Query 031885
Match_columns 151
No_of_seqs 132 out of 1138
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 100.0 1.4E-45 3.1E-50 331.1 6.2 138 1-141 206-351 (550)
2 PLN03167 Chaperonin-60 beta su 100.0 7.9E-35 1.7E-39 266.1 10.8 136 1-139 247-389 (600)
3 PRK14104 chaperonin GroEL; Pro 100.0 1E-32 2.2E-37 249.6 10.1 137 1-140 193-336 (546)
4 PRK12852 groEL chaperonin GroE 100.0 2.8E-32 6E-37 246.1 10.4 137 1-140 193-336 (545)
5 CHL00093 groEL chaperonin GroE 100.0 4E-31 8.6E-36 237.9 9.3 136 1-139 192-335 (529)
6 PTZ00114 Heat shock protein 60 100.0 9.2E-31 2E-35 236.9 9.8 137 1-140 204-348 (555)
7 TIGR02348 GroEL chaperonin Gro 100.0 2.3E-29 5.1E-34 226.3 10.1 137 1-140 191-334 (524)
8 PRK12851 groEL chaperonin GroE 100.0 3E-29 6.5E-34 226.6 10.0 137 1-140 193-336 (541)
9 PRK00013 groEL chaperonin GroE 100.0 4.7E-29 1E-33 225.5 10.8 137 1-140 192-335 (542)
10 PRK12850 groEL chaperonin GroE 100.0 4.8E-29 1E-33 225.4 10.2 137 1-140 193-336 (544)
11 PRK12849 groEL chaperonin GroE 99.9 4.4E-28 9.6E-33 219.2 10.2 137 1-140 192-335 (542)
12 cd03344 GroEL GroEL_like type 99.9 3E-27 6.4E-32 212.7 10.6 137 1-140 190-333 (520)
13 COG0459 GroL Chaperonin GroEL 99.9 3.8E-27 8.3E-32 213.1 -0.6 128 1-140 199-331 (524)
14 cd03339 TCP1_epsilon TCP-1 (CT 99.5 2.7E-14 5.9E-19 128.4 7.7 124 1-140 219-368 (526)
15 cd03338 TCP1_delta TCP-1 (CTT 99.5 1.8E-14 3.9E-19 129.0 6.0 120 1-132 203-345 (515)
16 TIGR02343 chap_CCT_epsi T-comp 99.5 3.1E-14 6.8E-19 128.5 7.6 124 1-140 223-372 (532)
17 cd03343 cpn60 cpn60 chaperonin 99.5 1.5E-13 3.2E-18 123.1 8.4 119 1-140 211-358 (517)
18 TIGR02342 chap_CCT_delta T-com 99.5 1.1E-13 2.4E-18 124.3 6.8 125 1-136 204-351 (517)
19 TIGR02345 chap_CCT_eta T-compl 99.4 5.2E-14 1.1E-18 126.6 4.5 123 1-140 211-361 (522)
20 cd03342 TCP1_zeta TCP-1 (CTT o 99.4 7.2E-14 1.6E-18 124.8 4.9 115 1-140 206-324 (484)
21 TIGR02346 chap_CCT_theta T-com 99.4 7.1E-14 1.5E-18 126.2 4.0 116 7-139 234-357 (531)
22 PTZ00212 T-complex protein 1 s 99.4 6.3E-14 1.4E-18 126.5 2.0 128 2-141 210-368 (533)
23 TIGR02339 thermosome_arch ther 99.4 6E-13 1.3E-17 119.5 7.1 119 1-140 214-361 (519)
24 TIGR02340 chap_CCT_alpha T-com 99.3 1.2E-13 2.7E-18 124.6 -0.6 119 1-140 210-363 (536)
25 cd03335 TCP1_alpha TCP-1 (CTT 99.3 5.8E-12 1.2E-16 113.5 8.5 120 1-140 206-359 (527)
26 cd03336 TCP1_beta TCP-1 (CTT o 99.3 1.7E-12 3.7E-17 116.7 3.0 128 2-139 198-354 (517)
27 TIGR02341 chap_CCT_beta T-comp 99.3 2.2E-12 4.8E-17 116.3 3.5 128 2-139 199-355 (519)
28 cd00309 chaperonin_type_I_II c 99.3 1.4E-11 3.1E-16 108.7 8.4 102 1-140 201-308 (464)
29 TIGR02347 chap_CCT_zeta T-comp 99.2 1.5E-11 3.3E-16 111.4 7.5 119 1-140 210-367 (531)
30 cd03333 chaperonin_like chaper 99.2 2.5E-11 5.5E-16 96.4 7.7 94 1-132 65-160 (209)
31 cd03341 TCP1_theta TCP-1 (CTT 99.2 2.9E-11 6.4E-16 107.7 7.1 100 13-140 207-310 (472)
32 PF00118 Cpn60_TCP1: TCP-1/cpn 99.1 2.6E-10 5.7E-15 99.4 8.1 116 3-139 180-323 (485)
33 cd03340 TCP1_eta TCP-1 (CTT or 99.0 1E-09 2.2E-14 98.7 9.9 120 1-139 210-359 (522)
34 TIGR02344 chap_CCT_gamma T-com 98.9 1.8E-09 3.9E-14 97.2 6.8 109 17-140 224-362 (525)
35 cd03337 TCP1_gamma TCP-1 (CTT 98.8 4.3E-09 9.2E-14 94.1 6.0 102 2-140 215-321 (480)
36 cd03334 Fab1_TCP TCP-1 like do 96.9 0.0047 1E-07 51.6 7.6 111 16-140 78-215 (261)
37 KOG0357 Chaperonin complex com 88.2 0.41 9E-06 42.8 2.8 67 45-128 151-219 (400)
38 KOG0360 Chaperonin complex com 82.7 0.74 1.6E-05 42.7 1.8 82 47-143 283-373 (545)
39 COG1880 CdhB CO dehydrogenase/ 77.5 2.3 5E-05 34.3 2.8 62 22-83 9-71 (170)
40 COG1358 RPL8A Ribosomal protei 56.7 9.7 0.00021 28.7 2.3 35 49-83 43-79 (116)
41 TIGR00362 DnaA chromosomal rep 56.5 29 0.00063 30.2 5.6 76 22-104 197-285 (405)
42 PF01985 CRS1_YhbY: CRS1 / Yhb 49.9 31 0.00068 24.0 3.9 63 45-110 12-75 (84)
43 PF07002 Copine: Copine; Inte 49.7 25 0.00054 27.2 3.7 31 26-56 112-142 (146)
44 KOG0359 Chaperonin complex com 47.8 16 0.00034 34.0 2.6 45 94-140 311-358 (520)
45 PRK06893 DNA replication initi 47.1 34 0.00073 27.6 4.2 75 21-101 88-175 (229)
46 PRK06620 hypothetical protein; 41.9 36 0.00077 27.5 3.6 70 23-101 84-161 (214)
47 PF12694 MoCo_carrier: Putativ 41.0 41 0.0009 26.6 3.7 70 24-98 65-142 (145)
48 PRK13600 putative ribosomal pr 40.5 25 0.00053 25.1 2.2 45 37-83 18-62 (84)
49 cd01459 vWA_copine_like VWA Co 36.5 46 0.001 28.1 3.6 36 26-61 160-195 (254)
50 PRK13695 putative NTPase; Prov 35.4 1.4E+02 0.0031 22.5 5.9 37 22-58 94-135 (174)
51 PRK00149 dnaA chromosomal repl 35.2 71 0.0015 28.4 4.7 76 22-104 209-297 (450)
52 COG0459 GroL Chaperonin GroEL 32.8 82 0.0018 29.3 4.9 81 46-141 267-354 (524)
53 KOG0358 Chaperonin complex com 32.6 91 0.002 28.9 5.0 73 45-128 285-358 (534)
54 PF03103 DUF243: Domain of unk 32.1 37 0.00079 25.1 2.0 21 63-83 20-41 (97)
55 COG1847 Jag Predicted RNA-bind 32.0 23 0.00049 29.6 1.0 43 64-109 119-162 (208)
56 COG4148 ModC ABC-type molybdat 28.9 50 0.0011 29.5 2.7 42 20-61 142-191 (352)
57 PF14307 Glyco_tran_WbsX: Glyc 28.5 71 0.0015 27.6 3.5 52 7-59 143-199 (345)
58 cd03340 TCP1_eta TCP-1 (CTT or 27.4 32 0.0007 31.3 1.3 59 47-109 244-312 (522)
59 COG3959 Transketolase, N-termi 27.4 67 0.0015 27.4 3.1 26 35-60 214-242 (243)
60 KOG0363 Chaperonin complex com 25.7 29 0.00062 32.0 0.6 62 66-134 289-354 (527)
61 PF00308 Bac_DnaA: Bacterial d 25.5 2.1E+02 0.0045 23.0 5.6 79 21-105 94-184 (219)
62 PF01808 AICARFT_IMPCHas: AICA 24.4 51 0.0011 29.0 1.9 50 51-110 194-244 (315)
63 PRK14088 dnaA chromosomal repl 23.8 2.1E+02 0.0046 25.7 5.8 72 24-102 194-278 (440)
64 PF05352 Phage_connector: Phag 23.3 1.1E+02 0.0024 26.6 3.7 48 45-102 148-195 (281)
65 TIGR01166 cbiO cobalt transpor 23.2 1.1E+02 0.0024 23.3 3.5 40 21-60 142-188 (190)
66 PRK13809 orotate phosphoribosy 23.0 62 0.0013 26.4 2.0 65 3-82 30-98 (206)
67 PF04810 zf-Sec23_Sec24: Sec23 22.6 49 0.0011 20.0 1.1 12 5-16 9-21 (40)
68 COG4819 EutA Ethanolamine util 22.1 1.1E+02 0.0023 28.2 3.4 31 49-79 407-437 (473)
69 cd02685 MIT_C MIT_C; domain fo 21.3 1E+02 0.0023 24.3 2.9 32 8-44 11-42 (148)
70 TIGR02918 accessory Sec system 20.9 1.7E+02 0.0038 26.6 4.7 57 3-60 142-221 (500)
71 cd03232 ABC_PDR_domain2 The pl 20.2 1.7E+02 0.0037 22.5 3.9 39 22-60 124-169 (192)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=331.10 Aligned_cols=138 Identities=30% Similarity=0.405 Sum_probs=134.3
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|+|||||+|||| |+++++++|||||++|++|+||+++++|+|+| +.+..|||+|||||+++|||++||+||+|++++
T Consensus 206 mkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glq 285 (550)
T KOG0356|consen 206 MKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQ 285 (550)
T ss_pred ccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhcccee
Confidence 899999999999 99999999999999999999999999999999 778889999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec----eeccCCCCCCCceeeEEEEcCCCeeeecCCc
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG----ATNVSFMPLMLGSCKEVRCSDLQFCFPHQSL 141 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~----~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~~ 141 (151)
|| |||| ||||+|++.|+|||++|||+++++ ++|+++++++||.+.++++|||+|+++.|.-
T Consensus 286 V~AvKap---gfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~ 351 (550)
T KOG0356|consen 286 VVAVKAP---GFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKG 351 (550)
T ss_pred EEEEecC---CCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCC
Confidence 99 9999 999999999999999999999999 7899999999999999999999999998753
No 2
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.9e-35 Score=266.15 Aligned_cols=136 Identities=25% Similarity=0.378 Sum_probs=131.9
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||+|||| ||+++|..+|+||+||++|.+|++.++++|+| +.+.++||||+|++|+++||++|++||++|.++
T Consensus 247 ~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~ 326 (600)
T PLN03167 247 MQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLK 326 (600)
T ss_pred EEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccce
Confidence 579999999999 99999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQ 139 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g 139 (151)
++ ||+| +||++|++.|+|||++|||+++++ +++++++.++||+|.+|++++|+|++++|
T Consensus 327 i~aVk~p---~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~ 389 (600)
T PLN03167 327 IAALKAP---GFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGD 389 (600)
T ss_pred EEEEEcc---cCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCC
Confidence 99 9999 999999999999999999999997 57899999999999999999999999977
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=99.98 E-value=1e-32 Score=249.56 Aligned_cols=137 Identities=28% Similarity=0.438 Sum_probs=132.6
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||+|||| +|+++|..+++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||++|+.||++|+++
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~ 272 (546)
T PRK14104 193 MQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLK 272 (546)
T ss_pred EEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceee
Confidence 579999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|++.|+|||++|||+++++ +++++++.++||+|.++++++++|+++.|.
T Consensus 273 i~av~~~---~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~ 336 (546)
T PRK14104 273 VAAVKAP---GFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGA 336 (546)
T ss_pred EEEEecc---CCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCC
Confidence 99 9999 999999999999999999999999 668999999999999999999999999875
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=2.8e-32 Score=246.14 Aligned_cols=137 Identities=28% Similarity=0.452 Sum_probs=132.2
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||+|||| +|+++|..+++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||++|+.||+||+++
T Consensus 193 ~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~ 272 (545)
T PRK12852 193 MKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLK 272 (545)
T ss_pred EEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccce
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|++.|+|||++|||+++++ .+++++++++||+|.++++++++|++++|.
T Consensus 273 i~av~~~---~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~ 336 (545)
T PRK12852 273 VAAVKAP---GFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGA 336 (545)
T ss_pred EEEEecC---CcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCC
Confidence 99 9999 999999999999999999999996 578999999999999999999999999764
No 5
>CHL00093 groEL chaperonin GroEL
Probab=99.97 E-value=4e-31 Score=237.93 Aligned_cols=136 Identities=29% Similarity=0.463 Sum_probs=130.1
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccch-HHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccc
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSK-NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQN 76 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~-~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l 76 (151)
|.||+||+|||| +++++|+++|+||+||++|.+|+.. ++++|+| +.+.++||+|+|++|++++|++|++||++|++
T Consensus 192 ~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~ 271 (529)
T CHL00093 192 MRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIV 271 (529)
T ss_pred EEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccc
Confidence 579999999999 9999999999999999999999998 7899999 88999999999999999999999999999999
Q ss_pred eEE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecC
Q 031885 77 KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQ 139 (151)
Q Consensus 77 ~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g 139 (151)
+++ ||+| +||++||+.|+|||.+|||+++++ .++++++.++||+|.+|++++++|+++.+
T Consensus 272 ~i~avr~~---~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~~ 335 (529)
T CHL00093 272 NVVAVRAP---GFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIAD 335 (529)
T ss_pred eEEEEecC---CCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEec
Confidence 999 9999 999999999999999999999996 57899999999999999999999999963
No 6
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.97 E-value=9.2e-31 Score=236.87 Aligned_cols=137 Identities=34% Similarity=0.515 Sum_probs=131.1
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||+|||| ||+++|..+++||+||++|.+|+++++++|+| +.+.++||+|+|++|+++||+.|+.|+++|+++
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~ 283 (555)
T PTZ00114 204 MSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLK 283 (555)
T ss_pred EEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceE
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec----eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG----ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~----~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|++.|+|||.+|||+++++ ..+++++.++||+|++|++++++|+++.|.
T Consensus 284 i~avk~~---~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~ 348 (555)
T PTZ00114 284 VCAVKAP---GFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGG 348 (555)
T ss_pred EEEEecC---CCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCC
Confidence 99 9999 999999999999999999999998 456888889999999999999999999654
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.96 E-value=2.3e-29 Score=226.28 Aligned_cols=137 Identities=29% Similarity=0.454 Sum_probs=131.9
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|++ +.+.++||+|++++|+++||+.|+.||++|+++
T Consensus 191 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~ 270 (524)
T TIGR02348 191 MQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLN 270 (524)
T ss_pred EEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccc
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|++.|+|||++|||+++++ +++++++.++||+|.++++++++|+++.|.
T Consensus 271 i~avr~~---~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~ 334 (524)
T TIGR02348 271 VCAVKAP---GFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGA 334 (524)
T ss_pred eEEEECC---CccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCC
Confidence 99 9999 999999999999999999999996 578999999999999999999999999874
No 8
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=3e-29 Score=226.63 Aligned_cols=137 Identities=29% Similarity=0.452 Sum_probs=131.8
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|++ +.+.++||+|++++|+++||+.|+.|+++|+++
T Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~ 272 (541)
T PRK12851 193 MQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 272 (541)
T ss_pred EEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCcee
Confidence 479999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||+.|++.|+|||.+|||+++++ +++++++.++||+|++++++++.|++++|.
T Consensus 273 i~av~~p---~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~ 336 (541)
T PRK12851 273 VAAVKAP---GFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGA 336 (541)
T ss_pred EEEEecC---ccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCC
Confidence 99 9999 999999999999999999999996 578899999999999999999999999874
No 9
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=4.7e-29 Score=225.55 Aligned_cols=137 Identities=29% Similarity=0.448 Sum_probs=131.8
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||.|||| +++++|..+++||+||++|.+|+++++++|++ +.+.+.||||++++|+++||++|..|+++|.++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~ 271 (542)
T PRK00013 192 MQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLK 271 (542)
T ss_pred EEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccce
Confidence 479999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|++.|+|||.+|||+++++ .++++++.++||+|.+++++++.+++++|.
T Consensus 272 i~avr~~---~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~ 335 (542)
T PRK00013 272 VVAVKAP---GFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGA 335 (542)
T ss_pred EEEEecC---CcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCC
Confidence 99 9999 999999999999999999999996 578999999999999999999999999764
No 10
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=4.8e-29 Score=225.43 Aligned_cols=137 Identities=30% Similarity=0.447 Sum_probs=131.8
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|++ +.+.++||||++++|+++||+.|..|+++|+++
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~ 272 (544)
T PRK12850 193 MQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLK 272 (544)
T ss_pred EEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccce
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|+..|+|||.+|||+++++ .+++++++++||+|.+|+++++.|++++|.
T Consensus 273 ~~avk~p---~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~ 336 (544)
T PRK12850 273 SVAVKAP---GFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGA 336 (544)
T ss_pred EEEEeCC---CcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCC
Confidence 99 9999 999999999999999999999996 578999999999999999999999999774
No 11
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.95 E-value=4.4e-28 Score=219.23 Aligned_cols=137 Identities=29% Similarity=0.450 Sum_probs=131.4
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|.||+||.|||| ++.++|..+++||+||++|.+|++.+++.|+| +.+.+.||+|++++|+++||..|..||++|.++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~ 271 (542)
T PRK12849 192 MQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 271 (542)
T ss_pred EEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhcccc
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||++|+..|+|||.+|||+++++ .++++++.++||+|++|++++++|++++|.
T Consensus 272 i~avr~~---~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~ 335 (542)
T PRK12849 272 VAAVKAP---GFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGA 335 (542)
T ss_pred EEEEeCC---CccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCC
Confidence 99 9999 999999999999999999999997 578899999999999999999999999774
No 12
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.94 E-value=3e-27 Score=212.68 Aligned_cols=137 Identities=30% Similarity=0.449 Sum_probs=131.0
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
+.||+||.|||| +++++|..+++||+||++|..++++++++|+| +.+.++||+|++++|+++||..|+.|+++|.++
T Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~ 269 (520)
T cd03344 190 MQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLK 269 (520)
T ss_pred EEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCce
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec---eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
++ ||+| +||+.|+..|+|||.+|||+++++ .++++++.++||+|+++++++++++++.|.
T Consensus 270 v~avk~~---~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~ 333 (520)
T cd03344 270 VCAVKAP---GFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGA 333 (520)
T ss_pred EEEEeCC---CCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCC
Confidence 99 9999 999999999999999999999997 478888889999999999999999999764
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.8e-27 Score=213.09 Aligned_cols=128 Identities=27% Similarity=0.336 Sum_probs=120.3
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (151)
|+||+||+|||| +| .+++||+||++|+||+..++.+| + ..+.++||+||+||+++|+|++++.|+++++++
T Consensus 199 ~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~ 272 (524)
T COG0459 199 MVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGAN 272 (524)
T ss_pred EEecCCccCCCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789999999999 88 78889999999999999999999 6 778889999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCceEeec-eeccCCCCCCCceeeEEEEcCCCeeeecCC
Q 031885 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-ATNVSFMPLMLGSCKEVRCSDLQFCFPHQS 140 (151)
Q Consensus 78 v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~-~~l~~~~~~~LG~a~~v~vtkd~T~~l~g~ 140 (151)
+| |++| ||||+|+++|+|++|+||++++++ +. + .+..+|.|+++.+.+|.|....|.
T Consensus 273 ~vvv~~~---gi~D~~~~~L~d~~Ilt~~~v~~~dl~-~--~l~~~~ga~~v~~~~d~t~~~~G~ 331 (524)
T COG0459 273 VVVVKAP---GIDDLAKAYLEDIAILTGRRVKKEDLG-E--RLAKLGGAKIVSVLKDLTTIVLGE 331 (524)
T ss_pred EEEEECC---CCcHHHHHHHHhhcceecceecchhhH-H--HHHHccCceEEeecccCceeecCc
Confidence 77 9999 999999999999999999999988 42 2 778999999999999999999987
No 14
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.51 E-value=2.7e-14 Score=128.39 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=104.2
Q ss_pred CccCCcccCccc-cCCCC-----ceEEeeCceEEEeecc--ccchHH-----------HHHHH--HhhcCCCeEEEEccc
Q 031885 1 MKLKWRPVSSYF-TNQKA-----KDCVLENPFLLILENM--IVSKNI-----------VEQAI--AQADSRPLLIVAEDV 59 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~-----~~~ele~p~ILltd~k--Is~~~~-----------ilp~L--~~~~~rPLlIIAedv 59 (151)
|.|++||.|||| ++.++ ..++||+|++ .++.+ |+++++ +.+.+ +.+.+.||+|++++|
T Consensus 219 ivi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~-~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I 297 (526)
T cd03339 219 IVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF 297 (526)
T ss_pred EEEecccCCCCCCceecCCCEEEEEecccCCcc-ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 468999999999 99888 8899999999 57777 888877 77777 778899999999999
Q ss_pred ccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEE-----EcCCCe
Q 031885 60 EDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVR-----CSDLQF 134 (151)
Q Consensus 60 ~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~-----vtkd~T 134 (151)
+++|+..|.-|++. |||.+ + .++ |+|||.+|||++++. +++++.+.||+|+++. .+++.+
T Consensus 298 ~~~al~~L~~~~I~-----av~~v---~--~~~---LerIa~~tGa~ii~~--l~~l~~~~LG~~~~v~~~~ig~~~~~~ 362 (526)
T cd03339 298 DDEANHLLLQNGLP-----AVRWV---G--GVE---IELIAIATGGRIVPR--FEDLSPEKLGKAGLVREISFGTTKDKM 362 (526)
T ss_pred CHHHHHHHHHCCCE-----EEEeC---C--HHH---HHHHHHHhCCEEecc--hhhCChhhcccCceEEEEEecCCCcEE
Confidence 99999999977766 36777 2 222 999999999999985 6677788999999998 556788
Q ss_pred eeecCC
Q 031885 135 CFPHQS 140 (151)
Q Consensus 135 ~~l~g~ 140 (151)
++++|.
T Consensus 363 ~~i~g~ 368 (526)
T cd03339 363 LVIEGC 368 (526)
T ss_pred EEEECC
Confidence 888764
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.51 E-value=1.8e-14 Score=129.00 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=102.3
Q ss_pred CccCCcccCc----cc-cCCCC---------ceEEeeCceEEEeec-cccch-----HHHHHHH--HhhcCCCeEEEEcc
Q 031885 1 MKLKWRPVSS----YF-TNQKA---------KDCVLENPFLLILEN-MIVSK-----NIVEQAI--AQADSRPLLIVAED 58 (151)
Q Consensus 1 m~fdrGylSp----yF-td~~~---------~~~ele~p~ILltd~-kIs~~-----~~ilp~L--~~~~~rPLlIIAed 58 (151)
|.||+||.|| +| +|++- ++.++++++ +++|. ++.++ +++.+++ +++.+.||+|++++
T Consensus 203 iv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~-~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 281 (515)
T cd03338 203 LVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI-VVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKS 281 (515)
T ss_pred EEEeccccCcCCCCccccCCcEEEEeccccccccccCceE-EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4699999995 58 88876 567888887 66774 66666 6788888 88889999999999
Q ss_pred cccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcCC
Q 031885 59 VEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSDL 132 (151)
Q Consensus 59 v~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtkd 132 (151)
|++|+++.++.|.+++ .+++ |+- .++..|+|||.+|||++++. +++++.++||+|+++.+.+.
T Consensus 282 i~~~~v~~l~~~~l~~-~~I~av~~--------~~~~~LerIa~~tGa~ii~s--l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 282 ILRDAVSDLALHFLAK-LKIMVVKD--------IEREEIEFICKTIGCKPVAS--IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred cccccccHHHHHHHHH-CCceEEec--------CCHHHHHHHHHHHCCEEecc--cccCCHhhCCCCceEEEEEE
Confidence 9999999999999997 8888 883 56778999999999999986 66777889999999999885
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.51 E-value=3.1e-14 Score=128.54 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=105.0
Q ss_pred CccCCcccCccc-cCCCC-----ceEEeeCceEEEeecc--ccchHHH-----------HHHH--HhhcCCCeEEEEccc
Q 031885 1 MKLKWRPVSSYF-TNQKA-----KDCVLENPFLLILENM--IVSKNIV-----------EQAI--AQADSRPLLIVAEDV 59 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~-----~~~ele~p~ILltd~k--Is~~~~i-----------lp~L--~~~~~rPLlIIAedv 59 (151)
|.||+||.+||| ++.++ ..++||.|++ -++.+ |++++++ .+.+ +.+.+.||+|++++|
T Consensus 223 i~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~-~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I 301 (532)
T TIGR02343 223 IIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF 301 (532)
T ss_pred EEEecCcCCCCCCeeecCCcEEEEEeecccccc-ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 468999999999 99888 8899999999 57888 8899877 7778 788899999999999
Q ss_pred ccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEE-----EcCCCe
Q 031885 60 EDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVR-----CSDLQF 134 (151)
Q Consensus 60 ~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~-----vtkd~T 134 (151)
+++++..|.-|++.+ ||-+ |+++ |+|||.+|||+++++ +++++.++||+|++|. .+++++
T Consensus 302 ~~~al~~L~~~~i~~-----v~~~-----~~~~---l~~Ia~~tGa~~i~~--l~~~~~~~LG~a~~v~~~~ig~~~~~~ 366 (532)
T TIGR02343 302 DDEANHLLLQNDLPA-----VRWV-----GGHE---LELIAIATGGRIVPR--FEELSEDKLGKAGLVREISFGTTKDRM 366 (532)
T ss_pred cHHHHHHHHHCCcEE-----EEcC-----CHHH---HHHHHHHhCCEEecc--cccCCHhHCcccceEEEEEecCCcceE
Confidence 999999999997654 6765 3333 999999999999986 6677888999999998 555678
Q ss_pred eeecCC
Q 031885 135 CFPHQS 140 (151)
Q Consensus 135 ~~l~g~ 140 (151)
+++.|.
T Consensus 367 ~~i~~~ 372 (532)
T TIGR02343 367 LVIEQC 372 (532)
T ss_pred EEEECC
Confidence 888654
No 17
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.46 E-value=1.5e-13 Score=123.06 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=98.0
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeecc-------------ccchHHHHHHH-------------HhhcCCCeEE
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIVEQAI-------------AQADSRPLLI 54 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~k-------------Is~~~~ilp~L-------------~~~~~rPLlI 54 (151)
|.|++||.|||| ...++||+||++|.+ +++.+++.+++ +.+.+.||+|
T Consensus 211 ~v~~~~~~~~~m------~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi 284 (517)
T cd03343 211 IVIDKEVVHPGM------PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVF 284 (517)
T ss_pred EEEeccCCCCCC------ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 468999999997 245789999999999 68999999863 4567889999
Q ss_pred EEcccccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEc---C
Q 031885 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCS---D 131 (151)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt---k 131 (151)
++++|+++|+..|. .+|.+ ||+.. +++.|+|||.+|||+++++ +++++.+.||+|+++.+. +
T Consensus 285 ~~~~I~~~al~~l~---~~gI~--~v~~v--------~~~~l~~Ia~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~ig~ 349 (517)
T cd03343 285 CQKGIDDLAQHYLA---KAGIL--AVRRV--------KKSDMEKLARATGAKIVTN--IDDLTPEDLGEAELVEERKVGD 349 (517)
T ss_pred eCCCccHHHHHHHh---HCCcE--EEEeC--------CHHHHHHHHHHhCCEEecc--hhhCChhhCCccceEEEEEECC
Confidence 99999999999885 25543 35544 3678999999999999986 567778899999999998 7
Q ss_pred CCeeeecCC
Q 031885 132 LQFCFPHQS 140 (151)
Q Consensus 132 d~T~~l~g~ 140 (151)
+++++++|.
T Consensus 350 ~~~~~~~~~ 358 (517)
T cd03343 350 DKMVFVEGC 358 (517)
T ss_pred eEEEEEEcC
Confidence 888888663
No 18
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.45 E-value=1.1e-13 Score=124.33 Aligned_cols=125 Identities=10% Similarity=0.113 Sum_probs=105.0
Q ss_pred CccCCcccC----ccc-cCCC---------CceEEeeCceEEEe----eccccc-hHHHHHHH--HhhcCCCeEEEEccc
Q 031885 1 MKLKWRPVS----SYF-TNQK---------AKDCVLENPFLLIL----ENMIVS-KNIVEQAI--AQADSRPLLIVAEDV 59 (151)
Q Consensus 1 m~fdrGylS----pyF-td~~---------~~~~ele~p~ILlt----d~kIs~-~~~ilp~L--~~~~~rPLlIIAedv 59 (151)
|.||+||.| |++ +|++ ..+.++++++++.+ |+.+.. .+++.+++ +.+.+.||+|++++|
T Consensus 204 ivl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I 283 (517)
T TIGR02342 204 LVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSI 283 (517)
T ss_pred EEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 468999998 888 8886 66788899998866 445555 46788888 888899999999999
Q ss_pred ccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEE-EcCCCeee
Q 031885 60 EDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVR-CSDLQFCF 136 (151)
Q Consensus 60 ~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~-vtkd~T~~ 136 (151)
++++++.++.|.+++ .+++ ||- .++..|+|||.+|||+++++ +++++.++||+|++++ ++..++.+
T Consensus 284 ~~~~l~~l~~~~l~~-~~I~av~~--------v~~~~LerIa~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~~~~~~~ 351 (517)
T TIGR02342 284 LRDAVNDLALHFLAK-MKIMVVKD--------IEREEVEFICKTIGCKPIAS--IDHFTADKLGSAELVEEVTTDGGKI 351 (517)
T ss_pred ccccccHHHHHHHhh-CCceEEec--------CCHHHHHHHHHHHCCEEEcc--hhhcCcccCcCCceEEEEEECCeEE
Confidence 999999999999998 8888 884 45778999999999999986 5667788999999999 66666544
No 19
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.45 E-value=5.2e-14 Score=126.62 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=102.5
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEccccc-----chhhhhhcccccc
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED-----KLIGSLILGKTCL 74 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~~-----eaL~tLv~Nk~rg 74 (151)
|.||+||.|||| +++. .++||+||++|.+++.. +.+.|+.|++++++. +++..++.|++++
T Consensus 211 iv~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~---------~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~ 277 (522)
T TIGR02345 211 VAFKKTFSYAGFEQQPK----KFANPKILLLNVELELK---------AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEK 277 (522)
T ss_pred eEEecccCccccccCCc----eeccceEEEEecCcccC---------ccccceEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999 8774 48999999999997643 556799999999999 9999999999998
Q ss_pred cc----eEE-eecCCCCCchhhHhhhhhhhhhhhCceEeec-e-------------eccCCCCCCCceeeEEEEcC---C
Q 031885 75 QN----KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-A-------------TNVSFMPLMLGSCKEVRCSD---L 132 (151)
Q Consensus 75 ~l----~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~-~-------------~l~~~~~~~LG~a~~v~vtk---d 132 (151)
.. +|| ++.| +|++++++|+|.+|+|++++..+ + ++++++.++||+|+.+...+ +
T Consensus 278 i~~~g~~vv~~~~~----i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~ 353 (522)
T TIGR02345 278 IVESGANVVLSKLP----IGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSE 353 (522)
T ss_pred HHhcCCcEEEeCCC----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCe
Confidence 54 888 7776 89999999999999999998877 2 56888889999999887533 3
Q ss_pred CeeeecCC
Q 031885 133 QFCFPHQS 140 (151)
Q Consensus 133 ~T~~l~g~ 140 (151)
+.+++.|.
T Consensus 354 r~~~~~g~ 361 (522)
T TIGR02345 354 RYNYFTGC 361 (522)
T ss_pred EEEEEEcC
Confidence 45555443
No 20
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.44 E-value=7.2e-14 Score=124.82 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=95.4
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEcccccchhhhhhcccccccceEE-
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS- 79 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~- 79 (151)
|.||+||.|||| ..+++||+||++|.+++..++-++.. ...||+|++++|+++|+..|..|+ ++
T Consensus 206 ~~~~~~~~~~~m------~~~~~n~~Ill~~~~le~~~~~~~~~---~~~~lvi~~~~I~~~al~~l~~~~------I~a 270 (484)
T cd03342 206 LVLDHGARHPDM------PKRVENAYILTCNVSLEYEKTEVNSG---FFYSVVINQKGIDPPSLDMLAKEG------ILA 270 (484)
T ss_pred EEEecCCCCCCC------CccccCceEEEEeCCCCCCccccCcE---EEEEEEEeCCCccHHHHHHHHHCC------CeE
Confidence 468999999997 34578999999999999887633321 124799999999999999999994 56
Q ss_pred eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEE---EEcCCCeeeecCC
Q 031885 80 IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEV---RCSDLQFCFPHQS 140 (151)
Q Consensus 80 VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v---~vtkd~T~~l~g~ 140 (151)
||.. +++.|+|||.+|||++++. +++++.++||+|++| .++.++++++.|.
T Consensus 271 v~~~--------~~~~l~~ia~~tGa~ii~~--l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 324 (484)
T cd03342 271 LRRA--------KRRNMERLTLACGGVAMNS--VDDLSPECLGYAGLVYERTLGEEKYTFIEGV 324 (484)
T ss_pred EEeC--------CHHHHHHHHHHhCCEEecc--cccCChhhCcccceEEEEEECCeEEEEEECC
Confidence 8866 3457999999999999986 677888899999999 8999999999765
No 21
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.43 E-value=7.1e-14 Score=126.20 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=97.6
Q ss_pred ccCccc-cCCC-CceEEeeCceEEEeeccccchHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccceEE-ee
Q 031885 7 PVSSYF-TNQK-AKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IA 81 (151)
Q Consensus 7 ylSpyF-td~~-~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~-Vk 81 (151)
|.+||| ++++ ++++++++|+.+..+.+.+ .+++.+.+ +.+.+.||+|.+++|++.++..|- ..+++ ||
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e-~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~------~~~I~av~ 306 (531)
T TIGR02346 234 FSCPLDTATTETKGTVLIHNAEELLNYSKGE-ENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCE------KYNIMVLK 306 (531)
T ss_pred EecCcCCCcccCceEEEECCHHHHHHHHHHH-HHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHH------HCCcEEEe
Confidence 999999 8888 8999999999999887755 68899999 888999999999999997776332 56778 99
Q ss_pred cCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC---CCeeeecC
Q 031885 82 KPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD---LQFCFPHQ 139 (151)
Q Consensus 82 aP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk---d~T~~l~g 139 (151)
.| ++++ |+|||.+|||+++++ +++++.++||+|++|.+++ +...++.+
T Consensus 307 ~~---~~~~-----l~~Ia~~tGa~ii~~--l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~ 357 (531)
T TIGR02346 307 IP---SKFE-----LRRLCKTVGATPLAR--LGAPQPEEIGYVDSVYVSEIGGQKVTVFKQ 357 (531)
T ss_pred cC---CHHH-----HHHHHHHHCCEEecc--cccCCHhHccccceEEEEEECCEEEEEEEc
Confidence 99 8886 679999999999976 6678888999999999887 34455544
No 22
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.41 E-value=6.3e-14 Score=126.49 Aligned_cols=128 Identities=18% Similarity=0.123 Sum_probs=107.7
Q ss_pred ccCCcccCccc-cCCC---CceEEeeCceEEEeeccc--------------cchHHHHHHH--HhhcC---CCeEEEEcc
Q 031885 2 KLKWRPVSSYF-TNQK---AKDCVLENPFLLILENMI--------------VSKNIVEQAI--AQADS---RPLLIVAED 58 (151)
Q Consensus 2 ~fdrGylSpyF-td~~---~~~~ele~p~ILltd~kI--------------s~~~~ilp~L--~~~~~---rPLlIIAed 58 (151)
++++||++||| .|.+ .|..+++||+||++|.++ ++.+++ |.+ ..+.. +++.|++.+
T Consensus 210 si~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~-~~l~~~E~~~i~~~v~~Ii~~g 288 (533)
T PTZ00212 210 TLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKV-AEIEAAEKEKMKNKVDKILAHG 288 (533)
T ss_pred CccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999 8887 889999999999999997 788885 555 43333 699999999
Q ss_pred cccchhhhhhcccccccce---EE-ee-cCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEE---Ec
Q 031885 59 VEDKLIGSLILGKTCLQNK---VS-IA-KPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVR---CS 130 (151)
Q Consensus 59 v~~eaL~tLv~Nk~rg~l~---v~-Vk-aP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---vt 130 (151)
++-.+....|.|...+.|+ ++ || .| . .-++|||.+|||+++++ +++++.++||+|+++. +.
T Consensus 289 v~vvv~~~~I~d~a~~~L~~~~I~avr~v~---~------~~l~rIa~~tGa~iis~--l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 289 CNVFINRQLIYNYPEQLFAEAGIMAIEHAD---F------DGMERLAAALGAEIVST--FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred CeEEEeCCCccHHHHHHHHHCCCEEEecCC---H------HHHHHHHHHhCCEEeec--CCCCCHHHccCCceEEEEEEC
Confidence 9888888888888888888 77 88 56 3 24679999999999986 6677888999999999 88
Q ss_pred CCCeeeecCCc
Q 031885 131 DLQFCFPHQSL 141 (151)
Q Consensus 131 kd~T~~l~g~~ 141 (151)
.++++++.|..
T Consensus 358 ~~~~~~~~~~~ 368 (533)
T PTZ00212 358 EDKLIRFSGCA 368 (533)
T ss_pred CeEEEEEEccC
Confidence 89999998754
No 23
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.39 E-value=6e-13 Score=119.46 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=97.9
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeecc-------------ccchHHHHHHH-------------HhhcCCCeEE
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIVEQAI-------------AQADSRPLLI 54 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~k-------------Is~~~~ilp~L-------------~~~~~rPLlI 54 (151)
|.||+||.|| +|...++||+||++|.+ |++.+++.|++ +.+.+.+|+|
T Consensus 214 ~vi~~~~~~~------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi 287 (519)
T TIGR02339 214 IVVDKEPVHP------GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVF 287 (519)
T ss_pred EEEecCCCCC------CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4688999888 46667899999999998 89999999875 4556889999
Q ss_pred EEcccccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC---
Q 031885 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD--- 131 (151)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk--- 131 (151)
++++|+++|+..|. .+|.+. |+.. ++..|+|||.+|||+++++ +++++.+.||+|+++.+++
T Consensus 288 ~~~~I~~~al~~L~---~~gI~~--v~~v--------~~~~L~rIa~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~ig~ 352 (519)
T TIGR02339 288 CQKGIDDLAQHYLA---KAGILA--VRRV--------KKSDIEKLARATGAKIVSS--IKEITESDLGYAGLVEERKVGD 352 (519)
T ss_pred ECCCccHHHHHHHH---HCCCEE--EecC--------CHHHHHHHHHHhCCEEeCc--hhhCChhhccCCceEEEEEECC
Confidence 99999999999985 444433 4433 3667999999999999986 5566778899999999998
Q ss_pred CCeeeecCC
Q 031885 132 LQFCFPHQS 140 (151)
Q Consensus 132 d~T~~l~g~ 140 (151)
++++++.|.
T Consensus 353 ~~~~~~~~~ 361 (519)
T TIGR02339 353 DKMTFVEGC 361 (519)
T ss_pred eEEEEEEcC
Confidence 888988764
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.34 E-value=1.2e-13 Score=124.56 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=89.8
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeeccccchHHHH------------------------HHH--HhhcCCCeEE
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVE------------------------QAI--AQADSRPLLI 54 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~~il------------------------p~L--~~~~~rPLlI 54 (151)
|.||+||.|| +|..+++||+||++|.+++..++.. +.+ +.+.+..|+|
T Consensus 210 i~i~~~~~~~------~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi 283 (536)
T TIGR02340 210 YALNCTRASQ------QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVL 283 (536)
T ss_pred EEEecccCCC------CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4688898887 5777899999999999998776332 222 3345556666
Q ss_pred EEcccccchhhhhhcccccccceEEeecCCCCCchhhH--hhhhhhhhhhhCceEeec-e---eccCCCCCCCceeeEEE
Q 031885 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKET--KAIMDDLAILTGGQVLNG-A---TNVSFMPLMLGSCKEVR 128 (151)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~R--k~~L~DiAilTGg~vi~~-~---~l~~~~~~~LG~a~~v~ 128 (151)
....|++.++..| +|+| .++.+| ++.|+|||.+|||+++++ . ..++++.++||+|++++
T Consensus 284 ~~k~I~~~a~~~L------------~k~~---I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 284 TTGGIDDMCLKYF------------VEAG---AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred eCCCCcHHHHHHH------------HHCC---cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 6666666666544 4555 555566 788999999999999998 2 34567788899999999
Q ss_pred ---EcCCCeeeecCC
Q 031885 129 ---CSDLQFCFPHQS 140 (151)
Q Consensus 129 ---vtkd~T~~l~g~ 140 (151)
+++++++++.|.
T Consensus 349 ~~~ig~~~~~~i~~~ 363 (536)
T TIGR02340 349 EERIADDECILIKGT 363 (536)
T ss_pred EEEECCeEEEEEEcC
Confidence 999999999764
No 25
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.31 E-value=5.8e-12 Score=113.45 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=94.3
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeeccccchH-----------------------H-HHHHH--HhhcCCCeEE
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKN-----------------------I-VEQAI--AQADSRPLLI 54 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~-----------------------~-ilp~L--~~~~~rPLlI 54 (151)
|.||+||.|| +|...++||+||++|.+++..+ + +.+.+ +.+.+.+|+|
T Consensus 206 ivi~~~~~~~------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi 279 (527)
T cd03335 206 YALNCTRASQ------GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVL 279 (527)
T ss_pred EEEecccCCC------CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3578888777 4666899999999999997621 1 12444 5678999999
Q ss_pred EEcccccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeec-e---eccCCCCCCCceeeEEE-
Q 031885 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-A---TNVSFMPLMLGSCKEVR- 128 (151)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~-~---~l~~~~~~~LG~a~~v~- 128 (151)
++++|+++|+..|.-|. +. ++-. ++..|+|||.+|||+++++ . ..++++.++||+|+++.
T Consensus 280 ~~k~I~d~al~~L~~~~------I~~v~~v--------~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~ 345 (527)
T cd03335 280 TTGGIDDMCLKYFVEAG------AMAVRRV--------KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQ 345 (527)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC--------CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEE
Confidence 99999999999998862 33 4433 4667999999999999998 2 23566777999999999
Q ss_pred --EcCCCeeeecCC
Q 031885 129 --CSDLQFCFPHQS 140 (151)
Q Consensus 129 --vtkd~T~~l~g~ 140 (151)
++.++++++.|.
T Consensus 346 ~~ig~~~~~~i~g~ 359 (527)
T cd03335 346 ERIGDDELILIKGT 359 (527)
T ss_pred EEECCeEEEEEEcC
Confidence 888999999764
No 26
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.27 E-value=1.7e-12 Score=116.72 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=102.8
Q ss_pred ccCCcccCccc-cCCCC---ceEEeeCceEEEeecccc--------------chHHHHHHH-HhhcC---CCeEEEEccc
Q 031885 2 KLKWRPVSSYF-TNQKA---KDCVLENPFLLILENMIV--------------SKNIVEQAI-AQADS---RPLLIVAEDV 59 (151)
Q Consensus 2 ~fdrGylSpyF-td~~~---~~~ele~p~ILltd~kIs--------------~~~~ilp~L-~~~~~---rPLlIIAedv 59 (151)
+++.+|++||| .+... |..+++||+||++|.+++ +.+|+..+. ..+.. +++.|++.++
T Consensus 198 s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv 277 (517)
T cd03336 198 SLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGI 277 (517)
T ss_pred CccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999 76543 477999999999999776 677885544 44443 6999999999
Q ss_pred ccchhhhhhcccccc---cceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC---C
Q 031885 60 EDKLIGSLILGKTCL---QNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD---L 132 (151)
Q Consensus 60 ~~eaL~tLv~Nk~rg---~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk---d 132 (151)
+-.+++..|.|...+ ..+++ ||.| ++.+ |+|||.+|||++++. +++++.+.||+|+++.... +
T Consensus 278 ~~v~~~~~I~~~~~~~l~~~~I~av~~v---~~~~-----L~rIa~~tGa~ii~~--l~~~~~~~LG~~~~v~~~~ig~~ 347 (517)
T cd03336 278 NCFINRQLIYNYPEQLFADAGIMAIEHA---DFDG-----VERLALVTGGEIAST--FDHPELVKLGTCKLIEEIMIGED 347 (517)
T ss_pred eEEEeCCCccHHHHHHHHHCCcEEEecC---CHHH-----HHHHHHHhCCEEecc--cCCCCcccccccceEEEEEECCe
Confidence 999999999999998 45788 9999 6655 899999999999985 6777888999998887544 3
Q ss_pred CeeeecC
Q 031885 133 QFCFPHQ 139 (151)
Q Consensus 133 ~T~~l~g 139 (151)
+.+++.|
T Consensus 348 ~~~~~~~ 354 (517)
T cd03336 348 KLIRFSG 354 (517)
T ss_pred EEEEEEc
Confidence 4455543
No 27
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.27 E-value=2.2e-12 Score=116.27 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=101.4
Q ss_pred ccCCcccCccc-cCCC---CceEEeeCceEEEeeccccchH-------------HHHHHH--HhhcCC---CeEEEEccc
Q 031885 2 KLKWRPVSSYF-TNQK---AKDCVLENPFLLILENMIVSKN-------------IVEQAI--AQADSR---PLLIVAEDV 59 (151)
Q Consensus 2 ~fdrGylSpyF-td~~---~~~~ele~p~ILltd~kIs~~~-------------~ilp~L--~~~~~r---PLlIIAedv 59 (151)
++++||++||| .+.+ .|..+++||+||++|.+++..+ +.++.+ ..+... +..|++.++
T Consensus 199 s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~ 278 (519)
T TIGR02341 199 SLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNI 278 (519)
T ss_pred CcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999 8776 7888999999999999998532 135555 444433 889999999
Q ss_pred ccchhhhhhccc---ccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC---C
Q 031885 60 EDKLIGSLILGK---TCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD---L 132 (151)
Q Consensus 60 ~~eaL~tLv~Nk---~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk---d 132 (151)
+-.+++.+|.|+ ..+..+++ |+.| +++ .|+|||.+|||++++. +++++.++||+|++|+... +
T Consensus 279 ~~v~~~~~I~~~~~~~l~~~~I~~v~~~---~~~-----~l~~ia~~tGa~ii~~--~~~~~~~~lG~~~~v~~~~ig~~ 348 (519)
T TIGR02341 279 NCFINRQLIYNYPEQLFADAGVMAIEHA---DFE-----GIERLALVTGGEIVST--FDHPELVKLGSCDLIEEIMIGED 348 (519)
T ss_pred cEEEECCcCCHHHHHHHHHCCcEEEecC---CHH-----HHHHHHHHhCCEEecc--cccCCccccccCceEEEEEECCE
Confidence 999999999999 55566777 9999 655 4899999999999986 6677788999999877543 4
Q ss_pred CeeeecC
Q 031885 133 QFCFPHQ 139 (151)
Q Consensus 133 ~T~~l~g 139 (151)
+.+++.|
T Consensus 349 ~~~~~~~ 355 (519)
T TIGR02341 349 KLLKFSG 355 (519)
T ss_pred EEEEEEc
Confidence 4555544
No 28
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.27 E-value=1.4e-11 Score=108.66 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=85.8
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEcc-cccchhhhhhcccccccceEE
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAED-VEDKLIGSLILGKTCLQNKVS 79 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAed-v~~eaL~tLv~Nk~rg~l~v~ 79 (151)
+.|++||.+||| ..+++||+||++|.+++. ||||++ |+++|+..|.- .+++
T Consensus 201 i~~~~~~~~~~m------~~~~~n~~Ili~~~~Le~----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 201 MVFDKGYLSPYM------PKRLENAKILLLDCKLEY----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EEEecCCCCCCC------ceeecCceEEEEecCcce----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 468999999997 668999999999999998 999998 99999998776 5556
Q ss_pred -eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC----CCeeeecCC
Q 031885 80 -IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD----LQFCFPHQS 140 (151)
Q Consensus 80 -VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk----d~T~~l~g~ 140 (151)
|+.. +++.|+|||.+|||+++++ +++++.++||+|+++.+.+ .-|.|.++.
T Consensus 253 ~v~~~--------~~~~L~~Ia~~tGa~ii~~--~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~ 308 (464)
T cd00309 253 AVRRV--------RKEDLERIAKATGATIVSR--LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCK 308 (464)
T ss_pred EEEeC--------CHHHHHHHHHHhCCEEecc--cccCCcccCccccEEEEEEEcCeeEEEEEecC
Confidence 7776 3678999999999999987 5677788999999999998 555555443
No 29
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.24 E-value=1.5e-11 Score=111.38 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=88.1
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeeccccchH-------------------------------HHHHHH--Hhh
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKN-------------------------------IVEQAI--AQA 47 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~-------------------------------~ilp~L--~~~ 47 (151)
|.||+||.|||| ..+++||+||++|.+++..+ +|+++. +++
T Consensus 210 iv~~~~~~~~~~------~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 210 LVLDHGARHPDM------PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEEecCcCCCCC------ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 468999999998 22789999999999997553 222221 110
Q ss_pred c--CCC-eEEEEcccccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCcee
Q 031885 48 D--SRP-LLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSC 124 (151)
Q Consensus 48 ~--~rP-LlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a 124 (151)
. +.+ |+|..+.|++.++..|.-+++-+ ++-. ++..|+|||.+|||+++.+ +++++.++||+|
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~-----i~rv--------~~~~le~ia~~tGa~~i~~--l~~~~~~~LG~~ 348 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKEGIMA-----LRRA--------KRRNMERLTLACGGEALNS--VEDLTPECLGWA 348 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHCCceE-----EccC--------CHHHHHHHHHHhCCEEecc--cccCCccccccc
Confidence 1 234 77778999999998776633322 4433 1457999999999999975 677888999999
Q ss_pred eEE---EEcCCCeeeecCC
Q 031885 125 KEV---RCSDLQFCFPHQS 140 (151)
Q Consensus 125 ~~v---~vtkd~T~~l~g~ 140 (151)
++| .+++++++++.|.
T Consensus 349 ~~v~~~~ig~~~~~~i~~~ 367 (531)
T TIGR02347 349 GLVYETSIGEEKYTFIEEV 367 (531)
T ss_pred eEEEEEEECCeEEEEEEcC
Confidence 999 9999999999764
No 30
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.24 E-value=2.5e-11 Score=96.39 Aligned_cols=94 Identities=20% Similarity=0.301 Sum_probs=79.1
Q ss_pred CccCCcccCccccCCCCceEEeeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEcc-cccchhhhhhcccccccceEE
Q 031885 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAED-VEDKLIGSLILGKTCLQNKVS 79 (151)
Q Consensus 1 m~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAed-v~~eaL~tLv~Nk~rg~l~v~ 79 (151)
+.|++||.+|+| ..+++||+||+++.+++. +|+++. |+++|+..|.- .+++
T Consensus 65 v~~~~~~~~~~m------~~~~~n~~Ill~~~~le~----------------vii~~~~I~~~al~~l~~------~~I~ 116 (209)
T cd03333 65 VVFDKGYASPYM------PKRLENAKILLLDCPLEY----------------VVIAEKGIDDLALHYLAK------AGIM 116 (209)
T ss_pred EEEeccccCCCC------CeEcCCCcEEEEeCCeeE----------------EEEecCcccHHHHHHHHH------CCCE
Confidence 358899999986 568899999999999987 888888 99999998776 3344
Q ss_pred -eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcCC
Q 031885 80 -IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSDL 132 (151)
Q Consensus 80 -VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtkd 132 (151)
|+.. ++..|+|||.+|||++++. +++++.+.||+|+++.+.+.
T Consensus 117 ~v~~~--------~~~~l~~ia~~tga~ii~~--~~~~~~~~lG~~~~v~~~~~ 160 (209)
T cd03333 117 AVRRV--------KKEDLERIARATGATIVSS--LEDLTPEDLGTAELVEETKI 160 (209)
T ss_pred EEEeC--------CHHHHHHHHHHHCCEEecc--cccCChhhceeeeEEEEEEE
Confidence 6766 3457899999999999987 56677889999999999987
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.20 E-value=2.9e-11 Score=107.69 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=85.1
Q ss_pred cCCCCceEEeeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEcccccchhhhhhcccccccceEE-eecCCCCCchhh
Q 031885 13 TNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKE 91 (151)
Q Consensus 13 td~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~ 91 (151)
+++..|..+++||+|+++|.+++. +.||+|++++|+++|+.. +|+ .+++ ||.| +.
T Consensus 207 ~~~~~~~~~~~n~~Ili~~~~Le~------------g~~lvi~~~~I~d~al~~--l~~----~~I~av~~~---~~--- 262 (472)
T cd03341 207 REPEGSVKRVKKAKVAVFSCPFDI------------GVNVIVAGGSVGDLALHY--CNK----YGIMVIKIN---SK--- 262 (472)
T ss_pred cccCCCceeccCCcEEEEeccccC------------CCeEEEECCCCCHHHHHH--HHH----CCeEEEEeC---CH---
Confidence 445566689999999999999987 889999999999999997 443 6677 9999 53
Q ss_pred HhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC---CCeeeecCC
Q 031885 92 TKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD---LQFCFPHQS 140 (151)
Q Consensus 92 Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk---d~T~~l~g~ 140 (151)
..|+|||.+|||+++++ +++++.++||+|+++.+.+ +.++++.|.
T Consensus 263 --~~Le~Ia~~tGa~ii~~--~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~ 310 (472)
T cd03341 263 --FELRRLCRTVGATPLPR--LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310 (472)
T ss_pred --HHHHHHHHHhCCEEecc--cccCCHhHCCCceEEEEEEECCeeEEEEEcc
Confidence 34999999999999987 5567788999999999999 888888765
No 32
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.10 E-value=2.6e-10 Score=99.45 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=96.1
Q ss_pred cCCcccCccccCCCCceEEeeCceEEEeeccccchHH-----------------------HHHHH--HhhcCCCeEEEEc
Q 031885 3 LKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNI-----------------------VEQAI--AQADSRPLLIVAE 57 (151)
Q Consensus 3 fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~~-----------------------ilp~L--~~~~~rPLlIIAe 57 (151)
|+++|.++ .|.-.++||.|+++|..++..++ +.+++ +.+.+.+|+|+++
T Consensus 180 ~~~~~~~~------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~ 253 (485)
T PF00118_consen 180 LDKGFSSP------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQK 253 (485)
T ss_dssp ESSSBSST------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESS
T ss_pred eecccccc------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeec
Confidence 55666555 45556699999999999999888 99999 7788899999999
Q ss_pred ccccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEE---EEcCCCe
Q 031885 58 DVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEV---RCSDLQF 134 (151)
Q Consensus 58 dv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v---~vtkd~T 134 (151)
+|+++++..|..|++....+| ++..|++||.+|||+++++. ++++.+.||+|+++ ++..+++
T Consensus 254 ~i~~~~l~~l~~~~I~~i~~v-------------~~~~l~~i~~~tg~~ii~~~--~~l~~~~lG~~~~v~~~~i~~~~~ 318 (485)
T PF00118_consen 254 SIDDEALQYLNKNGILVIRRV-------------SKEDLERIARATGASIISSL--DDLSDEDLGFCKSVEEREIGNKKY 318 (485)
T ss_dssp EBTHHHHHHHHHCTHEEESSE-------------HHHHHHHHHHHHTSBEBSSC--GGSTGGGSEEEEEEEEEEETSSEE
T ss_pred ccccccchhhhhhhhhccccc-------------hHHHHHhhhcccCCcEeccc--ccccchhhhhhhhhhhcccccccc
Confidence 999999999988876553222 46679999999999999883 55556779999999 9999999
Q ss_pred eeecC
Q 031885 135 CFPHQ 139 (151)
Q Consensus 135 ~~l~g 139 (151)
++++|
T Consensus 319 ~~~~~ 323 (485)
T PF00118_consen 319 IFIEG 323 (485)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 99985
No 33
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.05 E-value=1e-09 Score=98.74 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=84.6
Q ss_pred CccCCcccCccc-cCCCCceEEeeCceEEEeecc-------------ccchHH-----------HHHHH--HhhcCCCeE
Q 031885 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENM-------------IVSKNI-----------VEQAI--AQADSRPLL 53 (151)
Q Consensus 1 m~fdrGylSpyF-td~~~~~~ele~p~ILltd~k-------------Is~~~~-----------ilp~L--~~~~~rPLl 53 (151)
+.||+||.|||| +++.+ ++||+||++|.+ ++++.+ +.+.+ +.+.+-.++
T Consensus 210 iv~~k~~~~~~~~~~~~~----~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vv 285 (522)
T cd03340 210 VAFKKTFSYAGFEQQPKK----FKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVV 285 (522)
T ss_pred EEEecccCccccccCCcc----ccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 468999999999 87754 899999999988 445444 34444 556666677
Q ss_pred EEEcccccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEE---Ec
Q 031885 54 IVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVR---CS 130 (151)
Q Consensus 54 IIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---vt 130 (151)
+.-..|++.++..|.-+.+ + ++.+.. +..|++||.+|||+++++ +++++.++||+|+++. +.
T Consensus 286 l~~~~i~d~a~~~l~~~~I---~-~~~~v~---------~~~l~rIa~~tGa~ii~~--l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 286 LSKLPIGDLATQYFADRDI---F-CAGRVP---------EEDLKRVAQATGGSIQTT--VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred EeCCCCcHHHHHHHHHCCc---E-EEEeCC---------HHHHHHHHHHHCCEEeec--cccCCccccccceEEEEEEEC
Confidence 7777788888776655432 2 212222 345899999999999987 6677788999999998 53
Q ss_pred CCCeeeecC
Q 031885 131 DLQFCFPHQ 139 (151)
Q Consensus 131 kd~T~~l~g 139 (151)
.++.+++.|
T Consensus 351 ~~~~~~~~~ 359 (522)
T cd03340 351 GERYNIFTG 359 (522)
T ss_pred CEEEEEEEC
Confidence 334444433
No 34
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.93 E-value=1.8e-09 Score=97.24 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=85.4
Q ss_pred CceEEeeCceEEEeeccccc-------------hHHHHHHH-H---------h--hcCCCeEEEEcccccchhhhhhccc
Q 031885 17 AKDCVLENPFLLILENMIVS-------------KNIVEQAI-A---------Q--ADSRPLLIVAEDVEDKLIGSLILGK 71 (151)
Q Consensus 17 ~~~~ele~p~ILltd~kIs~-------------~~~ilp~L-~---------~--~~~rPLlIIAedv~~eaL~tLv~Nk 71 (151)
+|..+++||+||++|.+++. .+++.+++ . . ...+|.|||++.. ++.+..|.
T Consensus 224 ~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~----I~dla~~~ 299 (525)
T TIGR02344 224 KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKG----VSDLAQHY 299 (525)
T ss_pred CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC----ccHHHHHH
Confidence 78889999999999999976 37777765 1 1 3367999999744 44477788
Q ss_pred ccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCce-eeEEEE---cCCCeeeecCC
Q 031885 72 TCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS-CKEVRC---SDLQFCFPHQS 140 (151)
Q Consensus 72 ~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~-a~~v~v---tkd~T~~l~g~ 140 (151)
+++ .+++ ++ +.+++.|+|||.+|||+++++ +++++.++||+ |+.+.+ ..+.++++.|.
T Consensus 300 l~~-~~I~av~--------~v~~~~LerIa~~tGa~ii~~--l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~ 362 (525)
T TIGR02344 300 LLK-ANISAIR--------RVRKTDNNRIARACGATIVNR--PEELRESDVGTGCGLFEVKKIGDEYFTFFTEC 362 (525)
T ss_pred HhH-CCceEEe--------cCCHHHHHHHHHHhCCeEecc--hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcC
Confidence 877 6676 44 456778999999999999986 56677889999 988888 44788888764
No 35
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.84 E-value=4.3e-09 Score=94.11 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=80.3
Q ss_pred ccCCcccCccccCCCCceEEeeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEcccccchhhhhhcccccccceEE-e
Q 031885 2 KLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-I 80 (151)
Q Consensus 2 ~fdrGylSpyFtd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~-V 80 (151)
.|++|+.+| +|..+++||+||+.|.+++. |+|++++|+++|+..|.-| +++ |
T Consensus 215 vi~k~~~~~------~m~~~~~n~kIlll~~~Le~---------------lvi~~k~I~d~al~~L~~~------~I~~v 267 (480)
T cd03337 215 MLNKDVTHP------KMRRRIENPRIVLLDCPLEY---------------LVITEKGVSDLAQHYLVKA------GITAL 267 (480)
T ss_pred EEeccCCCC------CCCcEecCCCEEEEecCcce---------------EEEeCCCccHHHHHHHHHC------CcEEE
Confidence 355665443 67888999999999998876 9999999999999999887 455 6
Q ss_pred ecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEE----cCCCeeeecCC
Q 031885 81 AKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRC----SDLQFCFPHQS 140 (151)
Q Consensus 81 kaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~v----tkd~T~~l~g~ 140 (151)
+.. ++..|+|||.+|||+++++ +++++.++||+|.++.. .++.++++.|.
T Consensus 268 ~~v--------~~~~L~rIa~~tGa~ii~~--~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~ 321 (480)
T cd03337 268 RRV--------RKTDNNRIARACGATIVNR--PEELTESDVGTGAGLFEVKKIGDEYFTFITEC 321 (480)
T ss_pred EeC--------CHHHHHHHHHHHCCEEecc--hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcC
Confidence 754 4556999999999999987 56677789999655544 44677888654
No 36
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=96.87 E-value=0.0047 Score=51.63 Aligned_cols=111 Identities=14% Similarity=0.254 Sum_probs=74.9
Q ss_pred CCceEEeeCceEEEeeccccch------HHHHHH----------H---HhhcCCCeEEEEcccccchhhhhhcccccccc
Q 031885 16 KAKDCVLENPFLLILENMIVSK------NIVEQA----------I---AQADSRPLLIVAEDVEDKLIGSLILGKTCLQN 76 (151)
Q Consensus 16 ~~~~~ele~p~ILltd~kIs~~------~~ilp~----------L---~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l 76 (151)
++|.-.++||.|++.+..++.. .++-.+ + +...+--+++.-..|++.|+..|.-+ |.
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~---gI- 153 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA---GI- 153 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC---CC-
Confidence 3577788999999998777432 122222 2 45566677777888998888766543 32
Q ss_pred eEEeecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEEEEcC--------CCeeeecCC
Q 031885 77 KVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEVRCSD--------LQFCFPHQS 140 (151)
Q Consensus 77 ~v~VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk--------d~T~~l~g~ 140 (151)
-+ |+-+ . +..|+.||-.|||++++++ .+..+.+.||+|+++.+.+ +..+++.|.
T Consensus 154 ~~-v~~v---~-----~~dl~rIa~~tGa~ii~~i-~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~ 215 (261)
T cd03334 154 TL-VLNV---K-----PSVLERISRCTGADIISSM-DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGC 215 (261)
T ss_pred EE-EEec---C-----HHHHHHHHHHhCCEEecCh-hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecC
Confidence 22 4555 2 2358899999999999872 1356678899999888866 345666543
No 37
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=0.41 Score=42.80 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=50.8
Q ss_pred HhhcCCCeEEEEcccccchhhhhhcccccccceEE--eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCc
Q 031885 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS--IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLG 122 (151)
Q Consensus 45 ~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~--VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG 122 (151)
+.+++.-|.|--=-++.||=..|..|.+.. + |--| .+|=|||.|||+.+.+ +++.+.+.||
T Consensus 151 vK~~ga~l~icqwgfddeanhll~~n~lpa----vrwVGGp-----------EiEliAiaT~grIVpr--F~eL~~~kLG 213 (400)
T KOG0357|consen 151 IKETGANLAICQWGFDDEANHLLLQNNLPA----VRWVGGP-----------EIELIAIATGGRIVPR--FSELTAEKLG 213 (400)
T ss_pred HHhhCCcEEEEecccCchhhhHHhhcCCCc----eeecCCc-----------ceEEEEeecCCeeecc--HhhhCHhhcc
Confidence 667776666666689999977777776554 4 6666 2788999999999987 5667788888
Q ss_pred eeeEEE
Q 031885 123 SCKEVR 128 (151)
Q Consensus 123 ~a~~v~ 128 (151)
+|..|.
T Consensus 214 ~aglVr 219 (400)
T KOG0357|consen 214 FAGLVR 219 (400)
T ss_pred ccceEE
Confidence 887765
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=82.71 E-value=0.74 Score=42.74 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=56.5
Q ss_pred hcCCCeEEEEcccccchhhhhhcccccccceEEeecCCCCCchhh--HhhhhhhhhhhhCceEeec-eec---cCCCCCC
Q 031885 47 ADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKE--TKAIMDDLAILTGGQVLNG-ATN---VSFMPLM 120 (151)
Q Consensus 47 ~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~--Rk~~L~DiAilTGg~vi~~-~~l---~~~~~~~ 120 (151)
.++--++....-|++-.+.-++- |- ..+=| +|+.|+-||=.||+++++. .++ |.+....
T Consensus 283 ~~ganvVLtt~gIddmc~K~~ve------------ag---amAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~ 347 (545)
T KOG0360|consen 283 ATGANVVLTTGGIDDMCLKYFVE------------AG---AMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPAS 347 (545)
T ss_pred hcCCcEEEEcCCccHHHHHHHHH------------cc---hhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhh
Confidence 34556666666666655443332 22 22323 4688999999999999999 333 4667789
Q ss_pred CceeeEEE---EcCCCeeeecCCccc
Q 031885 121 LGSCKEVR---CSDLQFCFPHQSLPL 143 (151)
Q Consensus 121 LG~a~~v~---vtkd~T~~l~g~~~~ 143 (151)
||+|++|. +..|+.++|.|.-.-
T Consensus 348 lG~a~evvqeri~dde~ilikg~ka~ 373 (545)
T KOG0360|consen 348 LGSADEVVQERIGDDELILIKGTKAT 373 (545)
T ss_pred ccchhHHHHHhcccceeEEeccCccc
Confidence 99999874 668999999887544
No 39
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=77.48 E-value=2.3 Score=34.35 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=40.1
Q ss_pred eeCceEEEeeccccchHHHHHHHHhhcCCCeEEEEcccc-cchhhhhhcccccccceEEeecC
Q 031885 22 LENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVE-DKLIGSLILGKTCLQNKVSIAKP 83 (151)
Q Consensus 22 le~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~-~eaL~tLv~Nk~rg~l~v~VkaP 83 (151)
.-+|+..-++|.-+-..+++..++.+++|||+|+.+... +|.+-..+==.-+..++++-.||
T Consensus 9 pfd~~~I~~~K~at~~p~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~ 71 (170)
T COG1880 9 PFDPTNIATSKTATAVPEVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATAS 71 (170)
T ss_pred ccCcccccccchhccccHHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecch
Confidence 345555556654443445555448999999999999987 66666555444555577764555
No 40
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=56.65 E-value=9.7 Score=28.74 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCeEEEEcccccchhhhhhccccc-ccceEE-eecC
Q 031885 49 SRPLLIVAEDVEDKLIGSLILGKTC-LQNKVS-IAKP 83 (151)
Q Consensus 49 ~rPLlIIAedv~~eaL~tLv~Nk~r-g~l~v~-VkaP 83 (151)
+.-|+|||+|++++-+...+-..-+ -.++++ |...
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk 79 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSK 79 (116)
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 3689999999997777766665544 456665 4444
No 41
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=56.49 E-value=29 Score=30.25 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=45.8
Q ss_pred eeCceEEEeeccccc-------hHHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce---EE-eecCCCCCc
Q 031885 22 LENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDY 88 (151)
Q Consensus 22 le~p~ILltd~kIs~-------~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~---v~-VkaP~~~gf 88 (151)
+.++-+|+.|. |.. .++++.++ ..+.+++++| +-+-.++.|..+ ..+++..+. ++ ++.| .+
T Consensus 197 ~~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~p~~l~~l-~~~l~SRl~~g~~v~i~~p---d~ 270 (405)
T TIGR00362 197 YRSVDLLLIDD-IQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRPPKELPGL-EERLRSRFEWGLVVDIEPP---DL 270 (405)
T ss_pred HHhCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCCHHHHhhh-hhhhhhhccCCeEEEeCCC---CH
Confidence 34555777776 432 23577777 4456677655 556666666654 344444443 34 9999 66
Q ss_pred hhhHhhhhhhhhhhhC
Q 031885 89 EKETKAIMDDLAILTG 104 (151)
Q Consensus 89 Gd~Rk~~L~DiAilTG 104 (151)
+.|.++|+..+-.-|
T Consensus 271 -~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 271 -ETRLAILQKKAEEEG 285 (405)
T ss_pred -HHHHHHHHHHHHHcC
Confidence 456778888776433
No 42
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=49.94 E-value=31 Score=24.02 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=39.3
Q ss_pred HhhcCCCeEEEEcccccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeec
Q 031885 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG 110 (151)
Q Consensus 45 ~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~ 110 (151)
.+..-+|.+.|+.+==-+.+..-+-..++. =.++ ||... ...+.++++.+.||-.|||.++..
T Consensus 12 ~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~-~eLvKVk~~~--~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 12 LAHHLKPVVQIGKNGLTDGVIEEIDDALEK-HELVKVKVLG--NCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHTTC--SEEE-TTSS-HHHHHHHHHHHHH-HSEEEEEETT----HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HhcCCCCeEEECCCCCCHHHHHHHHHHHHh-CCeeEEEEcc--CCHHHHHHHHHHHHHHhCCEEEEE
Confidence 344457999998765444444444444443 3455 77772 367889999999999999999865
No 43
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=49.66 E-value=25 Score=27.20 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.7
Q ss_pred eEEEeeccccchHHHHHHHHhhcCCCeEEEE
Q 031885 26 FLLILENMIVSKNIVEQAIAQADSRPLLIVA 56 (151)
Q Consensus 26 ~ILltd~kIs~~~~ilp~L~~~~~rPLlIIA 56 (151)
++.+||..|++.++-.-+++..++-||-||.
T Consensus 112 LlIlTDG~i~D~~~T~~aIv~AS~~PlSIIi 142 (146)
T PF07002_consen 112 LLILTDGQITDMEETIDAIVEASKLPLSIII 142 (146)
T ss_pred EEEecccccccHHHHHHHHHHHccCCeEEEE
Confidence 5688999999999888888666678998875
No 44
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=47.80 E-value=16 Score=34.04 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=37.1
Q ss_pred hhhhhhhhhhCceEeeceeccCCCCCCCceeeEE---EEcCCCeeeecCC
Q 031885 94 AIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEV---RCSDLQFCFPHQS 140 (151)
Q Consensus 94 ~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v---~vtkd~T~~l~g~ 140 (151)
..||.+...|||..+.+ +++.+++.||-|..| ++.++.++|+.+.
T Consensus 311 RNmERL~lacGG~a~ns--vddLtp~~LG~aglVye~tlGEEkfTFIE~~ 358 (520)
T KOG0359|consen 311 RNMERLVLACGGEAVNS--VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKC 358 (520)
T ss_pred hhHHHHHHhhccceecc--cccCChhhccccceeEEeeccceeeEeeecC
Confidence 35799999999998865 788999999999887 4677888888664
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=47.14 E-value=34 Score=27.57 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=47.9
Q ss_pred EeeCceEEEeeccccch-------HHHHHHH--HhhcCCCeEEEEcccccchhhhhhcccccccce---EE-eecCCCCC
Q 031885 21 VLENPFLLILENMIVSK-------NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDD 87 (151)
Q Consensus 21 ele~p~ILltd~kIs~~-------~~ilp~L--~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~---v~-VkaP~~~g 87 (151)
.++++-+|+.|. |..+ +.+..++ ..+.+++++|++-+..++.|.. ....++..+. ++ ++.| .
T Consensus 88 ~~~~~dlLilDD-i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~-~~~~L~sRl~~g~~~~l~~p---d 162 (229)
T PRK06893 88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI-KLPDLASRLTWGEIYQLNDL---T 162 (229)
T ss_pred hcccCCEEEEeC-hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc-cchhHHHHHhcCCeeeCCCC---C
Confidence 456777888887 4432 2455555 4455678889999998888873 2234444343 56 9999 5
Q ss_pred chhhHhhhhhhhhh
Q 031885 88 YEKETKAIMDDLAI 101 (151)
Q Consensus 88 fGd~Rk~~L~DiAi 101 (151)
. +.|.++|+-.|.
T Consensus 163 ~-e~~~~iL~~~a~ 175 (229)
T PRK06893 163 D-EQKIIVLQRNAY 175 (229)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 346667765554
No 46
>PRK06620 hypothetical protein; Validated
Probab=41.86 E-value=36 Score=27.45 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=43.6
Q ss_pred eCceEEEeeccccchHH-HHHHH---HhhcCCCeEEEEcccccchhhhhhcccccccce---EE-eecCCCCCchhhHhh
Q 031885 23 ENPFLLILENMIVSKNI-VEQAI---AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDYEKETKA 94 (151)
Q Consensus 23 e~p~ILltd~kIs~~~~-ilp~L---~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~---v~-VkaP~~~gfGd~Rk~ 94 (151)
.+.-+|+.|. |...++ .+.-+ +.+.++++ +|+-+-.+.-+. + +.++..+. ++ +++| ...+ |++
T Consensus 84 ~~~d~lliDd-i~~~~~~~lf~l~N~~~e~g~~i-lits~~~p~~l~-l--~~L~SRl~~gl~~~l~~p---d~~~-~~~ 154 (214)
T PRK06620 84 EKYNAFIIED-IENWQEPALLHIFNIINEKQKYL-LLTSSDKSRNFT-L--PDLSSRIKSVLSILLNSP---DDEL-IKI 154 (214)
T ss_pred hcCCEEEEec-cccchHHHHHHHHHHHHhcCCEE-EEEcCCCccccc-h--HHHHHHHhCCceEeeCCC---CHHH-HHH
Confidence 3445677776 776653 33333 55667755 555566666554 3 77777777 77 9999 7655 566
Q ss_pred hhhhhhh
Q 031885 95 IMDDLAI 101 (151)
Q Consensus 95 ~L~DiAi 101 (151)
+++-.+-
T Consensus 155 ~l~k~~~ 161 (214)
T PRK06620 155 LIFKHFS 161 (214)
T ss_pred HHHHHHH
Confidence 6665554
No 47
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=40.98 E-value=41 Score=26.56 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=35.9
Q ss_pred CceEEEeeccccchHHHHHHHHhhcCCCeEEEEccccc----chhhhhhcccccccceEE----eecCCCCCchhhHhhh
Q 031885 24 NPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED----KLIGSLILGKTCLQNKVS----IAKPHEDDYEKETKAI 95 (151)
Q Consensus 24 ~p~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~~----eaL~tLv~Nk~rg~l~v~----VkaP~~~gfGd~Rk~~ 95 (151)
|.-+.++..+++--..+--.++.+.+||+++| |.+. +.+...+..+--.+|+|+ =++| |-...-++.
T Consensus 65 DgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i--~~~~~~~~~~v~~wl~~~~i~vLNVAGPReS~~P---gI~~~~~~~ 139 (145)
T PF12694_consen 65 DGTLIFTRGELTGGTALTVEFARKHGKPCLHI--DLSIPEAAAAVAEWLREHNIRVLNVAGPRESKAP---GIYRQVRAF 139 (145)
T ss_dssp SEEEEEESSS--HHHHHHHHHHHHTT--EEEE--TS-HHHHHHHHHHHHHHTT--EEEEE---TTT-T---THHHHHHHH
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHhCCCEEEE--ecCcccHHHHHHHHHHHCCceEEEeccCcccCCC---CHHHHHHHH
Confidence 44455666666644333322288999999999 3332 222223333333468888 6677 877777777
Q ss_pred hhh
Q 031885 96 MDD 98 (151)
Q Consensus 96 L~D 98 (151)
|+.
T Consensus 140 L~~ 142 (145)
T PF12694_consen 140 LEA 142 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 48
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=40.53 E-value=25 Score=25.15 Aligned_cols=45 Identities=27% Similarity=0.143 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhcCCCeEEEEcccccchhhhhhcccccccceEEeecC
Q 031885 37 KNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKP 83 (151)
Q Consensus 37 ~~~ilp~L~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP 83 (151)
++|.+-. +.+...-+++||+|+++.....+..=-....++++ ..|
T Consensus 18 ~kqt~Ka-i~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v-~V~ 62 (84)
T PRK13600 18 LKETLKA-LKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVS-FFK 62 (84)
T ss_pred HHHHHHH-HhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EEC
Confidence 4444433 23344689999999999987766554445556764 445
No 49
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=36.48 E-value=46 Score=28.12 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEeeccccchHHHHHHHHhhcCCCeEEEEccccc
Q 031885 26 FLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED 61 (151)
Q Consensus 26 ~ILltd~kIs~~~~ilp~L~~~~~rPLlIIAedv~~ 61 (151)
++.+||..|++.++..-+++..++.||-||-=-|..
T Consensus 160 LLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd 195 (254)
T cd01459 160 LLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGD 195 (254)
T ss_pred EEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 356789999988888888766667788887755543
No 50
>PRK13695 putative NTPase; Provisional
Probab=35.44 E-value=1.4e+02 Score=22.46 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=18.0
Q ss_pred eeCceEEEeec--cccch-HHHHHHH--HhhcCCCeEEEEcc
Q 031885 22 LENPFLLILEN--MIVSK-NIVEQAI--AQADSRPLLIVAED 58 (151)
Q Consensus 22 le~p~ILltd~--kIs~~-~~ilp~L--~~~~~rPLlIIAed 58 (151)
+++|-+++.|. ..... .++..++ +.+.++|++++.-+
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECc
Confidence 34566666665 22221 1233444 44555666666654
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=35.18 E-value=71 Score=28.39 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=45.7
Q ss_pred eeCceEEEeeccccc-------hHHHHHHH--HhhcCCCeEEEEcccccchhhhh---hcccccccceEE-eecCCCCCc
Q 031885 22 LENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVS-IAKPHEDDY 88 (151)
Q Consensus 22 le~p~ILltd~kIs~-------~~~ilp~L--~~~~~rPLlIIAedv~~eaL~tL---v~Nk~rg~l~v~-VkaP~~~gf 88 (151)
|.++-+|+.|. |.. .++++.++ ..+.+++++|.+ +-.++.|..+ +..|+.++ .++ ++.| .+
T Consensus 209 ~~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits-~~~p~~l~~l~~~l~SRl~~g-l~v~i~~p---d~ 282 (450)
T PRK00149 209 YRSVDVLLIDD-IQFLAGKERTQEEFFHTFNALHEAGKQIVLTS-DRPPKELPGLEERLRSRFEWG-LTVDIEPP---DL 282 (450)
T ss_pred HhcCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHHHhHhcCC-eeEEecCC---CH
Confidence 34566788786 422 24677666 455667765554 5566665542 33444443 345 9999 66
Q ss_pred hhhHhhhhhhhhhhhC
Q 031885 89 EKETKAIMDDLAILTG 104 (151)
Q Consensus 89 Gd~Rk~~L~DiAilTG 104 (151)
+.|.++|+..+---|
T Consensus 283 -~~r~~il~~~~~~~~ 297 (450)
T PRK00149 283 -ETRIAILKKKAEEEG 297 (450)
T ss_pred -HHHHHHHHHHHHHcC
Confidence 567778888776433
No 52
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=82 Score=29.33 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=59.0
Q ss_pred hhcCCC-eEEEEcccccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCce
Q 031885 46 QADSRP-LLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS 123 (151)
Q Consensus 46 ~~~~rP-LlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~ 123 (151)
.+.+.. .++-+..|+.-+.+.|.=+.+ +-+- |+.. +.| +-|+-+|||+.++. .++.+...+|.
T Consensus 267 ~~~g~~~vvv~~~gi~D~~~~~L~d~~I---lt~~~v~~~---dl~-------~~l~~~~ga~~v~~--~~d~t~~~~G~ 331 (524)
T COG0459 267 LRGGANVVVVKAPGIDDLAKAYLEDIAI---LTGRRVKKE---DLG-------ERLAKLGGAKIVSV--LKDLTTIVLGE 331 (524)
T ss_pred HhcCCCEEEEECCCCcHHHHHHHHhhcc---eecceecch---hhH-------HHHHHccCceEEee--cccCceeecCc
Confidence 345678 889999999988887765432 3223 5666 444 26899999998865 56778889998
Q ss_pred --eeEEEEc---CCCeeeecCCc
Q 031885 124 --CKEVRCS---DLQFCFPHQSL 141 (151)
Q Consensus 124 --a~~v~vt---kd~T~~l~g~~ 141 (151)
|..+.-+ .++..++.|+.
T Consensus 332 ~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 332 GAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cccceEEEeeccchhhhhhhhhh
Confidence 8877765 77788888776
No 53
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=32.56 E-value=91 Score=28.95 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=53.5
Q ss_pred HhhcCCCeEEEEcccccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCce
Q 031885 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS 123 (151)
Q Consensus 45 ~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~ 123 (151)
+.+++--+|+|-..+=.||++.|.+.=+.. +++. ||-- .|++ .|=+.-..|.+.+++ ++..+.+.||+
T Consensus 285 IKk~gcnvLliQKSILRdavsDLAlHfL~k-lkimvikdi-------eRed-iefick~l~c~Pia~--id~f~~d~Lg~ 353 (534)
T KOG0358|consen 285 IKKAGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVIKDI-------ERED-IEFICKTLGCKPIAD--IDHFTADKLGS 353 (534)
T ss_pred HHhcCCeEEEEeHHHHHHHHHHHHHHHHHh-CcEEEEccc-------cHhh-HHHHHhhcCCeecch--hhhcChhhcCc
Confidence 667788999999999999999998877775 7777 9988 4432 244444557777665 56677777877
Q ss_pred eeEEE
Q 031885 124 CKEVR 128 (151)
Q Consensus 124 a~~v~ 128 (151)
|.=++
T Consensus 354 adlve 358 (534)
T KOG0358|consen 354 ADLVE 358 (534)
T ss_pred chhhh
Confidence 76544
No 54
>PF03103 DUF243: Domain of unknown function (DUF243); InterPro: IPR004145 This domain is only found in fly proteins. It is found associated with YLP motifs (IPR004019 from INTERPRO) in some proteins.
Probab=32.15 E-value=37 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.1
Q ss_pred hhhhhhcccccccceEE-eecC
Q 031885 63 LIGSLILGKTCLQNKVS-IAKP 83 (151)
Q Consensus 63 aL~tLv~Nk~rg~l~v~-VkaP 83 (151)
.-..++.+..+..++|+ ||||
T Consensus 20 ~~~~~~~~~~~K~yrVvFIKaP 41 (97)
T PF03103_consen 20 QAAHQLAGPPQKHYRVVFIKAP 41 (97)
T ss_pred cchhhhcccCCCCcEEEEEECC
Confidence 34568889999999999 9999
No 55
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=32.05 E-value=23 Score=29.59 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=31.6
Q ss_pred hhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEee
Q 031885 64 IGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLN 109 (151)
Q Consensus 64 L~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~ 109 (151)
|+.+.+|+.-|...=+ |-.- +|=++|++.|..+|.-.=-+|..
T Consensus 119 L~n~~l~~~~g~~~~v~ldv~---~yRerR~e~L~~LA~~~A~rV~~ 162 (208)
T COG1847 119 LANLYLNKIGGKFKRVTLDVG---DYRERRKETLIKLAERAAERVLE 162 (208)
T ss_pred HHHHHhhhhcCcceEEEEEhh---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446788877774444 8888 99999999999999754444443
No 56
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.94 E-value=50 Score=29.47 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=35.5
Q ss_pred EEeeCceEEEeeccccch-----HHHHHHH---HhhcCCCeEEEEccccc
Q 031885 20 CVLENPFLLILENMIVSK-----NIVEQAI---AQADSRPLLIVAEDVED 61 (151)
Q Consensus 20 ~ele~p~ILltd~kIs~~-----~~ilp~L---~~~~~rPLlIIAedv~~ 61 (151)
+-|..|-+|+-|.+++|. +|++|.| ..+.+-|.|-+.-.+++
T Consensus 142 ALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 142 ALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 468899999999999986 4899999 55667799999988865
No 57
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=28.47 E-value=71 Score=27.60 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=39.2
Q ss_pred ccCccccCCCCceEEeeCceEEEeecc-ccchHHHHHHH---HhhcC-CCeEEEEccc
Q 031885 7 PVSSYFTNQKAKDCVLENPFLLILENM-IVSKNIVEQAI---AQADS-RPLLIVAEDV 59 (151)
Q Consensus 7 ylSpyFtd~~~~~~ele~p~ILltd~k-Is~~~~ilp~L---~~~~~-rPLlIIAedv 59 (151)
|+.|||.|+-=.++. ..|.++|.+-. |.++++.+..+ +++.| ..+-|||..-
T Consensus 143 ~l~~~F~D~rYikVd-GKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 143 YLLPYFKDPRYIKVD-GKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred HHHHHhCCCCceeEC-CEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 778999777777776 57999999875 45667777777 67777 4588888764
No 58
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=27.41 E-value=32 Score=31.28 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=43.3
Q ss_pred hcCCCeEEEEccccc-----chhhhhhccccccc----ceEE-eecCCCCCchhhHhhhhhhhhhhhCceEee
Q 031885 47 ADSRPLLIVAEDVED-----KLIGSLILGKTCLQ----NKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLN 109 (151)
Q Consensus 47 ~~~rPLlIIAedv~~-----eaL~tLv~Nk~rg~----l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~ 109 (151)
+.+.++.|..++++. ++...++.|+++.. .+++ ++. ++++.++++|.|-.|++..++-.
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~----~i~d~a~~~l~~~~I~~~~~v~~ 312 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKL----PIGDLATQYFADRDIFCAGRVPE 312 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC----CCcHHHHHHHHHCCcEEEEeCCH
Confidence 334577777777655 55566778887655 7777 555 48999999999999987776643
No 59
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=27.39 E-value=67 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.8
Q ss_pred cchHHHHHHH--HhhcC-CCeEEEEcccc
Q 031885 35 VSKNIVEQAI--AQADS-RPLLIVAEDVE 60 (151)
Q Consensus 35 s~~~~ilp~L--~~~~~-rPLlIIAedv~ 60 (151)
+++++|.+++ ..+.+ ||=+|||+-+-
T Consensus 214 ~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 214 HDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred cCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 5788999999 55544 99999998764
No 60
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=25.71 E-value=29 Score=31.99 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=38.6
Q ss_pred hhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeeceeccCCCCCCCceeeEE---EEcCCCe
Q 031885 66 SLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEV---RCSDLQF 134 (151)
Q Consensus 66 tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v---~vtkd~T 134 (151)
.||+|--...+.-+ |-|=..-.|- -.|.+|..|||.+.|. +++.+...||+|+.+ .+.+|..
T Consensus 289 QLiYnyPeqLf~dagi~aIEHADFd-----GiERLalvtGGeI~ST--Fd~p~~~klG~C~~IeeimiGed~l 354 (527)
T KOG0363|consen 289 QLIYNYPEQLFADAGIMAIEHADFD-----GIERLALVTGGEIVST--FDNPELVKLGECDLIEEIMIGEDKL 354 (527)
T ss_pred hHhhcCHHHHHhhcCcceeecccch-----hHHHHhhcccceeeec--cCCcchhccccchhhHHHhcCccce
Confidence 36666555555444 4333000342 2577999999998875 667777889999764 3555543
No 61
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=25.53 E-value=2.1e+02 Score=22.97 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=46.2
Q ss_pred EeeCceEEEeeccccch-------HHHHHHH--HhhcCCCeEEEEcccccchhhh---hhcccccccceEEeecCCCCCc
Q 031885 21 VLENPFLLILENMIVSK-------NIVEQAI--AQADSRPLLIVAEDVEDKLIGS---LILGKTCLQNKVSIAKPHEDDY 88 (151)
Q Consensus 21 ele~p~ILltd~kIs~~-------~~ilp~L--~~~~~rPLlIIAedv~~eaL~t---Lv~Nk~rg~l~v~VkaP~~~gf 88 (151)
.|++.-+|+.|. |..+ +++.-++ ..+.++++ |++-+..++.|.. =+.+|+.+++.+-++.| ..
T Consensus 94 ~~~~~DlL~iDD-i~~l~~~~~~q~~lf~l~n~~~~~~k~l-i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p---d~ 168 (219)
T PF00308_consen 94 RLRSADLLIIDD-IQFLAGKQRTQEELFHLFNRLIESGKQL-ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP---DD 168 (219)
T ss_dssp HHCTSSEEEEET-GGGGTTHHHHHHHHHHHHHHHHHTTSEE-EEEESS-TTTTTTS-HHHHHHHHCSEEEEE-------H
T ss_pred hhhcCCEEEEec-chhhcCchHHHHHHHHHHHHHHhhCCeE-EEEeCCCCccccccChhhhhhHhhcchhhcCCC---CH
Confidence 456667777775 3332 3455555 56667775 5555667776663 25577877766559999 66
Q ss_pred hhhHhhhhhhhhhhhCc
Q 031885 89 EKETKAIMDDLAILTGG 105 (151)
Q Consensus 89 Gd~Rk~~L~DiAilTGg 105 (151)
+.|+++|+..|---|-
T Consensus 169 -~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 169 -EDRRRILQKKAKERGI 184 (219)
T ss_dssp -HHHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 6677788887764443
No 62
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=24.38 E-value=51 Score=28.97 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=31.9
Q ss_pred CeEEEEcccccchhhhhhcccccccceEE-eecCCCCCchhhHhhhhhhhhhhhCceEeec
Q 031885 51 PLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG 110 (151)
Q Consensus 51 PLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfGd~Rk~~L~DiAilTGg~vi~~ 110 (151)
==+|||.|+++|||..|-- |..++++ ++.+ . ..+. -.++--+.||-++-+
T Consensus 194 ~EviiAP~f~~eAleiL~~---KKnlRll~~~~~---~--~~~~--~~~~r~v~GG~LvQ~ 244 (315)
T PF01808_consen 194 LEVIIAPDFTPEALEILKK---KKNLRLLKLPDP---P--NSKP--ELEFRSVDGGLLVQD 244 (315)
T ss_dssp EEEEEESEB-HHHHHHHHC---TCCGEEEEEEES---T--TC----SEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHh---cCCeEEEEeccc---c--cCCC--CeEEEEEeccEEEEc
Confidence 4489999999999997743 3578887 5554 1 1111 345666688876655
No 63
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=23.79 E-value=2.1e+02 Score=25.67 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=43.0
Q ss_pred CceEEEeeccccch-------HHHHHHH--HhhcCCCeEEEEcccccchhhhh---hcccccccceEE-eecCCCCCchh
Q 031885 24 NPFLLILENMIVSK-------NIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVS-IAKPHEDDYEK 90 (151)
Q Consensus 24 ~p~ILltd~kIs~~-------~~ilp~L--~~~~~rPLlIIAedv~~eaL~tL---v~Nk~rg~l~v~-VkaP~~~gfGd 90 (151)
+|-+|+.|. +... ++++-++ ..+.+++++|.+ |-.++-|..+ +..|+.+++ ++ +++| .+ +
T Consensus 194 ~~dvLlIDD-i~~l~~~~~~q~elf~~~n~l~~~~k~iIits-d~~p~~l~~l~~rL~SR~~~gl-~v~i~~p---d~-e 266 (440)
T PRK14088 194 KVDVLLIDD-VQFLIGKTGVQTELFHTFNELHDSGKQIVICS-DREPQKLSEFQDRLVSRFQMGL-VAKLEPP---DE-E 266 (440)
T ss_pred cCCEEEEec-hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC-CCCHHHHHHHHHHHhhHHhcCc-eEeeCCC---CH-H
Confidence 567788887 3321 3566666 445566655544 5666666654 333444332 55 9999 66 4
Q ss_pred hHhhhhhhhhhh
Q 031885 91 ETKAIMDDLAIL 102 (151)
Q Consensus 91 ~Rk~~L~DiAil 102 (151)
.|.++|+-.|-.
T Consensus 267 ~r~~IL~~~~~~ 278 (440)
T PRK14088 267 TRKKIARKMLEI 278 (440)
T ss_pred HHHHHHHHHHHh
Confidence 677788777654
No 64
>PF05352 Phage_connector: Phage Connector (GP10); InterPro: IPR008016 This entry represents the upper collar protein (also known as head-tail connector protein or late protein Gp10) from various bacteriophage. The upper collar protein of Bacteriophage phi-29 is composed of twelve 36 kDa subunits with 12-fold symmetry. It consists of two domains: an alpha-helical bundle domain and a beta-barrel domain. This protein is located between the head and the tail of the bacteriophage and acts as the central component of a rotary motor that packages the genomic dsDNA into pre-formed proheads. This motor consists of the upper collar protein, surrounded by a 29-encoded, 174-base, RNA and a viral ATPase protein []. ; PDB: 1IJG_I 1JNB_G 1H5W_A 1FOU_C.
Probab=23.31 E-value=1.1e+02 Score=26.63 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=30.7
Q ss_pred HhhcCCCeEEEEcccccchhhhhhcccccccceEEeecCCCCCchhhHhhhhhhhhhh
Q 031885 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAIL 102 (151)
Q Consensus 45 ~~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfGd~Rk~~L~DiAil 102 (151)
..+.++|.+|+|+|-....+. =++|+..++-+|+.-.| +|+ .++|-++
T Consensus 148 ~~~qk~P~~I~a~~~n~~S~k-nl~n~i~~g~pvv~~~~---~~d------~D~I~v~ 195 (281)
T PF05352_consen 148 LNAQKKPYFIFASDNNQLSVK-NLVNKIENGEPVVFVTK---GLD------FDDIKVF 195 (281)
T ss_dssp HHHTT-SEEEEESSGSSSHTT-THHHH--SSSSEEEE-T---T--------TTSEEEE
T ss_pred HHhccCCEEEEecCCchhhHH-HHHHHhhCCCceEEecC---CCC------ccchhhh
Confidence 345578999999998855444 56699999999985566 776 5666554
No 65
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.23 E-value=1.1e+02 Score=23.28 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=25.7
Q ss_pred EeeCceEEEeeccccch-----HHHHHHH--HhhcCCCeEEEEcccc
Q 031885 21 VLENPFLLILENMIVSK-----NIVEQAI--AQADSRPLLIVAEDVE 60 (151)
Q Consensus 21 ele~p~ILltd~kIs~~-----~~ilp~L--~~~~~rPLlIIAedv~ 60 (151)
-+.+|-+|+.|.+-+.+ +.+..+| ..+.++.++++.-|.+
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 142 VAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 34578888888887654 3455555 4444667777776654
No 66
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=23.04 E-value=62 Score=26.36 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=39.4
Q ss_pred cCCcccCccc-cCCCCceEEeeCceEEEeeccccchHHHHHHHH--hhcCCCeEEEEcccccchhhhhhcccccccceEE
Q 031885 3 LKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAIA--QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS 79 (151)
Q Consensus 3 fdrGylSpyF-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L~--~~~~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~ 79 (151)
+-.|.-|||| .-.. .+.+|..+ +.+.-.++ .+....=.|++-+..+-.+++.+..++. ++.+
T Consensus 30 L~SG~~S~~y~D~~~----i~~~p~~l---------~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~--~p~~ 94 (206)
T PRK13809 30 LASGEETPIYVDMRL----VISSPEVL---------QTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYN--IPMV 94 (206)
T ss_pred ECCcCCCCEEEEChh----hccCHHHH---------HHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhC--CCEE
Confidence 4578999998 4322 44444322 22222331 1222456789999999999999988863 5555
Q ss_pred -eec
Q 031885 80 -IAK 82 (151)
Q Consensus 80 -Vka 82 (151)
++.
T Consensus 95 ~~RK 98 (206)
T PRK13809 95 LRRK 98 (206)
T ss_pred EEeC
Confidence 554
No 67
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=22.61 E-value=49 Score=20.02 Aligned_cols=12 Identities=0% Similarity=0.055 Sum_probs=6.5
Q ss_pred CcccCccc-cCCC
Q 031885 5 WRPVSSYF-TNQK 16 (151)
Q Consensus 5 rGylSpyF-td~~ 16 (151)
++|++||. -+..
T Consensus 9 ~aylNp~~~~~~~ 21 (40)
T PF04810_consen 9 RAYLNPFCQFDDG 21 (40)
T ss_dssp --BS-TTSEEETT
T ss_pred CCEECCcceEcCC
Confidence 68999999 4443
No 68
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=22.12 E-value=1.1e+02 Score=28.16 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCCeEEEEcccccchhhhhhcccccccceEE
Q 031885 49 SRPLLIVAEDVEDKLIGSLILGKTCLQNKVS 79 (151)
Q Consensus 49 ~rPLlIIAedv~~eaL~tLv~Nk~rg~l~v~ 79 (151)
.+||+++||.==+.||..++.-++.|.++..
T Consensus 407 ~hplivv~~~D~gKaLGq~l~~~l~~~~pli 437 (473)
T COG4819 407 PHPLIVVAEQDFGKALGQLLRPQLPGQLPLI 437 (473)
T ss_pred CCcEEEEEhhHHHHHHHHHhcccCCCCccEE
Confidence 5799999999899999999999999988765
No 69
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=21.35 E-value=1e+02 Score=24.30 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=20.4
Q ss_pred cCccccCCCCceEEeeCceEEEeeccccchHHHHHHH
Q 031885 8 VSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAI 44 (151)
Q Consensus 8 lSpyFtd~~~~~~ele~p~ILltd~kIs~~~~ilp~L 44 (151)
..||++|.- .++.++||||= .-..++-++.++
T Consensus 11 Fg~Yl~d~~-~~I~ieDPYir----~~hQi~Nl~~F~ 42 (148)
T cd02685 11 FGPYLDDGV-TEITVEDPYIR----NFHQIRNFLRFC 42 (148)
T ss_pred HHHHHhCCc-eEEEEeCcccc----chHHHHHHHHHH
Confidence 479995433 48999999973 223445555555
No 70
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=20.88 E-value=1.7e+02 Score=26.65 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=34.4
Q ss_pred cC-CcccCccc-cCCCCceEEeeC-------------------ceEEEeeccccchHHHHHHH--HhhcCCCeEEEEccc
Q 031885 3 LK-WRPVSSYF-TNQKAKDCVLEN-------------------PFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDV 59 (151)
Q Consensus 3 fd-rGylSpyF-td~~~~~~ele~-------------------p~ILltd~kIs~~~~ilp~L--~~~~~rPLlIIAedv 59 (151)
|| |||.|-|| ++..+.+...+. -|+| .|+...+.+++.... ..+..+|=++|++.-
T Consensus 142 yd~~~~~s~~~~~~~~~~~i~~~~~~~~~G~~~~e~~~~~~~~~~~~-~~~~f~~~~~l~~~f~~~L~~~~~di~i~dr~ 220 (500)
T TIGR02918 142 YSYTRYFSEYYAPADNKAKLYQRTFYNEDGSIAYEEYIDGDESIFVF-PDKILYSKQELIAYFLKQLNLTKKDIIILDRS 220 (500)
T ss_pred EeCCceEEEEccCCCcCCcEEEEEEECCCCcEEEEeeeCCCeeEEEE-eeeEECCHHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 45 99999999 653322222222 1334 488888888988877 233445556777543
Q ss_pred c
Q 031885 60 E 60 (151)
Q Consensus 60 ~ 60 (151)
.
T Consensus 221 ~ 221 (500)
T TIGR02918 221 T 221 (500)
T ss_pred c
Confidence 3
No 71
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.19 E-value=1.7e+02 Score=22.52 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=20.8
Q ss_pred eeCceEEEeeccccch-----HHHHHHH--HhhcCCCeEEEEcccc
Q 031885 22 LENPFLLILENMIVSK-----NIVEQAI--AQADSRPLLIVAEDVE 60 (151)
Q Consensus 22 le~p~ILltd~kIs~~-----~~ilp~L--~~~~~rPLlIIAedv~ 60 (151)
+.+|-+|+.|.+-+.+ +.+..+| ..+.++.++++.-|.+
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 4466666666665544 2344444 3333556666666654
Done!