Query 031884
Match_columns 151
No_of_seqs 189 out of 1785
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-25 1.3E-29 141.2 10.8 76 75-150 17-92 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.2E-24 4E-29 141.4 11.3 77 74-150 3-79 (110)
3 2la6_A RNA-binding protein FUS 99.9 2.7E-23 9.1E-28 132.2 10.5 81 70-150 6-94 (99)
4 1x4e_A RNA binding motif, sing 99.9 1.4E-23 4.8E-28 129.9 7.8 77 74-150 2-78 (85)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 5.8E-23 2E-27 127.5 10.2 77 74-150 3-79 (87)
6 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.4E-23 1.5E-27 127.5 9.6 77 74-150 4-80 (85)
7 3p5t_L Cleavage and polyadenyl 99.9 7.3E-24 2.5E-28 132.7 6.0 73 78-150 2-76 (90)
8 2lkz_A RNA-binding protein 5; 99.9 1.2E-23 4.2E-28 133.1 7.0 78 73-150 5-88 (95)
9 2cqc_A Arginine/serine-rich sp 99.9 8.8E-23 3E-27 128.6 10.9 78 73-150 11-88 (95)
10 2lxi_A RNA-binding protein 10; 99.9 4.6E-24 1.6E-28 134.1 4.8 74 77-150 1-76 (91)
11 3md1_A Nuclear and cytoplasmic 99.9 1E-22 3.4E-27 125.3 10.6 74 77-150 1-74 (83)
12 2e5h_A Zinc finger CCHC-type a 99.9 1.4E-22 4.6E-27 127.6 11.2 78 73-150 12-89 (94)
13 2x1f_A MRNA 3'-END-processing 99.9 9.5E-23 3.2E-27 129.0 10.2 75 76-150 1-75 (96)
14 1x5u_A Splicing factor 3B subu 99.9 9.4E-23 3.2E-27 130.9 10.3 79 72-150 10-88 (105)
15 2cq0_A Eukaryotic translation 99.9 1.4E-22 4.7E-27 129.7 11.0 78 73-150 11-88 (103)
16 2dnz_A Probable RNA-binding pr 99.9 1E-22 3.5E-27 128.4 10.2 77 74-150 2-78 (95)
17 2khc_A Testis-specific RNP-typ 99.9 2.5E-22 8.7E-27 131.5 12.3 78 73-150 36-113 (118)
18 2cpz_A CUG triplet repeat RNA- 99.9 2E-22 6.7E-27 131.5 11.6 79 72-150 20-98 (115)
19 3ns6_A Eukaryotic translation 99.9 1.4E-23 4.8E-28 134.0 5.9 76 75-150 4-86 (100)
20 2dgo_A Cytotoxic granule-assoc 99.9 2.4E-22 8.3E-27 131.0 11.9 79 72-150 10-88 (115)
21 1whw_A Hypothetical protein ri 99.9 1.1E-22 3.9E-27 129.2 9.9 77 74-150 5-81 (99)
22 2dgs_A DAZ-associated protein 99.9 1.7E-22 5.8E-27 128.4 10.6 77 73-150 6-82 (99)
23 2jrs_A RNA-binding protein 39; 99.9 1.3E-22 4.5E-27 131.2 10.2 80 71-150 20-99 (108)
24 4f25_A Polyadenylate-binding p 99.9 1E-22 3.5E-27 133.1 9.6 73 76-150 4-76 (115)
25 2do4_A Squamous cell carcinoma 99.9 2.8E-22 9.4E-27 127.7 11.4 77 73-150 13-89 (100)
26 1p27_B RNA-binding protein 8A; 99.9 1.1E-22 3.8E-27 130.7 9.5 78 73-150 19-96 (106)
27 2dnm_A SRP46 splicing factor; 99.9 1.1E-22 3.7E-27 130.2 9.0 78 73-150 9-86 (103)
28 2div_A TRNA selenocysteine ass 99.9 1.7E-22 5.8E-27 128.4 9.8 76 73-148 5-81 (99)
29 3n9u_C Cleavage and polyadenyl 99.9 1.5E-22 5.2E-27 138.9 10.2 76 75-150 53-130 (156)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.1E-22 3.7E-27 129.9 8.7 78 73-150 8-85 (102)
31 3s7r_A Heterogeneous nuclear r 99.9 3.2E-22 1.1E-26 124.2 10.5 77 73-150 7-83 (87)
32 2cph_A RNA binding motif prote 99.9 2.8E-22 9.7E-27 129.0 10.5 79 72-150 10-90 (107)
33 1s79_A Lupus LA protein; RRM, 99.9 1.1E-22 3.6E-27 130.6 8.3 76 73-150 7-82 (103)
34 1x5t_A Splicing factor 3B subu 99.9 1.3E-22 4.5E-27 128.1 8.7 77 74-150 2-79 (96)
35 1x4h_A RNA-binding protein 28; 99.9 3.6E-22 1.2E-26 129.3 10.7 78 73-150 11-94 (111)
36 3ulh_A THO complex subunit 4; 99.9 4.1E-22 1.4E-26 128.2 10.9 77 73-150 25-101 (107)
37 1oo0_B CG8781-PA, drosophila Y 99.9 2.5E-22 8.5E-27 130.0 9.8 78 73-150 22-99 (110)
38 2dng_A Eukaryotic translation 99.9 6.5E-22 2.2E-26 126.6 11.3 76 73-150 11-86 (103)
39 1x5s_A Cold-inducible RNA-bind 99.9 1.8E-22 6.1E-27 128.9 8.7 78 73-150 8-85 (102)
40 2cpf_A RNA binding motif prote 99.9 2.5E-22 8.5E-27 127.4 9.3 77 74-150 2-81 (98)
41 2dgp_A Bruno-like 4, RNA bindi 99.9 1.4E-22 4.7E-27 130.3 8.1 78 73-150 9-89 (106)
42 2dnh_A Bruno-like 5, RNA bindi 99.9 6.1E-22 2.1E-26 127.0 11.1 77 73-150 11-90 (105)
43 2ywk_A Putative RNA-binding pr 99.9 3.7E-22 1.3E-26 125.8 9.8 77 73-150 12-88 (95)
44 2cpe_A RNA-binding protein EWS 99.9 4.8E-22 1.7E-26 129.2 10.5 78 73-150 11-96 (113)
45 2cqp_A RNA-binding protein 12; 99.9 2.1E-22 7.1E-27 127.7 8.5 78 73-150 11-88 (98)
46 2krb_A Eukaryotic translation 99.9 1.3E-22 4.5E-27 124.5 7.3 72 77-150 1-79 (81)
47 2kxn_B Transformer-2 protein h 99.9 3.6E-22 1.2E-26 133.0 9.8 78 73-150 42-119 (129)
48 2cq4_A RNA binding motif prote 99.9 2.7E-22 9.2E-27 130.6 8.8 76 74-150 22-97 (114)
49 3ucg_A Polyadenylate-binding p 99.9 5.7E-22 1.9E-26 123.5 9.9 74 76-150 5-78 (89)
50 4a8x_A RNA-binding protein wit 99.9 3.1E-22 1.1E-26 124.3 8.7 76 75-150 2-78 (88)
51 2dhg_A TRNA selenocysteine ass 99.9 5.7E-22 2E-26 127.0 10.0 76 74-150 6-83 (104)
52 2d9p_A Polyadenylate-binding p 99.9 6.9E-22 2.4E-26 126.4 10.3 77 72-150 10-86 (103)
53 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.5E-22 5.1E-27 129.1 7.1 79 70-150 12-91 (100)
54 2cqd_A RNA-binding region cont 99.9 1.1E-21 3.9E-26 128.0 11.5 78 72-150 12-89 (116)
55 2ek1_A RNA-binding protein 12; 99.9 1.5E-22 5.1E-27 127.6 7.0 77 74-150 12-88 (95)
56 1wi8_A EIF-4B, eukaryotic tran 99.9 7.9E-22 2.7E-26 126.4 10.5 76 73-150 11-87 (104)
57 1u6f_A Tcubp1, RNA-binding pro 99.9 4E-22 1.4E-26 134.0 9.5 79 72-150 37-115 (139)
58 2dh8_A DAZ-associated protein 99.9 8.5E-22 2.9E-26 126.4 10.5 77 73-150 12-88 (105)
59 2m2b_A RNA-binding protein 10; 99.9 2.1E-22 7E-27 134.4 7.6 77 73-150 19-101 (131)
60 2fy1_A RNA-binding motif prote 99.9 5.6E-22 1.9E-26 129.8 9.1 76 74-150 4-79 (116)
61 2do0_A HnRNP M, heterogeneous 99.9 2.2E-21 7.5E-26 126.2 11.9 77 73-150 11-87 (114)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 1.5E-21 5E-26 131.1 11.1 79 72-150 58-136 (140)
63 2rs2_A Musashi-1, RNA-binding 99.9 6E-22 2.1E-26 128.2 8.8 80 70-150 18-97 (109)
64 2kt5_A RNA and export factor-b 99.9 2.3E-21 7.7E-26 128.1 11.7 77 73-150 31-107 (124)
65 3ex7_B RNA-binding protein 8A; 99.9 6.2E-22 2.1E-26 131.0 8.9 78 73-150 18-95 (126)
66 2dgv_A HnRNP M, heterogeneous 99.9 1.8E-21 6.2E-26 121.9 10.6 75 74-150 5-79 (92)
67 2mss_A Protein (musashi1); RNA 99.9 2E-22 6.9E-27 121.8 6.0 71 79-150 1-71 (75)
68 2cq3_A RNA-binding protein 9; 99.9 5.3E-21 1.8E-25 122.3 12.6 77 72-150 10-86 (103)
69 1sjq_A Polypyrimidine tract-bi 99.9 1.5E-21 5E-26 125.3 9.7 71 74-150 13-85 (105)
70 1wg5_A Heterogeneous nuclear r 99.9 1.3E-21 4.3E-26 125.6 9.2 76 73-150 11-87 (104)
71 2cqi_A Nucleolysin TIAR; RNA r 99.9 4.3E-21 1.5E-25 122.7 11.1 76 73-150 11-86 (103)
72 1p1t_A Cleavage stimulation fa 99.9 6.9E-22 2.4E-26 126.5 7.1 76 75-150 6-81 (104)
73 2dgx_A KIAA0430 protein; RRM d 99.9 1.9E-21 6.5E-26 123.0 9.0 74 74-150 6-83 (96)
74 2cpy_A RNA-binding protein 12; 99.9 1.2E-21 4E-26 127.8 8.2 76 73-150 11-87 (114)
75 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.1E-21 1.4E-25 131.5 11.3 77 74-150 36-112 (156)
76 2cqg_A TDP-43, TAR DNA-binding 99.9 5.9E-21 2E-25 122.1 11.3 77 72-150 10-86 (103)
77 1uaw_A Mouse-musashi-1; RNP-ty 99.9 3.9E-22 1.3E-26 121.0 5.5 72 78-150 1-72 (77)
78 2dgw_A Probable RNA-binding pr 99.9 4.2E-21 1.4E-25 120.2 10.2 75 73-150 6-80 (91)
79 1wez_A HnRNP H', FTP-3, hetero 99.9 1.4E-21 4.9E-26 125.1 8.1 75 73-150 11-85 (102)
80 1x5o_A RNA binding motif, sing 99.9 8.9E-21 3E-25 123.3 12.0 75 73-148 21-95 (114)
81 4f02_A Polyadenylate-binding p 99.9 2.9E-21 1E-25 138.4 10.5 77 74-150 12-88 (213)
82 2kn4_A Immunoglobulin G-bindin 99.9 2.1E-21 7.3E-26 133.0 9.3 78 73-150 66-143 (158)
83 2nlw_A Eukaryotic translation 99.9 1.3E-21 4.5E-26 125.8 7.7 75 74-150 12-93 (105)
84 2db1_A Heterogeneous nuclear r 99.9 1.8E-21 6E-26 127.7 8.4 76 73-150 13-91 (118)
85 2cpi_A CCR4-NOT transcription 99.9 3.3E-21 1.1E-25 125.1 9.4 77 74-150 12-94 (111)
86 2jwn_A Embryonic polyadenylate 99.9 2.9E-21 1E-25 127.4 9.3 74 76-150 35-108 (124)
87 2dnn_A RNA-binding protein 12; 99.9 2.1E-21 7.2E-26 125.7 8.3 74 74-150 13-86 (109)
88 2wbr_A GW182, gawky, LD47780P; 99.9 2.7E-21 9.1E-26 119.5 8.3 71 74-150 4-74 (89)
89 2ki2_A SS-DNA binding protein 99.9 3.4E-22 1.1E-26 124.9 4.3 72 78-150 2-73 (90)
90 1rk8_A CG8781-PA, CG8781-PA pr 99.9 6E-21 2E-25 131.9 10.9 78 73-150 68-145 (165)
91 1x4a_A Splicing factor, argini 99.9 2E-20 6.9E-25 120.8 12.7 75 73-150 18-92 (109)
92 2err_A Ataxin-2-binding protei 99.9 3.8E-21 1.3E-25 124.4 9.1 77 72-150 24-100 (109)
93 1wel_A RNA-binding protein 12; 99.8 1.3E-21 4.4E-26 129.3 7.0 76 74-150 22-97 (124)
94 2hgl_A HNRPF protein, heteroge 99.8 1.1E-21 3.6E-26 131.8 6.6 76 73-150 40-118 (136)
95 1x4b_A Heterogeneous nuclear r 99.8 1.5E-21 5E-26 127.5 7.0 76 74-150 24-99 (116)
96 2cq1_A PTB-like protein L; RRM 99.8 1.4E-20 4.8E-25 120.2 11.4 73 72-150 10-84 (101)
97 2dis_A Unnamed protein product 99.8 2.4E-21 8.1E-26 125.1 7.7 77 74-150 5-85 (109)
98 1x4d_A Matrin 3; structural ge 99.8 2.9E-21 1E-25 123.5 7.9 71 74-150 12-85 (102)
99 2lmi_A GRSF-1, G-rich sequence 99.8 1.3E-21 4.4E-26 126.2 6.3 76 73-150 7-85 (107)
100 3q2s_C Cleavage and polyadenyl 99.8 2.3E-21 7.7E-26 140.7 8.0 76 75-150 66-143 (229)
101 2a3j_A U1 small nuclear ribonu 99.8 4.1E-21 1.4E-25 127.5 8.4 75 73-150 25-103 (127)
102 3r27_A HnRNP L, heterogeneous 99.8 5.9E-21 2E-25 121.4 8.4 72 73-150 17-90 (100)
103 2j8a_A Histone-lysine N-methyl 99.8 2.9E-21 9.9E-26 127.0 6.9 73 78-150 3-89 (136)
104 1iqt_A AUF1, heterogeneous nuc 99.8 1.3E-21 4.4E-26 118.1 4.6 71 79-150 1-71 (75)
105 2fc9_A NCL protein; structure 99.8 1.7E-20 5.8E-25 119.5 9.8 74 73-150 11-84 (101)
106 1wex_A Hypothetical protein (r 99.8 1.3E-20 4.6E-25 121.0 9.3 72 73-150 11-84 (104)
107 2ytc_A PRE-mRNA-splicing facto 99.8 3.4E-20 1.1E-24 114.5 10.7 72 73-150 8-80 (85)
108 2lea_A Serine/arginine-rich sp 99.8 2E-21 6.7E-26 130.4 5.2 78 73-150 43-120 (135)
109 2fc8_A NCL protein; structure 99.8 3.6E-20 1.2E-24 118.1 10.7 75 73-150 11-85 (102)
110 1fj7_A Nucleolin RBD1, protein 99.8 6.1E-22 2.1E-26 126.2 2.4 76 73-150 13-88 (101)
111 2f3j_A RNA and export factor b 99.8 3.1E-20 1.1E-24 129.8 10.6 77 73-150 84-160 (177)
112 2ad9_A Polypyrimidine tract-bi 99.8 1.8E-20 6.2E-25 122.8 8.6 71 74-150 28-100 (119)
113 2dha_A FLJ20171 protein; RRM d 99.8 7.9E-21 2.7E-25 125.5 6.8 74 75-150 21-98 (123)
114 1fxl_A Paraneoplastic encephal 99.8 4.6E-20 1.6E-24 126.3 10.9 75 76-150 1-75 (167)
115 2jvr_A Nucleolar protein 3; RN 99.8 9.3E-21 3.2E-25 123.0 6.9 73 74-150 25-98 (111)
116 2hgm_A HNRPF protein, heteroge 99.8 1.7E-20 5.8E-25 124.3 8.3 75 73-150 38-114 (126)
117 2xs2_A Deleted in azoospermia- 99.8 5.9E-21 2E-25 121.9 5.8 74 74-150 6-79 (102)
118 2xnq_A Nuclear polyadenylated 99.8 5.4E-20 1.8E-24 116.6 10.1 73 70-150 15-88 (97)
119 1x4f_A Matrin 3; structural ge 99.8 1.5E-20 5.2E-25 122.0 7.7 72 73-150 21-95 (112)
120 2cpx_A Hypothetical protein FL 99.8 5.5E-21 1.9E-25 124.5 5.5 78 73-150 21-98 (115)
121 2cpj_A Non-POU domain-containi 99.8 3.5E-20 1.2E-24 117.7 9.2 72 73-150 11-82 (99)
122 1x4c_A Splicing factor, argini 99.8 7.4E-20 2.5E-24 118.1 10.3 70 74-150 12-86 (108)
123 2jvo_A Nucleolar protein 3; nu 99.8 5.5E-20 1.9E-24 118.8 9.5 72 71-150 25-96 (108)
124 3md3_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 123.7 12.2 79 72-150 82-160 (166)
125 2dnq_A RNA-binding protein 4B; 99.8 6.8E-20 2.3E-24 114.4 9.5 70 73-150 4-73 (90)
126 3lqv_A PRE-mRNA branch site pr 99.8 5.8E-20 2E-24 119.6 9.6 74 74-150 5-78 (115)
127 1nu4_A U1A RNA binding domain; 99.8 1.3E-20 4.5E-25 119.1 6.3 74 74-150 5-82 (97)
128 1why_A Hypothetical protein ri 99.8 9.5E-20 3.2E-24 115.3 10.1 72 73-150 13-86 (97)
129 2hgn_A Heterogeneous nuclear r 99.8 6E-21 2.1E-25 128.5 4.7 74 74-150 43-116 (139)
130 1b7f_A Protein (SXL-lethal pro 99.8 5.2E-20 1.8E-24 126.4 9.4 75 76-150 2-76 (168)
131 2lcw_A RNA-binding protein FUS 99.7 7.3E-22 2.5E-26 129.0 0.0 77 74-150 4-88 (116)
132 2la4_A Nuclear and cytoplasmic 99.8 9.2E-20 3.2E-24 116.1 9.7 71 74-150 24-94 (101)
133 2e5j_A Methenyltetrahydrofolat 99.8 7.3E-20 2.5E-24 115.8 8.8 73 73-150 15-87 (97)
134 1x4g_A Nucleolysin TIAR; struc 99.8 1E-19 3.5E-24 117.5 9.2 71 74-150 22-92 (109)
135 1fjc_A Nucleolin RBD2, protein 99.8 2.6E-20 8.9E-25 117.6 6.2 73 73-150 12-84 (96)
136 2g4b_A Splicing factor U2AF 65 99.8 1.7E-19 5.8E-24 124.3 10.7 77 74-150 91-167 (172)
137 1l3k_A Heterogeneous nuclear r 99.8 1.1E-19 3.7E-24 127.8 9.8 77 73-150 9-85 (196)
138 2dnl_A Cytoplasmic polyadenyla 99.8 4.8E-20 1.6E-24 120.1 7.3 70 74-144 5-80 (114)
139 2e5g_A U6 snRNA-specific termi 99.8 3.5E-19 1.2E-23 112.1 11.0 71 74-150 5-75 (94)
140 1whx_A Hypothetical protein ri 99.8 3.9E-20 1.3E-24 120.1 6.2 70 75-150 8-77 (111)
141 2cpd_A Apobec-1 stimulating pr 99.8 6E-19 2E-23 111.9 11.2 70 73-150 11-82 (99)
142 1wf1_A RNA-binding protein RAL 99.8 3.1E-19 1.1E-23 115.4 10.0 69 74-150 24-93 (110)
143 3pgw_S U1-70K; protein-RNA com 99.8 1.9E-19 6.4E-24 141.6 10.7 77 74-150 99-175 (437)
144 2i2y_A Fusion protein consists 99.8 1.5E-19 5E-24 123.0 8.6 74 72-150 68-141 (150)
145 2dgt_A RNA-binding protein 30; 99.8 3.7E-19 1.3E-23 111.5 9.4 70 73-150 6-75 (92)
146 3egn_A RNA-binding protein 40; 99.8 2.9E-20 9.8E-25 125.6 4.5 76 74-150 42-123 (143)
147 2hvz_A Splicing factor, argini 99.8 5.6E-20 1.9E-24 117.1 5.5 68 78-150 1-68 (101)
148 2qfj_A FBP-interacting repress 99.8 3E-19 1E-23 127.3 10.0 76 75-150 123-198 (216)
149 2dgu_A Heterogeneous nuclear r 99.8 3.1E-19 1E-23 114.1 9.0 69 74-150 8-76 (103)
150 2kvi_A Nuclear polyadenylated 99.8 1.7E-19 5.9E-24 113.9 7.6 70 73-150 6-76 (96)
151 2cq2_A Hypothetical protein LO 99.8 1.5E-19 5.2E-24 117.4 7.3 70 74-149 22-98 (114)
152 3beg_B Splicing factor, argini 99.8 8.7E-20 3E-24 119.1 6.2 68 75-149 14-81 (115)
153 2dnp_A RNA-binding protein 14; 99.8 3.9E-19 1.3E-23 110.9 8.9 70 73-150 5-74 (90)
154 2e44_A Insulin-like growth fac 99.8 2.2E-19 7.5E-24 113.2 7.6 73 74-150 12-85 (96)
155 2yh0_A Splicing factor U2AF 65 99.8 8.2E-19 2.8E-23 123.4 11.3 77 74-150 111-187 (198)
156 3md3_A Nuclear and cytoplasmic 99.8 3.1E-19 1E-23 122.1 8.9 72 78-150 1-72 (166)
157 1wg1_A KIAA1579 protein, homol 99.8 2.3E-19 8E-24 111.6 7.4 69 75-150 3-71 (88)
158 2qfj_A FBP-interacting repress 99.8 3.2E-19 1.1E-23 127.1 8.9 76 75-150 26-101 (216)
159 2hzc_A Splicing factor U2AF 65 99.8 3.1E-19 1.1E-23 110.5 7.6 70 74-150 3-83 (87)
160 2cjk_A Nuclear polyadenylated 99.8 5.3E-19 1.8E-23 121.3 9.1 73 76-150 2-74 (167)
161 1b7f_A Protein (SXL-lethal pro 99.8 1.5E-18 5.2E-23 119.0 10.7 77 74-150 86-164 (168)
162 1x5p_A Negative elongation fac 99.8 2.7E-18 9.3E-23 108.5 10.9 70 73-150 11-80 (97)
163 2cqh_A IGF-II mRNA-binding pro 99.8 4E-19 1.4E-23 111.5 6.9 70 74-150 5-76 (93)
164 1fxl_A Paraneoplastic encephal 99.8 1.2E-18 4.3E-23 119.1 9.9 76 74-149 85-160 (167)
165 3tyt_A Heterogeneous nuclear r 99.8 9.8E-19 3.3E-23 124.9 9.7 71 75-150 2-73 (205)
166 1l3k_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 121.6 10.6 75 75-150 102-176 (196)
167 2pe8_A Splicing factor 45; RRM 99.8 2.5E-18 8.7E-23 110.4 10.5 77 74-150 5-87 (105)
168 4f02_A Polyadenylate-binding p 99.8 1.1E-18 3.9E-23 124.9 9.7 73 76-150 102-174 (213)
169 3nmr_A Cugbp ELAV-like family 99.8 1E-18 3.5E-23 120.5 8.8 70 76-145 2-73 (175)
170 2diu_A KIAA0430 protein; struc 99.8 1.2E-18 4E-23 108.7 8.1 66 75-150 6-77 (96)
171 2voo_A Lupus LA protein; RNA-b 99.8 2.6E-18 9E-23 121.6 10.1 73 76-150 108-180 (193)
172 2cjk_A Nuclear polyadenylated 99.8 4.1E-19 1.4E-23 121.9 5.6 74 76-150 86-159 (167)
173 3d2w_A TAR DNA-binding protein 99.8 1.9E-18 6.5E-23 107.8 8.1 68 73-149 7-76 (89)
174 2e5i_A Heterogeneous nuclear r 99.8 7.9E-18 2.7E-22 111.1 11.2 66 78-149 26-94 (124)
175 3zzy_A Polypyrimidine tract-bi 99.8 4E-18 1.4E-22 113.1 9.5 71 75-150 26-99 (130)
176 3nmr_A Cugbp ELAV-like family 99.8 2.5E-18 8.7E-23 118.5 8.8 76 74-150 92-170 (175)
177 1sjr_A Polypyrimidine tract-bi 99.8 1.9E-18 6.6E-23 118.7 8.0 72 75-150 44-117 (164)
178 3pgw_A U1-A; protein-RNA compl 99.7 8.2E-18 2.8E-22 124.7 10.1 75 73-150 5-83 (282)
179 3smz_A Protein raver-1, ribonu 99.7 2.2E-17 7.4E-22 122.5 10.9 77 74-150 92-168 (284)
180 2bz2_A Negative elongation fac 99.7 1.1E-17 3.7E-22 110.1 7.8 69 74-150 36-104 (121)
181 1fje_B Nucleolin RBD12, protei 99.7 1.8E-17 6.2E-22 114.6 8.8 73 73-150 95-167 (175)
182 1wf0_A TDP-43, TAR DNA-binding 99.7 4E-18 1.4E-22 105.9 4.8 68 75-149 3-70 (88)
183 3smz_A Protein raver-1, ribonu 99.7 3.3E-17 1.1E-21 121.5 10.1 77 73-150 180-257 (284)
184 3tyt_A Heterogeneous nuclear r 99.7 1.6E-17 5.3E-22 118.6 7.4 74 74-149 120-195 (205)
185 2adc_A Polypyrimidine tract-bi 99.7 1.8E-17 6.3E-22 119.8 7.6 72 74-150 31-103 (229)
186 2ghp_A U4/U6 snRNA-associated 99.7 2.4E-17 8.3E-22 122.7 8.3 77 73-150 206-284 (292)
187 3sde_A Paraspeckle component 1 99.7 5.7E-17 2E-21 119.3 9.7 72 73-150 18-89 (261)
188 1jmt_A Splicing factor U2AF 35 99.7 1E-17 3.5E-22 107.5 4.4 68 82-150 20-99 (104)
189 3v4m_A Splicing factor U2AF 65 99.7 8.1E-17 2.8E-21 103.4 8.5 77 74-150 2-90 (105)
190 3u1l_A PRE-mRNA-splicing facto 99.7 3.1E-17 1E-21 119.3 7.2 65 74-144 131-204 (240)
191 1fje_B Nucleolin RBD12, protei 99.7 4.4E-18 1.5E-22 117.7 2.5 76 73-150 9-84 (175)
192 1qm9_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 115.3 6.1 70 76-150 2-72 (198)
193 2dit_A HIV TAT specific factor 99.7 4.5E-16 1.5E-20 100.9 10.6 74 73-150 11-95 (112)
194 3pgw_A U1-A; protein-RNA compl 99.7 2.1E-16 7.1E-21 117.1 10.1 73 73-150 203-276 (282)
195 2ghp_A U4/U6 snRNA-associated 99.7 2.1E-16 7.1E-21 117.7 9.2 76 72-150 36-111 (292)
196 3ue2_A Poly(U)-binding-splicin 99.7 3.1E-16 1.1E-20 102.6 8.6 76 75-150 18-102 (118)
197 3sde_A Paraspeckle component 1 99.7 3E-16 1E-20 115.5 9.5 99 50-149 53-171 (261)
198 1qm9_A Polypyrimidine tract-bi 99.7 5.1E-16 1.7E-20 109.4 9.4 72 74-150 117-190 (198)
199 2g4b_A Splicing factor U2AF 65 99.6 3.8E-16 1.3E-20 107.4 7.8 68 76-150 3-81 (172)
200 2yh0_A Splicing factor U2AF 65 99.6 7.2E-16 2.4E-20 108.3 7.5 69 75-150 2-81 (198)
201 2adc_A Polypyrimidine tract-bi 99.6 2.1E-15 7.1E-20 108.9 9.3 72 74-150 148-221 (229)
202 3tht_A Alkylated DNA repair pr 99.6 1.1E-15 3.8E-20 116.4 8.1 66 73-144 14-81 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 7.1E-14 2.4E-18 88.8 9.9 57 87-150 27-83 (100)
204 3s6e_A RNA-binding protein 39; 99.5 6.9E-14 2.3E-18 90.9 9.2 72 75-150 5-86 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 6.1E-13 2.1E-17 86.9 7.2 71 73-149 14-88 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 4.3E-12 1.5E-16 78.3 6.6 68 74-150 4-79 (91)
207 3dxb_A Thioredoxin N-terminall 99.3 6.1E-12 2.1E-16 90.2 7.4 62 89-150 141-206 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 2.3E-11 7.9E-16 75.5 4.9 69 73-150 11-88 (95)
209 2l9w_A U4/U6 snRNA-associated- 99.0 3.8E-09 1.3E-13 66.9 8.2 71 74-150 18-93 (117)
210 1wey_A Calcipressin 1; structu 98.2 4.2E-06 1.4E-10 52.7 6.5 70 75-150 3-77 (104)
211 1wwh_A Nucleoporin 35, nucleop 98.0 2.9E-05 9.9E-10 50.1 6.8 67 74-148 21-87 (119)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00027 9.1E-09 43.5 9.2 68 78-145 2-71 (91)
213 2dhx_A Poly (ADP-ribose) polym 97.8 0.00016 5.6E-09 45.2 8.3 66 74-147 5-79 (104)
214 1whv_A Poly(A)-specific ribonu 97.7 0.00016 5.6E-09 44.8 7.0 55 76-139 15-69 (100)
215 3ctr_A Poly(A)-specific ribonu 97.5 0.0002 6.7E-09 44.6 5.1 53 79-140 8-60 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.9 0.00051 1.7E-08 54.2 3.2 57 75-137 51-107 (464)
217 2l08_A Regulator of nonsense t 96.7 0.0041 1.4E-07 38.5 5.5 71 75-145 7-79 (97)
218 3p3d_A Nucleoporin 53; structu 96.5 0.0018 6.3E-08 42.3 3.1 70 76-147 6-89 (132)
219 3d45_A Poly(A)-specific ribonu 93.6 0.28 9.7E-06 39.1 7.8 55 77-140 440-494 (507)
220 4f25_A Polyadenylate-binding p 83.1 0.32 1.1E-05 30.3 0.7 20 74-93 94-113 (115)
221 2i9x_A Putative septation prot 51.4 24 0.00083 21.0 3.9 26 103-128 5-30 (87)
222 3mfb_A Uncharacterized protein 48.4 34 0.0012 22.7 4.7 37 89-125 3-42 (157)
223 2ia9_A Putative septation prot 45.9 32 0.0011 21.0 3.9 26 103-128 5-30 (100)
224 2g0c_A ATP-dependent RNA helic 45.7 38 0.0013 18.9 5.4 63 79-150 2-70 (76)
225 2i9z_A Putative septation prot 45.3 34 0.0011 21.1 4.0 26 103-128 5-30 (105)
226 3fut_A Dimethyladenosine trans 45.0 20 0.00067 25.9 3.4 34 78-112 111-144 (271)
227 4e8u_A Putative uncharacterize 43.3 74 0.0025 21.5 7.4 56 79-137 14-81 (172)
228 1xn9_A 30S ribosomal protein S 41.2 60 0.002 19.8 5.7 48 87-135 28-80 (101)
229 3lpe_A Putative transcription 38.5 28 0.00095 20.7 2.9 36 103-143 39-74 (92)
230 3uzu_A Ribosomal RNA small sub 38.4 13 0.00045 26.9 1.6 35 78-112 115-149 (279)
231 3h7h_B Transcription elongatio 38.1 23 0.00079 21.8 2.5 35 103-142 40-74 (106)
232 3fry_A Probable copper-exporti 37.3 50 0.0017 17.8 5.2 56 77-139 6-61 (73)
233 3ts2_A Protein LIN-28 homolog 37.2 6.7 0.00023 25.8 -0.1 28 92-127 2-29 (148)
234 2v94_A RPS24, 30S ribosomal pr 35.6 78 0.0027 19.5 5.2 47 87-134 37-88 (107)
235 1qyr_A KSGA, high level kasuga 34.6 32 0.0011 24.3 3.2 33 78-110 91-123 (252)
236 3tqs_A Ribosomal RNA small sub 32.6 13 0.00043 26.6 0.7 33 80-112 99-131 (255)
237 4bby_A Alkyldihydroxyacetoneph 31.0 57 0.0019 26.7 4.4 56 83-139 349-408 (658)
238 1ywx_A 30S ribosomal protein S 30.1 96 0.0033 18.9 5.0 47 87-134 28-79 (102)
239 1i4w_A Mitochondrial replicati 29.3 27 0.00093 26.3 2.1 22 79-100 144-165 (353)
240 4a8j_B Elongator complex prote 29.0 1.4E+02 0.0048 21.6 5.6 48 78-125 167-222 (270)
241 3ftd_A Dimethyladenosine trans 28.9 30 0.001 24.4 2.2 33 78-110 96-128 (249)
242 2exu_A Transcription initiatio 26.8 42 0.0014 23.2 2.5 35 104-143 139-173 (200)
243 3cam_A Cold-shock domain famil 26.0 27 0.00091 19.4 1.2 10 119-128 13-22 (67)
244 2xzm_P RPS24E; ribosome, trans 25.7 1.4E+02 0.0047 19.6 4.7 47 87-134 31-82 (149)
245 2g1d_A 30S ribosomal protein S 25.0 31 0.0011 21.0 1.4 46 88-134 30-80 (98)
246 1wvf_A 4-cresol dehydrogenase 24.8 58 0.002 25.7 3.3 43 93-136 217-261 (520)
247 3a0j_A Cold shock protein; OB- 24.5 29 0.00099 19.6 1.2 10 119-128 13-22 (73)
248 1o57_A PUR operon repressor; p 24.5 2E+02 0.0069 20.8 6.2 41 94-139 47-87 (291)
249 3u5c_Y RP50, 40S ribosomal pro 24.2 1.5E+02 0.0051 19.1 6.2 47 87-134 33-84 (135)
250 4aj5_1 SKA3, spindle and kinet 23.8 27 0.00092 21.4 0.9 11 92-102 91-101 (101)
251 1g6p_A Cold shock protein TMCS 23.7 31 0.0011 19.0 1.2 10 119-128 12-21 (66)
252 1h95_A CSD, Y-box binding prot 23.5 31 0.0011 19.9 1.2 11 118-128 19-29 (79)
253 4eyt_A Telomerase associated p 23.5 1.3E+02 0.0043 18.1 8.0 57 75-139 10-66 (129)
254 3ulj_A LIN28B, DNA-binding pro 23.3 31 0.0011 20.6 1.2 9 118-126 19-27 (90)
255 3j21_T 50S ribosomal protein L 22.8 1.3E+02 0.0043 17.7 6.0 56 79-137 24-81 (86)
256 2k5n_A Putative cold-shock pro 22.6 40 0.0014 19.2 1.5 10 119-128 14-23 (74)
257 3swz_A Steroid 17-alpha-hydrox 22.5 69 0.0023 24.3 3.3 50 79-137 16-69 (494)
258 2kcm_A Cold shock domain famil 22.0 44 0.0015 19.0 1.6 10 119-128 12-21 (74)
259 1fme_A FSD-EY peptide; beta-BE 21.1 48 0.0016 14.6 1.2 12 90-101 14-25 (28)
260 1c9o_A CSPB, cold-shock protei 20.8 49 0.0017 18.2 1.6 10 119-128 13-22 (66)
261 3p8b_B Transcription antitermi 20.4 76 0.0026 20.4 2.7 35 104-143 33-67 (152)
262 3pm9_A Putative oxidoreductase 20.1 1.2E+02 0.004 23.7 4.2 54 85-139 194-251 (476)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=141.18 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
-.+++|||+|||+++|+++|+++|++||+|.++.+++|+.+|+++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=141.38 Aligned_cols=77 Identities=13% Similarity=0.252 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||.|.++.|+.|+.||+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=132.22 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=76.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC
Q 031884 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (151)
Q Consensus 70 ~~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~--------~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g 141 (151)
......+.++|||+|||.++++++|+++|++||.|.+ +.++.++.+|+++|||||+|.+.++|++|++.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3345678899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ceeCCEeCC
Q 031884 142 KVCCCFWMA 150 (151)
Q Consensus 142 ~~~~gr~ir 150 (151)
..++|+.|+
T Consensus 86 ~~~~g~~l~ 94 (99)
T 2la6_A 86 KEFSGNPIK 94 (99)
T ss_dssp CBSSSSBCE
T ss_pred CEeCCcEEE
Confidence 999999875
No 4
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-23 Score=129.89 Aligned_cols=77 Identities=18% Similarity=0.427 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 35788999999999999999999999999999999999998999999999999999999999999999999999986
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=127.49 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999885
No 6
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=4.4e-23 Score=127.49 Aligned_cols=77 Identities=26% Similarity=0.475 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 46789999999999999999999999999999999999988999999999999999999999999999999999985
No 7
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=7.3e-24 Score=132.71 Aligned_cols=73 Identities=16% Similarity=0.400 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G--~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.+|||+|||+++++++|+++|++|| .|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE
Confidence 5799999999999999999999999 999999999999999999999999999999999999999999999875
No 8
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=133.12 Aligned_cols=78 Identities=15% Similarity=0.274 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ--LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK----VCCC 146 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~--i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~----~~~g 146 (151)
....-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|++|++.|||. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456789999999999999999999999995 679999999999999999999999999999999999997 5899
Q ss_pred EeCC
Q 031884 147 FWMA 150 (151)
Q Consensus 147 r~ir 150 (151)
|+|+
T Consensus 85 r~i~ 88 (95)
T 2lkz_A 85 KTIG 88 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=8.8e-23 Score=128.64 Aligned_cols=78 Identities=31% Similarity=0.498 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..++|++|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999875
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=4.6e-24 Score=134.06 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-CCceeCCEeCC
Q 031884 77 KTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM-HGKVCCCFWMA 150 (151)
Q Consensus 77 ~~~l~V~nL~~~~te~~l~~~F~~~G-~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l-~g~~~~gr~ir 150 (151)
+++|||+|||+++||++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|++||+.+ ++..++|++|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 47899999999999999999999999 8999999999999999999999999999999999987 45679999875
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1e-22 Score=125.32 Aligned_cols=74 Identities=23% Similarity=0.496 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 77 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
+.+|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 36899999999999999999999999999999999998999999999999999999999999999999999985
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=127.59 Aligned_cols=78 Identities=21% Similarity=0.442 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999999999875
No 13
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=9.5e-23 Score=128.96 Aligned_cols=75 Identities=16% Similarity=0.482 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 468999999999999999999999999999999999998999999999999999999999999999999999875
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=9.4e-23 Score=130.88 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999875
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=129.72 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999999999885
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=128.37 Aligned_cols=77 Identities=30% Similarity=0.532 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..++++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 35778999999999999999999999999999999999998999999999999999999999999999999999875
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.89 E-value=2.5e-22 Score=131.45 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 456779999999999999999999999999999999999998999999999999999999999999999999999985
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=2e-22 Score=131.48 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||+++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++||..|||..+.|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456778999999999999999999999999999999999999999999999999999999999999999999999885
No 19
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.89 E-value=1.4e-23 Score=133.96 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC-E
Q 031884 75 QPKTRLFVSGLSF------RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCC-F 147 (151)
Q Consensus 75 ~~~~~l~V~nL~~------~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~g-r 147 (151)
..+++|||+|||+ ++++++|+++|++||.|.++.|+.++.||+++|||||+|.+.++|++||+.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468999999999 99999999999999999999999999999999999999999999999999999999999 8
Q ss_pred eCC
Q 031884 148 WMA 150 (151)
Q Consensus 148 ~ir 150 (151)
.|+
T Consensus 84 ~l~ 86 (100)
T 3ns6_A 84 RLF 86 (100)
T ss_dssp BCE
T ss_pred EEE
Confidence 874
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=2.4e-22 Score=131.00 Aligned_cols=79 Identities=20% Similarity=0.401 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||.++++++|+++|+.||.|.++.|+.++.+|+++|||||+|.+.++|++||+.|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456789999999999999999999999999999999999988999999999999999999999999999999999875
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=129.19 Aligned_cols=77 Identities=30% Similarity=0.577 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999874
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=128.42 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+. |||..+.|+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999998 999999999874
No 23
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=131.18 Aligned_cols=80 Identities=29% Similarity=0.537 Sum_probs=75.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 71 ~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....+.++|||+|||..+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34467789999999999999999999999999999999999998999999999999999999999999999999999875
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1e-22 Score=133.07 Aligned_cols=73 Identities=26% Similarity=0.509 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+|||+|||+++++++|+++|++||.|.+++|+.|+ +.++|||||+|.+.++|++||+.|||..++|+.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45789999999999999999999999999999999986 45899999999999999999999999999999874
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=127.66 Aligned_cols=77 Identities=27% Similarity=0.550 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 45678999999999999999999999999999999999998 999999999999999999999999999999999874
No 26
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-22 Score=130.72 Aligned_cols=78 Identities=22% Similarity=0.460 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 356678999999999999999999999999999999999999999999999999999999999999999999999874
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=130.22 Aligned_cols=78 Identities=29% Similarity=0.474 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999999999874
No 28
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=128.37 Aligned_cols=76 Identities=18% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV-EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~-~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
...+.++|||+|||+++++++|+++|++||.|. ++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 356789999999999999999999999999999 9999999999999999999999999999999999999999998
No 29
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=138.94 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G--~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+|||+++++++|+++|+.|| .|.++.|+.|+.+|+++|||||+|.+.++|++||..|||..++|++|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 3568999999999999999999999999 999999999999999999999999999999999999999999999985
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-22 Score=129.93 Aligned_cols=78 Identities=26% Similarity=0.466 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 356789999999999999999999999999999999999998999999999999999999999999999999999874
No 31
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=3.2e-22 Score=124.20 Aligned_cols=77 Identities=25% Similarity=0.484 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++ +++..+.|++|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999996 688899999874
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.8e-22 Score=128.96 Aligned_cols=79 Identities=22% Similarity=0.470 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec-CCCCCCceEEEEEeCCHHHHHHHHHHh-CCceeCCEeC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD-KIANRPRGFAFLRYATEEESRRAIEGM-HGKVCCCFWM 149 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~-~~~g~~kg~afV~f~~~~~a~~Al~~l-~g~~~~gr~i 149 (151)
....+.++|||+|||.++++++|+++|++||.|.++.|+.+ +.+|+++|||||+|.+.++|++|+..| ||..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34677899999999999999999999999999999999999 789999999999999999999999999 9999999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 90 ~ 90 (107)
T 2cph_A 90 V 90 (107)
T ss_dssp E
T ss_pred E
Confidence 4
No 33
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-22 Score=130.63 Aligned_cols=76 Identities=12% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++|+++|+++|++||.|.+|.|+.++. |+++|||||+|.+.++|++||. ++|..++|+.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 355678999999999999999999999999999999999986 9999999999999999999998 999999999874
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-22 Score=128.12 Aligned_cols=77 Identities=25% Similarity=0.497 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV-NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
+.+.++|||+|||.++++++|+++|++||.|.++ .|+.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3568899999999999999999999999999999 9999988999999999999999999999999999999999885
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.6e-22 Score=129.29 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC------CceeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH------GKVCCC 146 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~------g~~~~g 146 (151)
...+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|++||..|| |..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EeCC
Q 031884 147 FWMA 150 (151)
Q Consensus 147 r~ir 150 (151)
+.|+
T Consensus 91 ~~l~ 94 (111)
T 1x4h_A 91 RQLK 94 (111)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 9874
No 36
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=4.1e-22 Score=128.25 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45678999999999999999999999999999999999998 999999999999999999999999999999999985
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=2.5e-22 Score=129.96 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 356778999999999999999999999999999999999999999999999999999999999999999999999885
No 38
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=6.5e-22 Score=126.60 Aligned_cols=76 Identities=20% Similarity=0.398 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++|| |.++.|+.++.+|+++|||||+|.+.++|++|| .|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 456789999999999999999999999997 999999999999999999999999999999999 8999999999985
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.8e-22 Score=128.92 Aligned_cols=78 Identities=35% Similarity=0.605 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999999875
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.5e-22 Score=127.36 Aligned_cols=77 Identities=22% Similarity=0.457 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKI---ANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~---~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||.|.++.++.++. +|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35778999999999999999999999999999999999886 669999999999999999999999999999999874
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=1.4e-22 Score=130.31 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee---CCEeC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC---CCFWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~---~gr~i 149 (151)
...+.++|||+|||.++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++|+..|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456789999999999999999999999999999999999999999999999999999999999999999987 78876
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 89 ~ 89 (106)
T 2dgp_A 89 Q 89 (106)
T ss_dssp E
T ss_pred E
Confidence 4
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=6.1e-22 Score=127.04 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC---EeC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCC---FWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~g---r~i 149 (151)
...+.++|||+|||.++++++|+++|++||.|.++.|+.++ +|+++|||||+|.+.++|++|+..|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34678999999999999999999999999999999999998 89999999999999999999999999999988 776
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 90 ~ 90 (105)
T 2dnh_A 90 V 90 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=125.82 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 35677899999999999999999999999999999999998 499999999999999999999999999999999985
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.8e-22 Score=129.18 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--------EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC 144 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~--------~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~ 144 (151)
...+.++|||+|||.++++++|+++|++||.|. .+.|+.++.+|+++|||||+|.+.++|++||..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCEeCC
Q 031884 145 CCFWMA 150 (151)
Q Consensus 145 ~gr~ir 150 (151)
.|+.|+
T Consensus 91 ~g~~l~ 96 (113)
T 2cpe_A 91 QGSKLK 96 (113)
T ss_dssp TTEECE
T ss_pred CCCEEE
Confidence 999875
No 45
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.1e-22 Score=127.73 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345678999999999999999999999999999888999988999999999999999999999999999999999985
No 46
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=124.55 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCE-eC
Q 031884 77 KTRLFVSGLSFRT------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCF-WM 149 (151)
Q Consensus 77 ~~~l~V~nL~~~~------te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr-~i 149 (151)
+++|||+|||..+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|++|+..|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999887 45899999999999999999999999999999999 87
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 79 ~ 79 (81)
T 2krb_A 79 R 79 (81)
T ss_dssp C
T ss_pred E
Confidence 5
No 47
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=3.6e-22 Score=133.02 Aligned_cols=78 Identities=31% Similarity=0.498 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++||..|||..++|+.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999875
No 48
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-22 Score=130.63 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||.++++++|+++|+.||.|.++.|+.++.+|+++|||||+|.+.++|++|| .|||..+.|+.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII 97 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999 9999999999874
No 49
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=5.7e-22 Score=123.46 Aligned_cols=74 Identities=19% Similarity=0.514 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+ .|||..+.|+.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~ 78 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIK 78 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999 8999999999985
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=124.34 Aligned_cols=76 Identities=14% Similarity=0.418 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC-CceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR-PRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~-~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+|||.++++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 4568999999999999999999999999999999999987776 899999999999999999999999999999985
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=126.97 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce-eCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQG-FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV-CCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~-~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~-~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++ ||.|.++.|+.++ +|+++|||||+|.+.++|++|+..|||.. ++|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 467799999999999999999999999 9999999999998 99999999999999999999999999999 9999875
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6.9e-22 Score=126.43 Aligned_cols=77 Identities=26% Similarity=0.520 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||+++++++|+++|++||.|.++.++.+ +|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999999874
No 53
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=129.11 Aligned_cols=79 Identities=18% Similarity=0.343 Sum_probs=68.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecC-CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDK-IANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 70 ~~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~-~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
........++|||+|||.++++++|+++|+.|| |.++.++.++ .+|+++|||||+|.+.++|++|+ .|||..++|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334567789999999999999999999999999 9999999998 69999999999999999999999 89999999998
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
|+
T Consensus 90 l~ 91 (100)
T 2j76_E 90 IR 91 (100)
T ss_dssp CC
T ss_pred EE
Confidence 75
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=128.01 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||+++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++||..+++ .+.|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999998 89999874
No 55
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=1.5e-22 Score=127.63 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999985
No 56
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.9e-22 Score=126.42 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA-NRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~-g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|+.|| |.++.|+.++.+ |+++|||||+|.+.++|++|| .|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 345679999999999999999999999999 999999999987 999999999999999999999 9999999999875
No 57
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=4e-22 Score=134.00 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
......++|||+|||.++++++|+++|+.||.|.++.|+.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999874
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.5e-22 Score=126.43 Aligned_cols=77 Identities=23% Similarity=0.475 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++||.. ||..+.|+.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 467789999999999999999999999999999999999999999999999999999999999998 99999999875
No 59
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=134.40 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK----VCCC 146 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~--~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~----~~~g 146 (151)
.....++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3467789999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred EeCC
Q 031884 147 FWMA 150 (151)
Q Consensus 147 r~ir 150 (151)
++|+
T Consensus 98 r~l~ 101 (131)
T 2m2b_A 98 KTIN 101 (131)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 9875
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=129.77 Aligned_cols=76 Identities=29% Similarity=0.534 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999874
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=126.16 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.|+.++ +|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 35678999999999999999999999999999999999998 799999999999999999999999999999999874
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=131.13 Aligned_cols=79 Identities=25% Similarity=0.471 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999999999875
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.87 E-value=6e-22 Score=128.23 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=68.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 70 ~~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
......+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|++||..+ |..++|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 3345677899999999999999999999999999999999999999999999999999999999999876 589999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 97 ~ 97 (109)
T 2rs2_A 97 D 97 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.87 E-value=2.3e-21 Score=128.05 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 45678899999999999999999999999999999999998 999999999999999999999999999999999874
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=6.2e-22 Score=130.99 Aligned_cols=78 Identities=22% Similarity=0.460 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999999874
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=1.8e-21 Score=121.92 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++||.|.++.++.+ +|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 567899999999999999999999999999999999984 799999999999999999999999999999999875
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.87 E-value=2e-22 Score=121.80 Aligned_cols=71 Identities=30% Similarity=0.564 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 79 ~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
+|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++ +||..++|++|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 58999999999999999999999999999999999899999999999999999999997 999999999875
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.3e-21 Score=122.28 Aligned_cols=77 Identities=27% Similarity=0.556 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||.++++++|+++|++||.|.++.|+.++. .++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456789999999999999999999999999999999999863 3899999999999999999999999999999875
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=125.29 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC--CceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH--GKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~--g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||.|.++.|+.++ |||||+|.+.++|++|+..|+ +..+.|++|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k------GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT------TEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4678999999999999999999999999999999999764 999999999999999999886 4789999985
No 70
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=125.63 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~-~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|++||.|.+ +.|+.+ .+|+++|||||+|.+.++|++||.. |+..++||+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 3467789999999999999999999999999987 888888 6999999999999999999999997 99999999874
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=122.70 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.+|.|+.++. .++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 456789999999999999999999999999999999999863 3689999999999999999999999999999875
No 72
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.9e-22 Score=126.53 Aligned_cols=76 Identities=22% Similarity=0.535 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999999874
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=123.05 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~----~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
..+.++|||+|||+++++++|+ ++|++||.|.++.|+.++.+ +|||||+|.+.++|++|++.|||..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4567899999999999999999 99999999999999999855 7999999999999999999999999999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 83 ~ 83 (96)
T 2dgx_A 83 L 83 (96)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=127.76 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQL-VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i-~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|+.||.| .+|.|+.|+ +|+++|||||+|.+.++|++||.. ||..++|++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 35677899999999999999999999999999 899999998 999999999999999999999986 99999999874
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=4.1e-21 Score=131.54 Aligned_cols=77 Identities=22% Similarity=0.404 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||..|||..|.|+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999885
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.9e-21 Score=122.06 Aligned_cols=77 Identities=25% Similarity=0.505 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||+++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++||. ++..+.|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 345678899999999999999999999999999999999999899999999999999999999998 46788888764
No 77
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-22 Score=120.98 Aligned_cols=72 Identities=24% Similarity=0.512 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..++ ..++|+.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 479999999999999999999999999999999999899999999999999999999999999 999999874
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=120.15 Aligned_cols=75 Identities=15% Similarity=0.323 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|+.| .|.++.++.+ .+|+++|||||+|.+.++|++||. |||..++|++|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 35678999999999999999999999999 9999999999 699999999999999999999999 999999999874
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=125.08 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|++||.+ +|.|+.|+ +|+++|||||+|.+.++|++||+ +|+..++||.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 35667899999999999999999999999955 99999998 99999999999999999999994 899999999875
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.9e-21 Score=123.34 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
...+.++|||+|||+++++++|+++|++||.|.++.|+.++ +|+++|||||+|.+.++|++|+..|||..++|++
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 34567899999999999999999999999999999999998 9999999999999999999999999999996554
No 81
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=2.9e-21 Score=138.40 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||+|.+|.|++|+.+|+++|||||+|.+.++|++||+.+|+..+.|++|+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999885
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=2.1e-21 Score=133.01 Aligned_cols=78 Identities=31% Similarity=0.545 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|++||.|.++.|+.|+.+|+++|||||+|.+.++|++||..|||..+.|++|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999999874
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=125.76 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 031884 74 CQPKTRLFVSGLSFRT------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCF 147 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~------te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr 147 (151)
....++|||+|||+.+ ++++|+++|++||.|.++.|+ +.+|+++|||||+|.+.++|++|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4557899999999999 789999999999999999988 35899999999999999999999999999999998
Q ss_pred -eCC
Q 031884 148 -WMA 150 (151)
Q Consensus 148 -~ir 150 (151)
.|+
T Consensus 90 ~~l~ 93 (105)
T 2nlw_A 90 HTFR 93 (105)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 764
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=1.8e-21 Score=127.73 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~---i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
.....++|||+|||+++++++|+++|+.||. |.+|.|+.++. |+++|||||+|.+.++|++||+ +||..++||+|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999985 9999999999999999999999 99999999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 91 ~ 91 (118)
T 2db1_A 91 E 91 (118)
T ss_dssp E
T ss_pred E
Confidence 5
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.3e-21 Score=125.09 Aligned_cols=77 Identities=25% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHhccCCCeEEEEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLR---NAFQGFGQLVEVNLVMDKIAN---RPRGFAFLRYATEEESRRAIEGMHGKVCCCF 147 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~---~~F~~~G~i~~~~v~~~~~~g---~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr 147 (151)
....++|||+|||+++++++|+ ++|++||.|.++.|+.++.++ +++|||||+|.+.++|++||+.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999998755 5569999999999999999999999999999
Q ss_pred eCC
Q 031884 148 WMA 150 (151)
Q Consensus 148 ~ir 150 (151)
.|+
T Consensus 92 ~l~ 94 (111)
T 2cpi_A 92 TLK 94 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=2.9e-21 Score=127.40 Aligned_cols=74 Identities=19% Similarity=0.468 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+ .|||..++|+.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999 7999999999874
No 87
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=125.73 Aligned_cols=74 Identities=18% Similarity=0.367 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....+|||+|||+++++++|+++|+.| .|.+|.|+.|+ +|+++|||||+|.+.++|++|| .+||..++||.|+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3445799999999999999999999999 89999999998 5999999999999999999999 6999999999874
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2.7e-21 Score=119.50 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.-|||+||++.+||++|+++|.+||+|.++.+.. +||||||+|.++++|++|++.|||.++.||.|+
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 35678999999999999999999999999999999876 459999999999999999999999999999986
No 89
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.85 E-value=3.4e-22 Score=124.88 Aligned_cols=72 Identities=21% Similarity=0.497 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.+ |++|+..|||..++|+.|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEE
Confidence 58999999999999999999999999999999999999999999999999999 9999999999999999875
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=6e-21 Score=131.95 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++||..|||..|.|+.|+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 456678999999999999999999999999999999999999999999999999999999999999999999999874
No 91
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=120.77 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.|.. +++++|||||+|.+.++|++||+.|||..+.|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 456789999999999999999999999999999999855 456899999999999999999999999999999875
No 92
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.8e-21 Score=124.44 Aligned_cols=77 Identities=27% Similarity=0.562 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
......++|||+|||.++++++|+++|++||.|.++.++.++ +.++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345678999999999999999999999999999999999985 45899999999999999999999999999999985
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-21 Score=129.31 Aligned_cols=76 Identities=12% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||. |||..|+|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 4567899999999999999999999999999986677777799999999999999999999999 999999999874
No 94
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.85 E-value=1.1e-21 Score=131.79 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~---i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
.....++|||+|||+++|+++|+++|++||. |.+|.|+.|+. |+++|||||+|.+.++|++||+ +||..++||+|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999 99999999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 118 ~ 118 (136)
T 2hgl_A 118 E 118 (136)
T ss_dssp E
T ss_pred E
Confidence 5
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-21 Score=127.51 Aligned_cols=76 Identities=29% Similarity=0.517 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|+.||.|..+.|+.++.+|+++|||||+|.+.++|++||.. +|..+.|+.|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999997 99999999874
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=120.23 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=66.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh--CCceeCCEeC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM--HGKVCCCFWM 149 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l--~g~~~~gr~i 149 (151)
....++++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|.+.++|++|++.| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34567899999999999999999999999999999998876 499999999999999999976 5678999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 84 ~ 84 (101)
T 2cq1_A 84 Y 84 (101)
T ss_dssp E
T ss_pred E
Confidence 4
No 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=125.06 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEe-ecCCCCCCceEEEEEeCCHHHHHHHHHHhC--CceeCCEeC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLV-MDKIANRPRGFAFLRYATEEESRRAIEGMH--GKVCCCFWM 149 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~-i~~~~v~-~~~~~g~~kg~afV~f~~~~~a~~Al~~l~--g~~~~gr~i 149 (151)
..+.++|||+|||+++++++|+++|++||. |.++.++ .++.+|+++|||||+|.+.++|++|+..|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999998 888899999999999999999999999996 589999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 85 ~ 85 (109)
T 2dis_A 85 A 85 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.9e-21 Score=123.53 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc--eeCCEeCC
Q 031884 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--VCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~-~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~--~~~gr~ir 150 (151)
..++++|||+|||+ ++++++|+++|++||.|.++.|++++ |||||+|.+.++|++|++.||+. .+.||+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45789999999999 99999999999999999999998775 89999999999999999998864 59999985
No 99
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=126.20 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~---i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
.....++|||+|||+++++++|+++|+.||. |.++.|+.++. |+++|||||+|.+.++|++||. +||..++||.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4567899999999999999999999999998 89999999986 9999999999999999999999 99999999988
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 85 ~ 85 (107)
T 2lmi_A 85 E 85 (107)
T ss_dssp C
T ss_pred E
Confidence 5
No 100
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=2.3e-21 Score=140.74 Aligned_cols=76 Identities=16% Similarity=0.389 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G--~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+||++++++++|+++|++|| .|.+|.|+.|+.+|+++|||||+|.+.++|++||+.|||..|.|+.|+
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 3678999999999999999999999999 999999999999999999999999999999999999999999999875
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-21 Score=127.53 Aligned_cols=75 Identities=13% Similarity=0.305 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~----~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
...++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|..|+..|||..+.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34568899999999999999876 6999999999987743 7899999999999999999999999999999998
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
|+
T Consensus 102 l~ 103 (127)
T 2a3j_A 102 LV 103 (127)
T ss_dssp CE
T ss_pred EE
Confidence 75
No 102
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=121.38 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=65.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce--eCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV--CCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~--~~gr~ir 150 (151)
...++++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|+..|+|.. +.||+|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3568899999999999999999999999999999999864 4999999999999999999999885 7899874
No 103
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.9e-21 Score=127.00 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=67.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 031884 78 TRLFVSGL----SFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT----EEE----SRRAIE--GMHGKV 143 (151)
Q Consensus 78 ~~l~V~nL----~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~----~~~----a~~Al~--~l~g~~ 143 (151)
.+|||+|| |+.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 323 899988 789999
Q ss_pred eCCEeCC
Q 031884 144 CCCFWMA 150 (151)
Q Consensus 144 ~~gr~ir 150 (151)
|+||.||
T Consensus 83 I~Gr~ir 89 (136)
T 2j8a_A 83 IMGFKFE 89 (136)
T ss_dssp ETTEEEE
T ss_pred ecCcEEE
Confidence 9999986
No 104
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.84 E-value=1.3e-21 Score=118.15 Aligned_cols=71 Identities=32% Similarity=0.568 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 79 ~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
+|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+. +++..+.|+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 58999999999999999999999999999999999999999999999999999999998 599999999875
No 105
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=119.51 Aligned_cols=74 Identities=18% Similarity=0.348 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.| .++.+ .+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 45678999999999999999999999999987 56666 5899999999999999999999999999999999874
No 106
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=120.96 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=64.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc--eeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--VCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~--~~~gr~ir 150 (151)
...++++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|.+.++|++|++.|++. .+.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999998865 499999999999999999988765 48898874
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=114.47 Aligned_cols=72 Identities=26% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-CCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM-HGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l-~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|+..| +|..+.|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 4567889999999999999999999999999999999875 499999999999999999999 99999999985
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2e-21 Score=130.39 Aligned_cols=78 Identities=31% Similarity=0.545 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.|+.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999999874
No 109
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=118.14 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|+.|+ .+.++.++.+|+++|||||+|.+.++|++||..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 456789999999999999999999999874 677888888999999999999999999999999999999999875
No 110
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-22 Score=126.25 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.. .++.++.+|+++|||||+|.+.++|++||+ |||..+.|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 3556889999999999999999999999999988 677887799999999999999999999998 999999999875
No 111
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=3.1e-20 Score=129.84 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+.+++++|+++|++||.|.+|.|+.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 34567899999999999999999999999999999999998 999999999999999999999999999999999875
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=122.84 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--ceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g--~~~~gr~ir 150 (151)
..++++|||+|||+++++++|+++|++||.|.++.|+.++ |||||+|.+.++|++|++.+++ ..+.|++|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG------TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC------CEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4678899999999999999999999999999999999864 9999999999999999998874 579999875
No 113
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.9e-21 Score=125.46 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQL----VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i----~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.+..+|||+|||+++++++|+++|++||.| .+|.|+.++ +|+++|||||+|.+.++|++||+. |+..++||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 567899999999999999999999999986 689999995 999999999999999999999985 99999999874
No 114
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=4.6e-20 Score=126.32 Aligned_cols=75 Identities=25% Similarity=0.450 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999874
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=9.3e-21 Score=123.01 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G-~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|++|| .|..+.|.. ++++|||||+|.+.++|++||+.|||..++|+.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 45678999999999999999999999999 899998854 34789999999999999999999999999999875
No 116
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.83 E-value=1.7e-20 Score=124.27 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeE--EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~--~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|++| .|. +|.|+.|+. |+++|||||+|.+.++|++||+ +++..|+||+|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 677 999999985 9999999999999999999998 588999999885
No 117
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.83 E-value=5.9e-21 Score=121.86 Aligned_cols=74 Identities=19% Similarity=0.420 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|+.||.|.++.++.++ +|+++|||||+|.+.++|++|+. +|..+.|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 4567899999999999999999999999999999999998 99999999999999999999998 77777777664
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=5.4e-20 Score=116.63 Aligned_cols=73 Identities=22% Similarity=0.430 Sum_probs=65.2
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 70 SLSTCQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 70 ~~~~~~~~~~l~V~nL~~-~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
......+.++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..++|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344567889999999998 99999999999999999999883 599999999999999999999999999998
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
|+
T Consensus 87 l~ 88 (97)
T 2xnq_A 87 LI 88 (97)
T ss_dssp CE
T ss_pred EE
Confidence 75
No 119
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=121.98 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=64.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--ceeCCEeC
Q 031884 73 TCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KVCCCFWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~-~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g--~~~~gr~i 149 (151)
...++++|||+|||++ +++++|+++|++||.|.++.|++. ||||||+|.+.++|++|++.|++ ..+.||+|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 999999999999999999999754 59999999999999999998864 56899887
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 95 ~ 95 (112)
T 1x4f_A 95 K 95 (112)
T ss_dssp E
T ss_pred E
Confidence 4
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-21 Score=124.46 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345789999999999999999999999999994433333323889999999999999999999999999999999875
No 121
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=117.66 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=67.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 4567889999999999999999999999999999999865 49999999999999999999999999999874
No 122
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=118.05 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC-----Ee
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCC-----FW 148 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~g-----r~ 148 (151)
....++|||+|||+++++++|+++|++||.|.++.|+.+ |||||+|.+.++|++||+.|||..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456889999999999999999999999999999999876 899999999999999999999999999 77
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
|+
T Consensus 85 i~ 86 (108)
T 1x4c_A 85 IR 86 (108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=5.5e-20 Score=118.81 Aligned_cols=72 Identities=32% Similarity=0.530 Sum_probs=65.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 71 ~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....+.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456778999999999999999999999999999999987 49999999999999999999999999999875
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-19 Score=123.69 Aligned_cols=79 Identities=23% Similarity=0.481 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 3456788999999999999999999999999999999999998999999999999999999999999999999999985
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=114.40 Aligned_cols=70 Identities=17% Similarity=0.430 Sum_probs=65.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 35678999999999999999999999999999999987 48999999999999999999999999999875
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=5.8e-20 Score=119.63 Aligned_cols=74 Identities=14% Similarity=0.366 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..++++|||+|||.++++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 78 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV 78 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 456789999999999999999999999999999999865 55689999999999999999999999999999874
No 127
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.3e-20 Score=119.06 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~----~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
..++++|||+|||.++++++|+ ++|++||.|.++.+.. +|+++|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 5678999999999999999999 9999999999998873 67888999999999999999999999999999987
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 82 ~ 82 (97)
T 1nu4_A 82 R 82 (97)
T ss_dssp E
T ss_pred E
Confidence 5
No 128
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.5e-20 Score=115.26 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=66.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC--CEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC--CFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~--gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3566789999999999999999999999999999999765 499999999999999999999999999 88874
No 129
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.82 E-value=6e-21 Score=128.52 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|++|| |.+|.|+.|+. |+++|||||+|.+.++|++|| .+|+..++||+|+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 45678999999999999999999999999 67999999984 999999999999999999999 7999999999875
No 130
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=5.2e-20 Score=126.37 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|+|..+.|++|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence 578999999999999999999999999999999999998999999999999999999999999999999999874
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-22 Score=128.98 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC 145 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~--------~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~ 145 (151)
..+.++|||+|||.++++++|+++|++||.|.+ +.++.++.+|+++|||||+|.+.++|++|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CEeCC
Q 031884 146 CFWMA 150 (151)
Q Consensus 146 gr~ir 150 (151)
|+.|+
T Consensus 84 g~~l~ 88 (116)
T 2lcw_A 84 GNPIK 88 (116)
Confidence 99875
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.2e-20 Score=116.07 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34578999999999999999999999999999999973 459999999999999999999999999999985
No 133
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=115.83 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++++++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345678999999999999999999999999996 66665 36789999999999999999999999999999874
No 134
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=117.49 Aligned_cols=71 Identities=21% Similarity=0.513 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 456789999999999999999999999999999999887 49999999999999999999999999999875
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-20 Score=117.55 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=66.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45678999999999999999999999999988766 34789999999999999999999999999999999874
No 136
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.81 E-value=1.7e-19 Score=124.35 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999985
No 137
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.1e-19 Score=127.81 Aligned_cols=77 Identities=32% Similarity=0.537 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|++||.. ++..+.|+.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 456788999999999999999999999999999999999999999999999999999999999975 99999999874
No 138
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-20 Score=120.07 Aligned_cols=70 Identities=30% Similarity=0.552 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCCceEEEEEeCCHHHHHHHHHHh---CCcee
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA---NRPRGFAFLRYATEEESRRAIEGM---HGKVC 144 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~---g~~kg~afV~f~~~~~a~~Al~~l---~g~~~ 144 (151)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.| +|..+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 45678999999999999999999999999999 888888877 799999999999999999999988 66643
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=112.07 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|++|+. |||..++|+.|+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 4566899999999999999999999999999987 66666766 99999999999999999 999999999985
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-20 Score=120.07 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 4568999999999999999999999999999998875 449999999999999999999999999999874
No 141
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=111.94 Aligned_cols=70 Identities=26% Similarity=0.460 Sum_probs=64.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGF--GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~--G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++| |.|.++.+. +|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45678999999999999999999999999 999998764 48999999999999999999999999999874
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=3.1e-19 Score=115.37 Aligned_cols=69 Identities=22% Similarity=0.501 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~-~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||++ +++++|+++|++||.|.++.+ ++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445689999999999 999999999999999999988 359999999999999999999999999999985
No 143
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=1.9e-19 Score=141.55 Aligned_cols=77 Identities=27% Similarity=0.510 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999874
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.5e-19 Score=122.98 Aligned_cols=74 Identities=23% Similarity=0.526 Sum_probs=68.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
......++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|+..|||..+.|++|+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34567899999999999999999999999999999999886 469999999999999999999999999999875
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=111.48 Aligned_cols=70 Identities=24% Similarity=0.442 Sum_probs=65.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.+++ +||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 456789999999999999999999999999999999873 5999999999999999999999999999874
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=125.56 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE------EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV------NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCF 147 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~------~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr 147 (151)
..+.++|||+|||+++++++|+++|++||.|..+ .+.. ..+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 5678999999999999999999999999998764 1211 23799999999999999999999999999999999
Q ss_pred eCC
Q 031884 148 WMA 150 (151)
Q Consensus 148 ~ir 150 (151)
+|+
T Consensus 121 ~l~ 123 (143)
T 3egn_A 121 PMV 123 (143)
T ss_dssp ECE
T ss_pred EEE
Confidence 985
No 147
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-20 Score=117.10 Aligned_cols=68 Identities=28% Similarity=0.581 Sum_probs=64.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++|||+|||.++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 58999999999999999999999999999999887 679999999999999999999999999998874
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=3e-19 Score=127.27 Aligned_cols=76 Identities=20% Similarity=0.451 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 4558999999999999999999999999999999999998999999999999999999999999999999999884
No 149
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=3.1e-19 Score=114.12 Aligned_cols=69 Identities=28% Similarity=0.438 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 4567999999999999999999999999999999886 37999999999999999999999999999874
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.7e-19 Score=113.94 Aligned_cols=70 Identities=24% Similarity=0.502 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~-~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 356789999999998 99999999999999999999884 49999999999999999999999999998875
No 151
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=117.44 Aligned_cols=70 Identities=26% Similarity=0.357 Sum_probs=62.7
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 031884 74 CQPKTRLFV--SGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC-----CC 146 (151)
Q Consensus 74 ~~~~~~l~V--~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~-----~g 146 (151)
..+.++||| |||++++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 789999999999999999999999987643 59999999999999999999999998 56
Q ss_pred EeC
Q 031884 147 FWM 149 (151)
Q Consensus 147 r~i 149 (151)
++|
T Consensus 96 ~~l 98 (114)
T 2cq2_A 96 ITL 98 (114)
T ss_dssp EEC
T ss_pred cEE
Confidence 665
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=8.7e-20 Score=119.09 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
...++|||+|||+++++++|+++|++||.|.++.|+.+ |||||+|.+.++|++||+.|||..++|+.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 45789999999999999999999999999999999876 999999999999999999999999999874
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=110.93 Aligned_cols=70 Identities=23% Similarity=0.421 Sum_probs=65.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||+++++++|+++|++||.|.++.+++ +||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 356789999999999999999999999999999999873 5999999999999999999999999999875
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=113.24 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV-NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|++||.|.++ .++.++.+| .|||+|.+.++|++|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567899999999999999999999999999999 488877554 399999999999999999999999999875
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=8.2e-19 Score=123.44 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 46779999999999999999999999999999999999988999999999999999999999999999999999885
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-19 Score=122.07 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|+..|||..+.|++|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 589999999999999999999999999999999997 688999999999999999999999999999999874
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=2.3e-19 Score=111.59 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+|||+++++++|+++|++| .|.++.+. +++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 467899999999999999999999999 99999884 5679999999999999999999999999999875
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=3.2e-19 Score=127.12 Aligned_cols=76 Identities=25% Similarity=0.507 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 3467999999999999999999999999999999999998999999999999999999999999999999999874
No 159
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.79 E-value=3.1e-19 Score=110.47 Aligned_cols=70 Identities=23% Similarity=0.483 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~----G-------~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~ 142 (151)
..+.++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3467899999999999999999999999 8 9999999866 499999999999999999 99999
Q ss_pred eeCCEeCC
Q 031884 143 VCCCFWMA 150 (151)
Q Consensus 143 ~~~gr~ir 150 (151)
.+.|+.|+
T Consensus 76 ~~~g~~l~ 83 (87)
T 2hzc_A 76 IFQGQSLK 83 (87)
T ss_dssp EETTEECE
T ss_pred EECCeEEE
Confidence 99999985
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=5.3e-19 Score=121.33 Aligned_cols=73 Identities=23% Similarity=0.530 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+.. +..+.|+.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcc
Confidence 568999999999999999999999999999999999998999999999999999999999985 5667777664
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1.5e-18 Score=119.00 Aligned_cols=77 Identities=31% Similarity=0.557 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--EeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCC--FWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~g--r~ir 150 (151)
....++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+..|||..+.| ++|+
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999999999999988 7764
No 162
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=108.53 Aligned_cols=70 Identities=24% Similarity=0.465 Sum_probs=63.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|| ++++++|+++|++||.|.++.+. +++|||||+|.+.++|++||..|||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3457789999996 89999999999999999999884 4569999999999999999999999999999874
No 163
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=111.48 Aligned_cols=70 Identities=27% Similarity=0.365 Sum_probs=62.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC-ceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG-KVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~-i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g-~~~~gr~ir 150 (151)
..+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 467789999999999999999999999999 6665552 359999999999999999999999 999999875
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.2e-18 Score=119.13 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
....++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 3467899999999999999999999999999999999999899999999999999999999999999999999863
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=9.8e-19 Score=124.85 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLS-FRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~-~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.++++|||+||| +.+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++||+.|||..+.|+.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 467899999999 899999999999999999999998763 69999999999999999999999999999885
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.7e-18 Score=121.64 Aligned_cols=75 Identities=20% Similarity=0.419 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+.. +|..+.|+.|+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999985 89999999874
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.78 E-value=2.5e-18 Score=110.45 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 031884 74 CQPKTRLFVSGLSF-----RTSEDSLRNAFQGFGQLVEVNLVMDKIA-NRPRGFAFLRYATEEESRRAIEGMHGKVCCCF 147 (151)
Q Consensus 74 ~~~~~~l~V~nL~~-----~~te~~l~~~F~~~G~i~~~~v~~~~~~-g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr 147 (151)
..++++|+|.|+.. +-++++|++.|++||.|.++.|+.++.+ ++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45788999999973 2378999999999999999999998754 68999999999999999999999999999999
Q ss_pred eCC
Q 031884 148 WMA 150 (151)
Q Consensus 148 ~ir 150 (151)
.|+
T Consensus 85 ~i~ 87 (105)
T 2pe8_A 85 VVK 87 (105)
T ss_dssp ECE
T ss_pred EEE
Confidence 985
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.1e-18 Score=124.89 Aligned_cols=73 Identities=26% Similarity=0.501 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+|||+|||+++++++|+++|++||.|.++.|+.|. +.++|||||+|.+.++|++||+.|||..|+|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 45789999999999999999999999999999999985 45799999999999999999999999999999985
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=1e-18 Score=120.50 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCC--CCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN--RPRGFAFLRYATEEESRRAIEGMHGKVCC 145 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g--~~kg~afV~f~~~~~a~~Al~~l~g~~~~ 145 (151)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+| +++|||||+|.+.++|++|++.|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 57899999999999999999999999999999999999877 89999999999999999999999998875
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=108.72 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=59.5
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhccC-CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 75 QPKTR-LFVSGLSFRTSEDS----LRNAFQGF-GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 75 ~~~~~-l~V~nL~~~~te~~----l~~~F~~~-G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
+++.+ |||+|||+.+++++ |+++|++| |+|.+| +| |+|||+|.+.++|++|++.|||..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45555 99999999999988 55899999 599998 44 99999999999999999999999999999
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
|+
T Consensus 76 i~ 77 (96)
T 2diu_A 76 II 77 (96)
T ss_dssp CE
T ss_pred EE
Confidence 86
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.77 E-value=2.6e-18 Score=121.57 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..++|||+|||+++++++|+++|++||.|.+|.++++. +|+++|||||+|.+.++|++|+..++ ..++|++|+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~ 180 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLL 180 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEE
Confidence 45899999999999999999999999999999999987 69999999999999999999998654 589999874
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=4.1e-19 Score=121.88 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++ ++|..++|++|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 159 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIE 159 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEE
Confidence 46799999999999999999999999999999999998899999999999999999999998 899999999874
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=1.9e-18 Score=107.81 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=56.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee--CCEeC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC--CCFWM 149 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~--~gr~i 149 (151)
...+..+|||+|||+++++++|+++|++||.|.++.|+.+ ++|||||+|.+.++|++ ++|..+ .|+.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 3567899999999999999999999999999999999875 67999999999999983 556554 47665
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=7.9e-18 Score=111.05 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=59.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHhCCceeCC--EeC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF-AFLRYATEEESRRAIEGMHGKVCCC--FWM 149 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~-afV~f~~~~~a~~Al~~l~g~~~~g--r~i 149 (151)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|+.|++.|||..|.| ++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 35789999999999999999999999999998653 186 9999999999999999999999987 454
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=4e-18 Score=113.09 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHhCCceeCC--EeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF-AFLRYATEEESRRAIEGMHGKVCCC--FWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~-afV~f~~~~~a~~Al~~l~g~~~~g--r~ir 150 (151)
..-..|||+||++.+|+++|+++|++||.|.+|.+..+. +|| |||+|.+.++|++|++.|||..|.| ++||
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344678899999999999999999999999999887643 587 9999999999999999999999987 6664
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=2.5e-18 Score=118.51 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC---CEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC---CFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~---gr~ir 150 (151)
....++|||+|||+++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|.+|++.|||..+. |++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999997 7999999999999999999999999998876 37764
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=1.9e-18 Score=118.70 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--EeCC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCC--FWMA 150 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~g--r~ir 150 (151)
....+|||+||++.+++++|+++|++||.|.+|.|..++ ++|||||+|.+.++|++|++.|||..|.| +.|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 344679999999999999999999999999999986542 56999999999999999999999999965 7654
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=8.2e-18 Score=124.70 Aligned_cols=75 Identities=21% Similarity=0.397 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~----~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
...+.++|||+|||+++++++|+ ++|++||.|.+|.+++ +|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 35678999999999999999977 8999999999998875 7889999999999999999999999999999998
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
|+
T Consensus 82 l~ 83 (282)
T 3pgw_A 82 MR 83 (282)
T ss_pred EE
Confidence 74
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=2.2e-17 Score=122.53 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
....++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999874
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.1e-17 Score=110.10 Aligned_cols=69 Identities=25% Similarity=0.469 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+.++|||+|| ++++++|+++|++||.|.++.+. +++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999996 69999999999999999999886 4569999999999999999999999999999874
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.8e-17 Score=114.60 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=66.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||.++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 167 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 167 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34567899999999999999999999999988776 45899999999999999999999999999999999874
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-18 Score=105.87 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
.+.++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|+.. +..+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEE
Confidence 46799999999999999999999999999999999865 679999999999999865321 233467665
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=3.3e-17 Score=121.52 Aligned_cols=77 Identities=21% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRT-SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~-te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||.++ ++++|+++|+.||.|.++.|+.++ +|+++|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 34567899999999995 999999999999999999999987 899999999999999999999999999999999985
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=1.6e-17 Score=118.61 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCe--EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQL--VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i--~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
..++++|||+|||+++++++|+++|++||.| .+++++.++ |..+|||||+|.+.++|.+||..|||..+.|+..
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 3567899999999999999999999999999 899998875 5567999999999999999999999999998753
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=1.8e-17 Score=119.78 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~-~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..++++|||+|||+ ++++++|+++|++||.|.++.++.++ +|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 46789999999999 99999999999999999999999875 69999999999999999999999999999874
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=2.4e-17 Score=122.72 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCC-CCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKI-ANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~-~te~~l~~~F~~~G~i~~~~v~~~~~-~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||.+ +++++|+++|++||.|.++.++.+.. ||+++|||||+|.+.++|.+|+ .|||..++|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999875 5999999999999999999999 9999999999874
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=5.7e-17 Score=119.34 Aligned_cols=72 Identities=26% Similarity=0.447 Sum_probs=66.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.....++|||+|||+++|+++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|+..+||..+.|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 4567789999999999999999999999999999999655 49999999999999999999999999999875
No 188
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.70 E-value=1e-17 Score=107.45 Aligned_cols=68 Identities=15% Similarity=0.338 Sum_probs=61.6
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 82 VSGLSFRTSEDSLRNAF------------QGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 82 V~nL~~~~te~~l~~~F------------~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
+.||+..+++++|++.| ++||.|.++.|+.++ +|+++|||||+|.+.++|++|+..|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888887777 999999999999987 58999999999999999999999999999999998
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
+
T Consensus 99 ~ 99 (104)
T 1jmt_A 99 H 99 (104)
T ss_dssp C
T ss_pred E
Confidence 5
No 189
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.70 E-value=8.1e-17 Score=103.38 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHhccCCCeEEEEEeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCC
Q 031884 74 CQPKTRLFVSGL--SFRTS--------EDSLRNAFQGFGQLVEVNLVMDKIA--NRPRGFAFLRYATEEESRRAIEGMHG 141 (151)
Q Consensus 74 ~~~~~~l~V~nL--~~~~t--------e~~l~~~F~~~G~i~~~~v~~~~~~--g~~kg~afV~f~~~~~a~~Al~~l~g 141 (151)
..+++.|.+.|+ |..+. +++|++.|++||.|.++.|++++.+ ++++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 356788899997 33343 3689999999999999999998755 47899999999999999999999999
Q ss_pred ceeCCEeCC
Q 031884 142 KVCCCFWMA 150 (151)
Q Consensus 142 ~~~~gr~ir 150 (151)
..++||.|+
T Consensus 82 ~~f~GR~i~ 90 (105)
T 3v4m_A 82 RKFANRVVV 90 (105)
T ss_dssp CEETTEECE
T ss_pred CEeCCCEEE
Confidence 999999985
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=3.1e-17 Score=119.31 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=61.1
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 031884 74 CQPKTRLFVSGLSFRT---------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC 144 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~---------te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~ 144 (151)
....++||||||+..+ +|++|+++|++||+|.+|.|+.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5578999999999998 79999999999999999999865 49999999999999999999999999
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=4.4e-18 Score=117.72 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
...+.++|||+|||.++++++|+++|+.||.+.. .++.+..+|+++|||||+|.+.++|++|+ .|||..+.|++|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence 4577899999999999999999999999998776 34555568999999999999999999999 5999999999874
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=3.7e-17 Score=115.29 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 76 PKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 76 ~~~~l~V~nL~~-~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
.+++|||+|||+ ++++++|+++|++||.|.++.++.++ +|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 72 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 72 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEE
Confidence 468999999999 99999999999999999999998875 68999999999999999999999999999874
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-16 Score=100.86 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=64.0
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC
Q 031884 73 TCQPKTRLFVSGLSFRTS-----------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~t-----------e~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g 141 (151)
...++++|+|.||..... +++|+++|++||.|.++.| .++ .++|||||+|.+.++|++|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999954432 6899999999999999955 554 3789999999999999999999999
Q ss_pred ceeCCEeCC
Q 031884 142 KVCCCFWMA 150 (151)
Q Consensus 142 ~~~~gr~ir 150 (151)
..++||.|+
T Consensus 87 ~~~~gr~l~ 95 (112)
T 2dit_A 87 RWFGGRQIT 95 (112)
T ss_dssp CEETTEECE
T ss_pred CEECCcEEE
Confidence 999999985
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=2.1e-16 Score=117.10 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=67.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CEeCC
Q 031884 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC-CFWMA 150 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~-gr~ir 150 (151)
...+.++|||+|||.++++++|+++|++||.|.++.++.++ +|||||+|.+.++|.+|+..|||..+. |+.|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 34567899999999999999999999999999999998665 489999999999999999999999999 98875
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=2.1e-16 Score=117.67 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 72 ~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
......++|||+|||+++++++|+++|+.||.|.++.++.++. | ++|||||+|.+.++|++|++ +||..+.|++|+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 3467789999999999999999999999999999999999873 3 57999999999999999995 999999999875
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.66 E-value=3.1e-16 Score=102.61 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEeecCC----CCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 031884 75 QPKTRLFVSGLSF-----RTSEDSLRNAFQGFGQLVEVNLVMDKI----ANRPRGFAFLRYATEEESRRAIEGMHGKVCC 145 (151)
Q Consensus 75 ~~~~~l~V~nL~~-----~~te~~l~~~F~~~G~i~~~~v~~~~~----~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~ 145 (151)
.+++.|++.|+-. +--+++|++.|++||.|.+|.|+.++. +++++|++||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999842 123689999999999999999999864 4678899999999999999999999999999
Q ss_pred CEeCC
Q 031884 146 CFWMA 150 (151)
Q Consensus 146 gr~ir 150 (151)
||.|+
T Consensus 98 GR~i~ 102 (118)
T 3ue2_A 98 GRKVV 102 (118)
T ss_dssp TEECE
T ss_pred CcEEE
Confidence 99985
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=3e-16 Score=115.49 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=79.8
Q ss_pred ccCCCCCcccCCcCCCCCCCC----------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecC
Q 031884 50 RQGRGRGACFPLACLPPSPHS----------------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDK 113 (151)
Q Consensus 50 ~~~r~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~ 113 (151)
.-.++++++++.+.....+.. .....+..+|||+|||..+++++|+++|+.||.|.++.++.+.
T Consensus 53 ~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 53 FINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp EEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred EEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 345667888887765432111 1223457899999999999999999999999999999999995
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHh-CCceeC---CEeC
Q 031884 114 IANRPRGFAFLRYATEEESRRAIEGM-HGKVCC---CFWM 149 (151)
Q Consensus 114 ~~g~~kg~afV~f~~~~~a~~Al~~l-~g~~~~---gr~i 149 (151)
+|+++|||||+|.+.++|.+|+..| +|..+. |++|
T Consensus 133 -~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 133 -RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp -TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred -CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 9999999999999999999999999 454544 6665
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=109.42 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC-CFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G-~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~-gr~ir 150 (151)
..+.++|||+|||..+++++|+++|++|| .|.++.++.+. +|+|||+|.+.++|.+|+..|||..++ |++|+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 45689999999999999999999999999 99999997642 599999999999999999999999999 99875
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3.8e-16 Score=107.43 Aligned_cols=68 Identities=24% Similarity=0.509 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC 144 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~----G-------~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~ 144 (151)
+.++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+ .+||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 7 7788777544 599999999999999999 8999999
Q ss_pred CCEeCC
Q 031884 145 CCFWMA 150 (151)
Q Consensus 145 ~gr~ir 150 (151)
.|+.|+
T Consensus 76 ~g~~i~ 81 (172)
T 2g4b_A 76 QGQSLK 81 (172)
T ss_dssp TTEECE
T ss_pred cCceee
Confidence 999874
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=7.2e-16 Score=108.30 Aligned_cols=69 Identities=23% Similarity=0.502 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV 143 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~----G-------~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~ 143 (151)
...++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|||..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 5 6666655 445699999999999999999 899999
Q ss_pred eCCEeCC
Q 031884 144 CCCFWMA 150 (151)
Q Consensus 144 ~~gr~ir 150 (151)
+.|++|+
T Consensus 75 ~~g~~i~ 81 (198)
T 2yh0_A 75 FQGQSLK 81 (198)
T ss_dssp ETTEEEE
T ss_pred EcCceEE
Confidence 9999874
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=2.1e-15 Score=108.93 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CEeCC
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC-CFWMA 150 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G-~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~-gr~ir 150 (151)
..+.++|||+|||.++++++|+++|++|| .|.++.++.+ .+|||||+|.+.++|.+|+..|||..+. |++|+
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 221 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence 45679999999999999999999999999 9999999653 2599999999999999999999999999 99875
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=1.1e-15 Score=116.41 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=59.8
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 031884 73 TCQPKTRLFVSG--LSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC 144 (151)
Q Consensus 73 ~~~~~~~l~V~n--L~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~ 144 (151)
...++.+||||| |+..++|++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||+.+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 367889999999 578999999999999999999987643 469999999999999999999999988
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.1e-14 Score=88.78 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 87 FRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 87 ~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|+.|++.+++ +.|++|+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 468999999999999999999987 46789999999999999999998655 4566653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=6.9e-14 Score=90.88 Aligned_cols=72 Identities=10% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 031884 75 QPKTRLFVSGLSFRTS----------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVC 144 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~t----------e~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~ 144 (151)
.+++.|.+.|+=..-. +++|++.|++||.|.++.|.++. ++||+||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4566788877643222 35789999999999999886653 589999999999999999999999999
Q ss_pred CCEeCC
Q 031884 145 CCFWMA 150 (151)
Q Consensus 145 ~gr~ir 150 (151)
+||.|+
T Consensus 81 ~GR~i~ 86 (114)
T 3s6e_A 81 AGKMIT 86 (114)
T ss_dssp TTEECE
T ss_pred CCEEEE
Confidence 999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.1e-13 Score=86.89 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCC-HHHHHHHHHHhC--CceeCCEe
Q 031884 73 TCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT-EEESRRAIEGMH--GKVCCCFW 148 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~-~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~-~~~a~~Al~~l~--g~~~~gr~ 148 (151)
.-..++.|||+||+++ +++++|+++|++||+|..|.++.+. -.|||.|.+ .++|..|+..+| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4578899999999999 9999999999999999999999887 469999999 899999999994 66666654
Q ss_pred C
Q 031884 149 M 149 (151)
Q Consensus 149 i 149 (151)
+
T Consensus 88 ~ 88 (121)
T 1owx_A 88 V 88 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=78.33 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCC----CCCH----HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 031884 74 CQPKTRLFVSGLSF----RTSE----DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCC 145 (151)
Q Consensus 74 ~~~~~~l~V~nL~~----~~te----~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~ 145 (151)
.++..||+|.-++. +.-. .+|.+.|++||.|..++++.|+ +||+|.+.++|.+||. |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 56778898977662 3333 5789999999999999999875 8999999999999998 9999999
Q ss_pred CEeCC
Q 031884 146 CFWMA 150 (151)
Q Consensus 146 gr~ir 150 (151)
||.||
T Consensus 75 Gr~Lk 79 (91)
T 2dnr_A 75 NRTIT 79 (91)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 99985
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.29 E-value=6.1e-12 Score=90.25 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=55.8
Q ss_pred CCHHHHHHHhccCCCeEEEEEeecC----CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 89 TSEDSLRNAFQGFGQLVEVNLVMDK----IANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 89 ~te~~l~~~F~~~G~i~~~~v~~~~----~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
-.+++|++.|++||.|.++.|..+. .+|+++|++||+|.+.++|.+|++.|||+.+.||.|+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~ 206 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 206 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEE
Confidence 4567899999999999999998554 4558999999999999999999999999999999985
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.3e-11 Score=75.47 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCCCCCeEEEcCCCCC------CCH---HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 031884 73 TCQPKTRLFVSGLSFR------TSE---DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV 143 (151)
Q Consensus 73 ~~~~~~~l~V~nL~~~------~te---~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~ 143 (151)
-.++..||+|.-++.+ ..+ .+|.+.|..||+|..+++..|+ +||+|.+.++|.+||. |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3678889999888743 232 4689999999999999999885 9999999999999998 99999
Q ss_pred eCCEeCC
Q 031884 144 CCCFWMA 150 (151)
Q Consensus 144 ~~gr~ir 150 (151)
++||.|+
T Consensus 82 v~Gr~L~ 88 (95)
T 1ufw_A 82 VKGRAVK 88 (95)
T ss_dssp ETTEEEE
T ss_pred eCCeEEE
Confidence 9999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.8e-09 Score=66.93 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC-----CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGF-----GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~-----G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
....++|-+-|||..+++..++.+.+++ |.|..+.+..|. |-|+|+|.+...|-+|.-.|+|.++.||.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4567889999999999999999999999 999999999987 77999999999999999999999999999
Q ss_pred CC
Q 031884 149 MA 150 (151)
Q Consensus 149 ir 150 (151)
||
T Consensus 92 Lr 93 (117)
T 2l9w_A 92 IR 93 (117)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=4.2e-06 Score=52.66 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=59.0
Q ss_pred CCCCeEEEcCCCCCC-CH----HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeC
Q 031884 75 QPKTRLFVSGLSFRT-SE----DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWM 149 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~-te----~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~i 149 (151)
.-.++|+|.||+.++ .. +.++++|..|+++......+.- .-.-|.|.+.++|.+|-..||+..+.|+.|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998864 32 4678999999999887777654 567899999999999999999999999988
Q ss_pred C
Q 031884 150 A 150 (151)
Q Consensus 150 r 150 (151)
|
T Consensus 77 r 77 (104)
T 1wey_A 77 K 77 (104)
T ss_dssp E
T ss_pred E
Confidence 6
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=2.9e-05 Score=50.07 Aligned_cols=67 Identities=15% Similarity=0.273 Sum_probs=54.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEe
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFW 148 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ 148 (151)
....+-|.|-+.|+.. ...+-..|++||.|.+..... ...+-.|.|.++.+|++||. .||..+.|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 4557788899999986 466778899999999886621 23799999999999999997 7999987644
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=0.00027 Score=43.51 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=56.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--CceEEEEEeCCHHHHHHHHHHhCCceeC
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR--PRGFAFLRYATEEESRRAIEGMHGKVCC 145 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~--~kg~afV~f~~~~~a~~Al~~l~g~~~~ 145 (151)
++|.|.+||+.+||+++.+.++....+.-...+..+.+.+ .-.-|||.|.+.+++..-...++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999998876666555443332 2367999999999999999999998764
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00016 Score=45.23 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-----CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH----hCCcee
Q 031884 74 CQPKTRLFVSGLSFRTSEDSLRNAFQG-----FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG----MHGKVC 144 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~l~~~F~~-----~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~----l~g~~~ 144 (151)
..-..+|.|.|||..+.++.|+-+|+. =|+|.+++... +-|+|+|.+.+.|++.|+. |++..+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345789999999999999999999987 26788876643 5689999999999999976 566655
Q ss_pred CCE
Q 031884 145 CCF 147 (151)
Q Consensus 145 ~gr 147 (151)
.-+
T Consensus 77 sV~ 79 (104)
T 2dhx_A 77 SLR 79 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.72 E-value=0.00016 Score=44.78 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=45.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l 139 (151)
..+.+++ +.|.+....||.++|+.||. ..|+.+.| -.|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 3445555 99999999999999999994 45566666 47999999999999999866
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.50 E-value=0.0002 Score=44.55 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=45.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 031884 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (151)
Q Consensus 79 ~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~ 140 (151)
.+++ +.|.+....||.++|+.|| -..|+.+.| -.|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4455 9999999999999999999 556667776 579999999999999998764
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.92 E-value=0.00051 Score=54.16 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=42.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~ 137 (151)
+..+.|+|. .|..+++++|.++|++||.|.++.+..+. | -||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 445799997 79999999999999999999998666543 2 799999999999987754
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.72 E-value=0.0041 Score=38.54 Aligned_cols=71 Identities=6% Similarity=0.103 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CC-CceEEEEEeCCHHHHHHHHHHhCCceeC
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA-NR-PRGFAFLRYATEEESRRAIEGMHGKVCC 145 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~-g~-~kg~afV~f~~~~~a~~Al~~l~g~~~~ 145 (151)
..+-+|.|..||+.+||+++.+.++..=.+.-...+..+.+ +. .-.-|||.|.+.++...-.+.++|..+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 34678999999999999998888877544322211111111 11 1256899999999999999999998874
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.52 E-value=0.0018 Score=42.26 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=48.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeec------------CCCC-CCceEEEEEeCCHHHHHHHHHHhCC
Q 031884 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMD------------KIAN-RPRGFAFLRYATEEESRRAIEGMHG 141 (151)
Q Consensus 76 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~-~~v~~~------------~~~g-~~kg~afV~f~~~~~a~~Al~~l~g 141 (151)
...-|.|-+.|++.+ ..+-+.|++||.|.+ ..+..+ +.-+ ....+-.|+|+++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 345677888877765 456778999999876 211110 0000 124688999999999999996 899
Q ss_pred ceeCCE
Q 031884 142 KVCCCF 147 (151)
Q Consensus 142 ~~~~gr 147 (151)
..+.|.
T Consensus 84 ~ii~G~ 89 (132)
T 3p3d_A 84 AVFNGV 89 (132)
T ss_dssp CEETTE
T ss_pred eEeCcE
Confidence 888875
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.61 E-value=0.28 Score=39.06 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 031884 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (151)
Q Consensus 77 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~ 140 (151)
...++|+ +|..+...+|.+.|+.||. .+|..+.+ ..|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 8889999999999999995 45555544 579999999999999999884
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=83.10 E-value=0.32 Score=30.35 Aligned_cols=20 Identities=5% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCCCCCHHH
Q 031884 74 CQPKTRLFVSGLSFRTSEDS 93 (151)
Q Consensus 74 ~~~~~~l~V~nL~~~~te~~ 93 (151)
....++|||+|||+++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34456899999999999863
No 221
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=51.42 E-value=24 Score=20.98 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=20.9
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 031884 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (151)
Q Consensus 103 ~i~~~~v~~~~~~g~~kg~afV~f~~ 128 (151)
+|.++++..-...|+-++||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788777766678889999999975
No 222
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=48.43 E-value=34 Score=22.74 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=29.2
Q ss_pred CCHHHHHHHhccCCCeE---EEEEeecCCCCCCceEEEEE
Q 031884 89 TSEDSLRNAFQGFGQLV---EVNLVMDKIANRPRGFAFLR 125 (151)
Q Consensus 89 ~te~~l~~~F~~~G~i~---~~~v~~~~~~g~~kg~afV~ 125 (151)
.++++|+++-...|++. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999873 55666664489988888764
No 223
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=45.90 E-value=32 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=20.7
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 031884 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (151)
Q Consensus 103 ~i~~~~v~~~~~~g~~kg~afV~f~~ 128 (151)
+|.+++|..-...|+-++||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788777766678889999999975
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.72 E-value=38 Score=18.87 Aligned_cols=63 Identities=5% Similarity=0.106 Sum_probs=37.3
Q ss_pred eEEEcC-CCCCCCHHHHHHHhccCCC-----eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCEeCC
Q 031884 79 RLFVSG-LSFRTSEDSLRNAFQGFGQ-----LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKVCCCFWMA 150 (151)
Q Consensus 79 ~l~V~n-L~~~~te~~l~~~F~~~G~-----i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~~~gr~ir 150 (151)
++|+.. =-..+...+|..++..-+. |-.+.+.- .|.||+-... .+..+++.|++..++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~ 70 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLK 70 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEE
Confidence 456632 2234666777777765433 55666632 5789988654 57788889999999998764
No 225
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=45.30 E-value=34 Score=21.15 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=20.2
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 031884 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (151)
Q Consensus 103 ~i~~~~v~~~~~~g~~kg~afV~f~~ 128 (151)
+|.+++|..-...|+-++||=|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777776666678889999999875
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=45.01 E-value=20 Score=25.88 Aligned_cols=34 Identities=12% Similarity=0.363 Sum_probs=27.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD 112 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~ 112 (151)
.-+.|+|||+.++..-|..+++. +.+....++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999987 77776655543
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.31 E-value=74 Score=21.45 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=37.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--ccCCCeEEEEEeecCCCCCCceEEEEEeCC-HHHHHHHHH
Q 031884 79 RLFVSGLSFR---------TSEDSLRNAF--QGFGQLVEVNLVMDKIANRPRGFAFLRYAT-EEESRRAIE 137 (151)
Q Consensus 79 ~l~V~nL~~~---------~te~~l~~~F--~~~G~i~~~~v~~~~~~g~~kg~afV~f~~-~~~a~~Al~ 137 (151)
.+.|-|+|.. .+..+|++.| ..|.++. +..+.++ .| +.|++.|.|.+ ......|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecCChHHHHHHHH
Confidence 4456677751 4457899977 9998866 5555654 33 56999999985 455555553
No 228
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=41.21 E-value=60 Score=19.81 Aligned_cols=48 Identities=17% Similarity=0.368 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhcc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHHH
Q 031884 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESRRA 135 (151)
Q Consensus 87 ~~~te~~l~~~F~~-~G~---i~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~A 135 (151)
..++..+|++-..+ |+. +.-| .+...-..|++.|||.| |++.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777766654 443 2222 33333345677788854 7787777654
No 229
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.48 E-value=28 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=27.5
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 031884 103 QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV 143 (151)
Q Consensus 103 ~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~ 143 (151)
.|.++.+... ..||-||+++..++...+++...|..
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCce
Confidence 3666655432 56999999999999999998877753
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=38.44 E-value=13 Score=26.90 Aligned_cols=35 Identities=9% Similarity=0.168 Sum_probs=27.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD 112 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~ 112 (151)
....|+|||+.++..-|..+++....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986666666655554
No 231
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=38.08 E-value=23 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=26.7
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc
Q 031884 103 QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (151)
Q Consensus 103 ~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~ 142 (151)
.|.++-. .+ ..+||-||+=.+..++..|+..+.+.
T Consensus 40 ~I~Si~~-~~----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVA-PE----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEE-CT----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEe-cC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 4777644 32 25799999999999999999876544
No 232
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.29 E-value=50 Score=17.77 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031884 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (151)
Q Consensus 77 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l 139 (151)
..++.|.++.=.--...++..+.. -.|..+.+-... +-+.|.|.+.+....+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHHc
Confidence 356788888887778889999988 788888776554 77888888666777777643
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=37.23 E-value=6.7 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=16.0
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeC
Q 031884 92 DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA 127 (151)
Q Consensus 92 ~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~ 127 (151)
+|+.++|...|.|+.... .||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 455566777777665321 2499999975
No 234
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.57 E-value=78 Score=19.51 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhcc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 031884 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESRR 134 (151)
Q Consensus 87 ~~~te~~l~~~F~~-~G~---i~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~ 134 (151)
..++..++++-... |+. +.-| .+...-..|++.|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677777766654 443 2222 33333345677888855 778777764
No 235
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=34.59 E-value=32 Score=24.34 Aligned_cols=33 Identities=9% Similarity=0.181 Sum_probs=23.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLV 110 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~ 110 (151)
.-+.|+|||+.++...+..+++....+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 357899999999999888887754345444333
No 236
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.59 E-value=13 Score=26.59 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec
Q 031884 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD 112 (151)
Q Consensus 80 l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~ 112 (151)
..|+|||+.++..-|..+++..+.+....++..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 479999999999999999987666766655544
No 237
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.04 E-value=57 Score=26.66 Aligned_cols=56 Identities=5% Similarity=0.134 Sum_probs=41.2
Q ss_pred cCCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031884 83 SGLSFRTSEDSLRNAFQ----GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (151)
Q Consensus 83 ~nL~~~~te~~l~~~F~----~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l 139 (151)
+..+.+.+-.||..+|- .+|-|.++.+-.-+ -...+.++++.|.+.++|..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 34566666678888883 47889888776554 3445678899999999999988765
No 238
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=30.13 E-value=96 Score=18.91 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhcc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 031884 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESRR 134 (151)
Q Consensus 87 ~~~te~~l~~~F~~-~G~---i~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~ 134 (151)
..++..+|++-..+ |+. +.-| .+...-..|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45777777766654 432 2222 33444445677788855 777777654
No 239
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=29.27 E-value=27 Score=26.30 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=18.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc
Q 031884 79 RLFVSGLSFRTSEDSLRNAFQG 100 (151)
Q Consensus 79 ~l~V~nL~~~~te~~l~~~F~~ 100 (151)
...|+|||++++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988887764
No 240
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=28.98 E-value=1.4e+02 Score=21.61 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=38.1
Q ss_pred CeEEEcCCCC-CCCHHHHHHHhccC-------CCeEEEEEeecCCCCCCceEEEEE
Q 031884 78 TRLFVSGLSF-RTSEDSLRNAFQGF-------GQLVEVNLVMDKIANRPRGFAFLR 125 (151)
Q Consensus 78 ~~l~V~nL~~-~~te~~l~~~F~~~-------G~i~~~~v~~~~~~g~~kg~afV~ 125 (151)
+.+=|..+.. .++|++|...+++| ..+-.+.+...+.+|++--|.|..
T Consensus 167 TIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 167 TIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred heEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 3444666666 68999999999987 457788899999999998888874
No 241
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.86 E-value=30 Score=24.39 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=24.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe
Q 031884 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLV 110 (151)
Q Consensus 78 ~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~ 110 (151)
.-+.|+|+|+.++..-|..+++....+....++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 347899999999999998888765444444333
No 242
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.76 E-value=42 Score=23.20 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=27.3
Q ss_pred eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 031884 104 LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV 143 (151)
Q Consensus 104 i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~ 143 (151)
|.++ +..+ .-|||-||+=.+..++..||+.+.+..
T Consensus 139 I~Si-~~~d----~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSI-FQRD----NYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEE-ECCT----TSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEE-EecC----CCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 6666 3333 257999999999999999999887753
No 243
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=25.99 E-value=27 Score=19.45 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=8.2
Q ss_pred ceEEEEEeCC
Q 031884 119 RGFAFLRYAT 128 (151)
Q Consensus 119 kg~afV~f~~ 128 (151)
||||||+=++
T Consensus 13 kGfGFI~~~~ 22 (67)
T 3cam_A 13 KGFGFITPDE 22 (67)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEecCC
Confidence 5999999765
No 244
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=25.68 E-value=1.4e+02 Score=19.62 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhcc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 031884 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESRR 134 (151)
Q Consensus 87 ~~~te~~l~~~F~~-~G~---i~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~ 134 (151)
..++..+|++-... |+. ..-| .+...-..|++.|||.| |++.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35677788777665 543 2222 23333334567788866 777777654
No 245
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=25.02 E-value=31 Score=20.97 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhcc-CCCeEEEEEeec----CCCCCCceEEEEEeCCHHHHHH
Q 031884 88 RTSEDSLRNAFQG-FGQLVEVNLVMD----KIANRPRGFAFLRYATEEESRR 134 (151)
Q Consensus 88 ~~te~~l~~~F~~-~G~i~~~~v~~~----~~~g~~kg~afV~f~~~~~a~~ 134 (151)
.++..++++-... |+.-.++-++.. -..|++.|||.| |++.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566676655544 333222222222 224466778855 666666554
No 246
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=24.78 E-value=58 Score=25.65 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=29.6
Q ss_pred HHHHHh--ccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHH
Q 031884 93 SLRNAF--QGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136 (151)
Q Consensus 93 ~l~~~F--~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al 136 (151)
+|..+| +.+|-|.++.+-..+ .......+++.|.+.++|..++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p-~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEE-CCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEe-cCCeEEEEEEEeCCHHHHHHHH
Confidence 456777 358999998776655 3344567789999877766543
No 247
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=24.52 E-value=29 Score=19.63 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=8.2
Q ss_pred ceEEEEEeCC
Q 031884 119 RGFAFLRYAT 128 (151)
Q Consensus 119 kg~afV~f~~ 128 (151)
||||||+-++
T Consensus 13 kGfGFI~~~~ 22 (73)
T 3a0j_A 13 KGYGFIEREG 22 (73)
T ss_dssp TTEEEEECTT
T ss_pred CCEEEEecCC
Confidence 5999998764
No 248
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=24.49 E-value=2e+02 Score=20.75 Aligned_cols=41 Identities=10% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031884 94 LRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (151)
Q Consensus 94 l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l 139 (151)
+++.|+.+|--.-..+ .|...|+-|+-|-+.+.|+..++.+
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 4578888765422222 6788899999999999999888755
No 249
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.19 E-value=1.5e+02 Score=19.10 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhcc-CCCe---EEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 031884 87 FRTSEDSLRNAFQG-FGQL---VEV-NLVMDKIANRPRGFAFLRYATEEESRR 134 (151)
Q Consensus 87 ~~~te~~l~~~F~~-~G~i---~~~-~v~~~~~~g~~kg~afV~f~~~~~a~~ 134 (151)
..++..+|++-+.. |+.- ..| .+...-..|++.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35778888888865 6642 222 23333345567788865 777777654
No 250
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.82 E-value=27 Score=21.35 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=7.7
Q ss_pred HHHHHHhccCC
Q 031884 92 DSLRNAFQGFG 102 (151)
Q Consensus 92 ~~l~~~F~~~G 102 (151)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 46788888887
No 251
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=23.74 E-value=31 Score=19.05 Aligned_cols=10 Identities=20% Similarity=0.733 Sum_probs=8.2
Q ss_pred ceEEEEEeCC
Q 031884 119 RGFAFLRYAT 128 (151)
Q Consensus 119 kg~afV~f~~ 128 (151)
||||||+-++
T Consensus 12 kGfGFI~~~~ 21 (66)
T 1g6p_A 12 KGYGFITKDE 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 5999999764
No 252
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.55 E-value=31 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=8.4
Q ss_pred CceEEEEEeCC
Q 031884 118 PRGFAFLRYAT 128 (151)
Q Consensus 118 ~kg~afV~f~~ 128 (151)
.||||||+-++
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 35999998754
No 253
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.45 E-value=1.3e+02 Score=18.06 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=44.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031884 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (151)
Q Consensus 75 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l 139 (151)
...+-+-|-|+|..+-..++.-...-.|----+..+- |-|.|.|.+.+....|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3567778889999998888777777777655554432 77999999999999999876
No 254
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=23.31 E-value=31 Score=20.55 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=7.0
Q ss_pred CceEEEEEe
Q 031884 118 PRGFAFLRY 126 (151)
Q Consensus 118 ~kg~afV~f 126 (151)
.|||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 369999974
No 255
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.78 E-value=1.3e+02 Score=17.74 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 031884 79 RLFVSGLSFRTSEDSLRNAFQG-FG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (151)
Q Consensus 79 ~l~V~nL~~~~te~~l~~~F~~-~G-~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~ 137 (151)
+-|+--++...+..++++.++. || .|.++..+.-+ .| .--|||++....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHH
Confidence 4566678899999999999988 66 57788776654 22 2459999988777665443
No 256
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=22.64 E-value=40 Score=19.16 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=8.2
Q ss_pred ceEEEEEeCC
Q 031884 119 RGFAFLRYAT 128 (151)
Q Consensus 119 kg~afV~f~~ 128 (151)
||||||+-++
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 5999998764
No 257
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=22.54 E-value=69 Score=24.33 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=36.1
Q ss_pred eEEEcCCCCCCC----HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 031884 79 RLFVSGLSFRTS----EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (151)
Q Consensus 79 ~l~V~nL~~~~t----e~~l~~~F~~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~ 137 (151)
--+|||+..-.. ...+.+...+||.|..+.+. +.-+|...+.+.++..+.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHH
Confidence 346898875421 35677788889999888762 345677889999998885
No 258
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=21.96 E-value=44 Score=19.03 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=8.2
Q ss_pred ceEEEEEeCC
Q 031884 119 RGFAFLRYAT 128 (151)
Q Consensus 119 kg~afV~f~~ 128 (151)
||||||+-++
T Consensus 12 KGfGFI~~~d 21 (74)
T 2kcm_A 12 KKYGFIQGDD 21 (74)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 5999998765
No 259
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.07 E-value=48 Score=14.63 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=9.7
Q ss_pred CHHHHHHHhccC
Q 031884 90 SEDSLRNAFQGF 101 (151)
Q Consensus 90 te~~l~~~F~~~ 101 (151)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 678888888876
No 260
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=20.77 E-value=49 Score=18.18 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=8.1
Q ss_pred ceEEEEEeCC
Q 031884 119 RGFAFLRYAT 128 (151)
Q Consensus 119 kg~afV~f~~ 128 (151)
||||||+-++
T Consensus 13 kGfGFI~~~~ 22 (66)
T 1c9o_A 13 KGYGFIEVEG 22 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEecCC
Confidence 5999998764
No 261
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.35 E-value=76 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=26.3
Q ss_pred eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 031884 104 LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKV 143 (151)
Q Consensus 104 i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l~g~~ 143 (151)
|.++.++.. ..||-||++...++...++..+.|..
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 566655421 34999999999999989988877753
No 262
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=20.08 E-value=1.2e+02 Score=23.70 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031884 85 LSFRTSEDSLRNAFQ----GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (151)
Q Consensus 85 L~~~~te~~l~~~F~----~~G~i~~~~v~~~~~~g~~kg~afV~f~~~~~a~~Al~~l 139 (151)
+..+.+..+|+.+|- .+|-|.++.+-..+ .......+++.|.+.++|..++..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p-~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEE-CCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEee-cCceeEEEEEEcCCHHHHHHHHHHH
Confidence 444445556776664 35778888776554 3344567899999999999888765
Done!