BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031886
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure
 pdb|3B6I|B Chain B, Wrba From Escherichia Coli, Native Structure
 pdb|3B6J|A Chain A, Wrba From Escherichia Coli, Nadh Complex
 pdb|3B6J|B Chain B, Wrba From Escherichia Coli, Nadh Complex
 pdb|3B6K|A Chain A, Wrba From Escherichia Coli, Benzoquinone Complex
 pdb|3B6K|B Chain B, Wrba From Escherichia Coli, Benzoquinone Complex
 pdb|3B6M|A Chain A, Wrba From Escherichia Coli, Second Crystal Form
 pdb|3B6M|B Chain B, Wrba From Escherichia Coli, Second Crystal Form
 pdb|2R96|A Chain A, Crystal Structure Of E. Coli Wrba In Complex With Fmn
 pdb|2R96|C Chain C, Crystal Structure Of E. Coli Wrba In Complex With Fmn
 pdb|2R97|A Chain A, Crystal Structure Of E. Coli Wrba In Complex With Fmn
 pdb|2R97|C Chain C, Crystal Structure Of E. Coli Wrba In Complex With Fmn
 pdb|2RG1|A Chain A, Crystal Structure Of E. Coli Wrba Apoprotein
 pdb|2RG1|B Chain B, Crystal Structure Of E. Coli Wrba Apoprotein
          Length = 198

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 97/150 (64%), Gaps = 3/150 (2%)

Query: 2   KAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAG 61
           KA  KT   PV  P +L + D  +FG P+RFG M+ Q + F D T  LWAS AL GK A 
Sbjct: 50  KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLAS 109

Query: 62  IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA- 120
           +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A 
Sbjct: 110 VFSSTG-TGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAG 167

Query: 121 ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150
            DGSRQP+  EL  A +QG+YVA +A KL 
Sbjct: 168 GDGSRQPSQEELSIARYQGEYVAGLAVKLN 197


>pdb|1ZWK|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa
 pdb|1ZWK|B Chain B, Structure Of Wrba From Pseudomonas Aeruginosa
 pdb|1ZWL|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa In Complex
           With Fmn
          Length = 207

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 17  QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELT 76
            LK   G   G P+RFG MA+  K F D T  LW + +L GKPA +F ST    GGQE T
Sbjct: 75  DLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETT 134

Query: 77  ALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQA 135
            L+ +  L HHGML + + Y+    + E     GG+ YGA  FA ADG R   + EL   
Sbjct: 135 QLSMLLPLLHHGMLVLGIPYS-EPALLETR--GGGTPYGASHFAGADGKRSLDEHELTLC 191

Query: 136 FHQGKYVAEIAKKLK 150
              GK +AE A KL+
Sbjct: 192 RALGKRLAETAGKLE 206


>pdb|2ZKI|A Chain A, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|B Chain B, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|C Chain C, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|D Chain D, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|E Chain E, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|F Chain F, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|G Chain G, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
 pdb|2ZKI|H Chain H, Crystal Structure Of Hypothetical Trp Repressor Binding
           Protein From Sul Folobus Tokodaii (St0872)
          Length = 199

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 6   KTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65
           K  D+P +    ++ ADGF  G P+R+G MA   K F D T  LW    L GKP   F  
Sbjct: 56  KVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTE 115

Query: 66  TGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEM-NEVKGGSSYGAGTFAADGS 124
                GG E T LT  T   H GM+ VP+GY    G+ E+     GG  YGA      GS
Sbjct: 116 ASTVHGGHETTILTMSTYAYHFGMIIVPIGY----GIPELFQTTTGGGPYGATHL---GS 168

Query: 125 RQPTD-LELQQAFHQGKYVAEIAKKLK 150
           ++  D +E + A  QGK + E+AK +K
Sbjct: 169 KEELDEMERKIARFQGKRITEVAKAIK 195


>pdb|2A5L|A Chain A, The Crystal Structure Of The Trp Repressor Binding Protein
           Wrba From Pseudomonas Aeruginosa
 pdb|2A5L|B Chain B, The Crystal Structure Of The Trp Repressor Binding Protein
           Wrba From Pseudomonas Aeruginosa
          Length = 200

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 16  HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQEL 75
             LK   G   G P+RFG  A+  K F D T  LW + +L GKPA +F ST    GGQE 
Sbjct: 67  EDLKNCAGLALGSPTRFGNXASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQET 126

Query: 76  TALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQ 134
           T L+ +  L HHG L + + Y+    + E     GG+ YGA  FA ADG R   + EL  
Sbjct: 127 TQLSXLLPLLHHGXLVLGIPYSE-PALLETR--GGGTPYGASHFAGADGKRSLDEHELTL 183

Query: 135 AFHQGKYVAEIAKKL 149
               GK +AE A KL
Sbjct: 184 CRALGKRLAETAGKL 198


>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba
          Length = 211

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 9   DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 68
           DVP   P  L+ A+  +F  P+RFG   +Q +AF D    LW+S  LA K      S   
Sbjct: 67  DVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQN 126

Query: 69  HGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV---KGGSSYGAGTFAADGSR 125
             GGQE T  T      H G +  P GYT        +EV    GG+ YGA +  A+G  
Sbjct: 127 VNGGQETTLQTLYMTAMHWGAVLTPPGYT--------DEVIFKSGGNPYGA-SVTANG-- 175

Query: 126 QPTDLELQQAF--HQGKYVAEIAKKL 149
           QP  LE  +A   HQ +   E+  KL
Sbjct: 176 QPL-LENDRASIRHQVRRQVELTAKL 200


>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
          Length = 211

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 9   DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 68
           DVP   P  L+ A+  +F  P+RFG   +Q +AF D    LW+S  LA K      S   
Sbjct: 67  DVPEATPADLEWAEAIVFSSPTRFGGATSQXRAFIDTLGGLWSSGKLANKTFSAXTSAQN 126

Query: 69  HGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV---KGGSSYGAGTFAADGSR 125
             GGQE T  T      H G +  P GYT        +EV    GG+ YGA +  A+G  
Sbjct: 127 VNGGQETTLQTLYXTAXHWGAVLTPPGYT--------DEVIFKSGGNPYGA-SVTANG-- 175

Query: 126 QPTDLELQQAF--HQGKYVAEIAKKL 149
           QP  LE  +A   HQ +   E+  KL
Sbjct: 176 QPL-LENDRASIRHQVRRQVELTAKL 200


>pdb|3D7N|A Chain A, The Crystal Structure Of The Flavodoxin, Wrba-Like Protein
           From Agrobacterium Tumefaciens
          Length = 193

 Score = 32.0 bits (71), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 26  FGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLA 85
           FG P+  G  + Q K F DA+ + W S     K  G F +      G +L  L  +  LA
Sbjct: 60  FGTPTYXGGPSWQFKKFADASSKPWFSAKWQDKVFGGF-TNSASLNGDKLNTLQYLVLLA 118

Query: 86  -HHGMLFVPLGYTFGSGMFEM-NEVKGGSSYGAGTFAADGSRQPTDL---ELQQAFHQGK 140
             HG L+V LG    +    + N+     SY A    +D    P +    +L+ A   G 
Sbjct: 119 GQHGGLWVSLGIKPSNLKSSVRNDANRXGSYIAPXAQSDADAAPEEXSVGDLETARLYGA 178

Query: 141 YVAEIAKKLK 150
            VA +A++ K
Sbjct: 179 RVANVARQHK 188


>pdb|2ARK|A Chain A, Structure Of A Flavodoxin From Aquifex Aeolicus
 pdb|2ARK|B Chain B, Structure Of A Flavodoxin From Aquifex Aeolicus
 pdb|2ARK|C Chain C, Structure Of A Flavodoxin From Aquifex Aeolicus
 pdb|2ARK|D Chain D, Structure Of A Flavodoxin From Aquifex Aeolicus
 pdb|2ARK|E Chain E, Structure Of A Flavodoxin From Aquifex Aeolicus
 pdb|2ARK|F Chain F, Structure Of A Flavodoxin From Aquifex Aeolicus
          Length = 188

 Score = 31.6 bits (70), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 21  ADGFLFGFPSRFGVMAAQCKAFFDATY-ELWASQALAGKPAGIFWSTGFHGGGQELTALT 79
           ADG   G P+  G+++ + K FFD    +LW    + GK A  F S+G  GGG E+   +
Sbjct: 53  ADGLAVGSPTNXGLVSWKXKRFFDDVLGDLWGE--IDGKIACAFSSSGGWGGGNEVACXS 110

Query: 80  AVTQLAHHGML 90
            +T L + G L
Sbjct: 111 ILTXLXNFGFL 121


>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
 pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
 pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
 pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
 pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
 pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
 pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
 pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
          Length = 2695

 Score = 27.3 bits (59), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 14/53 (26%)

Query: 43   FDATYELWASQALAGKPAGIFWS-------TGFHGGGQELTALTAVTQLAHHG 88
             D   +LW SQ   GK +G+ WS       + FH        +TA T+L  HG
Sbjct: 2507 LDTVKDLWGSQFFTGKISGV-WSVYCTFLLSWFHA------LITARTRLVPHG 2552


>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
 pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
          Length = 2486

 Score = 27.3 bits (59), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 14/53 (26%)

Query: 43   FDATYELWASQALAGKPAGIFWS-------TGFHGGGQELTALTAVTQLAHHG 88
             D   +LW SQ   GK +G+ WS       + FH        +TA T+L  HG
Sbjct: 2298 LDTVKDLWGSQFFTGKISGV-WSVYCTFLLSWFHA------LITARTRLVPHG 2343


>pdb|2Y7T|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2YI2|A Chain A, Grapevine Fanleaf Virus
 pdb|2YI2|B Chain B, Grapevine Fanleaf Virus
 pdb|2YI2|C Chain C, Grapevine Fanleaf Virus
 pdb|2YI2|D Chain D, Grapevine Fanleaf Virus
 pdb|2YI2|E Chain E, Grapevine Fanleaf Virus
 pdb|2YI2|F Chain F, Grapevine Fanleaf Virus
 pdb|2YI2|G Chain G, Grapevine Fanleaf Virus
 pdb|2YI2|H Chain H, Grapevine Fanleaf Virus
 pdb|2YI2|I Chain I, Grapevine Fanleaf Virus
 pdb|2YI2|J Chain J, Grapevine Fanleaf Virus
 pdb|2YI2|K Chain K, Grapevine Fanleaf Virus
 pdb|2YI2|L Chain L, Grapevine Fanleaf Virus
 pdb|2YI2|M Chain M, Grapevine Fanleaf Virus
 pdb|2YI2|N Chain N, Grapevine Fanleaf Virus
 pdb|2YI2|O Chain O, Grapevine Fanleaf Virus
 pdb|2YI2|P Chain P, Grapevine Fanleaf Virus
 pdb|2YI2|Q Chain Q, Grapevine Fanleaf Virus
 pdb|2YI2|R Chain R, Grapevine Fanleaf Virus
 pdb|2YI2|S Chain S, Grapevine Fanleaf Virus
 pdb|2YI2|T Chain T, Grapevine Fanleaf Virus
 pdb|2YI3|A Chain A, Grapevine Fanleaf Virus
 pdb|2YI3|B Chain B, Grapevine Fanleaf Virus
 pdb|2YI3|C Chain C, Grapevine Fanleaf Virus
 pdb|2YI3|D Chain D, Grapevine Fanleaf Virus
 pdb|2YI3|E Chain E, Grapevine Fanleaf Virus
 pdb|2YI3|F Chain F, Grapevine Fanleaf Virus
 pdb|2YI3|G Chain G, Grapevine Fanleaf Virus
 pdb|2YI3|H Chain H, Grapevine Fanleaf Virus
 pdb|2YI3|I Chain I, Grapevine Fanleaf Virus
 pdb|2YI3|J Chain J, Grapevine Fanleaf Virus
 pdb|2YI3|K Chain K, Grapevine Fanleaf Virus
 pdb|2YI3|L Chain L, Grapevine Fanleaf Virus
 pdb|2YI3|M Chain M, Grapevine Fanleaf Virus
 pdb|2YI3|N Chain N, Grapevine Fanleaf Virus
 pdb|2YI3|O Chain O, Grapevine Fanleaf Virus
 pdb|2YI3|P Chain P, Grapevine Fanleaf Virus
 pdb|2YI3|Q Chain Q, Grapevine Fanleaf Virus
 pdb|2YI3|R Chain R, Grapevine Fanleaf Virus
 pdb|2YI3|S Chain S, Grapevine Fanleaf Virus
 pdb|2YI3|T Chain T, Grapevine Fanleaf Virus
 pdb|2YI4|A Chain A, Grapevine Fanleaf Virus
 pdb|2YI4|B Chain B, Grapevine Fanleaf Virus
 pdb|2YI4|C Chain C, Grapevine Fanleaf Virus
 pdb|2YI4|D Chain D, Grapevine Fanleaf Virus
 pdb|2YI4|E Chain E, Grapevine Fanleaf Virus
 pdb|2YI4|F Chain F, Grapevine Fanleaf Virus
 pdb|2YI4|G Chain G, Grapevine Fanleaf Virus
 pdb|2YI4|H Chain H, Grapevine Fanleaf Virus
 pdb|2YI4|I Chain I, Grapevine Fanleaf Virus
 pdb|2YI4|J Chain J, Grapevine Fanleaf Virus
 pdb|2YI4|K Chain K, Grapevine Fanleaf Virus
 pdb|2YI4|L Chain L, Grapevine Fanleaf Virus
 pdb|2YI4|M Chain M, Grapevine Fanleaf Virus
 pdb|2YI4|N Chain N, Grapevine Fanleaf Virus
 pdb|2YI4|O Chain O, Grapevine Fanleaf Virus
 pdb|2YI4|P Chain P, Grapevine Fanleaf Virus
 pdb|2YI4|Q Chain Q, Grapevine Fanleaf Virus
 pdb|2YI4|R Chain R, Grapevine Fanleaf Virus
 pdb|2YI4|S Chain S, Grapevine Fanleaf Virus
 pdb|2YI4|T Chain T, Grapevine Fanleaf Virus
          Length = 504

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 35  MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTA------LTAVTQLAHHG 88
           +AA  +A  +   EL  + +  GKP  +F    F+G  Q LT       LTAVT L   G
Sbjct: 142 LAADWQAVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAG 201

Query: 89  MLF--VPL 94
           +    VP+
Sbjct: 202 LTLGQVPM 209


>pdb|2Y26|A Chain A, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|B Chain B, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|C Chain C, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|D Chain D, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|E Chain E, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|F Chain F, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|G Chain G, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|H Chain H, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|I Chain I, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|J Chain J, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|K Chain K, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|L Chain L, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|M Chain M, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|N Chain N, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|O Chain O, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|P Chain P, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|Q Chain Q, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|R Chain R, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|S Chain S, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|T Chain T, Transmission Defective Mutant Of Grapevine Fanleaf Virus
          Length = 504

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 35  MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTA------LTAVTQLAHHG 88
           +AA  +A  +   EL  + +  GKP  +F    F+G  Q LT       LTAVT L   G
Sbjct: 142 LAADWQAVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAG 201

Query: 89  MLF--VPL 94
           +    VP+
Sbjct: 202 LTLGQVPM 209


>pdb|1P4W|A Chain A, Solution Structure Of The Dna-Binding Domain Of The
           Erwinia Amylovora Rcsb Protein
          Length = 99

 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 122 DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 151
           D    P + E+ + F +G  V EIAKKL R
Sbjct: 32  DKRLSPKESEVLRLFAEGFLVTEIAKKLNR 61


>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
 pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
          Length = 582

 Score = 26.6 bits (57), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 75  LTALTAVTQLAHHGM-----LF--VPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQP 127
           L ALT+VT     GM     LF  + L     +G +E   V G       TF   G  +P
Sbjct: 298 LKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP 357

Query: 128 TDLELQQAFHQGKYVAEIAK 147
               +  +  QGK VA + +
Sbjct: 358 ALSHVSFSIPQGKTVALVGR 377


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,160,035
Number of Sequences: 62578
Number of extensions: 217738
Number of successful extensions: 392
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 15
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)