 (432)
T 4f3n_A 45 ASLPVPGPDALAQSEALAASLRAEIASAGGWIPFSRYMERVL 86 (432)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHhCCCeeHHHHHHHHh
Confidence 4567777788888777766544 379999999988773
No 18
>2xki_A Neural hemoglobin; oxygen storage, metal-binding; HET: HEM SO4; 1.30A {Cerebratulus lacteus} PDB: 1kr7_A* 1v07_A* 2xkg_A* 2xkh_A* 2vyz_A* 2vyy_A*
Probab=48.20 E-value=21 Score=24.37 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=31.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHH
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHA 66 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~ha 66 (151)
+....|.|++=..+...|...|++|++=.+...|+..
T Consensus 70 H~~~gV~~~~F~~~~~~Ll~~L~~~~~~~~~~a~~k~ 106 (110)
T 2xki_A 70 HKGRNVGSAEFHNAKACLAKACSAHGAPDLGHAIDDI 106 (110)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4456899999999999999999999987777778754
No 19
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.99 E-value=55 Score=21.04 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.++.+|.++||+|+++.= +..|+ |+.-+-.+++-|.++..|...-+
T Consensus 37 ~iL~~l~~~~~~~~~ela---~~l~~----~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLI---ENMGC----VPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp HHHHHHHHSCSEEHHHHH---HHCSS----CCTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHcCCcCHHHHH---HHHCC----ChhHHHHHHHHHHHCCCeeeccC
Confidence 366777889999999863 34455 46777888899999998877643
No 20
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.21 E-value=53 Score=21.20 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.++..|.++||+|+++. ++..|+ |+.-+-.+++-|.++..|...-+
T Consensus 40 ~iL~~l~~~~~~t~~el---a~~l~~----s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQL---ANQACI----LRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHCSEEHHHH---HHHTTC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCCCCHHHH---HHHHCC----CHhHHHHHHHHHHHCCCEEeecC
Confidence 36677788999999986 333454 57888999999999999977643
No 21
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=45.74 E-value=6.9 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCc
Q 031883 38 QQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNG 76 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHGPLTVsntW~hake~gi~gL~S 76 (151)
|.=...++.--.|.+|||.|.|-+||.- |+-...++|
T Consensus 41 eaY~~~A~~a~~vfke~GAl~~vEcWgd--DVp~Gk~Ts 77 (141)
T 2okq_A 41 DAYREMAAKAAPLFKEFGALRIVECWAS--DVPDGKVTD 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEE--ECCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhCCeeeeeeecc--cCCCCcccC
Confidence 3334577888899999999999999952 333334444
No 22
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=45.74 E-value=8.4 Score=29.66 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=41.4
Q ss_pred hhhhHHHHHh-ccCCCCchhHHHHHHHHhhccceeeEEeeccCCCccee---eecCCCCCC
Q 031883 60 SNTWIHAKDA-GISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFL---HSTLPEEPQ 116 (151)
Q Consensus 60 sntW~hake~-gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFL---ytt~~~~P~ 116 (151)
..||.+++.. |+.+..-..+=++-+.|+++|..|..+=. |.-..|+ -..|..=|.
T Consensus 71 ~~Tw~~~~~~lgl~~F~P~~QD~~A~~Li~~rgal~~i~~--G~i~~a~~~la~~WASLP~ 129 (158)
T 1am7_A 71 SRXXDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDR--GDIRQAIDRCSNIXASLPG 129 (158)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTTCHHHHHH--TCHHHHHHHHTTTCTTSCC
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCcHHHHHc--CCHHHHHHHhccccccCCC
Confidence 4699987755 99999999999999999999987654433 4333333 258888887
No 23
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=45.55 E-value=35 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=26.9
Q ss_pred CChHHH-HHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 35 VPTQQA-YSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 35 vP~Eqa-~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
.+.+++ +.|-.+..+++.++|. +||.+. ++++|++
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 47 (203)
T 3f1b_A 10 LPRAVREQQMLDAAVDVFSDRGFHETSMDAI---AAKAEIS 47 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHTTSC
T ss_pred CChHHHHHHHHHHHHHHHHHcCcccccHHHH---HHHhCCc
Confidence 445555 6799999999999995 888864 6777776
No 24
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=44.88 E-value=18 Score=24.22 Aligned_cols=26 Identities=4% Similarity=0.124 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcchh
Q 031883 35 VPTQQAYSIAQSLYGIIKQHGPLTVS 60 (151)
Q Consensus 35 vP~Eqa~tItr~l~dIlkeHGPLTVs 60 (151)
.+|.|.+.+.+.+.+|+...+|+|=-
T Consensus 2 ~~~~E~e~Lg~iv~eil~~g~~vsnK 27 (64)
T 2oxl_A 2 LLEEESAVLGQAVTNLMLSGDNVNNK 27 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCCcHH
Confidence 36889999999999999999999843
No 25
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=44.60 E-value=27 Score=26.16 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhC-------Ccc------hhhhhHHHHHh
Q 031883 38 QQAYSIAQSLYGIIKQHG-------PLT------VSNTWIHAKDA 69 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHG-------PLT------VsntW~hake~ 69 (151)
++-..|++.|-++++.++ |.| +.+.|+++++.
T Consensus 69 ~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 69 EAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 455678899999999999 777 58999999864
No 26
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=44.42 E-value=73 Score=21.71 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=43.6
Q ss_pred HHHHHHHHHhC-C-cchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE-eeccCCCcceeeec
Q 031883 45 QSLYGIIKQHG-P-LTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF-CNGVGSNKKFLHST 110 (151)
Q Consensus 45 r~l~dIlkeHG-P-LTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~-CnhvG~~KqFLytt 110 (151)
..|+.+|.+++ | +|+++.-+.+ |+ |+.-.-..|+-|.++-.|... +...+....|.|.+
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l---~~----s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~ 90 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSL---KL----DVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKI 90 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHH---TS----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHH---Cc----CHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEec
Confidence 35777787776 4 9999986655 44 788888899999999999776 44444456778864
No 27
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=43.72 E-value=12 Score=25.05 Aligned_cols=46 Identities=7% Similarity=0.132 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 44 AQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 44 tr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
-+.|.+.|++||.+||++- +++.+++ .-=.+.+|.-+-++..|+.+
T Consensus 4 L~~Il~~L~~~g~vsv~eL---a~~l~VS----~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQI---SQTLNTP----QPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHH---HHHTTCC----HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEEe
Confidence 3678999999999999975 4444655 34566667666666666555
No 28
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=43.51 E-value=4.5 Score=30.56 Aligned_cols=34 Identities=9% Similarity=0.321 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHH----HHHHhCCcchhhhhHHHHHh
Q 031883 36 PTQQAYSIAQSLYG----IIKQHGPLTVSNTWIHAKDA 69 (151)
Q Consensus 36 P~Eqa~tItr~l~d----IlkeHGPLTVsntW~hake~ 69 (151)
-.|.++.|++.|-+ ||+.||+++++.+++.|-..
T Consensus 136 ~~~la~~i~~~l~~~~avll~nHG~~~~G~t~~eA~~~ 173 (212)
T 2opi_A 136 SPELAKAVVEAMLKHNSVLLTNHGQVVCGKDFDQVYER 173 (212)
T ss_dssp CHHHHHHHHHHTSSCSEEEETTTEEEEEESSHHHHHHH
T ss_pred cHHHHHHHHHHhccCCEEEEcCCCcEEEcCCHHHHHHH
Confidence 34667777776633 57789999999999887643
No 29
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.50 E-value=60 Score=22.81 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHHH-hCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceee
Q 031883 45 QSLYGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLH 108 (151)
Q Consensus 45 r~l~dIlke-HGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLy 108 (151)
++|+++|.+ ++|+|+.+.++.+++.+-+ -|..=.-..|..|-+.-+|+-+-.. ++...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~~~-~g~~~Y~~ 78 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDA--VGLTTVYRTLQSLADAGEVDVLRTA-EGESVYRR 78 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTSSEEEECT-TSCEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHCCCEEEEEcC-CCceEEEE
Confidence 357788876 5899999999999987532 2556677788999999998766442 23344443
No 30
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=42.84 E-value=65 Score=20.72 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=35.4
Q ss_pred HHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 47 LYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 47 l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
++.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...-+
T Consensus 34 iL~~l~~~~~~~~~ela~~---l~~----s~~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 34 CLLRIHREPGIKQDELATF---FHV----DKGTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp HHHHHHHSTTCBHHHHHHH---HTC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEEeecC
Confidence 5667788999999987444 354 58889999999999999977644
No 31
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.35 E-value=68 Score=22.24 Aligned_cols=51 Identities=8% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHh--CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQH--GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeH--GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+++|.++ +|+|+.+.++.+++.+-+ -|..=.-.-|+.|.+.-+|+-+-.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGED--VGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHCCcEEEEEe
Confidence 466777654 799999999999987532 255666777888888888876543
No 32
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=41.72 E-value=71 Score=20.82 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLH 108 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLy 108 (151)
.++.+|.++||+|+++-=+ ..|+ |+.-+-.+++-|.++..|...-+..+....+++
T Consensus 41 ~iL~~l~~~~~~~~~ela~---~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~ 96 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVT---ELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIH 96 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHH---HTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEE
T ss_pred HHHHHHHHcCCcCHHHHHH---HHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEE
Confidence 3567778899999987633 3355 477788899999999999776443333333433
No 33
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.38 E-value=34 Score=25.14 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchh----HHHHHHHHhhccc-eeeE---EeeccCCC
Q 031883 41 YSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKT----HMKIMLKWMRGRK-MLKL---FCNGVGSN 103 (151)
Q Consensus 41 ~tItr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~----HMKimLkWMreRq-~lKL---~CnhvG~~ 103 (151)
.|+=+.|.++|.+ +|+|+.+. ++..|+.|+..|. |.+-+-|=++..- .|.. .|.--|..
T Consensus 10 ~T~Re~Ii~lL~~-~plta~ei---~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~p~~C~~CG~~ 76 (105)
T 2gmg_A 10 ATRREKIIELLLE-GDYSPSEL---ARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIKPAQCRKCGFV 76 (105)
T ss_dssp HHHHHHHHHHTTT-SCBCTTHH---HHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEECCCBBTTTCCB
T ss_pred ccHHHHHHHHHHc-CCCCHHHH---HHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEECcChhhCcCe
Confidence 5677889999985 99999874 6777999898888 6666666665322 2332 38877765
No 34
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.28 E-value=70 Score=22.73 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=38.6
Q ss_pred HHHHHHHHh--CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQH--GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeH--GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+++|.++ +|+|+.+.++.+++.+-+ -|..=.-.-|+.|.+.-+|+-+-.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEE--IGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHCCcEEEEEe
Confidence 467777654 799999999999987532 255666778899999999876643
No 35
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=40.39 E-value=78 Score=20.92 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
.++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|-++..|..
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l---~~----~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRL---II----TGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CC----CHHHHHHHHHHHHHCCCEEe
Confidence 356677889999999865544 44 57889999999999999977
No 36
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A {Mesorhizobium loti}
Probab=40.18 E-value=5.4 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHH----HHHHhCCcchhhhhHHHHH
Q 031883 37 TQQAYSIAQSLYG----IIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 37 ~Eqa~tItr~l~d----IlkeHGPLTVsntW~hake 68 (151)
+|.+..|++.|-+ ||+.||++|++.+++.|-.
T Consensus 178 ~ela~~ia~~l~~~~avLL~nHG~~~~G~tl~eA~~ 213 (270)
T 2z7b_A 178 PDVCADIAESLGSQTVVLMARHGVVNVGKSVREVVF 213 (270)
T ss_dssp HHHHHHHHHHHTTSSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEEcCCceEEEeCCHHHHHH
Confidence 3777888888754 5789999999999887754
No 37
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.95 E-value=23 Score=25.07 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=37.1
Q ss_pred HHHHHHHH-hCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlke-HGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+++|.+ ++|+|+.+.++.+++.+-+ + |..=--.-|+.+.+.-+|+-+-.
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~-i-s~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPN-M-SVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTT-C-CHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC-C-ChhhHHHHHHHHHHCCCEEEEee
Confidence 45666655 6899999999999887432 2 45556677888888888876543
No 38
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=39.72 E-value=39 Score=22.99 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=33.3
Q ss_pred ccc--CCCCChHHHHHHHHHHHHHHHHhCC-cc--hhhhhHHHHHhc
Q 031883 29 RKI--NPKVPTQQAYSIAQSLYGIIKQHGP-LT--VSNTWIHAKDAG 70 (151)
Q Consensus 29 r~I--~pkvP~Eqa~tItr~l~dIlkeHGP-LT--VsntW~hake~g 70 (151)
++. .+.|.||+=..+...|...|+++|+ .| |.+.|..+=+.-
T Consensus 78 ~H~~~~~gV~p~~f~~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~ 124 (134)
T 1tu9_A 78 SHSRAALDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRG 124 (134)
T ss_dssp HTSTTTTCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HhcccCCCcCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 355 6789999999999999999999996 23 457888775543
No 39
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=39.49 E-value=47 Score=26.23 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=33.2
Q ss_pred HHHHHHHHh-CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEe
Q 031883 46 SLYGIIKQH-GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFC 97 (151)
Q Consensus 46 ~l~dIlkeH-GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~C 97 (151)
-|||+|.++ ||+|+++- ++..|++ ..-...+|+.+....+|+...
T Consensus 32 glfd~L~~~~~p~t~~eL---A~~~g~~----~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 32 GVFDLLAEAPGPLDVAAV---AAGVRAS----AHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp THHHHHHHSSSCBCHHHH---HHHHTCC----HHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHhcCCCCCCHHHH---HHhhCcC----HHHHHHHHHHHHHCCCEEEec
Confidence 379999987 79999875 4555654 356778888888888887543
No 40
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=38.69 E-value=33 Score=23.94 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=31.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCcc--hhhhhHHHHH
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGPLT--VSNTWIHAKD 68 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGPLT--VsntW~hake 68 (151)
+....|.||+=..+...|...|+++-+.| +.+.|..+=.
T Consensus 96 H~~~gV~p~~f~~~~~~Ll~~l~~~lg~t~e~~~AW~~~~~ 136 (153)
T 2bk9_A 96 HIPRTVSKESYNQLKGVILDVLTAASSLDESQAATWAKLVD 136 (153)
T ss_dssp HGGGTCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34457899999999999999999997766 6677877644
No 41
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=38.50 E-value=85 Score=20.79 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=34.6
Q ss_pred HHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 47 LYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 47 l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
|+.+|.++||+|+++.=+ ..|+ |+.-+-.+|+-|.++..|...-+
T Consensus 52 iL~~l~~~~~~t~~ela~---~l~~----s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGE---RLYL----DSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp HHHHHHHSCSEEHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHhCCCcCHHHHHH---HhCC----CcccHHHHHHHHHHCCCEeecCC
Confidence 566778899999997644 3354 58889999999999999987643
No 42
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.40 E-value=87 Score=20.91 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEe
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFC 97 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~C 97 (151)
.|+..|.++||+|+++.=+ ..|+ |+.-+-.+++-|.++..|...-
T Consensus 48 ~iL~~l~~~~~~t~~ela~---~l~i----s~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAE---FLST----TKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHH---HTTS----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHH---HHCC----CHHHHHHHHHHHHHCCCEEeeC
Confidence 4567788999999998733 3454 5788888999999999987763
No 43
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.82 E-value=12 Score=25.97 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhcccee
Q 031883 39 QAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKML 93 (151)
Q Consensus 39 qa~tItr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~l 93 (151)
+.++..+.|.++|+++| +|+.+. +++.|++ |.-....|.=|.+-..|
T Consensus 14 ~~~~~~~~IL~lL~~~g-~sa~eL---Ak~LgiS----k~aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG-ATAAQL---TRQLNME----KREVNKALYDLQRSAMV 60 (82)
T ss_dssp CSHHHHHHHHHHHSSST-EEHHHH---HHHSSSC----HHHHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHcC-CCHHHH---HHHHCcC----HHHHHHHHHHHHHCCCE
Confidence 45688899999999998 888764 7777876 44444445444333333
No 44
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=37.81 E-value=46 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeee
Q 031883 47 LYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHS 109 (151)
Q Consensus 47 l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLyt 109 (151)
++.||.-|+|+|-++. ..++|+++-. +++-+.+|..++-.-....+- -.+|.
T Consensus 105 tLaiIAy~QPITR~eI------~~irGv~~~~----~v~~Lle~gLI~e~Gr~~~~G-p~ly~ 156 (219)
T 2z99_A 105 TLAVVAYRQPVTRARV------SAVRGVNVDA----VMRTLLARGLITEVGTDADTG-AVTFA 156 (219)
T ss_dssp HHHHHHHHCSEEHHHH------HHHHTSCCHH----HHHHHHHTTSEEEEEECTTTC-CEEEE
T ss_pred HHHHHHHcCCcCHHHH------HHHHCCCHHH----HHHHHHHCCCEEEccccCCCC-CeEEE
Confidence 6789999999997653 4678888844 455666788887654222222 55664
No 45
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=37.51 E-value=16 Score=25.29 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 45 QSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 45 r~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
+.|.++|+++|.+||++- +++.|++ .-=.+.+|.-+-++..|+.+
T Consensus 5 ~~Il~~L~~~g~vsv~eL---A~~l~VS----~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQL---SARLQTP----QPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHH---HHHTTCC----HHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEEE
Confidence 578999999999999974 4455665 34456666666666666655
No 46
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.88 E-value=1.1e+02 Score=21.67 Aligned_cols=51 Identities=4% Similarity=0.132 Sum_probs=38.5
Q ss_pred HHHHHHHH-hCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlke-HGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+++|.+ ++|+|+.+.++.+++.+.+ -|..=.-..|+.+-+.-+|.-+-.
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKN--TSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTT--CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC--CCHhhHHHHHHHHHHCCcEEEEEe
Confidence 45666665 5899999999999987532 255666778899999999876644
No 47
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.03 E-value=35 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcchhhhhHHHHHh
Q 031883 42 SIAQSLYGIIKQHGPLTVSNTWIHAKDA 69 (151)
Q Consensus 42 tItr~l~dIlkeHGPLTVsntW~hake~ 69 (151)
-+-....++|++++ |+..-+|..++..
T Consensus 18 k~~~~F~~mL~e~~-I~~~s~W~~~~~~ 44 (83)
T 2doe_A 18 KIKSDFFELLSNHH-LDSQSRWSKVKDK 44 (83)
T ss_dssp HHHHHHHHHHHHTT-CCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCCCCcHHHHHHH
Confidence 45567899999999 9999999999987
No 48
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=35.45 E-value=8.3 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHH----HHHHhCCcchhhhhHHHHH
Q 031883 36 PTQQAYSIAQSLYG----IIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 36 P~Eqa~tItr~l~d----IlkeHGPLTVsntW~hake 68 (151)
-.|.+..+++.|-+ |++.||.++++++.+.|-.
T Consensus 190 ~~ela~~i~~~l~~~~avll~nHG~~~~G~~~~eA~~ 226 (274)
T 2v9l_A 190 TDAIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFG 226 (274)
T ss_dssp SHHHHHHHHHHHTTCSEEEETTTEEEEEESSHHHHHH
T ss_pred CHHHHHHHHHHHccCCEEEEcCCCceEecCCHHHHHH
Confidence 35788888888855 6889999999999887654
No 49
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.50 E-value=29 Score=25.30 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHHHHHHH-hCCcchhhhhHHHHHh--ccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQ-HGPLTVSNTWIHAKDA--GISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlke-HGPLTVsntW~hake~--gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+++|.+ ++|+|+.+.++.+++. +-+ + |..=--.-|..+-+..+|.-+-.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~-i-s~aTVYRtL~~L~e~Glv~~i~~ 90 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLN-V-GIATVYRTLNLLEEAEMVTSISF 90 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGC-C-CHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-C-CHHHHHHHHHHHHHCCCEEEEEe
Confidence 45666666 4899999999999987 432 2 45556678899999998876644
No 50
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=34.29 E-value=40 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=23.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhC
Q 031883 31 INPKVPTQQAYSIAQSLYGIIKQHG 55 (151)
Q Consensus 31 I~pkvP~Eqa~tItr~l~dIlkeHG 55 (151)
++|.+.-||.+++...+-++|.++|
T Consensus 52 l~P~l~ee~~~~~vek~~~~i~~~G 76 (77)
T 3zzp_A 52 LNPNLDQSQLQNEKEIIQRALENYG 76 (77)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999988
No 51
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=33.96 E-value=29 Score=27.23 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CcchhhhhHHHHHhccCCC--CchhHHHHHHH-HhhccceeeEEee
Q 031883 36 PTQQAYSIAQSLYGIIKQHG-PLTVSNTWIHAKDAGISGL--NGKTHMKIMLK-WMRGRKMLKLFCN 98 (151)
Q Consensus 36 P~Eqa~tItr~l~dIlkeHG-PLTVsntW~hake~gi~gL--~SK~HMKimLk-WMreRq~lKL~Cn 98 (151)
+.++....++.|.++.+++| ||-|.|-|+-+.++|..|+ ......-..+| .+..-.+|=++|.
T Consensus 77 ~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA~~~gAdGVHLg~~dl~~~~~r~~~~~~~~iG~S~h 143 (243)
T 3o63_A 77 QARDELAACEILADAAHRYGALFAVNDRADIARAAGADVLHLGQRDLPVNVARQILAPDTLIGRSTH 143 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEECTTSSCHHHHHHHSCTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHHHHhCCCEEEecCCcCCHHHHHHhhCCCCEEEEeCC
Confidence 46777888999999999987 8999999999999988763 22111112222 2334566777773
No 52
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.52 E-value=1.2e+02 Score=20.88 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHH-hCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlke-HGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+++|.+ ++|+|+.+.++.+++.+- ++ |+.=--..|+.|.+.-+|.-+-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~-~i-s~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGE-NI-GLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCC-CC-CHhhHHHHHHHHHHCCCEEEEEe
Confidence 46677765 579999999999998743 22 56667778899999999876644
No 53
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=33.28 E-value=75 Score=18.60 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
.|.+.+.++| |+.+. ++..|++ .--+-+|+++.+.+.+.
T Consensus 5 ~l~~~~~~~g--s~~~~---A~~lgis-------~~~vs~~~~~~~~~~l~ 43 (67)
T 2pij_A 5 PLSKYLEEHG--TQSAL---AAALGVN-------QSAISQMVRAGRSIEIT 43 (67)
T ss_dssp EHHHHHHHTC--CHHHH---HHHHTSC-------HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcC--CHHHH---HHHHCcC-------HHHHHHHHcCCCCCCeE
Confidence 4678889999 76643 5666776 34577899999888873
No 54
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=33.06 E-value=81 Score=20.93 Aligned_cols=44 Identities=7% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
.++.+|.++||+|+++.=+ ..|+ |+.-+-.+++-|.++..|...
T Consensus 47 ~iL~~l~~~~~~t~~ela~---~l~i----~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAK---LSLM----EQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHH---HTTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHCCCcCHHHHHH---HHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 3667788999999987643 3354 578888999999999988765
No 55
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=32.65 E-value=51 Score=25.50 Aligned_cols=46 Identities=13% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHh-CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQH-GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeH-GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
-|||+|.++ ||+|+++ =++..|+.. ...+-+..+|+-+....+|..
T Consensus 40 gif~~L~~~~~~~t~~e---la~~~~~~~-~~~~~l~rlLr~L~~~gll~~ 86 (352)
T 1fp2_A 40 NIPNIIQNHGKPISLSN---LVSILQVPS-SKIGNVRRLMRYLAHNGFFEI 86 (352)
T ss_dssp THHHHHHHHTSCEEHHH---HHHHHTCCG-GGHHHHHHHHHHHHHTTSEEE
T ss_pred ChhhhhhhcCCCccHHH---HHHHhCcCC-CChHHHHHHHHHHHhCCeEEE
Confidence 368999998 4999995 355556520 023455666666666666654
No 56
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=32.51 E-value=43 Score=22.96 Aligned_cols=35 Identities=17% Similarity=0.489 Sum_probs=27.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhC-CcchhhhhHH
Q 031883 31 INPKVPTQQAYSIAQSLYGIIKQHG-PLTVSNTWIH 65 (151)
Q Consensus 31 I~pkvP~Eqa~tItr~l~dIlkeHG-PLTVsntW~h 65 (151)
++|.+..||+.++...+-++|.++| -+.=-+.|+.
T Consensus 13 l~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~ 48 (99)
T 3r3t_A 13 IRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGK 48 (99)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCS
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeec
Confidence 5678889999999999999999876 5555566653
No 57
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=31.82 E-value=33 Score=26.61 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHHh-ccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 33 PKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDA-GISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 33 pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake~-gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
.=..++.-..+.+.|.+++ +||++||++. +|+ |+ |..-.--+|.+|-...+.+..
T Consensus 194 ~~~~~~~~~~~~~~l~~~~-~~~~it~a~~----Rd~lg~----SRK~aIplLE~~Dr~g~TrR~ 249 (258)
T 1lva_A 194 FYWHRQALGEAREVIKNLA-STGPFGLAEA----RDALGS----SRKYVLPLLEYLDQVKFTRRV 249 (258)
T ss_dssp BEEEHHHHHHHHHHHHHHH-TTSCBCHHHH----HHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred eEEcHHHHHHHHHHHHHHH-hcCCcCHHHH----HHHhCC----cHHHHHHHHHHHhhcCceeee
Confidence 3456778888889999999 9999999874 554 54 455666888998776666553
No 58
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=31.74 E-value=64 Score=22.55 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=32.1
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCcc--hhhhhHHHHH
Q 031883 29 RKINPKVPTQQAYSIAQSLYGIIKQHGPLT--VSNTWIHAKD 68 (151)
Q Consensus 29 r~I~pkvP~Eqa~tItr~l~dIlkeHGPLT--VsntW~hake 68 (151)
++..+.|.||+=..+...|...|+++-+.| |.+.|+.+=+
T Consensus 96 ~H~~~~V~p~~f~~~~~~Ll~~l~~~lg~t~e~~~AW~k~~~ 137 (151)
T 2c0k_A 96 THHEKKVERRSYNELKDIIIEVVCSCVKLNEKQVHAYHKFFD 137 (151)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456688999999999999999999996666 3477877643
No 59
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=31.26 E-value=57 Score=22.59 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=32.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCcc--hhhhhHHHHHh
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGPLT--VSNTWIHAKDA 69 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGPLT--VsntW~hake~ 69 (151)
+....|.||+=..+...|.+.|+++-+.| +.+.|..+=+.
T Consensus 98 H~~~gV~p~~f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~~ 139 (152)
T 3pt8_B 98 HFNRGIRIKELRDGYGTLLRYLEDHCHVEGSTKNAWEDFIAY 139 (152)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999996666 66788876544
No 60
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.21 E-value=1.1e+02 Score=20.05 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.|+.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...-+
T Consensus 41 ~iL~~l~~~~~~t~~ela~~---l~~----s~~tvs~~l~~Le~~glv~r~~~ 86 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAER---MEV----KPSAVTLMADRLEQKNLIARTHN 86 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHH---HTS----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEeecCC
Confidence 35667788999999977443 354 57888899999999998877633
No 61
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=31.01 E-value=48 Score=22.73 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=28.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCC-cchhhhhHH
Q 031883 31 INPKVPTQQAYSIAQSLYGIIKQHGP-LTVSNTWIH 65 (151)
Q Consensus 31 I~pkvP~Eqa~tItr~l~dIlkeHGP-LTVsntW~h 65 (151)
++|.+..||+.++...+-++|.++|- +.=-+.|+.
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~ 45 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGL 45 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 56788999999999999999999874 555566653
No 62
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=30.85 E-value=1.2e+02 Score=20.14 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=35.8
Q ss_pred HHHHHHHHHHh------CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcc
Q 031883 44 AQSLYGIIKQH------GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKK 105 (151)
Q Consensus 44 tr~l~dIlkeH------GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~Kq 105 (151)
-+.|++.|+++ ||.||.+. ++..|+|- .=.+.-|.-+-+.-.|+..-.--|..++
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EI---a~~lgvS~----~TVrr~L~~Le~kG~I~R~~ggr~~~~~ 66 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDI---ADAAGLSI----YQVRLYLEQLHDVGVLEKVNAGKGVPGL 66 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHH---HHHHTCCH----HHHHHHHHHHHHTTSEEEESCSSSSCCE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHH---HHHHCCCH----HHHHHHHHHHHHCCcEEecCCCCCcHHH
Confidence 35678888887 99999975 45557752 2255556667777777776544444444
No 63
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Probab=30.84 E-value=6.1 Score=30.10 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.0
Q ss_pred HHHHhCCcchhhhhHHHHHh
Q 031883 50 IIKQHGPLTVSNTWIHAKDA 69 (151)
Q Consensus 50 IlkeHGPLTVsntW~hake~ 69 (151)
||+.||+++++++++.|-..
T Consensus 167 ll~nHG~~~~G~~~~eA~~~ 186 (231)
T 1k0w_A 167 LVHSHGPFAWGKNAEDAVHN 186 (231)
T ss_dssp EETTTEEEEEESSHHHHHHH
T ss_pred EEcCCCCeEecCCHHHHHHH
Confidence 45689999999998877643
No 64
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=30.58 E-value=47 Score=26.07 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHH-hCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 47 LYGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 47 l~dIlke-HGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
|||+|.+ .||+|+++- ++..|+. .+.+..+|+=+-...+|..
T Consensus 40 ifd~L~~~~~~~t~~eL---A~~~g~~----~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEI---SGRTGLT----RYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp HHHHHHTCTTCBCHHHH---HHHHTCC----HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhcCCCCCHHHH---HHHhCcC----HHHHHHHHHHHhhCCCeEe
Confidence 8999998 589999975 6666754 4567777777767777753
No 65
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=30.27 E-value=40 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=16.0
Q ss_pred cCCCCChHHHHHHH----HHHHHHHHHh
Q 031883 31 INPKVPTQQAYSIA----QSLYGIIKQH 54 (151)
Q Consensus 31 I~pkvP~Eqa~tIt----r~l~dIlkeH 54 (151)
|| .||++|.+.|+ ++|..-|+||
T Consensus 45 ln-~V~~~qR~~iAe~Fa~AL~~Sv~~~ 71 (76)
T 2jr2_A 45 IA-QVPESKRVAVVDNFTKALKQSVLEH 71 (76)
T ss_dssp HT-TSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH-hCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 56 89999976665 5555666666
No 66
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=30.05 E-value=1.1e+02 Score=19.74 Aligned_cols=59 Identities=7% Similarity=0.226 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecC
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTL 111 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~ 111 (151)
.+..+|-++||+|+++.-+++..- .|+ ++.-+..+|+=|-++-.|...-+ | ..++|...
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~--~~~-~~~Tvt~~l~rLe~kGlv~R~~~--~--r~~~~~~~ 72 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKY--KEV-SDKTIRTLITRLYKKEIIKRYKS--E--NIYFYSSN 72 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTT--SCC-CHHHHHHHHHHHHHTTSEEEEEE--T--TEEEEEEC
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhc--CCC-ChhhHHHHHHHHHHCCceEEEeC--C--CeEEEEEe
Confidence 466788889999999998887532 233 47888999999999999987653 3 46777643
No 67
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.92 E-value=44 Score=24.33 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhC-CcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceee
Q 031883 41 YSIAQSLYGIIKQHG-PLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLK 94 (151)
Q Consensus 41 ~tItr~l~dIlkeHG-PLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lK 94 (151)
+.|-..|.+.+++|| |.|+.+- ++..|++ |.+ ....|+=|.+.-.|.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~ei---a~~lgl~---~~t-v~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREI---ARRFRIT---PRG-ALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHH---HHHHTSC---HHH-HHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHH---HHHcCCC---cHH-HHHHHHHHHHCCCEE
Confidence 356677888888999 9999876 4445665 444 555666665555543
No 68
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=29.73 E-value=65 Score=20.65 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
.|+..|. +||+|+++--+.+ |++-=+=-+|++.| .+..+|..
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l---~is~~tvs~~L~~L----~~~Glv~~ 68 (102)
T 3pqk_A 27 MLVCTLV-EGEFSVGELEQQI---GIGQPTLSQQLGVL----RESGIVET 68 (102)
T ss_dssp HHHHHHH-TCCBCHHHHHHHH---TCCTTHHHHHHHHH----HHTTSEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHH---CcCHHHHHHHHHHH----HHCCCeEE
Confidence 4566664 4999999865444 76644444565554 55566643
No 69
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.66 E-value=68 Score=20.83 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhC---CcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 43 IAQSLYGIIKQHG---PLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 43 Itr~l~dIlkeHG---PLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
+-+.|+++|+++| ++|+.+- +++.|++ ++--...|.=|.+.-.|+.
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eL---A~~Lgvs----~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDL---SGKLGTP----KKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHH---HHHHCCC----HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEe
Confidence 3477899999999 9999874 6666765 4445555555655555543
No 70
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=29.66 E-value=88 Score=21.88 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=32.7
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhCC---cc--hhhhhHHHH
Q 031883 28 VRKINPKVPTQQAYSIAQSLYGIIKQHGP---LT--VSNTWIHAK 67 (151)
Q Consensus 28 ~r~I~pkvP~Eqa~tItr~l~dIlkeHGP---LT--VsntW~hak 67 (151)
-++..+.|.||+=..+...|...|+++-+ .| |.+.|..+=
T Consensus 101 ~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~~t~e~~~AW~~~~ 145 (154)
T 4b4y_A 101 AMHTKKKVPTELFGKLGGCILTQVVKRVSEAKWSEEKKEAWLKAY 145 (154)
T ss_dssp GGSCTTTSCTHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHH
T ss_pred HHHccCCCChHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999999965 44 678887663
No 71
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=29.16 E-value=51 Score=18.87 Aligned_cols=31 Identities=3% Similarity=0.040 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcchhhhhH
Q 031883 34 KVPTQQAYSIAQSLYGIIKQHGPLTVSNTWI 64 (151)
Q Consensus 34 kvP~Eqa~tItr~l~dIlkeHGPLTVsntW~ 64 (151)
....||-+.++..|++.+.++=-+.-+.++-
T Consensus 13 g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v 43 (63)
T 2x4k_A 13 GRSDEQLKNLVSEVTDAVEKTTGANRQAIHV 43 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 4588999999999999999983333444443
No 72
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=28.75 E-value=46 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHHh
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDA 69 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake~ 69 (151)
+....|.||+=..+...|...|++|-+- .+.|+.+=+.
T Consensus 96 H~~~~V~p~~f~~~~~~Ll~~l~~~lg~--~~AW~~~~~~ 133 (142)
T 1b0b_A 96 HKARGISAGQLEAAFKVLAGFMKSYGGD--EGAWTAVAGA 133 (142)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHGGGGTCC--HHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHH
Confidence 4456799999999999999999999775 8889877554
No 73
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.48 E-value=56 Score=21.83 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhC---CcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 43 IAQSLYGIIKQHG---PLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 43 Itr~l~dIlkeHG---PLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
+-+.|+++|++.| ++|+.+- +++.|++ ++--..-|.=|.+.-.|..
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eL---A~~Lgvs----r~tV~~~L~~Le~~G~I~~ 59 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDL---SGKLGTP----KKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHH---HHHHTCC----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEe
Confidence 4577999999999 8999864 6667765 4555555555655555543
No 74
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=28.27 E-value=77 Score=22.47 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHH
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake 68 (151)
+..--|.|++=..+...|...|++||+-.+...|+.+=+
T Consensus 87 H~~~gV~p~~F~~l~~~ll~~L~~~~~~e~~~AW~k~~~ 125 (137)
T 3lb2_A 87 KQHSSLTTGNFEKLFVALVEYMRASGQSFDSQSWDRFGK 125 (137)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 334459999999999999999999998778888987643
No 75
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=28.22 E-value=1.4e+02 Score=20.25 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHH-hCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecC
Q 031883 46 SLYGIIKQ-HGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTL 111 (151)
Q Consensus 46 ~l~dIlke-HGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~ 111 (151)
.|+.+|-+ +||+|+++.-+++.+- .++ ++.-+-.+|+=|-++..|...-+ ...++|...
T Consensus 13 ~vL~~L~~~~~~~t~~el~~~l~~~--~~~-~~~Tvt~~l~rLe~kGlv~r~~~----~r~~~~~~~ 72 (138)
T 2g9w_A 13 AVMDHLWSRTEPQTVRQVHEALSAR--RDL-AYTTVMAVLQRLAKKNLVLQIRD----DRAHRYAPV 72 (138)
T ss_dssp HHHHHHHTCSSCEEHHHHHHHHTTT--CCC-CHHHHHHHHHHHHHTTSEEEEC-------CCEEEES
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcc--CCC-CHHHHHHHHHHHHHCCCEEEEec----CCeEEEEeC
Confidence 46778888 5999999998888643 233 57889999999999999987642 347777643
No 76
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=28.00 E-value=1.3e+02 Score=19.66 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEe
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFC 97 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~C 97 (151)
.++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...-
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l---~~----~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKM---YL----ACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CC----CchhHHHHHHHHHHCCCeeecC
Confidence 356677789999999875443 44 5788888999999999887753
No 77
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=27.97 E-value=7.3 Score=29.43 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHH----HHHHhCCcchhhhhHHHHH
Q 031883 38 QQAYSIAQSLYG----IIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 38 Eqa~tItr~l~d----IlkeHGPLTVsntW~hake 68 (151)
|-+..|++.|-+ ||+.||+++++.+++.|-.
T Consensus 135 ~la~~i~~~l~~~~avll~nHG~~~~G~~~~eA~~ 169 (215)
T 1e4c_P 135 ELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169 (215)
T ss_dssp HHHHHHHHHTSSCSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHhccCCEEEEcCCCcEEEeCCHHHHHH
Confidence 556666666533 5678999999999887654
No 78
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.93 E-value=90 Score=21.18 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 36 PTQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 36 P~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
+.+--+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 10 ~~~tr~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 45 (189)
T 3vp5_A 10 SDEKRNRVYDACLNEFQTHSFHEAKIMHI---VKALDIP 45 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTTCCHHHH---HHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHCCcccccHHHH---HHHhCCC
Confidence 445667899999999999996 777764 7777887
No 79
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=27.87 E-value=52 Score=22.56 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhhhccccc--------cccCCCCChHHHHHHHHHHHHHHHHhC-Ccch
Q 031883 11 METLVRYYSSSRKAAVNV--------RKINPKVPTQQAYSIAQSLYGIIKQHG-PLTV 59 (151)
Q Consensus 11 ~~~~~R~fs~~rk~av~~--------r~I~pkvP~Eqa~tItr~l~dIlkeHG-PLTV 59 (151)
-++|.++|.-++..|..+ +-+--.-|.|.|++-...+.+.-++|| ||-.
T Consensus 19 i~vL~~vf~~~~~~A~~iml~vH~~G~avv~~~~~e~AE~k~~~v~~~ar~~~~PL~~ 76 (81)
T 3o1f_A 19 IDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAXVNKYARENEHPLLC 76 (81)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHHHHHHHHHHHcCCCceE
Confidence 467888887777766543 333445679999999999999999999 8853
No 80
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=27.79 E-value=9.9 Score=30.42 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHH----HHHHhCCcchhhhhHHHH
Q 031883 36 PTQQAYSIAQSLYG----IIKQHGPLTVSNTWIHAK 67 (151)
Q Consensus 36 P~Eqa~tItr~l~d----IlkeHGPLTVsntW~hak 67 (151)
-.|++..|++.|-+ ||+.||++|++.+.+.|-
T Consensus 168 ~~el~~~i~~~l~~~~avlL~nHG~~~~G~tl~eA~ 203 (273)
T 3ocr_A 168 DLSERERLVADLGDKSVMILRNHGLLTGGVSVEHAI 203 (273)
T ss_dssp CHHHHHHHHHHHTTCSEEEETTTEEEEEESSHHHHH
T ss_pred CHHHHHHHHHHhCcCCEEEEcCCceEEecCCHHHHH
Confidence 45778888887744 689999999998877654
No 81
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=27.64 E-value=64 Score=20.28 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHH
Q 031883 32 NPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 32 ~pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake 68 (151)
.-+...||-+.+++.|++.+.++=-+...+++--+.|
T Consensus 9 ~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e 45 (76)
T 1gyx_A 9 PRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQ 45 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEE
Confidence 3456899999999999999999844444554443333
No 82
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=27.44 E-value=91 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 36 PTQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 36 P~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
+.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~I---A~~agvs 47 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLRKGFVGVGLQEI---LKTSGVP 47 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSTTCCHHHH---HHHHTCC
T ss_pred chhhHHHHHHHHHHHHHHcCCccCCHHHH---HHHhCCC
Confidence 446668899999999999996 888764 6777776
No 83
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.29 E-value=1.5e+02 Score=20.24 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=38.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 32 NPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 32 ~pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
...+.+.|.. |+.+|.++||+|+++.=+ ..|+ |+.-+-.+++-|.++..|...-+
T Consensus 40 ~~~lt~~~~~-----iL~~L~~~~~~t~~eLa~---~l~i----s~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 40 DENITIPQFR-----TLVILSNHGPINLATLAT---LLGV----QPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp CSSCCHHHHH-----HHHHHHHHCSEEHHHHHH---HHTS----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCCHHHHH-----HHHHHHHcCCCCHHHHHH---HhCC----CHHHHHHHHHHHHHCCCEEeccC
Confidence 3345555543 556778899999998644 3454 47788889999999999876533
No 84
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=27.08 E-value=52 Score=19.10 Aligned_cols=34 Identities=3% Similarity=0.034 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHH
Q 031883 35 VPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 35 vP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake 68 (151)
...||-+.+++.|++.+.++=-+.-.+++-.+.|
T Consensus 11 rs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 11 RTDEQKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 3789999999999999999855555565544443
No 85
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=26.96 E-value=11 Score=28.93 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHH----HHHHhCCcchhhhhHHHHHh
Q 031883 35 VPTQQAYSIAQSLYG----IIKQHGPLTVSNTWIHAKDA 69 (151)
Q Consensus 35 vP~Eqa~tItr~l~d----IlkeHGPLTVsntW~hake~ 69 (151)
.-.|.+..|++.|-+ |++.||.++++++++.|-..
T Consensus 171 g~~ela~~i~~~l~~~~avll~nHG~~~~G~~~~eA~~~ 209 (238)
T 1pvt_A 171 GSVELGLKTVEKSEGKDAVLWDKHGVVAFGKDVAEAYDR 209 (238)
T ss_dssp TCHHHHHHHHHHTSSCSEEEETTSCEEEEESSHHHHHHH
T ss_pred CcHHHHHHHHHHhccCCEEEEcCCCceEecCCHHHHHHH
Confidence 344677777777633 57899999999998877653
No 86
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=26.63 E-value=1.1e+02 Score=20.25 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 35 VPTQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 35 vP~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
-+.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~I---a~~agvs 49 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSEL---SLRSGLN 49 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHH---HHHHCCC
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHH---HHHhCCC
Confidence 3445667899999999999996 888875 7777776
No 87
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=26.46 E-value=66 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 39 QAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 39 qa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 41 (206)
T 3dew_A 9 CRSRLMEVATELFAQKGFYGVSIREL---AQAAGAS 41 (206)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHH---HHHhCCC
Confidence 456788999999999995 888874 7788886
No 88
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=26.20 E-value=70 Score=23.97 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLK 94 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lK 94 (151)
-|||+|.+ ||+|+++ =++..|++ .+-+..+|+-+....+|.
T Consensus 30 ~i~~~l~~-~~~t~~e---la~~~~~~----~~~l~r~L~~L~~~g~l~ 70 (335)
T 2r3s_A 30 NVFTAISQ-GIESSQS---LAQKCQTS----ERGMRMLCDYLVIIGFMT 70 (335)
T ss_dssp THHHHHTT-SEECHHH---HHHHHTCC----HHHHHHHHHHHHHTTSEE
T ss_pred ChHHHHhc-CCCCHHH---HHHHhCCC----chHHHHHHHHHHhcCCeE
Confidence 36888986 9999985 35555664 567777788777888775
No 89
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=26.18 E-value=1.3e+02 Score=19.23 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
.++..|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...
T Consensus 35 ~iL~~l~~~~~~~~~ela~~---l~i----s~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQER---LQI----DRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHH---HTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEEec
Confidence 36777888999999876443 354 688889999999999988765
No 90
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=26.07 E-value=24 Score=26.65 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.5
Q ss_pred HHHHHHHHHhCCcch
Q 031883 45 QSLYGIIKQHGPLTV 59 (151)
Q Consensus 45 r~l~dIlkeHGPLTV 59 (151)
+.|.+++||||||-|
T Consensus 190 k~~~~l~k~~~~~~~ 204 (204)
T 1yzv_A 190 KTIAPLMKQTHPIRI 204 (204)
T ss_dssp HHHHHHHHSCCSSCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 578889999999854
No 91
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=26.04 E-value=80 Score=21.79 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=31.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCC-cc--hhhhhHHHHHh
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGP-LT--VSNTWIHAKDA 69 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGP-LT--VsntW~hake~ 69 (151)
+....|.||+=..+...|...|+++-+ .| |.+.|..+=..
T Consensus 99 H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~t~e~~~AW~~~~~~ 141 (150)
T 1x46_A 99 HKGRGVTAAHFEEFETALEAFLESHASGYNAGTKKAWDSAFNN 141 (150)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 334578999999999999999999987 44 45788876543
No 92
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=26.02 E-value=1.4e+02 Score=19.32 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...-+
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l---~~----s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLL---GV----AKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CC----CchhHHHHHHHHHHCCCeeecCC
Confidence 356677789999999875443 54 57888899999999999877543
No 93
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=25.58 E-value=1.1e+02 Score=18.03 Aligned_cols=34 Identities=21% Similarity=0.528 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHh
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWM 87 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWM 87 (151)
.|.+.+++||+ ..|..+.+. |..++-.-+-.||.
T Consensus 13 ~L~~~v~~~G~----~~W~~Ia~~----~~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 13 KLKKLVEQNGT----DDWKVIANY----LPNRTDVQCQHRWQ 46 (52)
T ss_dssp HHHHHHHHHCS----SCHHHHHHT----STTCCHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCHHHHHHH----cCCCCHHHHHHHHH
Confidence 57788899997 469988765 23345555556664
No 94
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=25.50 E-value=46 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=24.0
Q ss_pred HhhhhhhccccccccCCCCChHHHHHHHHHHHHHHHH
Q 031883 17 YYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQ 53 (151)
Q Consensus 17 ~fs~~rk~av~~r~I~pkvP~Eqa~tItr~l~dIlke 53 (151)
||||.-=+-.++| -+|.|+.++||..|.|-|.+
T Consensus 10 ~~~~~~MPhlr~r----gi~~e~v~~lS~~Lid~La~ 42 (122)
T 1u9d_A 10 YFSSNAMPHLRFR----AVEAHIVESLVPTLLNELSS 42 (122)
T ss_dssp TBTTCCCCEEEEE----SSCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCceEEEC----CCCHHHHHHHhHHHHHHHHH
Confidence 7885443334443 36899999999999998875
No 95
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=25.34 E-value=1.4e+02 Score=19.18 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=35.4
Q ss_pred HHHHHHHHhC--CcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHG--PLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHG--PLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.++.+|.++| |+|+++.=+ ..|+ |+.-+-.+++-|.++..|...-+
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~---~l~~----~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLES---EFSI----KSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHCCCCCcCHHHHHH---HHCC----CcchHHHHHHHHHHCCCEEeeCC
Confidence 3566777888 999998744 4455 57889999999999999977643
No 96
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=25.33 E-value=1.1e+02 Score=18.54 Aligned_cols=35 Identities=17% Similarity=0.555 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHh
Q 031883 45 QSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWM 87 (151)
Q Consensus 45 r~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWM 87 (151)
+.|.+.+.+||+ +.|..+.+. |..++-.-+-.||.
T Consensus 17 ~~L~~~v~~~G~----~~W~~Ia~~----~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 17 EQLRALVRQFGQ----QDWKFLASH----FPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHHHHTCT----TCHHHHHHH----CSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCHHHHHHH----ccCCCHHHHHHHHH
Confidence 457788999996 579988776 23345555666664
No 97
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.33 E-value=1.6e+02 Score=19.74 Aligned_cols=46 Identities=4% Similarity=-0.055 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.++.+|.++||+|+++- ++..|+ |+.-+-.+++-|.++..|...-+
T Consensus 54 ~vL~~l~~~~~~t~~eL---a~~l~~----~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 54 PFLMRLYREDGINQESL---SDYLKI----DKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp HHHHHHHHSCSEEHHHH---HHHHTC----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHCCCCCHHHH---HHHHCC----CHHHHHHHHHHHHHCCCEEEecC
Confidence 45667788999999986 444465 47889999999999999977643
No 98
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=25.31 E-value=72 Score=22.37 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=28.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhC-CcchhhhhH
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHG-PLTVSNTWI 64 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHG-PLTVsntW~ 64 (151)
=++|.+.-||..++...+-++|.++| -++-.+.|+
T Consensus 51 Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG 86 (96)
T 2kjw_A 51 VLNPNLDQSQLALEKEIIQRALENYGARVEKVEELG 86 (96)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECC
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 47788999999999999999999987 466566664
No 99
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=25.20 E-value=81 Score=20.90 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 37 TQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 37 ~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 45 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDI---IALSEVG 45 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 34456789999999999995 888875 7788886
No 100
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.12 E-value=70 Score=18.52 Aligned_cols=33 Identities=6% Similarity=0.138 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHH
Q 031883 36 PTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 36 P~Eqa~tItr~l~dIlkeHGPLTVsntW~hake 68 (151)
..||-+.+++.|++.+.++=-+.-.+++-.+.|
T Consensus 12 s~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 12 TDEQKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 789999999999999999844444555544433
No 101
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=25.06 E-value=47 Score=23.54 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceee
Q 031883 43 IAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLK 94 (151)
Q Consensus 43 Itr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lK 94 (151)
+-+.|.++|.++|++|+.+- +++.|++.=+ ...-++=|.+..+++
T Consensus 4 ~d~~il~~L~~~~~~s~~~l---a~~lg~s~~t----v~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADL---AKKVGLSTTP----CWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHH---HHHHTCCHHH----HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCCCCCHHHH---HHHHCcCHHH----HHHHHHHHHHCCCee
Confidence 45689999999999987764 4455766433 333344455666665
No 102
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=24.65 E-value=37 Score=21.60 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
.|+..|.+ ||+|+++-=+.+ |++ +.-...-|+-|.+...|..
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l---~is----~~tvs~~L~~L~~~Glv~~ 68 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKL---QLS----QSALSQHLAWLRRDGLVTT 68 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHH---TCC----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhc-CCCCHHHHHHHH---CcC----HHHHHHHHHHHHHCCCeEE
Confidence 56777877 999999765444 664 3334444555566666654
No 103
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=24.49 E-value=8 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH-----HHHHhCCcchhhhhHHHHH
Q 031883 38 QQAYSIAQSLYG-----IIKQHGPLTVSNTWIHAKD 68 (151)
Q Consensus 38 Eqa~tItr~l~d-----IlkeHGPLTVsntW~hake 68 (151)
|.+..|++.|-+ ||+.||++|++.+.+.|-.
T Consensus 167 ela~~i~~~l~~~~~avlL~nHG~~~~G~t~~eA~~ 202 (222)
T 3m4r_A 167 TLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGKEAYD 202 (222)
T ss_dssp HHHHHHHHHCCTTCSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCEEECCCHHHHHH
Confidence 777778777742 5789999999999887654
No 104
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=24.36 E-value=81 Score=21.01 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 39 QAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 39 qa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 27 ~r~~Il~aA~~l~~~~G~~~~t~~~I---a~~agvs 59 (217)
T 3mvp_A 27 KRNKILQVAKDLFSDKTYFNVTTNEI---AKKADVS 59 (217)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHH---HHHhCCC
Confidence 356788999999999995 888874 6777775
No 105
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=24.32 E-value=91 Score=21.67 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=31.0
Q ss_pred cccccccCCCCChHH-HHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 25 AVNVRKINPKVPTQQ-AYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 25 av~~r~I~pkvP~Eq-a~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
-+++...-++...++ .+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 14 ~~~~~~mM~r~~~~~~r~~Il~AA~~lf~~~G~~~~t~~~I---A~~aGvs 61 (217)
T 3hta_A 14 LVPRGSHMPRRHDPERRQRIIDAAIRVVGQKGIAGLSHRTV---AAEADVP 61 (217)
T ss_dssp CCCTTSSSCGGGSHHHHHHHHHHHHHHHHHHTGGGCCHHHH---HHHHTCC
T ss_pred CCcchhhccCCCchhHHHHHHHHHHHHHHHcCcccCCHHHH---HHHcCCC
Confidence 344444434433333 67799999999999996 788865 6777776
No 106
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.28 E-value=81 Score=20.52 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccCC------CC-chhHH
Q 031883 38 QQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGISG------LN-GKTHM 80 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~g------L~-SK~HM 80 (151)
+-.+.|-++..+++.++|. +||.+. ++++|++- -. ||..+
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs~~t~Y~~F~~sK~~L 54 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQI---VKESGAPKGSLYHFFPNGKEEL 54 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHCCCSCHHHHSTTTCHHHH
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHH---HHHHCCCchhHHHHccccHHHH
Confidence 4457789999999999995 888875 78888874 35 47654
No 107
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=24.24 E-value=77 Score=20.65 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 37 TQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 37 ~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
.+--+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 43 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKV---AKRVGIA 43 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHH---HHHhCCc
Confidence 34567789999999999996 888764 6677775
No 108
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=24.02 E-value=94 Score=23.99 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
-|||+|.+ ||+|+++ =++..|+. .+-+..+|+-+-...+|..
T Consensus 55 gif~~L~~-~~~t~~e---LA~~~g~~----~~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 55 DLFSHMAE-GPKDLAT---LAADTGSV----PPRLEMLLETLRQMRVINL 96 (359)
T ss_dssp THHHHHTT-CCBCHHH---HHHHHTCC----HHHHHHHHHHHHHTTSEEE
T ss_pred CcHHHHcC-CCCCHHH---HHHHhCcC----hHHHHHHHHHHHhCCCeEe
Confidence 46888876 9999985 35555664 5667777777777777654
No 109
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=23.95 E-value=1.2e+02 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHh
Q 031883 33 PKVPTQQAYSIAQSLYGIIKQH 54 (151)
Q Consensus 33 pkvP~Eqa~tItr~l~dIlkeH 54 (151)
.++|.++...++..|-++|.+|
T Consensus 25 ~klp~~~v~~F~~~L~~~L~~~ 46 (130)
T 2z15_A 25 NKLPRRRVNIFGEELERLLKKK 46 (130)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999886
No 110
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=23.93 E-value=1.2e+02 Score=20.00 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
.+..+|.++||+|+++-=+.+ |+ |+.-+-.+++-|.++..|...-+
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l---~~----~~~tvs~~l~~L~~~Glv~r~~~ 85 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERV---FL----DSGTLTPLLKKLEKKDYVVRTRE 85 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHcCCcCHHHHHHHH---CC----ChhhHHHHHHHHHHCCCeEecCC
Confidence 456677889999999865544 54 68899999999999999987644
No 111
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=23.92 E-value=73 Score=22.23 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=28.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhC-CcchhhhhHH
Q 031883 31 INPKVPTQQAYSIAQSLYGIIKQHG-PLTVSNTWIH 65 (151)
Q Consensus 31 I~pkvP~Eqa~tItr~l~dIlkeHG-PLTVsntW~h 65 (151)
++|.+..||..++...+-++|.++| -+.=.+.|+.
T Consensus 16 l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~ 51 (110)
T 2j5a_A 16 VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGM 51 (110)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 5788899999999999999999987 4555566754
No 112
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=23.82 E-value=16 Score=33.64 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhhhHHHHHhcc--CCCCchhHHHHHHHHh
Q 031883 38 QQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGI--SGLNGKTHMKIMLKWM 87 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHGPLTVsntW~hake~gi--~gL~SK~HMKimLkWM 87 (151)
.+|+..-..|..+.-||.||+|.+|+..|--+|- ..-|.|.+...+-+-|
T Consensus 333 pdaekaraqliklyvehnplsvtecytqvvtagqrvaaenqkeqfeyvrqmm 384 (761)
T 4fye_A 333 PDAEKARAQLIKLYVEHNPLSVTECYTQVVTAGQRVAAENQKEQFEYVRQMM 384 (761)
T ss_dssp SSHHHHHHHHHHHHHHHSCCEEEEEEEECSCTTBCSSCTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhhcCCchHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 3455555567788889999999999999988864 4556777665554444
No 113
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.68 E-value=1.5e+02 Score=18.93 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEe
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFC 97 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~C 97 (151)
.|+.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...-
T Consensus 42 ~iL~~l~~~~~~t~~ela~~---l~~----~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRL---TAM----DAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHH---TTC----CHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEEeeC
Confidence 46678889999999976443 344 5788888999999999887753
No 114
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=23.27 E-value=1.4e+02 Score=19.58 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 37 TQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 37 ~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
.+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~I---a~~agvs 50 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGV---ASEAGIA 50 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHH---HHHhCCC
Confidence 56678899999999999997 677764 7777876
No 115
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A*
Probab=23.04 E-value=1.1e+02 Score=21.29 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=27.9
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCcchh-hhhHHH
Q 031883 31 INPKVPTQQAYSIAQSLYGIIKQHGPLTVS-NTWIHA 66 (151)
Q Consensus 31 I~pkvP~Eqa~tItr~l~dIlkeHGPLTVs-ntW~ha 66 (151)
....|.|++=..+...|...|++|.+.|-. +.|+.+
T Consensus 88 ~~~~V~p~~F~~l~~~ll~~l~~~~g~t~~~~AW~k~ 124 (136)
T 1eca_A 88 KPRGVTHDQLNNFRAGFVSYMKAHTDFAGAEAAWGAT 124 (136)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHHHHSCGGGGHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 345688999999999999999999875443 446554
No 116
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=22.81 E-value=67 Score=22.82 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHh-CCcchhhhhHHHHHh
Q 031883 42 SIAQSLYGIIKQH-GPLTVSNTWIHAKDA 69 (151)
Q Consensus 42 tItr~l~dIlkeH-GPLTVsntW~hake~ 69 (151)
+.....|.||+++ .|++..+-|+.+++.
T Consensus 14 SmiDvAy~iL~~~~~~~~F~dL~~eV~~~ 42 (99)
T 2krc_A 14 ALVEIAHELFEEHKKPVPFQELLNEIASL 42 (99)
T ss_dssp CHHHHHHHHHHHHCSCEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 3456778999998 799999999999988
No 117
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.80 E-value=1.1e+02 Score=20.42 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHhC--CcchhhhhHHHHHhccC
Q 031883 37 TQQAYSIAQSLYGIIKQHG--PLTVSNTWIHAKDAGIS 72 (151)
Q Consensus 37 ~Eqa~tItr~l~dIlkeHG--PLTVsntW~hake~gi~ 72 (151)
.+-.+.|-.+..+++.++| -+||.+. ++++|++
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~I---a~~agvs 64 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDI---ADRIGFT 64 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHH---HHHHTCC
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHH---HHHhCCC
Confidence 3456789999999999999 5888865 6777776
No 118
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=22.61 E-value=65 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhC--CcchhhhhHHHHHhccC
Q 031883 39 QAYSIAQSLYGIIKQHG--PLTVSNTWIHAKDAGIS 72 (151)
Q Consensus 39 qa~tItr~l~dIlkeHG--PLTVsntW~hake~gi~ 72 (151)
-.+.|-.+..+++.++| -+||.+. ++++|++
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~I---a~~agvs 45 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDV---IGLANVG 45 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHH---HHHHCCC
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHH---HHHhCCc
Confidence 45678899999999999 5888874 7777876
No 119
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=22.58 E-value=53 Score=22.23 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
.|+..|.++||+|+++.-+ ..|++-=+=-+|++. |.+...|..
T Consensus 46 ~IL~~L~~~~~~s~~eLa~---~l~is~stvs~~L~~----L~~~Glv~~ 88 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIAN---ILGVTIANASHHLRT----LYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHH---HHTCCHHHHHHHHHH----HHHTTSEEE
T ss_pred HHHHHHHHCCCcCHHHHHH---HHCcCHHHHHHHHHH----HHHCCCeEE
Confidence 3577788899999997644 346653333345544 455666654
No 120
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=22.31 E-value=55 Score=21.45 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.5
Q ss_pred HHHHHHhCCcchhh----hhHHHHHhccCCCCchhHHHHHHHHhhccc
Q 031883 48 YGIIKQHGPLTVSN----TWIHAKDAGISGLNGKTHMKIMLKWMRGRK 91 (151)
Q Consensus 48 ~dIlkeHGPLTVsn----tW~hake~gi~gL~SK~HMKimLkWMreRq 91 (151)
.+++.+|| ++... +.+.+++.||. + -|-|.+|+...+|+
T Consensus 18 ~~~F~~~~-id~e~l~~lt~~DL~~lGI~-~---G~RkkIl~ai~~~~ 60 (74)
T 3k1r_B 18 AALLRQEK-IDLEALMLCSDLDLRSISVP-L---GPREKILGAVRRRR 60 (74)
T ss_dssp HHHHHHTT-CCHHHHTTCCHHHHHHTTCC-H---HHHHHHHHHHHHHH
T ss_pred HHHHHHcC-cCHHHHhHCCHHHHHHcCCC-c---chHHHHHHHHHHHH
Confidence 35566666 44333 46678899887 5 58899999988775
No 121
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=22.19 E-value=93 Score=24.09 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHHHHhC-CcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHG-PLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHG-PLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
-|||+|.++| |+|+++- ++..|+.. ...+-+..+|+-+-...+|.-
T Consensus 34 gif~~L~~~~~~~t~~eL---A~~~g~~~-~~~~~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 34 GIADAIHNHGKPMTLSEL---ASSLKLHP-SKVNILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp THHHHHHHHTSCEEHHHH---HHHTTCCT-TTHHHHHHHHHHHHHTTSEEE
T ss_pred ChHhHHhhcCCCcCHHHH---HHhcCCCC-cchHHHHHHHHHHhhCCcEEE
Confidence 4799999985 9999853 55556520 134556677777777777654
No 122
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=22.01 E-value=1.7e+02 Score=18.92 Aligned_cols=45 Identities=4% Similarity=-0.048 Sum_probs=35.3
Q ss_pred HHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEee
Q 031883 47 LYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCN 98 (151)
Q Consensus 47 l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~Cn 98 (151)
++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...-+
T Consensus 34 iL~~l~~~~~~t~~~la~~l---~~----s~~~vs~~l~~Le~~gli~r~~~ 78 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELI---KV----DRTTAARAIKRLEEQGFIYRQED 78 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCcCcCHHHHHHHH---CC----CHhHHHHHHHHHHHCCCEEeecC
Confidence 56777889999999875544 44 57888899999999999987643
No 123
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=21.70 E-value=1.6e+02 Score=19.46 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
.|+.+|.++|++|+++.=+ ..|+ |+.-+-.+++-|.++..|...
T Consensus 53 ~iL~~l~~~~~~t~~ela~---~l~i----s~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSD---RTAM----DKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHhCCCCCHHHHHH---HHCC----CHHHHHHHHHHHHHCCCEeee
Confidence 3566777899999987644 3354 578888999999999888654
No 124
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=21.62 E-value=59 Score=20.78 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
.|++.| +||+|+++- +++.|++ +.-....|+-|.+...|..
T Consensus 35 ~Il~~L--~~~~~~~eL---a~~l~is----~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 35 KILRML--DKGRSEEEI---MQTLSLS----KKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHH--HTTCCHHHH---HHHHTCC----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHH--cCCCCHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEE
Confidence 466777 799999974 4444664 4445556666677777754
No 125
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.55 E-value=1.7e+02 Score=18.95 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF 96 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~ 96 (151)
.++.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...
T Consensus 44 ~iL~~l~~~~~~~~~~la~~---l~~----~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQ---LYL----DSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHT---TTC----CHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHHCCCCCHHHHHHH---HCC----CcCcHHHHHHHHHHCCCEEec
Confidence 35677888999999876443 344 577788899999999888665
No 126
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=21.34 E-value=1.2e+02 Score=20.62 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 38 QQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
+-.+.|-.+-.+++.++|- .||++. ++++|++
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~I---a~~Agvs 43 (197)
T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASISDI---VKKAGTA 43 (197)
T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHH---HHHhCCC
Confidence 3456788889999999985 677764 5666665
No 127
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=21.32 E-value=97 Score=20.73 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=30.1
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCC--cc--hhhhhHHHH
Q 031883 29 RKINPKVPTQQAYSIAQSLYGIIKQHGP--LT--VSNTWIHAK 67 (151)
Q Consensus 29 r~I~pkvP~Eqa~tItr~l~dIlkeHGP--LT--VsntW~hak 67 (151)
++....+.|++=..+...|...|+++-+ .| |.+.|..+=
T Consensus 91 ~H~~~gv~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~ 133 (143)
T 1bin_A 91 VHAQKAVTDPQFVVVKEALLKTIKAAVGDKWSDELSRAWEVAY 133 (143)
T ss_dssp HHTTTTCCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4666789999999999999999999644 33 456677653
No 128
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=21.22 E-value=1.2e+02 Score=22.86 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeE
Q 031883 46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKL 95 (151)
Q Consensus 46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL 95 (151)
-|||+|.+ ||+|+++- ++..|++ .+-+..+|+-+-...+|.-
T Consensus 32 gi~~~l~~-~~~t~~el---a~~~~~~----~~~l~r~Lr~L~~~g~l~~ 73 (334)
T 2ip2_A 32 GLADLIES-GIDSDETL---AAAVGSD----AERIHRLMRLLVAFEIFQG 73 (334)
T ss_dssp THHHHHHT-TCCSHHHH---HHHHTCC----HHHHHHHHHHHHHTTSEEE
T ss_pred CcHHHHhC-CCCCHHHH---HHHhCcC----HHHHHHHHHHHHhCCceEe
Confidence 36888965 99999853 5555663 4666677777767666654
No 129
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=21.17 E-value=84 Score=21.63 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=26.6
Q ss_pred ccCCC----CChHHHHHHHHHHHHHHHHhCCcchh
Q 031883 30 KINPK----VPTQQAYSIAQSLYGIIKQHGPLTVS 60 (151)
Q Consensus 30 ~I~pk----vP~Eqa~tItr~l~dIlkeHGPLTVs 60 (151)
+|.++ ++.++...|.+.|-++.+.+.|.+|.
T Consensus 34 HiTL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~ 68 (171)
T 2d4g_A 34 HLTLRASFECAEEKADQLVSHLRNIAKESHPLVLK 68 (171)
T ss_dssp CBCCSSCEECCGGGHHHHHHHHHHHHHTCCCEEEE
T ss_pred eEEeecCCcCChHHHHHHHHHHHHHHccCCCEEEE
Confidence 89987 56778899999999999999998873
No 130
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=20.99 E-value=1.2e+02 Score=20.79 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=31.6
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCcch--hhhhHHHHH
Q 031883 29 RKINPKVPTQQAYSIAQSLYGIIKQHGPLTV--SNTWIHAKD 68 (151)
Q Consensus 29 r~I~pkvP~Eqa~tItr~l~dIlkeHGPLTV--sntW~hake 68 (151)
++..+.|.||+=..+...|...|+++-+.|- .+.|+.+=.
T Consensus 93 ~H~~~gV~p~~f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~ 134 (141)
T 1ith_A 93 SHDAMGITPKHFGQLLKLVGGVFQEEFSADPTTVAAWGDAAG 134 (141)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999966663 567876543
No 131
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.73 E-value=1.3e+02 Score=20.00 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 37 TQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 37 ~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 50 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEV---AEASGIA 50 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHH---HHHTTSC
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 34567799999999999996 788764 6777775
No 132
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.69 E-value=1e+02 Score=20.63 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhCC--cchhhhhHHHHHhccC
Q 031883 38 QQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKDAGIS 72 (151)
Q Consensus 38 Eqa~tItr~l~dIlkeHGP--LTVsntW~hake~gi~ 72 (151)
+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~I---a~~agvs 44 (216)
T 3f0c_A 11 GKLELIINAAQKRFAHYGLCKTTMNEI---ASDVGMG 44 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHH---HHHhCCC
Confidence 4567888999999999996 788864 6777776
No 133
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.36 E-value=1.5e+02 Score=18.59 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhh
Q 031883 45 QSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMR 88 (151)
Q Consensus 45 r~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMr 88 (151)
+.|.+.+++||+ +.|..+.+. |..++-.-+-.||..
T Consensus 18 ~~L~~~v~~~G~----~~W~~Ia~~----l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 18 EILKAAVMKYGK----NQWSRIASL----LHRKSAKQCKARWYE 53 (70)
T ss_dssp HHHHHHHHHTCS----SCHHHHHHH----STTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHHHHHHH----hcCCCHHHHHHHHHH
Confidence 357788999996 579888765 224566666777754
No 134
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=20.31 E-value=80 Score=22.02 Aligned_cols=38 Identities=8% Similarity=0.088 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCC--cchhhhhHHHHH
Q 031883 30 KINPKVPTQQAYSIAQSLYGIIKQHGP--LTVSNTWIHAKD 68 (151)
Q Consensus 30 ~I~pkvP~Eqa~tItr~l~dIlkeHGP--LTVsntW~hake 68 (151)
+..+.|.||+=..+...|...|+++-+ .|- +.|+.+=.
T Consensus 94 H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~t~-~AW~~~~~ 133 (145)
T 1yhu_A 94 HDPRTIDPVNFVVFRKALIATVAGTFGVCFDV-PAWQGCYN 133 (145)
T ss_dssp HGGGCCCTHHHHHHHHHHHHHHHHHHCTTCCH-HHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHccccCCH-HHHHHHHH
Confidence 445678999999999999999999855 665 88877643
No 135
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=20.22 E-value=1.3e+02 Score=20.45 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHh-CC-c--chhhhhHHHHH
Q 031883 33 PKVPTQQAYSIAQSLYGIIKQH-GP-L--TVSNTWIHAKD 68 (151)
Q Consensus 33 pkvP~Eqa~tItr~l~dIlkeH-GP-L--TVsntW~hake 68 (151)
+.|.||+=..+...|...|+++ |. . .+.+.|..+=+
T Consensus 96 l~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~ 135 (147)
T 1jf3_A 96 KHIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYG 135 (147)
T ss_dssp SCCCGGGHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 4599999999999999999999 52 3 35677876543
No 136
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=20.11 E-value=1.4e+02 Score=17.55 Aligned_cols=35 Identities=23% Similarity=0.546 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHh
Q 031883 45 QSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWM 87 (151)
Q Consensus 45 r~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWM 87 (151)
..|.+.+.+||+ ..|..+.+. |..++---+-.||.
T Consensus 12 ~~L~~~v~~~G~----~~W~~Ia~~----~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 12 QRLIKLVQKYGP----KRWSVIAKH----LKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHHHHHHHCT----TCHHHHHTT----STTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCc----ChHHHHHHH----cCCCCHHHHHHHHH
Confidence 457788899996 469887765 22344445555664
Done!