Query 031886
Match_columns 151
No_of_seqs 145 out of 1685
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3135 1,4-benzoquinone reduc 100.0 2.2E-32 4.7E-37 197.1 13.7 151 1-151 50-202 (203)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 1.7E-28 3.7E-33 184.9 15.8 141 8-149 56-197 (197)
3 PRK03767 NAD(P)H:quinone oxido 100.0 3.7E-28 7.9E-33 183.3 16.2 137 14-151 63-200 (200)
4 COG0655 WrbA Multimeric flavod 99.9 4.1E-22 8.9E-27 151.0 12.9 141 9-150 65-206 (207)
5 PRK05569 flavodoxin; Provision 99.7 4.9E-16 1.1E-20 110.7 11.4 102 9-143 37-140 (141)
6 PRK06242 flavodoxin; Provision 99.7 2.7E-16 5.7E-21 113.0 9.9 111 15-145 38-149 (150)
7 PRK05568 flavodoxin; Provision 99.7 1.8E-15 3.9E-20 107.8 11.6 103 9-144 37-141 (142)
8 PF03358 FMN_red: NADPH-depend 99.6 2.9E-16 6.2E-21 113.0 6.6 85 8-95 59-143 (152)
9 PRK06756 flavodoxin; Provision 99.6 4.8E-15 1E-19 106.6 11.5 102 15-145 44-146 (148)
10 PRK11921 metallo-beta-lactamas 99.6 3.2E-15 7E-20 123.1 10.9 98 16-146 296-393 (394)
11 TIGR01753 flav_short flavodoxi 99.6 7.2E-15 1.6E-19 103.9 11.1 105 9-143 34-140 (140)
12 PRK05452 anaerobic nitric oxid 99.6 6E-15 1.3E-19 124.3 11.6 106 8-147 288-397 (479)
13 TIGR03566 FMN_reduc_MsuE FMN r 99.6 1.2E-14 2.5E-19 107.4 8.2 110 15-147 63-172 (174)
14 PRK06703 flavodoxin; Provision 99.6 7.6E-14 1.6E-18 100.6 11.4 112 9-149 37-150 (151)
15 PRK10569 NAD(P)H-dependent FMN 99.5 1.1E-13 2.5E-18 103.8 11.0 113 15-148 61-174 (191)
16 PRK07308 flavodoxin; Validated 99.5 1.3E-13 2.8E-18 99.0 10.7 109 8-145 36-145 (146)
17 TIGR03567 FMN_reduc_SsuE FMN r 99.5 2.4E-13 5.3E-18 100.1 9.7 110 15-144 60-170 (171)
18 TIGR02690 resist_ArsH arsenica 99.4 1.6E-12 3.5E-17 99.4 11.3 118 15-149 85-203 (219)
19 COG0426 FpaA Uncharacterized f 99.4 4E-13 8.6E-18 109.6 8.4 102 9-144 287-388 (388)
20 PRK00170 azoreductase; Reviewe 99.4 5.4E-13 1.2E-17 100.1 6.7 79 15-93 81-170 (201)
21 PRK09267 flavodoxin FldA; Vali 99.4 2.2E-11 4.7E-16 89.3 12.3 127 9-144 35-165 (169)
22 PRK01355 azoreductase; Reviewe 99.3 1.5E-11 3.3E-16 92.7 8.6 84 9-93 67-164 (199)
23 PRK13556 azoreductase; Provisi 99.3 4E-11 8.7E-16 90.9 9.7 79 15-93 84-176 (208)
24 PRK09739 hypothetical protein; 99.3 8.3E-12 1.8E-16 94.0 5.4 55 15-69 74-132 (199)
25 COG0431 Predicted flavoprotein 99.2 4.5E-11 9.8E-16 89.2 8.1 76 15-95 62-137 (184)
26 PRK13555 azoreductase; Provisi 99.1 5.3E-10 1.1E-14 85.0 10.4 56 15-70 84-148 (208)
27 PRK12359 flavodoxin FldB; Prov 99.1 2E-09 4.4E-14 79.6 13.1 105 8-116 33-142 (172)
28 TIGR01752 flav_long flavodoxin 99.1 8.2E-10 1.8E-14 81.1 10.0 89 9-101 33-124 (167)
29 PF02525 Flavodoxin_2: Flavodo 99.1 5.3E-10 1.2E-14 83.9 8.9 80 15-94 73-173 (199)
30 PRK04930 glutathione-regulated 99.0 4.1E-09 8.9E-14 78.7 9.6 80 15-94 56-150 (184)
31 COG1182 AcpD Acyl carrier prot 99.0 4E-09 8.7E-14 79.1 8.7 76 15-90 82-170 (202)
32 PRK00871 glutathione-regulated 98.9 6.5E-09 1.4E-13 77.2 8.6 109 15-146 50-171 (176)
33 KOG4530 Predicted flavoprotein 98.9 1E-08 2.3E-13 74.1 8.9 68 15-90 81-148 (199)
34 PRK09271 flavodoxin; Provision 98.9 1.9E-08 4.1E-13 73.3 9.3 99 15-147 46-148 (160)
35 PRK06934 flavodoxin; Provision 98.8 7.7E-09 1.7E-13 79.2 6.3 61 15-84 124-184 (221)
36 PRK07116 flavodoxin; Provision 98.7 4.6E-08 9.9E-13 71.3 7.2 49 15-70 71-119 (160)
37 PF12682 Flavodoxin_4: Flavodo 98.7 2.4E-08 5.1E-13 72.8 5.0 61 15-84 68-128 (156)
38 PF12724 Flavodoxin_5: Flavodo 98.6 8.2E-08 1.8E-12 68.7 5.5 50 15-69 38-87 (143)
39 TIGR01754 flav_RNR ribonucleot 98.6 3.7E-07 8.1E-12 65.0 8.7 63 16-85 46-111 (140)
40 PRK11104 hemG protoporphyrinog 98.5 1.8E-07 3.8E-12 69.4 4.6 48 15-67 41-88 (177)
41 COG2249 MdaB Putative NADPH-qu 98.4 1.2E-06 2.7E-11 65.7 8.2 55 15-69 62-125 (189)
42 PRK09004 FMN-binding protein M 98.4 5.5E-06 1.2E-10 59.6 9.7 79 14-94 40-119 (146)
43 PF00258 Flavodoxin_1: Flavodo 98.3 1.6E-06 3.4E-11 61.4 6.3 88 8-95 31-125 (143)
44 PF12641 Flavodoxin_3: Flavodo 98.3 2.3E-06 5.1E-11 62.6 6.2 43 18-69 37-79 (160)
45 COG0716 FldA Flavodoxins [Ener 98.0 0.00011 2.3E-09 53.0 9.4 102 17-144 45-149 (151)
46 PRK08105 flavodoxin; Provision 97.9 0.00017 3.6E-09 52.1 9.1 74 19-94 47-121 (149)
47 PRK05723 flavodoxin; Provision 97.4 0.0034 7.3E-08 45.4 10.5 81 13-94 38-122 (151)
48 TIGR01931 cysJ sulfite reducta 97.1 0.0048 1E-07 53.9 10.0 88 5-93 90-178 (597)
49 PRK10953 cysJ sulfite reductas 97.1 0.0052 1.1E-07 53.7 10.2 87 6-93 94-181 (600)
50 COG4635 HemG Flavodoxin [Energ 97.0 0.00079 1.7E-08 49.1 3.2 45 17-66 44-88 (175)
51 PRK03600 nrdI ribonucleotide r 96.7 0.015 3.3E-07 41.3 8.1 86 17-142 35-128 (134)
52 TIGR00333 nrdI ribonucleoside- 96.4 0.062 1.3E-06 37.7 9.5 39 17-66 33-72 (125)
53 PRK02551 flavoprotein NrdI; Pr 79.2 20 0.00044 26.0 7.9 41 18-65 51-102 (154)
54 PRK15438 erythronate-4-phospha 67.9 24 0.00053 29.3 6.8 75 10-93 69-144 (378)
55 PRK10834 vancomycin high tempe 65.6 17 0.00037 28.4 5.1 70 15-89 39-111 (239)
56 PRK00961 H(2)-dependent methyl 65.1 42 0.0009 27.2 7.2 102 14-146 135-238 (342)
57 PRK00257 erythronate-4-phospha 64.6 27 0.00058 29.1 6.4 75 10-93 69-144 (381)
58 KOG1159 NADP-dependent flavopr 64.3 21 0.00046 30.9 5.7 84 9-92 36-121 (574)
59 COG1780 NrdI Protein involved 63.8 51 0.0011 23.6 7.2 41 18-65 37-82 (141)
60 PF01210 NAD_Gly3P_dh_N: NAD-d 63.0 15 0.00032 26.2 4.2 66 16-92 65-130 (157)
61 PF13344 Hydrolase_6: Haloacid 59.8 9.2 0.0002 25.3 2.4 57 19-92 3-59 (101)
62 COG0386 BtuE Glutathione perox 52.8 77 0.0017 23.2 6.3 43 54-97 22-66 (162)
63 PF07972 Flavodoxin_NdrI: NrdI 49.6 18 0.0004 25.2 2.6 28 18-45 35-67 (122)
64 TIGR01723 hmd_TIGR 5,10-methen 48.6 1.1E+02 0.0024 24.8 7.1 102 14-146 133-236 (340)
65 PRK08410 2-hydroxyacid dehydro 47.7 95 0.0021 24.9 6.9 76 10-93 74-173 (311)
66 COG0078 ArgF Ornithine carbamo 47.5 1.5E+02 0.0033 24.1 8.1 82 27-141 121-204 (310)
67 PRK05928 hemD uroporphyrinogen 46.9 29 0.00064 25.9 3.7 42 15-64 47-88 (249)
68 COG1587 HemD Uroporphyrinogen- 46.7 28 0.0006 26.8 3.6 43 15-65 45-87 (248)
69 PF06554 Olfactory_mark: Olfac 45.9 23 0.00049 25.2 2.6 17 132-148 108-124 (151)
70 PF02662 FlpD: Methyl-viologen 45.9 98 0.0021 21.3 6.4 72 15-87 46-123 (124)
71 PF00919 UPF0004: Uncharacteri 44.8 50 0.0011 21.8 4.1 33 16-48 32-64 (98)
72 PF02153 PDH: Prephenate dehyd 44.6 1.3E+02 0.0028 23.2 7.1 62 15-93 40-101 (258)
73 COG4074 Mth H2-forming N5,N10- 44.5 1.6E+02 0.0034 23.2 7.5 31 15-46 134-164 (343)
74 COG1445 FrwB Phosphotransferas 43.6 23 0.00049 24.8 2.3 20 11-30 47-66 (122)
75 PRK14818 NADH dehydrogenase su 43.6 61 0.0013 24.1 4.7 45 16-69 66-110 (173)
76 COG3260 Ni,Fe-hydrogenase III 43.0 73 0.0016 22.9 4.8 42 19-69 48-89 (148)
77 COG0061 nadF NAD kinase [Coenz 43.0 14 0.0003 29.3 1.3 12 19-30 164-175 (281)
78 PRK05752 uroporphyrinogen-III 42.9 40 0.00087 25.9 3.9 27 15-48 50-76 (255)
79 PRK14820 NADH dehydrogenase su 42.0 46 0.001 24.9 3.9 46 17-71 70-115 (180)
80 PRK00865 glutamate racemase; P 41.6 1.4E+02 0.003 23.2 6.8 61 56-143 4-64 (261)
81 PRK14817 NADH dehydrogenase su 41.5 38 0.00083 25.3 3.4 46 16-70 71-116 (181)
82 PRK14814 NADH dehydrogenase su 40.8 62 0.0013 24.3 4.4 45 17-70 70-114 (186)
83 PF11382 DUF3186: Protein of u 40.1 1E+02 0.0022 24.8 5.9 49 41-93 67-115 (308)
84 PRK14815 NADH dehydrogenase su 39.7 73 0.0016 23.9 4.6 45 18-71 71-115 (183)
85 PRK08811 uroporphyrinogen-III 39.7 30 0.00066 27.1 2.8 39 15-64 64-102 (266)
86 PF01935 DUF87: Domain of unkn 39.5 44 0.00096 25.0 3.6 36 54-92 20-56 (229)
87 PRK14077 pnk inorganic polypho 38.3 18 0.00039 28.9 1.3 12 19-30 175-186 (287)
88 CHL00023 ndhK NADH dehydrogena 38.3 78 0.0017 24.5 4.7 44 17-69 68-111 (225)
89 cd06578 HemD Uroporphyrinogen- 38.3 58 0.0012 24.0 4.1 42 15-64 44-85 (239)
90 TIGR03709 PPK2_rel_1 polyphosp 38.1 1.2E+02 0.0027 23.9 6.0 39 57-95 53-91 (264)
91 KOG0057 Mitochondrial Fe/S clu 37.0 91 0.002 27.6 5.4 37 54-93 375-411 (591)
92 PRK01185 ppnK inorganic polyph 36.7 17 0.00037 28.8 0.9 12 19-30 156-167 (271)
93 KOG2728 Uncharacterized conser 36.6 58 0.0013 25.9 3.8 34 28-67 7-40 (302)
94 PRK02649 ppnK inorganic polyph 36.4 20 0.00042 29.0 1.3 12 19-30 179-190 (305)
95 cd06259 YdcF-like YdcF-like. Y 36.3 1.3E+02 0.0028 20.8 5.4 62 23-88 3-64 (150)
96 PRK07168 bifunctional uroporph 36.2 30 0.00066 29.6 2.5 44 13-64 293-337 (474)
97 PRK01911 ppnK inorganic polyph 36.0 17 0.00037 29.1 0.9 12 19-30 174-185 (292)
98 PRK03372 ppnK inorganic polyph 36.0 20 0.00044 28.9 1.3 12 19-30 183-194 (306)
99 cd03140 GATase1_PfpI_3 Type 1 35.1 66 0.0014 22.9 3.8 44 15-65 53-99 (170)
100 PRK14813 NADH dehydrogenase su 34.7 84 0.0018 23.7 4.3 44 19-71 66-109 (189)
101 PRK03501 ppnK inorganic polyph 34.7 22 0.00048 28.0 1.3 12 19-30 147-158 (264)
102 PRK04885 ppnK inorganic polyph 34.7 23 0.00049 28.0 1.3 12 19-30 146-157 (265)
103 PRK02645 ppnK inorganic polyph 34.4 22 0.00049 28.5 1.3 20 19-38 177-200 (305)
104 PRK00561 ppnK inorganic polyph 34.4 21 0.00046 28.1 1.2 12 19-30 135-146 (259)
105 PRK06487 glycerate dehydrogena 34.4 1.8E+02 0.004 23.3 6.6 76 10-93 77-176 (317)
106 PRK04539 ppnK inorganic polyph 33.9 23 0.00049 28.4 1.3 11 20-30 180-190 (296)
107 PRK14075 pnk inorganic polypho 33.9 24 0.00051 27.6 1.3 12 19-30 144-155 (256)
108 PRK02231 ppnK inorganic polyph 33.8 23 0.00051 28.0 1.3 11 20-30 155-165 (272)
109 PRK06932 glycerate dehydrogena 33.7 1.8E+02 0.0039 23.3 6.5 76 10-93 76-175 (314)
110 PRK01231 ppnK inorganic polyph 33.4 23 0.0005 28.3 1.2 12 19-30 173-184 (295)
111 PRK10017 colanic acid biosynth 33.0 60 0.0013 27.4 3.7 46 15-66 112-157 (426)
112 PRK06975 bifunctional uroporph 33.0 64 0.0014 28.9 4.0 39 15-64 50-88 (656)
113 PRK06411 NADH dehydrogenase su 32.7 72 0.0016 23.9 3.7 45 18-71 72-116 (183)
114 COG0796 MurI Glutamate racemas 32.7 2.3E+02 0.005 22.5 6.7 62 56-144 4-65 (269)
115 COG0391 Uncharacterized conser 32.6 24 0.00053 28.7 1.3 32 4-36 174-205 (323)
116 PRK03708 ppnK inorganic polyph 32.5 25 0.00055 27.8 1.3 20 19-38 163-186 (277)
117 PRK04761 ppnK inorganic polyph 31.8 27 0.00058 27.3 1.3 19 20-38 133-155 (246)
118 PRK02155 ppnK NAD(+)/NADH kina 31.8 25 0.00055 28.0 1.2 21 19-39 174-198 (291)
119 KOG0068 D-3-phosphoglycerate d 31.5 2.4E+02 0.0052 23.6 6.7 77 10-94 81-175 (406)
120 TIGR01768 GGGP-family geranylg 31.5 2.4E+02 0.0053 21.7 8.8 31 15-47 20-52 (223)
121 PRK15409 bifunctional glyoxyla 31.1 2.3E+02 0.0049 22.9 6.6 76 10-93 77-174 (323)
122 TIGR01724 hmd_rel H2-forming N 31.0 3.1E+02 0.0066 22.7 8.2 24 123-146 166-189 (341)
123 PRK14816 NADH dehydrogenase su 31.0 1.1E+02 0.0023 23.0 4.3 45 18-71 79-123 (182)
124 cd04161 Arl2l1_Arl13_like Arl2 30.9 1.5E+02 0.0032 20.8 5.1 47 16-65 62-108 (167)
125 cd01979 Pchlide_reductase_N Pc 30.9 2.5E+02 0.0054 23.2 7.0 67 20-92 118-184 (396)
126 cd00316 Oxidoreductase_nitroge 30.4 2.5E+02 0.0054 22.8 6.9 71 19-93 110-184 (399)
127 cd01971 Nitrogenase_VnfN_like 30.3 2.1E+02 0.0046 23.9 6.5 73 20-92 116-190 (427)
128 cd01965 Nitrogenase_MoFe_beta_ 29.8 2.7E+02 0.0058 23.2 7.1 70 20-93 116-187 (428)
129 PRK12439 NAD(P)H-dependent gly 29.5 2.2E+02 0.0048 22.9 6.4 27 16-48 73-99 (341)
130 PLN02928 oxidoreductase family 29.5 3.1E+02 0.0068 22.3 7.3 77 10-94 93-188 (347)
131 COG0111 SerA Phosphoglycerate 28.8 2.2E+02 0.0047 23.1 6.2 76 11-94 78-171 (324)
132 PRK14476 nitrogenase molybdenu 28.8 2.7E+02 0.0059 23.6 7.0 69 20-92 127-199 (455)
133 TIGR03707 PPK2_P_aer polyphosp 27.8 2.6E+02 0.0056 21.6 6.2 39 56-95 28-66 (230)
134 PF06230 DUF1009: Protein of u 27.6 2E+02 0.0044 22.0 5.4 23 72-94 50-72 (214)
135 PRK13143 hisH imidazole glycer 27.2 89 0.0019 23.2 3.5 15 15-29 33-47 (200)
136 KOG2178 Predicted sugar kinase 27.2 34 0.00074 28.7 1.2 13 18-30 283-295 (409)
137 cd01968 Nitrogenase_NifE_I Nit 27.0 3.6E+02 0.0077 22.3 7.3 79 8-92 103-188 (410)
138 smart00175 RAB Rab subfamily o 26.8 1.5E+02 0.0033 20.0 4.5 47 15-65 67-113 (164)
139 cd01866 Rab2 Rab2 subfamily. 26.4 2.3E+02 0.0049 19.7 5.6 75 15-93 71-145 (168)
140 PRK03378 ppnK inorganic polyph 26.0 37 0.0008 27.2 1.2 12 19-30 174-185 (292)
141 cd01977 Nitrogenase_VFe_alpha 26.0 2.9E+02 0.0063 22.9 6.6 67 21-92 121-192 (415)
142 TIGR03609 S_layer_CsaB polysac 26.0 1.5E+02 0.0033 23.0 4.8 50 15-66 59-108 (298)
143 smart00177 ARF ARF-like small 26.0 1.5E+02 0.0034 20.9 4.5 45 18-65 78-122 (175)
144 PRK11790 D-3-phosphoglycerate 25.9 2.5E+02 0.0055 23.4 6.2 77 10-94 86-180 (409)
145 TIGR02931 anfK_nitrog Fe-only 25.9 2.6E+02 0.0056 23.8 6.4 68 20-92 132-199 (461)
146 PF09314 DUF1972: Domain of un 25.7 1.5E+02 0.0033 22.1 4.4 32 59-90 3-36 (185)
147 TIGR01957 nuoB_fam NADH-quinon 25.6 1.1E+02 0.0024 22.0 3.5 43 19-70 56-98 (145)
148 cd01974 Nitrogenase_MoFe_beta 25.1 3.2E+02 0.0068 22.9 6.7 69 20-92 120-191 (435)
149 TIGR01282 nifD nitrogenase mol 24.9 1.5E+02 0.0032 25.3 4.7 36 53-96 331-366 (466)
150 PLN02935 Bifunctional NADH kin 24.8 37 0.0008 29.5 1.1 12 19-30 378-389 (508)
151 PLN00223 ADP-ribosylation fact 24.0 1.9E+02 0.004 20.8 4.6 45 18-65 82-126 (181)
152 PRK13306 ulaD 3-keto-L-gulonat 23.9 98 0.0021 23.4 3.2 32 16-47 178-212 (216)
153 TIGR01692 HIBADH 3-hydroxyisob 23.8 3.5E+02 0.0077 21.0 6.8 67 16-97 48-117 (288)
154 COG3494 Uncharacterized protei 23.7 2.3E+02 0.0049 22.6 5.1 23 73-95 108-130 (279)
155 TIGR01019 sucCoAalpha succinyl 23.1 3.9E+02 0.0085 21.3 8.4 65 15-96 55-122 (286)
156 PRK09393 ftrA transcriptional 23.0 1.2E+02 0.0027 24.0 3.8 44 15-65 70-114 (322)
157 cd04124 RabL2 RabL2 subfamily. 22.9 2E+02 0.0043 19.8 4.5 46 15-65 67-112 (161)
158 cd01973 Nitrogenase_VFe_beta_l 22.7 3.5E+02 0.0076 23.0 6.6 67 21-92 126-192 (454)
159 cd03141 GATase1_Hsp31_like Typ 22.7 1.6E+02 0.0034 22.2 4.1 30 18-47 88-120 (221)
160 COG3643 Glutamate formiminotra 22.6 1.1E+02 0.0024 24.2 3.2 21 126-146 99-119 (302)
161 TIGR02482 PFKA_ATP 6-phosphofr 22.6 4.1E+02 0.0089 21.3 7.9 22 126-147 256-277 (301)
162 PRK13305 sgbH 3-keto-L-gulonat 22.5 1.1E+02 0.0025 23.3 3.3 32 19-50 183-215 (218)
163 cd04101 RabL4 RabL4 (Rab-like4 22.5 1.9E+02 0.0041 19.7 4.3 46 16-66 71-116 (164)
164 PF01933 UPF0052: Uncharacteri 22.4 55 0.0012 26.3 1.6 30 9-39 173-202 (300)
165 PRK02842 light-independent pro 22.1 4.3E+02 0.0094 22.1 7.0 67 20-92 129-195 (427)
166 PLN02929 NADH kinase 21.9 47 0.001 26.8 1.1 12 19-30 194-205 (301)
167 KOG2711 Glycerol-3-phosphate d 21.8 61 0.0013 26.9 1.7 38 4-48 90-127 (372)
168 TIGR01819 F420_cofD LPPG:FO 2- 21.8 50 0.0011 26.6 1.2 28 10-38 173-200 (297)
169 cd04158 ARD1 ARD1 subfamily. 21.7 2E+02 0.0044 20.0 4.4 47 16-65 62-108 (169)
170 COG0377 NuoB NADH:ubiquinone o 21.4 2.6E+02 0.0056 21.1 4.8 52 10-70 65-116 (194)
171 PF05673 DUF815: Protein of un 21.4 3.6E+02 0.0078 21.2 5.9 57 33-94 30-86 (249)
172 TIGR01383 not_thiJ DJ-1 family 21.3 1.2E+02 0.0026 21.5 3.1 44 15-65 56-104 (179)
173 TIGR01861 ANFD nitrogenase iro 21.2 4E+02 0.0087 23.2 6.7 69 20-93 160-233 (513)
174 smart00178 SAR Sar1p-like memb 21.2 1.9E+02 0.004 20.7 4.1 46 17-65 81-126 (184)
175 cd01867 Rab8_Rab10_Rab13_like 21.0 1.5E+02 0.0034 20.5 3.6 47 15-65 70-116 (167)
176 cd01862 Rab7 Rab7 subfamily. 20.8 1.7E+02 0.0038 20.0 3.8 51 15-65 67-117 (172)
177 PRK13243 glyoxylate reductase; 20.7 4.6E+02 0.0099 21.2 6.8 76 10-93 78-178 (333)
178 cd03466 Nitrogenase_NifN_2 Nit 20.6 4E+02 0.0086 22.3 6.4 68 20-92 118-185 (429)
179 PRK12480 D-lactate dehydrogena 20.5 3.9E+02 0.0084 21.6 6.2 76 10-93 80-174 (330)
180 cd00877 Ran Ran (Ras-related n 20.5 3.1E+02 0.0066 19.1 5.2 46 15-65 67-112 (166)
181 PRK03958 tRNA 2'-O-methylase; 20.3 1.4E+02 0.0031 22.2 3.3 32 15-47 117-148 (176)
No 1
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=197.07 Aligned_cols=151 Identities=72% Similarity=1.149 Sum_probs=144.7
Q ss_pred CCCCCCCCCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHH
Q 031886 1 MKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTA 80 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~ 80 (151)
|+||||+.|+|+++.+.+.++|+.+||-||.||++++++|+|+|+...+|....|.||++++|.|.|+.+|+++.+..+-
T Consensus 50 m~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta 129 (203)
T KOG3135|consen 50 MKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTA 129 (203)
T ss_pred hcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHhcCcEEecCCCC-CCCCCccccccccccccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 031886 81 VTQLAHHGMLFVPLGYT-FGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 151 (151)
Q Consensus 81 ~~~l~~~g~~~v~~g~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~p~e~~l~~a~~lG~~la~~~~~l~~ 151 (151)
...|.+|||++|+.||. ....+.+++++++|++||++++++ |+.+.|++.+++.++-.|+-+++.+++|++
T Consensus 130 ~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 130 ITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred HHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 99999999999999999 566778899999999999999999 999999999999999999999999999874
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.96 E-value=1.7e-28 Score=184.90 Aligned_cols=141 Identities=50% Similarity=0.777 Sum_probs=124.0
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
.+.+.++.+++.+||+||||||+|+++++++||+|+|++..+|....+.||++++|+++||.+|+.+.++..+...+.++
T Consensus 56 ~~~~~~~~~~l~~aD~ii~GSPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~ 135 (197)
T TIGR01755 56 QTAPVATPQELADYDAIIFGTPTRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHH 135 (197)
T ss_pred cCCccCCHHHHHHCCEEEEEecccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 44555667899999999999999999999999999999998887678999999999999988889999999999999999
Q ss_pred CcEEecCCCCCCCCCccccccccccccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 88 GMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 88 g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
||++++.+|.. ....+.+.+++|++||+.++.+ +....|++.|++.|+.+|+|+|+++++|
T Consensus 136 Gm~vv~~~~~~-~~~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 136 GMIIVPLPYAA-QEQMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCEEeCCCccc-ccccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999987753 2224456678899999999986 5567899999999999999999999986
No 3
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.96 E-value=3.7e-28 Score=183.30 Aligned_cols=137 Identities=51% Similarity=0.787 Sum_probs=121.9
Q ss_pred ChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 14 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.++++.+||+||||||||++++++++|+|+|++..+|....+.||++++|+++||.+|+.+.++.++...+..+||.+++
T Consensus 63 ~~~~l~~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 63 TPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred CHHHHHhCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeC
Confidence 38999999999999999999999999999999998887678999999999999988889999999999999999999999
Q ss_pred CCCCCCCCCccccccccccccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 151 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~p~e~~l~~a~~lG~~la~~~~~l~~ 151 (151)
.++... .+...+.++.|++||+.+..+ +....|+++|++.|+.+|+|+|+++++|++
T Consensus 143 ~~~~~~-~~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 143 LPYAFQ-GQMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCCccc-cccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 877642 223345677899999999886 556789999999999999999999999975
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.88 E-value=4.1e-22 Score=151.04 Aligned_cols=141 Identities=45% Similarity=0.614 Sum_probs=115.5
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHH-hhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDA-TYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDr-l~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
+++++ .+++.+||+|||||||||+++|++||+|||| +..+|....+.||+++.|++.+..+|+++.++..+...+.++
T Consensus 65 ~~~~i-~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~ 143 (207)
T COG0655 65 DMNEI-YEKLLEADGIIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHH 143 (207)
T ss_pred cHHHH-HHHHHHCCEEEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHc
Confidence 35566 8889999999999999999999999999999 777887778999999999999888888888999999999999
Q ss_pred CcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 88 GMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 88 g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
+|.+++.++.....-...+....|.++|+...+......+.+.+++.++.+++++++.+.++.
T Consensus 144 ~~~~v~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 144 GMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred CCeEecccccccccCcccccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999877642210011246778888887776522223778889999999999998888775
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.69 E-value=4.9e-16 Score=110.72 Aligned_cols=102 Identities=23% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcch--HHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMA--AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~--~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
++.+.+..++.+||+||||||||+++++ ++++.|+|++... .++||++++|+++||..+. .+..+...+..
T Consensus 37 ~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~ 109 (141)
T PRK05569 37 HVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDNGE---FMKLWKDRMKD 109 (141)
T ss_pred ECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCCCc---HHHHHHHHHHH
Confidence 4455556799999999999999999864 6899999998643 5799999999999875433 35667777788
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 143 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la 143 (151)
.|+.+++. +.. .+.|+++++++|+++|++|+
T Consensus 110 ~g~~~~~~-~~~-------------------------~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 110 YGFNVIGD-LAV-------------------------NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred CCCeEeee-EEE-------------------------ccCCCHHHHHHHHHHHHHHh
Confidence 89988863 211 14699999999999999986
No 6
>PRK06242 flavodoxin; Provisional
Probab=99.68 E-value=2.7e-16 Score=113.00 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=83.2
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
..++.++|.||||||+|++++++.++.|+|++. .++||++++|+++|+..++. ...+...+...|+.+++.
T Consensus 38 ~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 38 PEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred cccHhHCCEEEEeCchhcCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999999984 35899999999998765443 577888888999999874
Q ss_pred CCCCCCCCccccccccccccccceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
- .. .+...++.....+ .....|+++++++|+++|++++++
T Consensus 109 ~-~~----------~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 109 F-SC----------KGFDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred E-ec----------CCcccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 1 11 1111122211111 123579999999999999999754
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.66 E-value=1.8e-15 Score=107.80 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=82.2
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcch--HHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMA--AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~--~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
++.+....++.++|+||||||||+++++ +.++.|++++.. .++||++++|+++||..+. ....+...+..
T Consensus 37 ~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~~~---~~~~~~~~l~~ 108 (142)
T PRK05568 37 NVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGDGE---WMRDWVERMEG 108 (142)
T ss_pred ECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCCCh---HHHHHHHHHHH
Confidence 3444556789999999999999999984 689999999853 4799999999998764333 35667777788
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
.|+.+++.++.. ...|+++++++|+++|+.|++
T Consensus 109 ~g~~~~~~~~~~-------------------------~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 109 YGANLVNEGLIV-------------------------NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred CCCEEeCCcEEE-------------------------ecCCCHHHHHHHHHHHHHHHh
Confidence 999999765432 145999999999999999974
No 8
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.65 E-value=2.9e-16 Score=112.96 Aligned_cols=85 Identities=35% Similarity=0.482 Sum_probs=70.8
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
+++.++ .+++.+||+|||+||+|++++++.||+||||+.. +....++||++++++++|+.. +...+..++...+..+
T Consensus 59 d~~~~~-~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~-g~~~~~~~l~~~~~~~ 135 (152)
T PF03358_consen 59 DDVQEL-YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRR-GGLRALEQLRQILDYL 135 (152)
T ss_dssp HHHHHH-HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSS-TTHHHHHHHHHHHHHT
T ss_pred HHHHHH-HhceecCCeEEEeecEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCc-HHHHHHHHHHHHHHHC
Confidence 445555 8999999999999999999999999999999975 344689999999998876643 4455778999999999
Q ss_pred CcEEecCC
Q 031886 88 GMLFVPLG 95 (151)
Q Consensus 88 g~~~v~~g 95 (151)
||.+++.+
T Consensus 136 ~~~~~~~~ 143 (152)
T PF03358_consen 136 GMIVVPSG 143 (152)
T ss_dssp TBEEECCS
T ss_pred CCEEcCCc
Confidence 99999874
No 9
>PRK06756 flavodoxin; Provisional
Probab=99.63 E-value=4.8e-15 Score=106.57 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=84.9
Q ss_pred hHHHhhCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..++.++|+||||||||. +.++..++.|++.+... .++||++++|+++++..++....+..+...+...|+.+++
T Consensus 44 ~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 44 ASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSI----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcC----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC
Confidence 568899999999999996 66777899999998643 7899999999997654344556788999999999999998
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
.+..+ ...|+++++++|+++|++|++.
T Consensus 120 ~~~~~-------------------------~~~p~~~d~~~~~~~~~~~~~~ 146 (148)
T PRK06756 120 EGLKV-------------------------ELTPEDEDVEKCLQFGAEFVKH 146 (148)
T ss_pred CCeEE-------------------------ecCCCHHHHHHHHHHHHHHHHh
Confidence 65432 2579999999999999999874
No 10
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.62 E-value=3.2e-15 Score=123.13 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=82.2
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCC
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 95 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g 95 (151)
+++.+||+||||||||++++.+.|+.|++.+..+ .++||++++|||+||. |+ ....+.+.+...|+.+++.+
T Consensus 296 ~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~----~~~~K~~a~FGsygw~-g~---a~~~~~~~l~~~g~~~v~~~ 367 (394)
T PRK11921 296 TEVFKSKAILVGSSTINRGILSSTAAILEEIKGL----GFKNKKAAAFGSYGWS-GE---SVKIITERLKKAGFEIVNDG 367 (394)
T ss_pred HHHHhCCEEEEECCCcCccccHHHHHHHHHhhcc----CcCCCEEEEEecCCCc-cH---HHHHHHHHHHHCCCEEccCc
Confidence 3456899999999999999999999999998764 7899999999999874 33 35778888889999999766
Q ss_pred CCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 96 YTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
+.. ...|+++++++|+++|++|++.+
T Consensus 368 ~~~-------------------------~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 368 IRE-------------------------LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred EEE-------------------------EeCCCHHHHHHHHHHHHHHHHhh
Confidence 543 14589999999999999998754
No 11
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.62 E-value=7.2e-15 Score=103.91 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=83.8
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCc-ch-HHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGV-MA-AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~-~~-~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
++.+...+++.++|.||||||||+.+ ++ +.++.|++++... .++||++++|+++|+... .......+...+..
T Consensus 34 ~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~ 108 (140)
T TIGR01753 34 EVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKE 108 (140)
T ss_pred EcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHH
Confidence 44455577899999999999999865 65 7999999998642 589999999999866432 34567888888889
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 143 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la 143 (151)
.|+.++..++.. ...|+++++++|+++|++|+
T Consensus 109 ~g~~~v~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 109 AGATIIAEGLKV-------------------------DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred CCCEEecCCeee-------------------------ecCCCHHHHHHHHHHHHHhC
Confidence 999999765332 14699999999999999874
No 12
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.61 E-value=6e-15 Score=124.32 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=85.4
Q ss_pred CCCCCCChHHH----hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHH
Q 031886 8 NDVPVIRPHQL----KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQ 83 (151)
Q Consensus 8 ~~~~~~~~~~l----~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~ 83 (151)
.++.+.+.+++ .+||+||||||||++++.++|+.|++.+... .++||++++|||+||. |++ ...+...
T Consensus 288 ~~v~~~~~~~i~~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~~~----~l~gK~~~vFGSygw~-g~a---~~~~~~~ 359 (479)
T PRK05452 288 FNVARSDKNEILTNVFRSKGVLVGSSTMNNVMMPKIAGLLEEITGL----RFRNKRASAFGSHGWS-GGA---VDRLSTR 359 (479)
T ss_pred EECCCCCHHHHHhHHhhCCEEEEECCccCCcchHHHHHHHHHhhcc----CcCCCEEEEEECCCcC-cHH---HHHHHHH
Confidence 34455555554 4699999999999999999999999999764 6899999999999874 333 5678888
Q ss_pred HHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031886 84 LAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 84 l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~ 147 (151)
|...|+.++. ++.. ...|+++++++|+++|++|++.++
T Consensus 360 l~~~g~~~~~-~l~~-------------------------~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 360 LQDAGFEMSL-SLKA-------------------------KWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred HHHCCCEEec-cEEE-------------------------EecCCHHHHHHHHHHHHHHHHHHh
Confidence 8899999874 3321 256999999999999999997665
No 13
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.57 E-value=1.2e-14 Score=107.35 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=78.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||+|||+||+||+++|+++|+|||++.. ..|.||++++++++|+..+ .......+...+...++.+++.
T Consensus 63 ~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~~~ 137 (174)
T TIGR03566 63 LQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTLPT 137 (174)
T ss_pred HHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccccc
Confidence 7899999999999999999999999999999863 3699999999888655333 2223334555666777766653
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~ 147 (151)
.... ....+. ++ ...|++..++.+.+.+.+++.+.
T Consensus 138 ~~~~----------------~~~~~~-~g-~l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 138 GVYA----------------SDADFA-DY-RLASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred eEEE----------------Ehhhhc-cc-cccCHHHHHHHHHHHHHHHHHhc
Confidence 2111 001121 11 24678888999999999887654
No 14
>PRK06703 flavodoxin; Provisional
Probab=99.55 E-value=7.6e-14 Score=100.65 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=87.3
Q ss_pred CCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
++.+....++.++|.|||||||| .+.++..++.|++.+... .+++|++++|+++++..+........+...|...
T Consensus 37 ~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~ 112 (151)
T PRK06703 37 EMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVER 112 (151)
T ss_pred ehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHC
Confidence 33444456899999999999999 577888899999998643 6889999999997653232334567788889999
Q ss_pred CcEEecCCCCCCCCCccccccccccccccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 031886 88 GMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPT-DLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 88 g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~-e~~l~~a~~lG~~la~~~~~l 149 (151)
|+.+++..+.. ...|+ ++++++|+++|+++++.++++
T Consensus 113 G~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 113 GAELVQEGLKI-------------------------ELAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred CCEEcccCeEE-------------------------ecCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 99999765443 13565 799999999999999887654
No 15
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.53 E-value=1.1e-13 Score=103.83 Aligned_cols=113 Identities=17% Similarity=0.058 Sum_probs=82.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHH-HHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTA-LTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l-~~~~~~l~~~g~~~v~ 93 (151)
.++|.+||+|||+||+||+++|+.+|+|||++.. ..|+||++++++++|. .+ ....+ ..+...+..+++.+++
T Consensus 61 ~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~-~~-~~~~~~~~lr~~l~~l~a~~~~ 134 (191)
T PRK10569 61 TEQLAQADGLIVATPVYKASFSGALKTLLDLLPE----RALEHKVVLPLATGGS-VA-HMLAVDYALKPVLSALKAQEIL 134 (191)
T ss_pred HHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCC-ch-hHHHHHHHHHHHHHHcCCeecC
Confidence 7899999999999999999999999999999843 4699999999998644 33 33344 4666777888888876
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~ 148 (151)
.+..... .... .+ +.+...|++..++.+++.+.+++.++.
T Consensus 135 ~~~~~~~-----------~~~~--~~--d~~~~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 135 HGVFADD-----------SQVI--DY--HHQPQFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred ceEEEec-----------hhhh--cc--ccccccCHHHHHHHHHHHHHHHHHHcc
Confidence 6533210 0000 01 222345999999999999999876643
No 16
>PRK07308 flavodoxin; Validated
Probab=99.53 E-value=1.3e-13 Score=99.00 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=85.8
Q ss_pred CCCCCCChHHHhhCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
.++.+.+.+++.++|+||||||||. +.++..++.|++.+... .++||++++||++....++.......+...+..
T Consensus 36 ~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~ 111 (146)
T PRK07308 36 DECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADL----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFAL 111 (146)
T ss_pred EecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHH
Confidence 4445555678999999999999997 77888999999998753 689999999999533223444556788888888
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
.|+.++...+.+ ...|++++++.|+++|++|++.
T Consensus 112 ~g~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 112 TGATKGAESVKV-------------------------DLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred cCCeEccCcEEE-------------------------eCCCCHHHHHHHHHHHHHHHhh
Confidence 999988654432 2469999999999999999853
No 17
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.49 E-value=2.4e-13 Score=100.13 Aligned_cols=110 Identities=19% Similarity=0.089 Sum_probs=73.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHH-HHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTA-LTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l-~~~~~~l~~~g~~~v~ 93 (151)
.+++.+||+|||+||+||+++|+.+|+|||++.. ..+.||++++++++|.. ++ ...+ ..+...+..+|+.++.
T Consensus 60 ~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~~-~~-~~~~~~~l~~~l~~l~~~~~~ 133 (171)
T TIGR03567 60 TAQVAQADGVVVATPVYKASYSGVLKALLDLLPQ----RALRGKVVLPIATGGSI-AH-LLAIDYALKPVLSALGARHIL 133 (171)
T ss_pred HHHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCch-hH-HHHHHHHHHHHHHHcCCcccc
Confidence 7889999999999999999999999999999853 46999999988775432 22 2223 3466677778885444
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
.++..+ ... ..+++++....|++..++..+++++++.
T Consensus 134 ~~v~~~------------~~~--~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 134 PGVFAL------------DSQ--IERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred ceEEEE------------hhH--hccccCCccccCHHHHHHHHHHHHHHHh
Confidence 332211 000 0021122211577788888888888764
No 18
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.44 E-value=1.6e-12 Score=99.38 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=87.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh-hccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~-~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.+.+.+||++||+||.|++++++.+||+||.+...+. ...+.||++++++++|+.. ....+..+...+...++.+++
T Consensus 85 ~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 85 RQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred HHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCcccc
Confidence 5678999999999999999999999999999987543 1358999999988764422 456788899999999999997
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
....+.. . ...+++++ ...+++..+....+.+.+.+.++..
T Consensus 163 ~~v~i~~------------a--~~~fd~~G-~l~d~~~~~~l~~~l~~~~~~~~~~ 203 (219)
T TIGR02690 163 NQSSVAK------------A--FDEFDEAG-RMKPSDYYDRVVDVMEELTKFTLLT 203 (219)
T ss_pred chhhhhh------------h--HhhcCcCC-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6433311 1 11132222 2567777888888888888777654
No 19
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.44 E-value=4e-13 Score=109.58 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=85.2
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
+..++ .+++.+|++||+||||+++++++++..++-.+..+ ..++|.+++|+|+||. |++ ...+...+...|
T Consensus 287 ~~~eI-~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~----~~~~k~~~vfgS~GW~-g~a---v~~i~~~l~~~g 357 (388)
T COG0426 287 DPSEI-VEEILDAKGLVVGSPTINGGAHPPIQTALGYVLAL----APKNKLAGVFGSYGWS-GEA---VDLIEEKLKDLG 357 (388)
T ss_pred CHHHH-HHHHhhcceEEEecCcccCCCCchHHHHHHHHHhc----cCcCceEEEEeccCCC-Ccc---hHHHHHHHHhcC
Confidence 44555 88999999999999999999999999999998865 7899999999999875 444 467777778888
Q ss_pred cEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 89 MLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 89 ~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
+.+...++.+ ...|+++++++|+++|+.+|+
T Consensus 358 ~~~~~~~i~v-------------------------k~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 358 FEFGFDGIEV-------------------------KFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred cEEeccceEE-------------------------EecCCHHHHHHHHHHHHHhcC
Confidence 8888654332 257999999999999999874
No 20
>PRK00170 azoreductase; Reviewed
Probab=99.40 E-value=5.4e-13 Score=100.08 Aligned_cols=79 Identities=20% Similarity=0.111 Sum_probs=58.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh---------hccCCCCcEEEEEccCCCCcc--HHHHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA---------SQALAGKPAGIFWSTGFHGGG--QELTALTAVTQ 83 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~~g~--~~~~l~~~~~~ 83 (151)
.++|.+||+|||+||+||+++|+++|+||||+..... .+.++||++.+++++|+..++ .+.....+...
T Consensus 81 ~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK00170 81 LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTF 160 (201)
T ss_pred HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHH
Confidence 6889999999999999999999999999999864210 135899999999987653221 12334555566
Q ss_pred HHhcCcEEec
Q 031886 84 LAHHGMLFVP 93 (151)
Q Consensus 84 l~~~g~~~v~ 93 (151)
+...|+..+.
T Consensus 161 ~~~~G~~~~~ 170 (201)
T PRK00170 161 LGFIGITDVE 170 (201)
T ss_pred HHhcCCCceE
Confidence 6666776553
No 21
>PRK09267 flavodoxin FldA; Validated
Probab=99.35 E-value=2.2e-11 Score=89.34 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCCCCChHHHhhCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccH---HHHHHHHHHHH
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ---ELTALTAVTQL 84 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~---~~~l~~~~~~l 84 (151)
++.+....++.++|.||||||||+ +.++..++.|++++.. ..++||++++|++++.. +.. ...+..+.+.+
T Consensus 35 ~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~----~~l~~k~vaifg~g~~~-~~~~~~~~~~~~l~~~l 109 (169)
T PRK09267 35 DIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEE----IDFSGKKVALFGLGDQE-DYAEYFCDAMGTLYDIV 109 (169)
T ss_pred EhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEecCCCC-cchHHHHHHHHHHHHHH
Confidence 344455678999999999999996 8888999999998854 36899999999985432 222 34567888889
Q ss_pred HhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 85 AHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 85 ~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
...|+.+++.--..++.+....++..+.++|.. .+ ....++..+ ++.+++.+.|..
T Consensus 110 ~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~-~d--~~~~~~~td-~~i~~w~~~i~~ 165 (169)
T PRK09267 110 EPRGATIVGHWPTDGYTFEASKAVDDGKFVGLA-LD--EDNQSELTD-ERIEAWVKQIKP 165 (169)
T ss_pred HHCCCEEECccCCCCccccccceeeCCEEEEEE-ec--CCCchhhhH-HHHHHHHHHHHH
Confidence 999999998722223333333445567777775 32 223454555 677777776653
No 22
>PRK01355 azoreductase; Reviewed
Probab=99.29 E-value=1.5e-11 Score=92.67 Aligned_cols=84 Identities=17% Similarity=0.006 Sum_probs=60.7
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh--------h----hccCCCCcEEEEEccCCCCccH--H
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW--------A----SQALAGKPAGIFWSTGFHGGGQ--E 74 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~--------~----~~~l~gK~~~~f~s~g~~~g~~--~ 74 (151)
++..+ .+++.+||+|||+||+||+++|+++|+||||+.... . .+.++||.+.+++++|+..+.. .
T Consensus 67 ~~~~~-~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~ 145 (199)
T PRK01355 67 VSDKY-INQLKSVDKVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWG 145 (199)
T ss_pred hHHHH-HHHHHhCCEEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCcc
Confidence 33444 789999999999999999999999999999985421 0 1247899999999987543221 2
Q ss_pred HHHHHHHHHHHhcCcEEec
Q 031886 75 LTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 75 ~~l~~~~~~l~~~g~~~v~ 93 (151)
.....+...+...|+..+.
T Consensus 146 ~~~~~l~~~~~~~G~~~~~ 164 (199)
T PRK01355 146 SHTNYLEGTWEFLGAKVVD 164 (199)
T ss_pred chHHHHHHHHHhcCCCcee
Confidence 3345566666666776553
No 23
>PRK13556 azoreductase; Provisional
Probab=99.26 E-value=4e-11 Score=90.88 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh-----h----hccCCCCcEEEEEccCCCCc-----cHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-----A----SQALAGKPAGIFWSTGFHGG-----GQELTALTA 80 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~-----~----~~~l~gK~~~~f~s~g~~~g-----~~~~~l~~~ 80 (151)
.+++.+||.|||++|.||+++|+.+|+|||++.... . .+.++||++.+++++|+... ..+.....+
T Consensus 84 ~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l 163 (208)
T PRK13556 84 LNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYV 163 (208)
T ss_pred HHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHH
Confidence 688999999999999999999999999999997541 1 13589999999999876431 112234456
Q ss_pred HHHHHhcCcEEec
Q 031886 81 VTQLAHHGMLFVP 93 (151)
Q Consensus 81 ~~~l~~~g~~~v~ 93 (151)
...+...|+..++
T Consensus 164 ~~il~~~G~~~~~ 176 (208)
T PRK13556 164 ASMMGFFGVTNME 176 (208)
T ss_pred HHHHHhcCCCcee
Confidence 6666666766554
No 24
>PRK09739 hypothetical protein; Provisional
Probab=99.25 E-value=8.3e-12 Score=93.98 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=45.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh---h-hccCCCCcEEEEEccCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---A-SQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~---~-~~~l~gK~~~~f~s~g~~ 69 (151)
.+++.+||+|||++|+||+++|+.+|+|||++.... . ...+.||++.++.++|+.
T Consensus 74 ~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 74 YSELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred HHHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 789999999999999999999999999999985321 1 235889999888886654
No 25
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.23 E-value=4.5e-11 Score=89.18 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=66.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||++||+||+|++++++.+|+.||.+... .+.+|++++++++|+.. +.......+...+..++|..++.
T Consensus 62 ~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~~----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 62 REAIAAADGLIIATPEYNGSYPGALKNAIDWLSRE----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred HHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCHh----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 67899999999999999999999999999999863 69999999999977644 44556788888899999999987
Q ss_pred C
Q 031886 95 G 95 (151)
Q Consensus 95 g 95 (151)
+
T Consensus 137 ~ 137 (184)
T COG0431 137 G 137 (184)
T ss_pred c
Confidence 5
No 26
>PRK13555 azoreductase; Provisional
Probab=99.14 E-value=5.3e-10 Score=85.02 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=47.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh---------hhccCCCCcEEEEEccCCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---------ASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~~ 70 (151)
.+++.+||.|||++|.||+++|+.+|+|||++.... ..+.++||++.+++++|+..
T Consensus 84 ~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~ 148 (208)
T PRK13555 84 LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDY 148 (208)
T ss_pred HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCC
Confidence 688999999999999999999999999999986431 12458999999999977643
No 27
>PRK12359 flavodoxin FldB; Provisional
Probab=99.14 E-value=2e-09 Score=79.57 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=79.0
Q ss_pred CCCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccH--HHHHHHHHHHH
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ--ELTALTAVTQL 84 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~--~~~l~~~~~~l 84 (151)
.++.+...+++.++|.||||+||| .+.++..++.|++.+... .|+||++++||++.+.+-+. ...+..+.+.+
T Consensus 33 ~~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l 108 (172)
T PRK12359 33 HNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDL----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKL 108 (172)
T ss_pred EEcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhhC----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHH
Confidence 445555678899999999999998 677899999999998653 79999999999865432111 34567888888
Q ss_pred HhcCcEEecCCCCCCCCCccccccc-ccc-cccc
Q 031886 85 AHHGMLFVPLGYTFGSGMFEMNEVK-GGS-SYGA 116 (151)
Q Consensus 85 ~~~g~~~v~~g~~~~~~~~~~~~~~-~~~-~~g~ 116 (151)
...|..+++.-...+|.|.....+. .|. +.|.
T Consensus 109 ~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl 142 (172)
T PRK12359 109 APKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGL 142 (172)
T ss_pred HhCCCeEEeeEeCCCcccccceeeEcCCCEEEEE
Confidence 8899999986555666666666655 333 7776
No 28
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.11 E-value=8.2e-10 Score=81.09 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=67.2
Q ss_pred CCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC--CccHHHHHHHHHHHHH
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH--GGGQELTALTAVTQLA 85 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~--~g~~~~~l~~~~~~l~ 85 (151)
++.+....++.++|.|||||||| .+.++..++.|++.+.. ..++||++++|++++.. +.+....+..+.+.+.
T Consensus 33 ~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~ 108 (167)
T TIGR01752 33 NIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIK 108 (167)
T ss_pred EcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHH
Confidence 44455567899999999999999 57788899999998854 36899999999986432 1123445778888889
Q ss_pred hcCcEEecCCCCCCCC
Q 031886 86 HHGMLFVPLGYTFGSG 101 (151)
Q Consensus 86 ~~g~~~v~~g~~~~~~ 101 (151)
..|+.+++.-...++.
T Consensus 109 ~~G~~~ig~~~~~gy~ 124 (167)
T TIGR01752 109 ARGAKVVGFWPTDGYH 124 (167)
T ss_pred HcCCeEEceecCCCcc
Confidence 9999999864444443
No 29
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.10 E-value=5.3e-10 Score=83.86 Aligned_cols=80 Identities=24% Similarity=0.213 Sum_probs=62.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhh---h--------hhccCCCCcEEEEEccCCCCc----------cH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL---W--------ASQALAGKPAGIFWSTGFHGG----------GQ 73 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~---~--------~~~~l~gK~~~~f~s~g~~~g----------~~ 73 (151)
++++.+||.|||++|+||+++|+.+|.||||+... + ....|+||++.+++++|+..- .-
T Consensus 73 ~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~ 152 (199)
T PF02525_consen 73 IEELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSM 152 (199)
T ss_dssp HHHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHH
T ss_pred HHHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCCh
Confidence 48899999999999999999999999999998432 1 135789999999999876521 12
Q ss_pred HHHHHHHHHHHHhcCcEEecC
Q 031886 74 ELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 74 ~~~l~~~~~~l~~~g~~~v~~ 94 (151)
+..+..+...+...|+..+..
T Consensus 153 ~~~~~~~~~~~~~~G~~~~~~ 173 (199)
T PF02525_consen 153 DHLLPYLRGILKFCGIKDVES 173 (199)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhHHHHHHHHHhCCCceeeE
Confidence 345556777888889998853
No 30
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=98.99 E-value=4.1e-09 Score=78.72 Aligned_cols=80 Identities=24% Similarity=0.185 Sum_probs=58.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhh-hh----hccCCCCcEEEEEccCCCCc-----cHH-HHH----HH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA----SQALAGKPAGIFWSTGFHGG-----GQE-LTA----LT 79 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~-~~----~~~l~gK~~~~f~s~g~~~g-----~~~-~~l----~~ 79 (151)
.+++.+||.|||..|.||+++|+.+|.|+|+.... |. ...++||.+.++.++|+... |.. .++ .-
T Consensus 56 q~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p 135 (184)
T PRK04930 56 QALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRP 135 (184)
T ss_pred HHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHH
Confidence 77899999999999999999999999999998542 11 13589999999988765321 111 123 33
Q ss_pred HHHHHHhcCcEEecC
Q 031886 80 AVTQLAHHGMLFVPL 94 (151)
Q Consensus 80 ~~~~l~~~g~~~v~~ 94 (151)
+...+...||.+++.
T Consensus 136 ~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 136 FELTAAMCRMHWLSP 150 (184)
T ss_pred HHHHHHHcCCeEcCc
Confidence 344556778888864
No 31
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=98.97 E-value=4e-09 Score=79.14 Aligned_cols=76 Identities=22% Similarity=0.091 Sum_probs=59.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh---------hccCCCCcEEEEEccCCCCccH----HHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA---------SQALAGKPAGIFWSTGFHGGGQ----ELTALTAV 81 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~~g~~----~~~l~~~~ 81 (151)
++++..||.+||++|.||.++++++|++||++..... .+.+.||++.++.+.|+..++. +.....+.
T Consensus 82 ~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YLr 161 (202)
T COG1182 82 LEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLR 161 (202)
T ss_pred HHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHHH
Confidence 7889999999999999999999999999999974321 3578999999999988776553 33445555
Q ss_pred HHHHhcCcE
Q 031886 82 TQLAHHGML 90 (151)
Q Consensus 82 ~~l~~~g~~ 90 (151)
..|...|+.
T Consensus 162 ~ilgF~Git 170 (202)
T COG1182 162 TILGFLGIT 170 (202)
T ss_pred HHhhhcCCC
Confidence 555555553
No 32
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=98.93 E-value=6.5e-09 Score=77.16 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=72.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhh-hh----hccCCCCcEEEEEccCCCC-----ccH---HHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA----SQALAGKPAGIFWSTGFHG-----GGQ---ELTALTAV 81 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~-~~----~~~l~gK~~~~f~s~g~~~-----g~~---~~~l~~~~ 81 (151)
.+.+.+||.|||..|.||+++|+.+|.|+|+.... +. ...++||.+.++.++|+.. ++. +..+.-+.
T Consensus 50 q~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~ 129 (176)
T PRK00871 50 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQ 129 (176)
T ss_pred HHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHH
Confidence 67899999999999999999999999999997532 11 2358999988888776532 111 11244445
Q ss_pred HHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 82 TQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 82 ~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
..+...||.++++-. .|+. . ...+++-.+.++++.+++....
T Consensus 130 ~~~~~~G~~~l~~~~----------------~~~~-----~--~~~~~~~~~~~~~~~~~L~~~~ 171 (176)
T PRK00871 130 ATALYCGLNWLPPFA----------------MHCT-----F--ICDDETLEGQARHYKQRLLEWQ 171 (176)
T ss_pred HHHHHcCCeEcceEE----------------Eeee-----c--cCCHHHHHHHHHHHHHHHHhHH
Confidence 555667887775411 1222 0 2234555667777888877644
No 33
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=98.92 E-value=1e-08 Score=74.14 Aligned_cols=68 Identities=31% Similarity=0.274 Sum_probs=50.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGML 90 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~ 90 (151)
-++|.++|+|+|.||-||++.++.+|+.+|+++. .+.||++.+++ +|+.+|+.- ...+........|.
T Consensus 81 ~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivS-yGGhGGg~c--~~qL~~v~~fLkm~ 148 (199)
T KOG4530|consen 81 RQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVS-YGGHGGGRC--QYQLRQVGVFLKMH 148 (199)
T ss_pred HHHHhhcceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEE-ecCCCCchH--HHHHHHHHhhheee
Confidence 4679999999999999999999999999999985 58999997555 555444432 23333333344455
No 34
>PRK09271 flavodoxin; Provisional
Probab=98.87 E-value=1.9e-08 Score=73.33 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=66.3
Q ss_pred hHHHhhCCEeEEeccccCCcc-hHHHHHHHHHhhhhhhhccCCCCcEEEEEccC-CCCc-cHHHHHHHHHHHHHhcCcEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVM-AAQCKAFFDATYELWASQALAGKPAGIFWSTG-FHGG-GQELTALTAVTQLAHHGMLF 91 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~-~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g-~~~g-~~~~~l~~~~~~l~~~g~~~ 91 (151)
..++.++|+||||||||+++. +..++.|++.+... ..++|++++|++++ +|++ ..-.+...+...+...
T Consensus 46 ~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~---- 117 (160)
T PRK09271 46 PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAET----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS---- 117 (160)
T ss_pred ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHH----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc----
Confidence 346778999999999997665 55799999998753 45799999999963 2222 1113445555555321
Q ss_pred ecCCCCCCCCCccccccccccccccceecCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 031886 92 VPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTD-LELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 92 v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e-~~l~~a~~lG~~la~~~~ 147 (151)
...+. ....|++ .|+++++++++++++.++
T Consensus 118 -~~~l~-------------------------~~~~p~~~~d~~~~~~~~~~~~~~~~ 148 (160)
T PRK09271 118 -YPRLK-------------------------IEQMPHGERDAAAIDNWTDKVLALCK 148 (160)
T ss_pred -CCcee-------------------------eecCCccchhHHHHHHHHHHHHHHhh
Confidence 11111 1134654 578999999999997763
No 35
>PRK06934 flavodoxin; Provisional
Probab=98.84 E-value=7.7e-09 Score=79.21 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=51.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQL 84 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l 84 (151)
.+++.++|.|+||+|+||+.+++.++.|||+. +++||.+..|+++|+.+ ...++..+...+
T Consensus 124 ~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg--~g~s~~~i~~l~ 184 (221)
T PRK06934 124 IQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSR--FSDSLREIKRLQ 184 (221)
T ss_pred HHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCCC--ccchHHHHHHHc
Confidence 57899999999999999999999999999986 68999999999986533 334566666543
No 36
>PRK07116 flavodoxin; Provisional
Probab=98.72 E-value=4.6e-08 Score=71.27 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=43.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 70 (151)
..++.++|.||||+|+|++.++..++.|++++ .+.||++++|+++|+..
T Consensus 71 ~~~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~ 119 (160)
T PRK07116 71 IENIAEYDVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSG 119 (160)
T ss_pred HhhHHhCCEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCC
Confidence 34788999999999999999999999999875 58899999999976543
No 37
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.70 E-value=2.4e-08 Score=72.76 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=45.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQL 84 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l 84 (151)
..++.++|.|++|+|+|++.+++.+.+||++. .++||.++.|.++|+.+ ...++..|...+
T Consensus 68 ~~d~~~YD~I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~--~~~~~~~l~~~~ 128 (156)
T PF12682_consen 68 IPDLSDYDTIFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSG--FGNSLEDLKKLC 128 (156)
T ss_dssp -S-GGG-SEEEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred ccCcccCCEEEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCC--hhHHHHHHHHHC
Confidence 44789999999999999999999999999975 69999999999986532 334566666554
No 38
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.61 E-value=8.2e-08 Score=68.66 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=44.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 69 (151)
..++.++|.||+|||+|.+.+++.++.|+++... .+++|++++|+++++.
T Consensus 38 ~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~-----~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 38 EPDLSDYDAVIFGSPIYAGRIPGEMREFIKKNKD-----NLKNKKVALFSVGGSS 87 (143)
T ss_pred ccccccCCEEEEEEEEECCcCCHHHHHHHHHHHH-----HHcCCcEEEEEEeCCC
Confidence 4578999999999999999999999999999853 6899999999998764
No 39
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=98.60 E-value=3.7e-07 Score=64.96 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=46.4
Q ss_pred HHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCC-CCc-cHHHHHHHHHHHHH
Q 031886 16 HQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF-HGG-GQELTALTAVTQLA 85 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~-~~g-~~~~~l~~~~~~l~ 85 (151)
.++.++|.|||||||| .+.++..++.|++.+. .++|.+++|+++++ +++ ..-.+.+.+...+.
T Consensus 46 ~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 46 LDPENYDLVFLGTWTWERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred CChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 4677899999999998 5667779999999873 37899999999742 221 11245667776664
No 40
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=98.48 E-value=1.8e-07 Score=69.44 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=42.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTG 67 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g 67 (151)
..++.++|.||+|||+|++.+++.++.|+++.. ..|++|++++|+++.
T Consensus 41 ~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 41 EPDLSDYDRVVIGASIRYGHFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred ccCHHHCCEEEEECccccCCcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 346889999999999999999999999999864 369999999999863
No 41
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=65.67 Aligned_cols=55 Identities=29% Similarity=0.313 Sum_probs=47.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh----hh-----ccCCCCcEEEEEccCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW----AS-----QALAGKPAGIFWSTGFH 69 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~----~~-----~~l~gK~~~~f~s~g~~ 69 (151)
.+++.+||.|||--|.||+++|+.+|.||||..... .. ..|+||.+.+++|+|++
T Consensus 62 ~e~l~~AD~ivlqfPlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 62 QEKLLWADVIVLQFPLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred HHHHHhcceEEEEcCchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 889999999999999999999999999999975322 11 46999999999998753
No 42
>PRK09004 FMN-binding protein MioC; Provisional
Probab=98.36 E-value=5.5e-06 Score=59.62 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=62.5
Q ss_pred ChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 14 RPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..+++.++|.+||++||| .|.++...+.|++.+... ...++|+.+++||.+.+.....-.....+...|...|...+
T Consensus 40 ~~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v 117 (146)
T PRK09004 40 LLDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQI 117 (146)
T ss_pred CHHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEe
Confidence 378899999999999999 799999999999988652 24699999999998544322223446788888888999888
Q ss_pred cC
Q 031886 93 PL 94 (151)
Q Consensus 93 ~~ 94 (151)
..
T Consensus 118 ~~ 119 (146)
T PRK09004 118 GE 119 (146)
T ss_pred ec
Confidence 54
No 43
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=98.34 E-value=1.6e-06 Score=61.44 Aligned_cols=88 Identities=25% Similarity=0.213 Sum_probs=62.5
Q ss_pred CCCCCCC--hHHHhhCCEeEEeccccCCc-chHHHHHHHHHhhhhh----hhccCCCCcEEEEEccCCCCccHHHHHHHH
Q 031886 8 NDVPVIR--PHQLKEADGFLFGFPSRFGV-MAAQCKAFFDATYELW----ASQALAGKPAGIFWSTGFHGGGQELTALTA 80 (151)
Q Consensus 8 ~~~~~~~--~~~l~~aD~iIlgsPtY~~~-~~~~~K~flDrl~~~~----~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~ 80 (151)
.++.+.+ +.++.+++.+|+++|||+.+ ++..++.+++++...+ ....++++.+++|+.+.+..+..-.....+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l 110 (143)
T PF00258_consen 31 VDLDDFDDSPSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKL 110 (143)
T ss_dssp EEGGGSCHHHHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHH
T ss_pred echhhhhhhhhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHH
Confidence 3455555 55999999999999999754 6656665555554433 235789999999988543322222457889
Q ss_pred HHHHHhcCcEEecCC
Q 031886 81 VTQLAHHGMLFVPLG 95 (151)
Q Consensus 81 ~~~l~~~g~~~v~~g 95 (151)
...|...|+..+.+.
T Consensus 111 ~~~l~~~G~~~~~~~ 125 (143)
T PF00258_consen 111 DERLEELGAKRVGPL 125 (143)
T ss_dssp HHHHHHTTEEEESSS
T ss_pred HHHHHHCCCEEEECc
Confidence 999999999999753
No 44
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.28 E-value=2.3e-06 Score=62.57 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=39.5
Q ss_pred HhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC
Q 031886 18 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 69 (151)
+.++|.|++|+++|.|.+...++.||.+ ++||.+++|+|+|..
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~---------l~~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKK---------LKGKKVALFGTAGAG 79 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHH---------ccCCeEEEEEecCCC
Confidence 8889999999999999999999999986 578999999998754
No 45
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=97.95 E-value=0.00011 Score=52.96 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=69.8
Q ss_pred HHhhCCEeEEeccccCCcchH-HHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccH--HHHHHHHHHHHHhcCcEEec
Q 031886 17 QLKEADGFLFGFPSRFGVMAA-QCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ--ELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~-~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~--~~~l~~~~~~l~~~g~~~v~ 93 (151)
.+.++|.+++|||||..+-.+ .+..|++.+.. ..+++|++++|+++ .+.... -.....+...+...|....+
T Consensus 45 ~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~g-d~~~~~~fc~~~~~~~~~~~~~g~~~~~ 119 (151)
T COG0716 45 LLESYDELLLGTPTWGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLG-DQSYYGYFCEAGGNFEDILEEKGAKAVG 119 (151)
T ss_pred hhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc----cCcCCceEEEEecc-ccccchHHHHHHHHHHHHHHHcCccccc
Confidence 446899999999999765555 99999999975 37999999999993 222222 23356777777777643332
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
..-..+ . .....+++++.++++.+++++..
T Consensus 120 ~~~~~~----------------~-----~~~~~~~e~~~~~~~~w~~~~~~ 149 (151)
T COG0716 120 ILETLG----------------Y-----IFDASPNEEDEKRIKEWVKQILN 149 (151)
T ss_pred cccccc----------------e-----eccCCCCCccHHHHHHHHHHHHh
Confidence 211110 0 00134888999999999998865
No 46
>PRK08105 flavodoxin; Provisional
Probab=97.86 E-value=0.00017 Score=52.08 Aligned_cols=74 Identities=11% Similarity=-0.056 Sum_probs=57.7
Q ss_pred hhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 19 KEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 19 ~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.++|.+|+++||| .|.++..++.|++.+... ...++|+.+++||.+.+.....-.....+...|..+|...+..
T Consensus 47 ~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 47 YQDELVLVVTSTTGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred ccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 4579999999999 789999999999998753 2379999999999864322112345678888888999988864
No 47
>PRK05723 flavodoxin; Provisional
Probab=97.42 E-value=0.0034 Score=45.42 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=59.9
Q ss_pred CChHHHhhC--CEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc-cHHHHHHHHHHHHHhcC
Q 031886 13 IRPHQLKEA--DGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG-GQELTALTAVTQLAHHG 88 (151)
Q Consensus 13 ~~~~~l~~a--D~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g-~~~~~l~~~~~~l~~~g 88 (151)
....++.++ |.|||+++|| .|.++.....|.+.+.... ...|+|+.+++|+.+.+..+ ..-.....+...|...|
T Consensus 38 ~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lG 116 (151)
T PRK05723 38 ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELG 116 (151)
T ss_pred CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCC
Confidence 345666666 9999999999 5889999999999986421 12699999999998543322 12345678888888888
Q ss_pred cEEecC
Q 031886 89 MLFVPL 94 (151)
Q Consensus 89 ~~~v~~ 94 (151)
..-+..
T Consensus 117 A~rv~~ 122 (151)
T PRK05723 117 VREVQP 122 (151)
T ss_pred CcEeec
Confidence 887743
No 48
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=97.12 E-value=0.0048 Score=53.89 Aligned_cols=88 Identities=11% Similarity=-0.062 Sum_probs=67.4
Q ss_pred CCCCCCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHH
Q 031886 5 PKTNDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQ 83 (151)
Q Consensus 5 ~~~~~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~ 83 (151)
++..++.+.+.+++.+.+.+||+++|| .|.++..++.|++.+...- ...|+|+.+++||.+.+.....-.....+...
T Consensus 90 ~~v~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~ 168 (597)
T TIGR01931 90 VRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKR 168 (597)
T ss_pred cEEechHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHH
Confidence 445667777788999999999999998 7999999999999885421 24689999999998544322223456788888
Q ss_pred HHhcCcEEec
Q 031886 84 LAHHGMLFVP 93 (151)
Q Consensus 84 l~~~g~~~v~ 93 (151)
|...|...+.
T Consensus 169 L~~lGa~ri~ 178 (597)
T TIGR01931 169 LEELGGKRLL 178 (597)
T ss_pred HHHcCCeEee
Confidence 8888888774
No 49
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=97.10 E-value=0.0052 Score=53.69 Aligned_cols=87 Identities=9% Similarity=-0.044 Sum_probs=66.7
Q ss_pred CCCCCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHH
Q 031886 6 KTNDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQL 84 (151)
Q Consensus 6 ~~~~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l 84 (151)
...++.+.+.+++.+.+.+||+++|| .|.++..++.|++.+...- ...|.|+.+++||.+.+.....-.....+...|
T Consensus 94 ~v~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL 172 (600)
T PRK10953 94 NLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKL 172 (600)
T ss_pred EEechHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHH
Confidence 34566666788899999999999999 7999999999999885321 246999999999986543222234467888888
Q ss_pred HhcCcEEec
Q 031886 85 AHHGMLFVP 93 (151)
Q Consensus 85 ~~~g~~~v~ 93 (151)
...|..-+.
T Consensus 173 ~~lGA~rl~ 181 (600)
T PRK10953 173 AELGAERLL 181 (600)
T ss_pred HHCCCeEee
Confidence 888888774
No 50
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=96.96 E-value=0.00079 Score=49.08 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=41.2
Q ss_pred HHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEcc
Q 031886 17 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 66 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~ 66 (151)
++.++|.||+|+|+|.+.....+++|+.+-.. .|..||.++|++.
T Consensus 44 ~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e-----~L~~kP~A~f~vn 88 (175)
T COG4635 44 ALEDYDAVVIGASIRYGHFHEAVQSFVKKHAE-----ALSTKPSAFFSVN 88 (175)
T ss_pred ChhhCceEEEecchhhhhhHHHHHHHHHHHHH-----HHhcCCceEEEee
Confidence 67899999999999999999999999999764 6999999999984
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=96.70 E-value=0.015 Score=41.26 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHhhCCEeEEeccccC-----CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHH---HHHHHHHHHHHhcC
Q 031886 17 QLKEADGFLFGFPSRF-----GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQE---LTALTAVTQLAHHG 88 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~-----~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~---~~l~~~~~~l~~~g 88 (151)
.+...+-+|+.+|||. +.++.+++.||+... -.....+++++ |.+. ... .+...+... .+
T Consensus 35 ~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gs-Gnr~-~g~~f~~a~~~i~~~---~~ 102 (134)
T PRK03600 35 RLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEH-------NRKLLRGVIAS-GNRN-FGDAFALAGDVISAK---CQ 102 (134)
T ss_pred cccCCCCEEEEEeccCCCCcCCcccHHHHHHHhccc-------cCCcEEEEEEe-cCch-HHHHHHHHHHHHHHH---hC
Confidence 3556788999999997 489999999998742 22346777776 4432 212 122233322 22
Q ss_pred cEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHH
Q 031886 89 MLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYV 142 (151)
Q Consensus 89 ~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~l 142 (151)
++..+. -...++++|+++++++.+++
T Consensus 103 ---vp~l~k-------------------------~El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 103 ---VPLLYR-------------------------FELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred ---CCeEEE-------------------------EecCCCHHHHHHHHHHHHHH
Confidence 111111 12468889999999998888
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=96.40 E-value=0.062 Score=37.72 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEcc
Q 031886 17 QLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 66 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~ 66 (151)
++ ++|.|++ |+|| .|.+|.++..|++.+. . +..++|+|+
T Consensus 33 ~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~------n---~~~gV~gSG 72 (125)
T TIGR00333 33 HV-DQEFVLI-TYTGGFGAVPKQTISFLNKKH------N---LLRGVAASG 72 (125)
T ss_pred hc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhh------h---cEEEEEEcC
Confidence 44 8999999 9999 5669999999999763 2 889999973
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=79.22 E-value=20 Score=25.99 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=26.9
Q ss_pred HhhCCEeEEecccc-CCc----------chHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 18 LKEADGFLFGFPSR-FGV----------MAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 18 l~~aD~iIlgsPtY-~~~----------~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+..-.-.|+-+||| .++ ++.++..|+..- ..+....++|++
T Consensus 51 ~~~~~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigs 102 (154)
T PRK02551 51 FPETEPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGS 102 (154)
T ss_pred cccCCCEEEEEeeecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEee
Confidence 34456778999999 555 566666666431 235567788887
No 54
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=67.92 E-value=24 Score=29.34 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=46.8
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHH-HHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCK-AFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K-~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
++-++.+.+.+....+..+|-++...-+++- ..+=.+.+. ....++||.++++|. |.. | ..+...+..+|
T Consensus 69 ~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~-~g~~L~gktvGIIG~-G~I-G------~~vA~~l~a~G 139 (378)
T PRK15438 69 TDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER-DGFSLHDRTVGIVGV-GNV-G------RRLQARLEALG 139 (378)
T ss_pred ccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc-CCCCcCCCEEEEECc-CHH-H------HHHHHHHHHCC
Confidence 3445677788888888899988765433322 111111111 124689999999997 222 1 35566667889
Q ss_pred cEEec
Q 031886 89 MLFVP 93 (151)
Q Consensus 89 ~~~v~ 93 (151)
|.++.
T Consensus 140 ~~V~~ 144 (378)
T PRK15438 140 IKTLL 144 (378)
T ss_pred CEEEE
Confidence 98885
No 55
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=65.59 E-value=17 Score=28.36 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=39.9
Q ss_pred hHHHhhCC-EeEEeccccC--CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCc
Q 031886 15 PHQLKEAD-GFLFGFPSRF--GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 89 (151)
Q Consensus 15 ~~~l~~aD-~iIlgsPtY~--~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~ 89 (151)
.+++..+| +||+|+-.|. +.++.-++.=+|.-..++ -+||..-++.|+|. .+....-...|.+.+..+|.
T Consensus 39 ~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LY----k~gk~~~ilvSGg~-~~~~~~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 39 LQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAY----NSGKVNYLLLSGDN-ALQSYNEPMTMRKDLIAAGV 111 (239)
T ss_pred HhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHH----HhCCCCEEEEeCCC-CCCCCCHHHHHHHHHHHcCC
Confidence 34444444 5678988764 567777676666655543 34566556666543 22222224567777766665
No 56
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=65.08 E-value=42 Score=27.17 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=57.5
Q ss_pred ChHHHhhCCEeEEeccccCCcc-hHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 14 RPHQLKEADGFLFGFPSRFGVM-AAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY~~~~-~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
+.+.+.++|.+|+=+| +|+. ..-.|+|++.+- -.+++++.-.. .. ..++..|...+-.=+
T Consensus 135 D~EAvk~aei~I~ftP--fG~~t~~Iikki~~~ip-----------EgAII~~tCTI-pt-----~~ly~~le~l~R~Dv 195 (342)
T PRK00961 135 DREAVADADIVITWLP--KGGMQPDIIEKFADDIK-----------EGAIVTHACTI-PT-----TKFAKIFKDLGRDDL 195 (342)
T ss_pred cHHHhcCCCEEEEecC--CCCCchHHHHHHHhhCC-----------CCCEEeccccC-CH-----HHHHHHHHHhCcccC
Confidence 3788999999999998 5665 778899999873 34455553221 11 234444443332211
Q ss_pred cC-CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 93 PL-GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 93 ~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
+. .|.. +..-|.-..+-.+...-+|+.++++.+|+++....+
T Consensus 196 gIsS~HP------------aaVPgt~Gq~~i~egyAtEEqI~klveL~~sa~k~a 238 (342)
T PRK00961 196 NVTSYHP------------GAVPEMKGQVYIAEGYADEEAVEKLYEIGKKARGNA 238 (342)
T ss_pred CeeccCC------------CCCCCCCCceecccccCCHHHHHHHHHHHHHhCCCe
Confidence 11 1111 111111000002235679999999999999876544
No 57
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=64.62 E-value=27 Score=29.09 Aligned_cols=75 Identities=16% Similarity=0.025 Sum_probs=46.4
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHH-HHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCK-AFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K-~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
++.++.+.+.+....+.-+|-++...-+++- ..+=.+.+. ....++||+++++|. |.. | ..+...+..+|
T Consensus 69 ~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-~g~~l~gktvGIIG~-G~I--G-----~~va~~l~a~G 139 (381)
T PRK00257 69 TDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-EGVDLAERTYGVVGA-GHV--G-----GRLVRVLRGLG 139 (381)
T ss_pred ccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-cCCCcCcCEEEEECC-CHH--H-----HHHHHHHHHCC
Confidence 3445677788888888888988765544331 111112111 124789999999996 221 1 35566667889
Q ss_pred cEEec
Q 031886 89 MLFVP 93 (151)
Q Consensus 89 ~~~v~ 93 (151)
|.++.
T Consensus 140 ~~V~~ 144 (381)
T PRK00257 140 WKVLV 144 (381)
T ss_pred CEEEE
Confidence 98874
No 58
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=64.29 E-value=21 Score=30.94 Aligned_cols=84 Identities=13% Similarity=0.009 Sum_probs=61.8
Q ss_pred CCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhh-hhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELW-ASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
.+++-+++++.+.+.+||.+.|- -|.++..||+|..-+.+.- ...-|++--.+++|-+.+.........+.+...|..
T Consensus 36 s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~q 115 (574)
T KOG1159|consen 36 SMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQ 115 (574)
T ss_pred eccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHH
Confidence 45666789999999999998887 6899999999977765431 123578888999998544433334556778888888
Q ss_pred cCcEEe
Q 031886 87 HGMLFV 92 (151)
Q Consensus 87 ~g~~~v 92 (151)
.|..-+
T Consensus 116 LGA~~~ 121 (574)
T KOG1159|consen 116 LGANSV 121 (574)
T ss_pred hCcccc
Confidence 887654
No 59
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=63.85 E-value=51 Score=23.58 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.0
Q ss_pred HhhCCEeEEeccccCCc-----chHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 18 LKEADGFLFGFPSRFGV-----MAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~-----~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+.=.+-.|+-+|||.++ ++.++-.||.. ..-..+..++++|
T Consensus 37 ~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~-------~~Nr~~~rGViaS 82 (141)
T COG1780 37 IEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNN-------EHNRALCRGVIAS 82 (141)
T ss_pred ccCCCCeEEEeccccCCCccCccCHHHHHHhcc-------ccchhheEEEEec
Confidence 55567889999999766 78888888753 1234456677776
No 60
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.98 E-value=15 Score=26.20 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
+.+.+||.||++.|++. ++.+++++.. .++.....++.+-|-..+......+.+.+.+....+.++
T Consensus 65 ~a~~~ad~IiiavPs~~------~~~~~~~l~~-----~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~l 130 (157)
T PF01210_consen 65 EALEDADIIIIAVPSQA------HREVLEQLAP-----YLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVL 130 (157)
T ss_dssp HHHTT-SEEEE-S-GGG------HHHHHHHHTT-----TSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEE
T ss_pred HHhCcccEEEecccHHH------HHHHHHHHhh-----ccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEe
Confidence 45788999999999964 5778888865 343444444444332122222333444544444444444
No 61
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.81 E-value=9.2 Score=25.34 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=36.1
Q ss_pred hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 19 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 19 ~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.+.||+++- ...+.+-.+.+++++.. +||++.++++.++. +..++.+.|..+|+.+-
T Consensus 3 ~D~dGvl~~----g~~~ipga~e~l~~L~~-------~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 3 FDLDGVLYN----GNEPIPGAVEALDALRE-------RGKPVVFLTNNSSR------SREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EESTTTSEE----TTEE-TTHHHHHHHHHH-------TTSEEEEEES-SSS-------HHHHHHHHHHTTTT--
T ss_pred EeCccEeEe----CCCcCcCHHHHHHHHHH-------cCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCC
Confidence 456777764 44456667888888853 57999999985433 23566777777787644
No 62
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=77 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=32.8
Q ss_pred cCCCCcEEEEEccCCCCc--cHHHHHHHHHHHHHhcCcEEecCCCC
Q 031886 54 ALAGKPAGIFWSTGFHGG--GQELTALTAVTQLAHHGMLFVPLGYT 97 (151)
Q Consensus 54 ~l~gK~~~~f~s~g~~~g--~~~~~l~~~~~~l~~~g~~~v~~g~~ 97 (151)
.++||+..++-++ +..| .+-..|+.+.......|+.|++.+..
T Consensus 22 ~~~GkVlLIVNtA-SkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 22 DYKGKVLLIVNTA-SKCGFTPQYEGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred HhCCcEEEEEEcc-cccCCcHhHHHHHHHHHHHhhCCcEEEecccc
Confidence 6899999877764 3333 23456899999999999999987644
No 63
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=49.57 E-value=18 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=18.4
Q ss_pred HhhCCEeEEeccccCCc-----chHHHHHHHHH
Q 031886 18 LKEADGFLFGFPSRFGV-----MAAQCKAFFDA 45 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~-----~~~~~K~flDr 45 (151)
..-.+=.|+-+|||..+ ++.++..||+.
T Consensus 35 ~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~ 67 (122)
T PF07972_consen 35 LEVDEPFVLITPTYGFGENDGGVPKQVIRFLEN 67 (122)
T ss_dssp S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHS
T ss_pred ccCCCCEEEEecccCCCCCCCCCCHHHHHHHHH
Confidence 34455678889999644 89999999993
No 64
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=48.64 E-value=1.1e+02 Score=24.81 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=56.4
Q ss_pred ChHHHhhCCEeEEeccccCCcc-hHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 14 RPHQLKEADGFLFGFPSRFGVM-AAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY~~~~-~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
+.+.++++|.+|+=+| +|+. ..-.|+|++.+- -.+++++.-.. .. ..+...+...+-.=+
T Consensus 133 D~EAv~~aei~I~ftP--fG~~q~~Iikkii~~lp-----------EgAII~~tCTI-pt-----~~ly~ilE~l~R~Dv 193 (340)
T TIGR01723 133 DREAVEDADIIITWLP--KGNKQPDIIKKFIDDIP-----------EGAIVTHACTI-PT-----TKFAKIFEDLGREDL 193 (340)
T ss_pred cHHHhcCCCEEEEEcC--CCCCchHHHHHHHhhCC-----------CCCEEeccccC-Ch-----HHHHHHHHhhCcccC
Confidence 3788999999999998 5664 788899999873 34455553221 11 233333333332211
Q ss_pred cC-CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 93 PL-GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 93 ~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
+. .|..+.. -|.. | +++. ....-+|+.++++.+|+++....+
T Consensus 194 gVsS~HPaaV--------Pgt~-~-q~Yi--~egyAtEEqI~klveL~~sa~k~a 236 (340)
T TIGR01723 194 NVTSYHPGCV--------PEMK-G-QVYI--AEGYASEEAVNKLYELGKKARGKA 236 (340)
T ss_pred CeeccCCCCC--------CCCC-C-ceEe--ecccCCHHHHHHHHHHHHHhCCCe
Confidence 10 1111100 0000 0 1111 124679999999999999876544
No 65
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=47.72 E-value=95 Score=24.88 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=48.2
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhhh-----------ccCCCCcEEEEEc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWAS-----------QALAGKPAGIFWS 65 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~~-----------~~l~gK~~~~f~s 65 (151)
++.++.+.+.+....|.-+|.|+...-+.+ -.+..++. ..|.. ..+.||+++++|.
T Consensus 74 ~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~ 153 (311)
T PRK08410 74 TNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGL 153 (311)
T ss_pred cccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECC
Confidence 345667888888999999999987654332 22222221 12321 3589999999996
Q ss_pred cCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 66 TGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 66 ~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
|.. | +.+.+.+..+||.++.
T Consensus 154 -G~I--G-----~~vA~~~~~fgm~V~~ 173 (311)
T PRK08410 154 -GTI--G-----KRVAKIAQAFGAKVVY 173 (311)
T ss_pred -CHH--H-----HHHHHHHhhcCCEEEE
Confidence 221 2 3555666788999885
No 66
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=47.52 E-value=1.5e+02 Score=24.06 Aligned_cols=82 Identities=18% Similarity=0.104 Sum_probs=48.6
Q ss_pred eccccCCc--chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCCCCCCCCcc
Q 031886 27 GFPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFE 104 (151)
Q Consensus 27 gsPtY~~~--~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~~~~~~~~ 104 (151)
+-|++|+- ..-+...+-|-+.-..+.+.++|++++.+|-+ .+...++......+||.+.-.
T Consensus 121 ~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg-------NNv~nSl~~~~a~~G~dv~ia---------- 183 (310)
T COG0078 121 GVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDG-------NNVANSLLLAAAKLGMDVRIA---------- 183 (310)
T ss_pred CCceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCc-------chHHHHHHHHHHHhCCeEEEE----------
Confidence 34787752 23344444444322222345999999988852 234567777777788876521
Q ss_pred ccccccccccccceecCCCCCCCCHHHHHHHHHHHHH
Q 031886 105 MNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKY 141 (151)
Q Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~ 141 (151)
.|+ ...|+++-++.|+++++.
T Consensus 184 ---------------~Pk-~~~p~~~~~~~a~~~a~~ 204 (310)
T COG0078 184 ---------------TPK-GYEPDPEVVEKAKENAKE 204 (310)
T ss_pred ---------------CCC-cCCcCHHHHHHHHHHHHh
Confidence 001 135888888988887653
No 67
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=46.85 E-value=29 Score=25.92 Aligned_cols=42 Identities=12% Similarity=-0.066 Sum_probs=27.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
...+.++|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 47 ~~~~~~~d~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 88 (249)
T PRK05928 47 QLAALGADWVIFTSKN-------AVEFLLSALKKKK-LKWPKNKKYAAIG 88 (249)
T ss_pred HhhCCCCCEEEEECHH-------HHHHHHHHHHhcC-cCCCCCCEEEEEC
Confidence 4677889999999987 5667777664111 1245556666555
No 68
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=46.69 E-value=28 Score=26.78 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=33.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+..+.++|.|||.||. .++.|++++...... .+++++.+++|.
T Consensus 45 l~~l~~~d~vvfTS~~-------av~~~~~~l~~~~~~-~~~~~~i~aVG~ 87 (248)
T COG1587 45 LEDLDSADWVVFTSPN-------AVRFFFEALKEQGLD-ALKNKKIAAVGE 87 (248)
T ss_pred HhccccCCEEEEECHH-------HHHHHHHHHHhhccc-ccccCeEEEEcH
Confidence 6777779999999997 678888888654222 567888888884
No 69
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=45.88 E-value=23 Score=25.19 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031886 132 LQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 132 l~~a~~lG~~la~~~~~ 148 (151)
-+.+.++|+|||+.|+-
T Consensus 108 EADa~EFGERiaELAKi 124 (151)
T PF06554_consen 108 EADAQEFGERIAELAKI 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35688999999999873
No 70
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=45.88 E-value=98 Score=21.35 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=32.6
Q ss_pred hHHHh-hCCEeEE-ecccc---CCcchHHHHHHHHHhhhhhhhccCC-CCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 15 PHQLK-EADGFLF-GFPSR---FGVMAAQCKAFFDATYELWASQALA-GKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 15 ~~~l~-~aD~iIl-gsPtY---~~~~~~~~K~flDrl~~~~~~~~l~-gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
++.+. -||+|++ |+|.- +..-+...+.=+.++..+.....+. .|......+. .....-...+.++.+.+..+
T Consensus 46 l~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~-~~~~~fa~~~~~f~~~i~~l 123 (124)
T PF02662_consen 46 LRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA-PEGKRFAEIVNEFTERIKEL 123 (124)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc-ccHHHHHHHHHHHHHHHHHc
Confidence 34443 4999999 66642 2222233333344444333333455 4444444432 22222234455555555443
No 71
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=44.80 E-value=50 Score=21.83 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=26.5
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhh
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 48 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~ 48 (151)
++..+||.||+-|.+.-...--.+...+.++..
T Consensus 32 ~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~ 64 (98)
T PF00919_consen 32 DDPEEADVIIINTCTVRESAEQKSRNRIRKLKK 64 (98)
T ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 445789999999999888777777777777754
No 72
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=44.62 E-value=1.3e+02 Score=23.23 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=35.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.+.+.++|.||+++|+ ..+..++.++... ++ +..+++-.++ -+...++.+.+.+. .+..+|+
T Consensus 40 ~~~~~~~DlvvlavP~------~~~~~~l~~~~~~-----~~--~~~iv~Dv~S---vK~~~~~~~~~~~~-~~~~~v~ 101 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV------SAIEDVLEEIAPY-----LK--PGAIVTDVGS---VKAPIVEAMERLLP-EGVRFVG 101 (258)
T ss_dssp HHHGGCCSEEEE-S-H------HHHHHHHHHHHCG-----S---TTSEEEE--S----CHHHHHHHHHHHT-SSGEEEE
T ss_pred HhHhcCCCEEEEcCCH------HHHHHHHHHhhhh-----cC--CCcEEEEeCC---CCHHHHHHHHHhcC-cccceee
Confidence 5788999999999998 5578888887642 31 1222332222 23334555555544 5677775
No 73
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=44.46 E-value=1.6e+02 Score=23.25 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=23.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHh
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 46 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl 46 (151)
.+.+.+||.||-=-|- -+--+.-+|.|+|.+
T Consensus 134 reavedad~iitwlpk-g~~qpdiikkfiddi 164 (343)
T COG4074 134 REAVEDADMIITWLPK-GGVQPDIIKKFIDDI 164 (343)
T ss_pred HhhhcCCCeEEEeccC-CCCCccHHHHHHhcC
Confidence 6778999999865554 334477889999987
No 74
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=43.64 E-value=23 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=16.6
Q ss_pred CCCChHHHhhCCEeEEeccc
Q 031886 11 PVIRPHQLKEADGFLFGFPS 30 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPt 30 (151)
+.++.++|.+||+||+++=.
T Consensus 47 N~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 47 NRLTAEDIAAADVVILAADI 66 (122)
T ss_pred CcCCHHHHHhCCEEEEEecc
Confidence 34568999999999999855
No 75
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=43.61 E-value=61 Score=24.07 Aligned_cols=45 Identities=13% Similarity=-0.077 Sum_probs=28.5
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 69 (151)
..-++||.+++.-|+ +-+|+..+.++.. .-..=|.+.++|++...
T Consensus 66 aSPRhADvLlVtG~v-----T~km~~~l~~~ye----qmPePK~VIA~G~CA~s 110 (173)
T PRK14818 66 ASPRQADFMIVAGTL-----TYKMAERARLLYD----QMPEPKYVISMGSCSNC 110 (173)
T ss_pred CCcccccEEEEeCcC-----ccccHHHHHHHHH----hCCCCCEEEEecccccc
Confidence 345789998887665 4444445544442 13456889999987553
No 76
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=43.02 E-value=73 Score=22.88 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=30.5
Q ss_pred hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC
Q 031886 19 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 19 ~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 69 (151)
+.||+|++.-| ++-+|+.-+.+++.. -..=|.+.++|+++..
T Consensus 48 RhADiLlVTG~-----vT~~~~e~lkk~Yea----~PePKiViA~GaCa~~ 89 (148)
T COG3260 48 RHADILLVTGA-----VTRQMREPLKKAYEA----MPEPKIVIAVGACALS 89 (148)
T ss_pred ccccEEEEecc-----ccHHHHHHHHHHHHh----CCCCcEEEEEcccccC
Confidence 56888887655 477888888887642 4567899999987653
No 77
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=43.02 E-value=14 Score=29.33 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..|||||++|||
T Consensus 164 ~r~DGliVsTPT 175 (281)
T COG0061 164 FRGDGLIVSTPT 175 (281)
T ss_pred EecCEEEEEcCC
Confidence 469999999999
No 78
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=42.89 E-value=40 Score=25.91 Aligned_cols=27 Identities=4% Similarity=-0.113 Sum_probs=20.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhh
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 48 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~ 48 (151)
+.++.++|.|||.||+ -++.|++.+..
T Consensus 50 l~~l~~~d~iifTS~n-------aV~~~~~~l~~ 76 (255)
T PRK05752 50 LLELDRYCAVIVVSKP-------AARLGLELLDR 76 (255)
T ss_pred HhcCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 4667899999999987 46677777653
No 79
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=42.04 E-value=46 Score=24.86 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=31.7
Q ss_pred HHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc
Q 031886 17 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g 71 (151)
.=++||.+|+.-|+ +-.++..++++... ..+=|.+.++|++...+|
T Consensus 70 sPR~aDillVeG~V-----T~~m~~~l~~~~e~----~p~pk~VIAvGaCA~~GG 115 (180)
T PRK14820 70 SPRQADMLMVMGTI-----AKKMAPVLKQVYLQ----MAEPRWVVAVGACASSGG 115 (180)
T ss_pred CCccceEEEEEecC-----CcccHHHHHHHHHh----cCCCCeEEEEecccccCC
Confidence 34678888886555 55667777777642 456688999999866543
No 80
>PRK00865 glutamate racemase; Provisional
Probab=41.56 E-value=1.4e+02 Score=23.19 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHH
Q 031886 56 AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQA 135 (151)
Q Consensus 56 ~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a 135 (151)
.+++.++|=|+ =|.-..++++.+.+-...+.+++.. ...+||. ...++-.+.+
T Consensus 4 ~~~~IgvfDSG----iGGLtvl~~i~~~lp~~~~iY~~D~--------------~~~PYG~---------ks~~~i~~~~ 56 (261)
T PRK00865 4 MNAPIGVFDSG----VGGLTVLREIRRLLPDEHIIYVGDT--------------ARFPYGE---------KSEEEIRERT 56 (261)
T ss_pred CCCeEEEEECC----ccHHHHHHHHHHHCCCCCEEEEecC--------------CCCCCCC---------CCHHHHHHHH
Confidence 56788999872 2345678888888888888888653 2345666 2445555556
Q ss_pred HHHHHHHH
Q 031886 136 FHQGKYVA 143 (151)
Q Consensus 136 ~~lG~~la 143 (151)
.+..+.+.
T Consensus 57 ~~~~~~L~ 64 (261)
T PRK00865 57 LEIVEFLL 64 (261)
T ss_pred HHHHHHHH
Confidence 55555554
No 81
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=41.53 E-value=38 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 70 (151)
..-++||.+|+.-++ +-.|...++++... .-+=|.+.++|++...+
T Consensus 71 ~sPR~ADillVeG~V-----T~~m~~~l~~~~e~----~p~pK~VIAvGaCA~~G 116 (181)
T PRK14817 71 FSPRQADLLMVVGTV-----NCKQAPILQRVYEQ----MADPKWVMAFGVCASSG 116 (181)
T ss_pred CCCcceeEEEEEecC-----CccchHHHHHHHHH----cccCCEEEEeccccccC
Confidence 345778988887665 55566667776542 45668888999886643
No 82
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=40.80 E-value=62 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC
Q 031886 17 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 70 (151)
.=++||.+|+. |.++-+|+..+.++... .-+=|.+.++|++...+
T Consensus 70 sPR~ADvllVt-----G~VT~~m~~~l~~~yeq----mp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 70 SPRQADMILVL-----GTITYKMAPVLRQIYDQ----MAEPKFVISVGACASSG 114 (186)
T ss_pred CcccceEEEEe-----ccCchhhHHHHHHHHHh----cCCCCeEEEeccccccC
Confidence 34578888875 44566777777777642 34568888899886644
No 83
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=40.13 E-value=1e+02 Score=24.80 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 41 AFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 41 ~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.|++.+....-.+.|.||.++++..-+. .......+.+.+...|..+.+
T Consensus 67 ~f~~~~~~~lv~g~L~g~~V~vV~~p~a----~~~~~~~v~~~L~~AGA~v~g 115 (308)
T PF11382_consen 67 QFIAAVAPRLVAGRLTGRSVAVVTLPGA----DDEDVDAVRELLEQAGATVTG 115 (308)
T ss_pred HHHHHHHHHHhcCccCCCEEEEEEcCCC----ChHHHHHHHHHHHHCCCeEEE
Confidence 3444444433457899999999996432 223467888888888988875
No 84
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=39.75 E-value=73 Score=23.88 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=31.5
Q ss_pred HhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc
Q 031886 18 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g 71 (151)
=++||.+++. |.++-+|+..+.++... .-+=|.+.++|++...+|
T Consensus 71 PR~ADillVt-----G~VT~~m~~~l~r~ye~----~p~pK~VIAvGsCA~~GG 115 (183)
T PRK14815 71 PRQADVMIVA-----GTVTYKMALAVRRIYDQ----MPEPKWVIAMGACASSGG 115 (183)
T ss_pred CccccEEEEe-----CcCchhhHHHHHHHHHh----CCCCCEEEEeccccccCC
Confidence 4568888875 45577777777777643 456688999999866443
No 85
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=39.72 E-value=30 Score=27.07 Aligned_cols=39 Identities=18% Similarity=-0.096 Sum_probs=24.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
++++.++|.|||.||+ -++.|+..+.. ..+.+.+++++|
T Consensus 64 l~~l~~~d~iiftS~N-------AV~~~~~~~~~----~~~~~~~~~AVG 102 (266)
T PRK08811 64 LRQALAAPIVVFTSPA-------AVRAAHRLLPL----QRPARAHWLSVG 102 (266)
T ss_pred HhhcccCCEEEEECHH-------HHHHHHHHhcc----cCccCCeEEEEC
Confidence 5677899999999987 34455432211 234555555554
No 86
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=39.48 E-value=44 Score=24.96 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=26.5
Q ss_pred cCCCCcEEEEEccCCCCccHHHHHHHHHHHHH-hcCcEEe
Q 031886 54 ALAGKPAGIFWSTGFHGGGQELTALTAVTQLA-HHGMLFV 92 (151)
Q Consensus 54 ~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~-~~g~~~v 92 (151)
.+-++++++||++|+ |...++..+...+. ..+..++
T Consensus 20 ~l~~~H~~I~G~TGs---GKS~~~~~ll~~l~~~~~~~~i 56 (229)
T PF01935_consen 20 KLFNRHIAIFGTTGS---GKSNTVKVLLEELLKKKGAKVI 56 (229)
T ss_pred HhccceEEEECCCCC---CHHHHHHHHHHHHHhcCCCCEE
Confidence 566789999998753 67777888888877 6665544
No 87
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.33 E-value=18 Score=28.88 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 175 ~~~DGlIVSTPT 186 (287)
T PRK14077 175 YFGDGVIVATPA 186 (287)
T ss_pred EEcCEEEEeCCC
Confidence 369999999999
No 88
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=38.32 E-value=78 Score=24.51 Aligned_cols=44 Identities=14% Similarity=-0.036 Sum_probs=28.6
Q ss_pred HHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC
Q 031886 17 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 69 (151)
.=++||.+|+.-|+ +-.|+..+.++... .-.=|.+.++|++...
T Consensus 68 SPRhADvliVtG~V-----T~km~~~L~rlyeq----mPePK~VIA~GaCA~s 111 (225)
T CHL00023 68 SPRQADLILTAGTV-----TMKMAPSLVRLYEQ----MPEPKYVIAMGACTIT 111 (225)
T ss_pred CcccceEEEEecCC-----ccccHHHHHHHHHh----cCCCCeEEEEcccccc
Confidence 34668888886554 55566666665532 3455888899987554
No 89
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=38.25 E-value=58 Score=23.98 Aligned_cols=42 Identities=36% Similarity=0.398 Sum_probs=26.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
...+..+|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 44 ~~~~~~~~~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 85 (239)
T cd06578 44 LADLDEYDWLIFTSPN-------AVEAFFEALEELG-LRALAGLKIAAVG 85 (239)
T ss_pred HHhcCCCCEEEEECHH-------HHHHHHHHHHhhC-CccccCCEEEEEC
Confidence 4455679999999995 5667776665321 1235666666665
No 90
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=38.06 E-value=1.2e+02 Score=23.93 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCC
Q 031886 57 GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 95 (151)
Q Consensus 57 gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g 95 (151)
++...++.--|+.+.|...+++.+...|.-.|+.+...+
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~ 91 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFK 91 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCC
Confidence 443444555577677788889999999998899888653
No 91
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.01 E-value=91 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.6
Q ss_pred cCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 54 ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 54 ~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
-.+|+.++++|+.| .|+.+.++.+.+++..-|-+.|+
T Consensus 375 I~kGekVaIvG~nG---sGKSTilr~LlrF~d~sG~I~Id 411 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNG---SGKSTILRLLLRFFDYSGSILID 411 (591)
T ss_pred ecCCCEEEEECCCC---CCHHHHHHHHHHHhccCCcEEEC
Confidence 35899999999754 46888899999999988888886
No 92
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.74 E-value=17 Score=28.81 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 156 ~~~DGlIVsTPT 167 (271)
T PRK01185 156 FKADGVIVATPT 167 (271)
T ss_pred EEeeEEEEeCCC
Confidence 479999999999
No 93
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=36.63 E-value=58 Score=25.86 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=24.6
Q ss_pred ccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccC
Q 031886 28 FPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTG 67 (151)
Q Consensus 28 sPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g 67 (151)
.|.+.......++.|+++-. .++|+..++++|+|
T Consensus 7 ~p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGG 40 (302)
T KOG2728|consen 7 VPESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGG 40 (302)
T ss_pred CcccccchhHHHHHHHHHHh------hccCceEEEEecCC
Confidence 36777888888999999865 45666666666544
No 94
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.36 E-value=20 Score=28.95 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
-.+||||++|||
T Consensus 179 ~~~DGlIVsTPT 190 (305)
T PRK02649 179 IAADGVILSTPT 190 (305)
T ss_pred EecCeEEEeCCC
Confidence 479999999998
No 95
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=36.35 E-value=1.3e+02 Score=20.75 Aligned_cols=62 Identities=21% Similarity=0.098 Sum_probs=32.1
Q ss_pred EeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 23 GFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 23 ~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
.||+|++.+..+.+...+.=++.-..++. +|+.--++.|+|...+....-...+.+.+..+|
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~g 64 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELG 64 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcC
Confidence 58899999977777555555555444432 222333344433322211122356666666665
No 96
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=36.16 E-value=30 Score=29.63 Aligned_cols=44 Identities=5% Similarity=0.046 Sum_probs=31.4
Q ss_pred CChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh-hccCCCCcEEEEE
Q 031886 13 IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFW 64 (151)
Q Consensus 13 ~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~-~~~l~gK~~~~f~ 64 (151)
..++++.++|-|||.||. -++.|++++..... -+.|. ...+++|
T Consensus 293 ~~l~~l~~ydwlvFTS~n-------gV~~Ff~~l~~~~~D~R~l~-~kiaavG 337 (474)
T PRK07168 293 EQINEIFNVNRLVFCSAE-------SVEILMQSCSKYKKDIRSLQ-AELQHMN 337 (474)
T ss_pred HHHHHhccCCEEEEcCHH-------HHHHHHHHHHHcCCChHHhC-CEEEEEC
Confidence 337889999999999997 78999999875321 23555 3444455
No 97
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.00 E-value=17 Score=29.05 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
-.+||||++|||
T Consensus 174 ~~~DGlIVsTPT 185 (292)
T PRK01911 174 YWADGLIVATPT 185 (292)
T ss_pred EeeceeEECCCC
Confidence 369999999999
No 98
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.00 E-value=20 Score=28.87 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 183 ~~~DGlIVsTPT 194 (306)
T PRK03372 183 FGCDGVLVSTPT 194 (306)
T ss_pred EecCEEEEeCCC
Confidence 368999999999
No 99
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=35.08 E-value=66 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=25.9
Q ss_pred hHHH--hhCCEeEEecc-ccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQL--KEADGFLFGFP-SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l--~~aD~iIlgsP-tY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
++++ .++|+|++..- .+.......++.|+.+.. -++|+++.+++
T Consensus 53 ~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~ 99 (170)
T cd03140 53 LDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICG 99 (170)
T ss_pred hhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEECh
Confidence 4444 67898776543 333334566777777764 24566665554
No 100
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=34.73 E-value=84 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=27.9
Q ss_pred hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc
Q 031886 19 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 19 ~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g 71 (151)
++||.+|+.-|+ +-.|...+.++.. .--+=|.+.++|++...+|
T Consensus 66 R~ADvllVtG~V-----t~km~~~l~~~y~----qmPePK~VIA~GaCA~sGG 109 (189)
T PRK14813 66 RQSDLMIVAGTV-----TMKMAERVVRLYE----QMPEPRYVLSMGSCSNCGG 109 (189)
T ss_pred ccceEEEEeccC-----chhhHHHHHHHHH----hCCCCCEEEEecccccCCC
Confidence 458888876554 5555555555543 1345688999999865444
No 101
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.69 E-value=22 Score=28.04 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 147 ~~~DGlIVsTPt 158 (264)
T PRK03501 147 FRGDGMVVSTPT 158 (264)
T ss_pred EecCEEEEeCCC
Confidence 369999999998
No 102
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.66 E-value=23 Score=27.98 Aligned_cols=12 Identities=25% Similarity=0.467 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 146 ~~gDGlIVsTpt 157 (265)
T PRK04885 146 FRGDGLCVSTPT 157 (265)
T ss_pred EEcCEEEEECCC
Confidence 479999999998
No 103
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.45 E-value=22 Score=28.49 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.0
Q ss_pred hhCCEeEEeccc----cCCcchHH
Q 031886 19 KEADGFLFGFPS----RFGVMAAQ 38 (151)
Q Consensus 19 ~~aD~iIlgsPt----Y~~~~~~~ 38 (151)
..+||||++||| |+.+.-++
T Consensus 177 ~~gDGlIVsTPtGSTAYslSAGGP 200 (305)
T PRK02645 177 YQGDGLIVSTPTGSTAYTMAAGGP 200 (305)
T ss_pred EecCEEEEecCCChhhhhhhcCCc
Confidence 379999999999 65555443
No 104
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.42 E-value=21 Score=28.10 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
-.+||||++|||
T Consensus 135 ~~gDGlIVsTPt 146 (259)
T PRK00561 135 YRGSGLLIGPRT 146 (259)
T ss_pred EecCEEEEeCch
Confidence 479999999998
No 105
>PRK06487 glycerate dehydrogenase; Provisional
Probab=34.35 E-value=1.8e+02 Score=23.28 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=46.9
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH-----HHHHHHHhh--------hhhhh-----------ccCCCCcEEEEEc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ-----CKAFFDATY--------ELWAS-----------QALAGKPAGIFWS 65 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~-----~K~flDrl~--------~~~~~-----------~~l~gK~~~~f~s 65 (151)
++.++.+.+.+....|.-+|.|+...-++ |-++..++. ..|.. ..+.||+++++|.
T Consensus 77 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~ 156 (317)
T PRK06487 77 TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGH 156 (317)
T ss_pred ccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECC
Confidence 34556778888888888889988554333 222222221 12321 2589999999996
Q ss_pred cCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 66 TGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 66 ~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
|.. | +.+.+.+..+||.++.
T Consensus 157 -G~I--G-----~~vA~~l~~fgm~V~~ 176 (317)
T PRK06487 157 -GEL--G-----GAVARLAEAFGMRVLI 176 (317)
T ss_pred -CHH--H-----HHHHHHHhhCCCEEEE
Confidence 221 2 4556667788999885
No 106
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.89 E-value=23 Score=28.43 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=10.5
Q ss_pred hCCEeEEeccc
Q 031886 20 EADGFLFGFPS 30 (151)
Q Consensus 20 ~aD~iIlgsPt 30 (151)
.+||+|++|||
T Consensus 180 ~~DGlIVsTPT 190 (296)
T PRK04539 180 RSDGLIVSTPT 190 (296)
T ss_pred ecCeEEEECCC
Confidence 69999999999
No 107
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.86 E-value=24 Score=27.62 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 144 ~~~DG~ivsTpt 155 (256)
T PRK14075 144 FFADGVVISTPT 155 (256)
T ss_pred EecCEEEEeCCC
Confidence 479999999999
No 108
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.76 E-value=23 Score=28.04 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=10.5
Q ss_pred hCCEeEEeccc
Q 031886 20 EADGFLFGFPS 30 (151)
Q Consensus 20 ~aD~iIlgsPt 30 (151)
.+||||++|||
T Consensus 155 ~~DGlIVsTPt 165 (272)
T PRK02231 155 RSDGLIISTPT 165 (272)
T ss_pred ecCeEEEECCC
Confidence 79999999999
No 109
>PRK06932 glycerate dehydrogenase; Provisional
Probab=33.72 E-value=1.8e+02 Score=23.31 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHH-----HHHHHh--------hhhhhh-----------ccCCCCcEEEEEc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCK-----AFFDAT--------YELWAS-----------QALAGKPAGIFWS 65 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K-----~flDrl--------~~~~~~-----------~~l~gK~~~~f~s 65 (151)
++.++.+.+.+....|.-+|.|+...-+++- ++.-++ ...|.. ..++||+++++|.
T Consensus 76 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~ 155 (314)
T PRK06932 76 TNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGK 155 (314)
T ss_pred ccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECC
Confidence 4445567777778888889998866544331 111111 112321 2589999999996
Q ss_pred cCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 66 TGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 66 ~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
|.. | +.+.+.+..+||.++.
T Consensus 156 -G~I--G-----~~va~~l~~fg~~V~~ 175 (314)
T PRK06932 156 -GCL--G-----TEVGRLAQALGMKVLY 175 (314)
T ss_pred -CHH--H-----HHHHHHHhcCCCEEEE
Confidence 221 2 3555666788999885
No 110
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.38 E-value=23 Score=28.34 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 173 ~~~DGlivsTpt 184 (295)
T PRK01231 173 QRSDGLIVSTPT 184 (295)
T ss_pred EEcceEEEeCCC
Confidence 479999999999
No 111
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.01 E-value=60 Score=27.41 Aligned_cols=46 Identities=20% Similarity=0.041 Sum_probs=34.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEcc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 66 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~ 66 (151)
.+.+++||.+|.|.=.++.+.++. +.|+-.+. ..+.||++.+++.+
T Consensus 112 ~~~l~~aDlvI~gGG~lfqD~y~~-~~~~y~l~-----A~l~gkpv~l~gqs 157 (426)
T PRK10017 112 VRLLSGYDAIIQVGGSFFVDLYGV-PQFEHALC-----AFMAKKPLYMIGHS 157 (426)
T ss_pred HHHHHhCCEEEECCCCccccCccc-HHHHHHHH-----HHHcCCCEEEECCc
Confidence 567999999999998888877664 34443222 25789999988874
No 112
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=32.98 E-value=64 Score=28.86 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=26.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
+.++.++|.|||.||+ -++.|++.+...| +.+.+++++|
T Consensus 50 l~~L~~yd~iIFTS~n-------AV~~~~~~l~~~~----~~~~~i~AVG 88 (656)
T PRK06975 50 LARLSDYALVVFVSPN-------AVDRALARLDAIW----PHALPVAVVG 88 (656)
T ss_pred HHhCCCCCEEEEECHH-------HHHHHHHHHHhhC----ccCCeEEEEC
Confidence 4677899999999998 5666777765432 2344555554
No 113
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=32.69 E-value=72 Score=23.88 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=28.2
Q ss_pred HhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc
Q 031886 18 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g 71 (151)
=++||.+|+.-++ +-+++..+.++... .-+=|.+.++|++...+|
T Consensus 72 Pr~aDvllV~G~v-----t~~~~~~l~~~~e~----mp~pk~VIA~GaCA~~GG 116 (183)
T PRK06411 72 PRQADLMIVAGTL-----TNKMAPALRRLYDQ----MPEPKWVISMGSCANSGG 116 (183)
T ss_pred CCceeEEEEEeCC-----CccchHHHHHHHHH----cCcCCeEEEEecccccCC
Confidence 3558988887666 33345555555431 345688999999866443
No 114
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.68 E-value=2.3e+02 Score=22.53 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHH
Q 031886 56 AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQA 135 (151)
Q Consensus 56 ~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a 135 (151)
..++.++|=|+ . |.-..+.++...|-...+.+++.. ..-+||. .+.++-++..
T Consensus 4 ~~~~IgvFDSG--V--GGLsVlrei~~~LP~e~~iY~~D~--------------a~~PYG~---------ks~e~I~~~~ 56 (269)
T COG0796 4 PQPPIGVFDSG--V--GGLSVLREIRRQLPDEDIIYVGDT--------------ARFPYGE---------KSEEEIRERT 56 (269)
T ss_pred cCCeEEEEECC--C--CcHHHHHHHHHHCCCCcEEEEecC--------------CCCCCCC---------CCHHHHHHHH
Confidence 45788899872 2 345578999999988889988753 2345666 2445556666
Q ss_pred HHHHHHHHH
Q 031886 136 FHQGKYVAE 144 (151)
Q Consensus 136 ~~lG~~la~ 144 (151)
.++.+.+.+
T Consensus 57 ~~i~~~l~~ 65 (269)
T COG0796 57 LEIVDFLLE 65 (269)
T ss_pred HHHHHHHHH
Confidence 666665543
No 115
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=24 Score=28.75 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCCCCCCCCCChHHHhhCCEeEEeccccCCcch
Q 031886 4 PPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMA 36 (151)
Q Consensus 4 ~~~~~~~~~~~~~~l~~aD~iIlgsPtY~~~~~ 36 (151)
|++..-.+++ ++.|++||.||+|--..+-++-
T Consensus 174 ~~~~~a~~ea-veAI~~AD~IviGPgSl~TSIl 205 (323)
T COG0391 174 PEKPSAAPEA-VEAIKEADLIVIGPGSLFTSIL 205 (323)
T ss_pred CCCCCCCHHH-HHHHHhCCEEEEcCCccHhhhc
Confidence 4444445556 9999999999999777665553
No 116
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.52 E-value=25 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=14.7
Q ss_pred hhCCEeEEeccc----cCCcchHH
Q 031886 19 KEADGFLFGFPS----RFGVMAAQ 38 (151)
Q Consensus 19 ~~aD~iIlgsPt----Y~~~~~~~ 38 (151)
..+||||++||| |+.+.-++
T Consensus 163 ~~gDGvIvsTptGSTAY~lSaGGp 186 (277)
T PRK03708 163 VRADGLIISTPTGSTAYAMSAGGP 186 (277)
T ss_pred EecCEEEEeCCCchHHHHhhCCCc
Confidence 479999999998 55444443
No 117
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=31.82 E-value=27 Score=27.30 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=14.2
Q ss_pred hCCEeEEeccc----cCCcchHH
Q 031886 20 EADGFLFGFPS----RFGVMAAQ 38 (151)
Q Consensus 20 ~aD~iIlgsPt----Y~~~~~~~ 38 (151)
.+||||++||| |+.+.-++
T Consensus 133 ~gDGlIVSTPtGSTAY~lSAGGP 155 (246)
T PRK04761 133 VCDGVLVATPAGSTAYNLSAHGP 155 (246)
T ss_pred ecCeEEEeCCcCHHHHHhhCCCc
Confidence 69999999999 55444443
No 118
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=31.79 E-value=25 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=15.3
Q ss_pred hhCCEeEEeccc----cCCcchHHH
Q 031886 19 KEADGFLFGFPS----RFGVMAAQC 39 (151)
Q Consensus 19 ~~aD~iIlgsPt----Y~~~~~~~~ 39 (151)
..+||||++||| |+.+.-+++
T Consensus 174 ~~gDGlIVsTPtGSTAYslSaGGPI 198 (291)
T PRK02155 174 QRSDGLIVATPTGSTAYALSAGGPI 198 (291)
T ss_pred EecCeEEEECCCchhhhhhhcCCcc
Confidence 479999999998 555544433
No 119
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=31.53 E-value=2.4e+02 Score=23.65 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=47.1
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH-HHHHHHHhhh------------hhh-----hccCCCCcEEEEEccCCCCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ-CKAFFDATYE------------LWA-----SQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~-~K~flDrl~~------------~~~-----~~~l~gK~~~~f~s~g~~~g 71 (151)
++.+++..-.+.-.+|+-+|+|+.--.+. .-.+|-.|.+ .|. ...+.||..+++|.. .-|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~G--rIG 158 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLG--RIG 158 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecc--cch
Confidence 34556677778889999999997543332 2233333321 122 236899999999972 222
Q ss_pred cHHHHHHHHHHHHHhcCcEEecC
Q 031886 72 GQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 72 ~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
. +....+..+||.+|..
T Consensus 159 s------eVA~r~k~~gm~vI~~ 175 (406)
T KOG0068|consen 159 S------EVAVRAKAMGMHVIGY 175 (406)
T ss_pred H------HHHHHHHhcCceEEee
Confidence 2 3444556789988853
No 120
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=31.47 E-value=2.4e+02 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=20.6
Q ss_pred hHHHhhC--CEeEEeccccCCcchHHHHHHHHHhh
Q 031886 15 PHQLKEA--DGFLFGFPSRFGVMAAQCKAFFDATY 47 (151)
Q Consensus 15 ~~~l~~a--D~iIlgsPtY~~~~~~~~K~flDrl~ 47 (151)
.+++.++ |+|++|..+..-. ..+..++.++.
T Consensus 20 ~~~~~~~gtdai~vGGS~~vt~--~~~~~~v~~ik 52 (223)
T TIGR01768 20 AKAAAESGTDAILIGGSQGVTY--EKTDTLIEALR 52 (223)
T ss_pred HHHHHhcCCCEEEEcCCCcccH--HHHHHHHHHHh
Confidence 5666666 9999999884322 25566666664
No 121
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=31.06 E-value=2.3e+02 Score=22.91 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=46.3
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHH-----HHHHHhh--------hhhh--------hccCCCCcEEEEEccCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCK-----AFFDATY--------ELWA--------SQALAGKPAGIFWSTGF 68 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K-----~flDrl~--------~~~~--------~~~l~gK~~~~f~s~g~ 68 (151)
++.++++...+....|..+|.|+...-+.+- ...-++. ..|. ...+.||.++++|. |.
T Consensus 77 ~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~-G~ 155 (323)
T PRK15409 77 YDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM-GR 155 (323)
T ss_pred cccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc-cH
Confidence 3455678888888899999998776544332 1111111 1232 12589999999996 22
Q ss_pred CCccHHHHHHHHHHHHH-hcCcEEec
Q 031886 69 HGGGQELTALTAVTQLA-HHGMLFVP 93 (151)
Q Consensus 69 ~~g~~~~~l~~~~~~l~-~~g~~~v~ 93 (151)
. | +.+.+.+. .+||.++.
T Consensus 156 I--G-----~~va~~l~~~fgm~V~~ 174 (323)
T PRK15409 156 I--G-----MALAQRAHFGFNMPILY 174 (323)
T ss_pred H--H-----HHHHHHHHhcCCCEEEE
Confidence 1 1 34445555 78998774
No 122
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=31.01 E-value=3.1e+02 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 123 GSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 123 ~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
+...-+|+.+++|.+|+++....+
T Consensus 166 ~~~~A~ee~i~~~~el~~~~~~~~ 189 (341)
T TIGR01724 166 GKEMATEEQISKCVELAKSTGKKA 189 (341)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCe
Confidence 345679999999999999876544
No 123
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=30.96 E-value=1.1e+02 Score=22.96 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=30.3
Q ss_pred HhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc
Q 031886 18 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g 71 (151)
=++||.+|+.- .++-.|+..+.++... .-+=|.+.++|++...+|
T Consensus 79 PRhADvllVtG-----~VT~~m~~~l~~~~e~----~p~pK~VIAvGsCA~~GG 123 (182)
T PRK14816 79 PRQADMIMVCG-----TITNKMAPVLKRLYDQ----MADPKYVIAVGGCAVSGG 123 (182)
T ss_pred CCcceEEEEec-----CCcchhHHHHHHHHHh----cCCCCEEEEeccccccCC
Confidence 35688887754 4566777777776542 356688999999866543
No 124
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=30.94 E-value=1.5e+02 Score=20.79 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
..+.+||++|+.--.-...-....+.++..+.. ...+.++++.++++
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~N 108 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLAN 108 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEe
Confidence 457889999986322121122233444554432 23467899998887
No 125
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.85 E-value=2.5e+02 Score=23.17 Aligned_cols=67 Identities=7% Similarity=-0.110 Sum_probs=44.9
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
....|.+-||-|-++.+.-+.++++.+.....+..-..+.+.++|.. . .+. +.++...|..+|+.++
T Consensus 118 ~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~-~--~~d---~~el~~lL~~~Gi~v~ 184 (396)
T cd01979 118 GVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSL-P--DIV---EDQLRRELEQLGIPVV 184 (396)
T ss_pred CCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeC-C--cch---HHHHHHHHHHcCCeEE
Confidence 46788888888888776677777777665432223344556677763 2 121 5778888889999886
No 126
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.40 E-value=2.5e+02 Score=22.77 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=46.7
Q ss_pred hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhh----ccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 19 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWAS----QALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 19 ~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~----~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.....+.+-+|-|-++...-....+..+...+.. ..-+.+.+-+++.... .. .-+.++.+.|..+|+.+..
T Consensus 110 ~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~--~~--~d~~el~~ll~~~G~~v~~ 184 (399)
T cd00316 110 IGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNL--GG--GDLRELKRLLEEMGIRVNA 184 (399)
T ss_pred hCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCC--ch--hhHHHHHHHHHHcCCcEEE
Confidence 4678999999998877776666666666554432 2345566777776422 11 2357888888888988763
No 127
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.30 E-value=2.1e+02 Score=23.92 Aligned_cols=73 Identities=10% Similarity=-0.065 Sum_probs=41.3
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhc--cCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQ--ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~--~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..+.|.+-||-|-++...-....++.+...+... .-..+.+-+++.+.........-+.++.+.|..+|+.+.
T Consensus 116 ~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~ 190 (427)
T cd01971 116 GAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVN 190 (427)
T ss_pred CCCEEEEECCCcCcccccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEE
Confidence 4679999999998877555555555544322111 123345666764311111001125788888888898874
No 128
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=29.80 E-value=2.7e+02 Score=23.23 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=43.5
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhcc--CCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQA--LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~--l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
....|.+-||-|-++...-....+..+...+.... -+.+.+-+++.+-. ..+ .+.++.+.|..+|+.++.
T Consensus 116 ~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~-~~~---d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 116 DFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPL-TPG---DVREIKRILEAFGLEPII 187 (428)
T ss_pred CCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCC-Ccc---CHHHHHHHHHHcCCCEEE
Confidence 45677888999988777666666666654332221 33445666653211 112 257888888889988764
No 129
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.51 E-value=2.2e+02 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhh
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 48 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~ 48 (151)
+.+..+|.||++.|.+ .+..+++++..
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~~ 99 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELAK 99 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHHh
Confidence 3477899999999965 67777777764
No 130
>PLN02928 oxidoreductase family protein
Probab=29.46 E-value=3.1e+02 Score=22.32 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=44.1
Q ss_pred CCCCChHHHhhCCEeEEeccccCC-cchH-------HHHHHHHHhh--------hhhh---hccCCCCcEEEEEccCCCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFG-VMAA-------QCKAFFDATY--------ELWA---SQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~-~~~~-------~~K~flDrl~--------~~~~---~~~l~gK~~~~f~s~g~~~ 70 (151)
++.++.+.+.+....|.-+|.|.. +..+ .+-.++-++. ..|. ...+.||+++++|. |..
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~-G~I- 170 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGY-GAI- 170 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECC-CHH-
Confidence 344567778888888888887632 1111 1111111111 1121 13689999999996 221
Q ss_pred ccHHHHHHHHHHHHHhcCcEEecC
Q 031886 71 GGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 71 g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
| +.+...+..+||.++..
T Consensus 171 -G-----~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 171 -G-----IELAKRLRPFGVKLLAT 188 (347)
T ss_pred -H-----HHHHHHHhhCCCEEEEE
Confidence 1 45566677889998853
No 131
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=28.81 E-value=2.2e+02 Score=23.12 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh-----hccCCCCcEEEEEccCCCCcc
Q 031886 11 PVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA-----SQALAGKPAGIFWSTGFHGGG 72 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~-----~~~l~gK~~~~f~s~g~~~g~ 72 (151)
+.++.+...+.-.+|.-+|..+...-+.+ -.+..++. ..|. ...+.||+++++|. |.. |
T Consensus 78 d~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~-G~I--G 154 (324)
T COG0111 78 DNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGL-GRI--G 154 (324)
T ss_pred cccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECC-CHH--H
Confidence 44455666666778888888774432221 12211111 1232 12678999999996 221 1
Q ss_pred HHHHHHHHHHHHHhcCcEEecC
Q 031886 73 QELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 73 ~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
..+...+..+||.++..
T Consensus 155 -----~~va~~l~afgm~v~~~ 171 (324)
T COG0111 155 -----RAVAKRLKAFGMKVIGY 171 (324)
T ss_pred -----HHHHHHHHhCCCeEEEE
Confidence 45666778899999963
No 132
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=28.79 E-value=2.7e+02 Score=23.64 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=42.6
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhh----ccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWAS----QALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~----~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
....|.+-||-|.++...-+...+..+...+.. ..-..+.+-+++.+-.+.+. +.++.+.|..+|+.++
T Consensus 127 ~~pvi~v~tpgF~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D----~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 127 DTPIVYVSTPDFKGALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGD----IEELREIIEAFGLEPI 199 (455)
T ss_pred CCeEEEecCCCCCCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCccc----HHHHHHHHHHcCCceE
Confidence 346888899999887766666666555432211 22344556666532122222 5788888889999875
No 133
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=27.84 E-value=2.6e+02 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCC
Q 031886 56 AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 95 (151)
Q Consensus 56 ~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g 95 (151)
.++++ ++.--|+.+.|...++..+...|.-.|+.+...+
T Consensus 28 ~~~~v-lIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~ 66 (230)
T TIGR03707 28 TGARV-VIVFEGRDAAGKGGTIKRITEHLNPRGARVVALP 66 (230)
T ss_pred cCCCE-EEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCC
Confidence 34444 3444467667788889999999988888888653
No 134
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=27.60 E-value=2e+02 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHhcCcEEecC
Q 031886 72 GQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 72 ~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
+....+..+.+.++..|+.+++.
T Consensus 50 gDd~lL~av~~~le~~G~~vv~~ 72 (214)
T PF06230_consen 50 GDDALLRAVIDELEKEGFKVVGA 72 (214)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcH
Confidence 35567899999999999999975
No 135
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.23 E-value=89 Score=23.15 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=11.9
Q ss_pred hHHHhhCCEeEEecc
Q 031886 15 PHQLKEADGFLFGFP 29 (151)
Q Consensus 15 ~~~l~~aD~iIlgsP 29 (151)
.+++.++|+||++-+
T Consensus 33 ~~~~~~~d~iii~G~ 47 (200)
T PRK13143 33 PEEILDADGIVLPGV 47 (200)
T ss_pred HHHHccCCEEEECCC
Confidence 456789999999774
No 136
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=27.18 E-value=34 Score=28.72 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=11.4
Q ss_pred HhhCCEeEEeccc
Q 031886 18 LKEADGFLFGFPS 30 (151)
Q Consensus 18 l~~aD~iIlgsPt 30 (151)
-.++||+|++|||
T Consensus 283 ~vq~DGliVaTPT 295 (409)
T KOG2178|consen 283 KVQGDGLIVATPT 295 (409)
T ss_pred EEecceEEEecCC
Confidence 3579999999999
No 137
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.98 E-value=3.6e+02 Score=22.33 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=47.8
Q ss_pred CCCCCCChHHHh---hCCEeEEeccccCCcchHHHHHHHHHhhhhhhh----ccCCCCcEEEEEccCCCCccHHHHHHHH
Q 031886 8 NDVPVIRPHQLK---EADGFLFGFPSRFGVMAAQCKAFFDATYELWAS----QALAGKPAGIFWSTGFHGGGQELTALTA 80 (151)
Q Consensus 8 ~~~~~~~~~~l~---~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~----~~l~gK~~~~f~s~g~~~g~~~~~l~~~ 80 (151)
+|++.+ .+++. ....|.+-||-|.++...-....++.+...+.. ..-..+.+-+++.... .+. +.++
T Consensus 103 dDi~~v-~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d----~~el 176 (410)
T cd01968 103 DDIDAV-CKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-AGE----LWGV 176 (410)
T ss_pred cCHHHH-HHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-ccc----HHHH
Confidence 344444 44443 467888889999887666666666665543321 1112566777776433 222 4678
Q ss_pred HHHHHhcCcEEe
Q 031886 81 VTQLAHHGMLFV 92 (151)
Q Consensus 81 ~~~l~~~g~~~v 92 (151)
.+.|..+|+.++
T Consensus 177 ~~lL~~~Gl~v~ 188 (410)
T cd01968 177 KPLLEKLGIRVL 188 (410)
T ss_pred HHHHHHcCCeEE
Confidence 888888898876
No 138
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=26.81 E-value=1.5e+02 Score=20.02 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=29.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
...+..+|++|+.-..-...-...+..|++.+... ...+.+..++++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~n 113 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGN 113 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEE
Confidence 44567799999886664433334455566665432 225788888887
No 139
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=26.39 E-value=2.3e+02 Score=19.66 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=40.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
...+.++|++|+.-..-...-...++.|+..+... ...+.++.++++=--.........+.........++.++.
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFME 145 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEE
Confidence 44567889999977665444455666677666432 2356777777763111101111233444444555666553
No 140
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.05 E-value=37 Score=27.16 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||+|++|||
T Consensus 174 ~~~DGlIvsTpt 185 (292)
T PRK03378 174 QRSDGLIISTPT 185 (292)
T ss_pred EEccEEEEeCCC
Confidence 479999999998
No 141
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=25.97 E-value=2.9e+02 Score=22.94 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=40.4
Q ss_pred CCEeEEeccccCCcc-hHH----HHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 21 ADGFLFGFPSRFGVM-AAQ----CKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 21 aD~iIlgsPtY~~~~-~~~----~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
...|.+-||-|.+.. ..- ++++++.+........-..+.+-+++..-+ .+. +.++.+.|..+|+.++
T Consensus 121 ~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d----~~ei~~lL~~~Gl~v~ 192 (415)
T cd01977 121 VDIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGD----TEVLQKYFERMGIQVL 192 (415)
T ss_pred CeEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-ccc----HHHHHHHHHHcCCeEE
Confidence 668888899998743 322 345666654321112223466777775432 222 4678888888999886
No 142
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.96 E-value=1.5e+02 Score=23.01 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=31.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEcc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 66 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~ 66 (151)
.+.+.++|.+|+|.=.++...++ .+.++-.+.-. .-..+.||++.+++.+
T Consensus 59 ~~~l~~~D~vI~gGG~l~~d~~~-~~~~~~~~~~~-~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 59 LRALRRADVVIWGGGSLLQDVTS-FRSLLYYLGLM-RLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHHHCCEEEECCcccccCCcc-cccHHHHHHHH-HHHHHcCCCEEEEecc
Confidence 56799999999999888776542 33333221100 0024568999888874
No 143
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=25.95 E-value=1.5e+02 Score=20.89 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=23.0
Q ss_pred HhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 18 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+.+||++|+..- ..-+..+....+.+..+.....+.+.++.++++
T Consensus 78 ~~~ad~ii~v~D---~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 78 YTNTQGLIFVVD---SNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred hCCCCEEEEEEE---CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 678999988533 222222333233322221122356678888886
No 144
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=25.88 E-value=2.5e+02 Score=23.44 Aligned_cols=77 Identities=17% Similarity=0.099 Sum_probs=46.2
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh-----hccCCCCcEEEEEccCCCCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA-----SQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~-----~~~l~gK~~~~f~s~g~~~g 71 (151)
++.++.+...+....|.-+|.|+..--+.+ -.+.-++. ..|. ...|.||+++++|. |..
T Consensus 86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~-G~I-- 162 (409)
T PRK11790 86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGY-GHI-- 162 (409)
T ss_pred cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECC-CHH--
Confidence 344567778887778888898876543322 11111111 1232 13689999999996 221
Q ss_pred cHHHHHHHHHHHHHhcCcEEecC
Q 031886 72 GQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 72 ~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
| ..+.+.+..+||.++..
T Consensus 163 G-----~~vA~~~~~fGm~V~~~ 180 (409)
T PRK11790 163 G-----TQLSVLAESLGMRVYFY 180 (409)
T ss_pred H-----HHHHHHHHHCCCEEEEE
Confidence 1 35556667889998853
No 145
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.87 E-value=2.6e+02 Score=23.81 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=42.9
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
....|-+-||-|-++...-+...+..+...+....-....+-+++.+ ...+ -+.++.+.|..+|+.++
T Consensus 132 ~~~ii~v~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~--~~~~---D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 132 EVHLIPIHTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGW--VNPG---DVKELKHLLEEMDIEAN 199 (461)
T ss_pred CCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCC--CChh---hHHHHHHHHHHcCCceE
Confidence 35678899999988887777777766654322111122335556542 2222 36788888889998876
No 146
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.67 E-value=1.5e+02 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=15.3
Q ss_pred cEEEEEccC--CCCccHHHHHHHHHHHHHhcCcE
Q 031886 59 PAGIFWSTG--FHGGGQELTALTAVTQLAHHGML 90 (151)
Q Consensus 59 ~~~~f~s~g--~~~g~~~~~l~~~~~~l~~~g~~ 90 (151)
.++++|+-| +..||.|+..+++...+...|..
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~ 36 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGID 36 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCce
Confidence 444555543 22345555555555555444443
No 147
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=25.58 E-value=1.1e+02 Score=21.95 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=27.3
Q ss_pred hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC
Q 031886 19 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 19 ~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 70 (151)
++||.+++.-|+ +-+++..+.++.. ..-+=|.+.++|++...+
T Consensus 56 r~aDvllVtG~v-----t~~~~~~l~~~~e----~~p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 56 RQADVMIVAGTV-----TKKMAPALRRLYD----QMPEPKWVISMGACANSG 98 (145)
T ss_pred CcceEEEEecCC-----cHHHHHHHHHHHH----hccCCceEEEecceeecC
Confidence 458888876544 5555666666543 134568888999886543
No 148
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.13 E-value=3.2e+02 Score=22.93 Aligned_cols=69 Identities=10% Similarity=-0.006 Sum_probs=43.8
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhc-c--CCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQ-A--LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~-~--l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
....|.+-||-|-++...-+..+++.+...+... . -..+.+-+++. +...+. .+.++.+.|..+|+.++
T Consensus 120 ~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~--~~~~~d--~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 120 DFPVPFANTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPG--FDTYAG--NMREIKRLLELMGVDYT 191 (435)
T ss_pred CCeEEEecCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECC--CCCCcc--hHHHHHHHHHHcCCCEE
Confidence 3678888999998888878777777776533211 1 22334555542 211111 36788888888998876
No 149
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.93 E-value=1.5e+02 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=23.8
Q ss_pred ccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCC
Q 031886 53 QALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 96 (151)
Q Consensus 53 ~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~ 96 (151)
..|+||++++++. +. .. ..+...+..+||.++..+.
T Consensus 331 ~~L~GKrv~i~~g--~~--~~----~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 331 PRLEGKTVMLYVG--GL--RP----RHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HhcCCCEEEEECC--CC--cH----HHHHHHHHHCCCEEEEEee
Confidence 5799999988873 11 11 2333357789999996554
No 150
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=24.75 E-value=37 Score=29.47 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 378 ~rgDGLIVSTPT 389 (508)
T PLN02935 378 VQGDGLILSTTS 389 (508)
T ss_pred EECCcEEEecCc
Confidence 479999999998
No 151
>PLN00223 ADP-ribosylation factor; Provisional
Probab=23.96 E-value=1.9e+02 Score=20.76 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=25.0
Q ss_pred HhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 18 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 18 l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+.++|++|+.--.- -...+....+.+........+.+.+..++++
T Consensus 82 ~~~a~~iI~V~D~s---~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 82 FQNTQGLIFVVDSN---DRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred hccCCEEEEEEeCC---cHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 67889998854432 2233433333333222223456788888887
No 152
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=23.90 E-value=98 Score=23.44 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=22.2
Q ss_pred HHHhh--CCEeEEeccccC-CcchHHHHHHHHHhh
Q 031886 16 HQLKE--ADGFLFGFPSRF-GVMAAQCKAFFDATY 47 (151)
Q Consensus 16 ~~l~~--aD~iIlgsPtY~-~~~~~~~K~flDrl~ 47 (151)
+...+ ||.+|+|+|.+. -++...++.+...+.
T Consensus 178 ~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~ 212 (216)
T PRK13306 178 KLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIA 212 (216)
T ss_pred HHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHH
Confidence 34455 899999999874 556666666666653
No 153
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=23.76 E-value=3.5e+02 Score=21.02 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=38.8
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHH---HHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFF---DATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~fl---Drl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
+.+.++|.||+..|.. ..++.++ +.+.. ....|+.+ ...++. ...+.+.+.+.+...|..++
T Consensus 48 ~~~~~advVil~vp~~-----~~~~~v~~g~~~l~~----~~~~g~~v---id~st~---~p~~~~~~~~~~~~~g~~~v 112 (288)
T TIGR01692 48 EAAEGADRVITMLPAG-----QHVISVYSGDEGILP----KVAKGSLL---IDCSTI---DPDSARKLAELAAAHGAVFM 112 (288)
T ss_pred HHHhcCCEEEEeCCCh-----HHHHHHHcCcchHhh----cCCCCCEE---EECCCC---CHHHHHHHHHHHHHcCCcEE
Confidence 4577899999999983 2445555 33321 11234433 222221 22345677777888899998
Q ss_pred cCCCC
Q 031886 93 PLGYT 97 (151)
Q Consensus 93 ~~g~~ 97 (151)
+.++.
T Consensus 113 daPv~ 117 (288)
T TIGR01692 113 DAPVS 117 (288)
T ss_pred ECCCC
Confidence 76543
No 154
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.69 E-value=2.3e+02 Score=22.63 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCcEEecCC
Q 031886 73 QELTALTAVTQLAHHGMLFVPLG 95 (151)
Q Consensus 73 ~~~~l~~~~~~l~~~g~~~v~~g 95 (151)
.+..+..+.++++..|+.+++.-
T Consensus 108 DDaLLk~vi~~~E~~GfKvigah 130 (279)
T COG3494 108 DDALLKAVIDFIESRGFKVIGAH 130 (279)
T ss_pred cHHHHHHHHHHHHhcCcEEecHh
Confidence 56778999999999999999853
No 155
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=23.10 E-value=3.9e+02 Score=21.29 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=42.9
Q ss_pred hHHHhhC---CEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEE
Q 031886 15 PHQLKEA---DGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLF 91 (151)
Q Consensus 15 ~~~l~~a---D~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~ 91 (151)
++++.+. |..|+..|- ..+...++++.. +|=+.+++.+.|. .+...+.+.+....+|+.+
T Consensus 55 v~dlp~~~~~Dlavi~vpa------~~v~~~l~e~~~-------~Gvk~avIis~Gf----~e~~~~~l~~~a~~~giri 117 (286)
T TIGR01019 55 VKEAVEETGANASVIFVPA------PFAADAIFEAID-------AGIELIVCITEGI----PVHDMLKVKRYMEESGTRL 117 (286)
T ss_pred HHHHhhccCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCC----CHHHHHHHHHHHHHcCCEE
Confidence 6666664 999999883 556666666542 4444555555442 2223467888888999999
Q ss_pred ecCCC
Q 031886 92 VPLGY 96 (151)
Q Consensus 92 v~~g~ 96 (151)
+|++.
T Consensus 118 lGPNc 122 (286)
T TIGR01019 118 IGPNC 122 (286)
T ss_pred ECCCC
Confidence 99764
No 156
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=23.03 E-value=1.2e+02 Score=23.96 Aligned_cols=44 Identities=14% Similarity=-0.057 Sum_probs=24.8
Q ss_pred hHHHhhCCEeEEecc-ccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFP-SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsP-tY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
++++.++|.||+... .........+..||.+.. -++|.++.+++
T Consensus 70 ~~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~ 114 (322)
T PRK09393 70 LELLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICS 114 (322)
T ss_pred ccccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcH
Confidence 445678999998442 111223555666665542 35666666655
No 157
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=22.87 E-value=2e+02 Score=19.82 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=29.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
...+..+|++|+.-..-...-...++.+++.+.. ...++++.++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~n 112 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVAN 112 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEE
Confidence 4557889999997665443333445667766642 235678888887
No 158
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=22.71 E-value=3.5e+02 Score=22.97 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=40.1
Q ss_pred CCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 21 ADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 21 aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
...|-+.||-|-++...-+..+++.+...+....-..+.+-+++. +...+ -+.++.+.|..+|+.+.
T Consensus 126 ~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~--~~~~~---D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 126 VHLIPVHTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTG--WVNPG---DVVELKHYLSEMDVEAN 192 (454)
T ss_pred CeEEEeeCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECC--CCChH---HHHHHHHHHHHcCCCEE
Confidence 567778899999877666655555554322111112234555643 22222 36788888888898876
No 159
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=22.68 E-value=1.6e+02 Score=22.20 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=19.4
Q ss_pred HhhCCEeEEec---cccCCcchHHHHHHHHHhh
Q 031886 18 LKEADGFLFGF---PSRFGVMAAQCKAFFDATY 47 (151)
Q Consensus 18 l~~aD~iIlgs---PtY~~~~~~~~K~flDrl~ 47 (151)
..++|+|++.. |.+...-...+..|+.+..
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~ 120 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFY 120 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHH
Confidence 44799998864 3344445666777776653
No 160
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=22.59 E-value=1.1e+02 Score=24.25 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 031886 126 QPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 126 ~p~e~~l~~a~~lG~~la~~~ 146 (151)
...++..+.++++|+++.+.+
T Consensus 99 ~tteecveiske~gkrvgeel 119 (302)
T COG3643 99 TTTEECVEISKELGKRVGEEL 119 (302)
T ss_pred ccHHHHHHHHHHHHHHhhHhh
Confidence 457888888999999988753
No 161
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=22.56 E-value=4.1e+02 Score=21.34 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 031886 126 QPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 126 ~p~e~~l~~a~~lG~~la~~~~ 147 (151)
.|+..|...|..+|..-++.+.
T Consensus 256 ~ps~~Dr~~a~~lG~~Av~~~~ 277 (301)
T TIGR02482 256 SPTAFDRVLASRLGAKAVELLL 277 (301)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999887664
No 162
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=22.48 E-value=1.1e+02 Score=23.28 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=26.1
Q ss_pred hhCCEeEEeccccC-CcchHHHHHHHHHhhhhh
Q 031886 19 KEADGFLFGFPSRF-GVMAAQCKAFFDATYELW 50 (151)
Q Consensus 19 ~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~ 50 (151)
...|.||+|.|.+- -++....+.+.+.+...|
T Consensus 183 ~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~~~ 215 (218)
T PRK13305 183 IRVKAFIAGRALAGAANPAQVAADFHAQIDAIW 215 (218)
T ss_pred cCCCEEEECCcccCCCCHHHHHHHHHHHHHHhh
Confidence 44599999999994 777888999999886644
No 163
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=22.45 E-value=1.9e+02 Score=19.69 Aligned_cols=46 Identities=7% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEcc
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 66 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~ 66 (151)
..+.++|++|+....-...-...++.+++.+... -.+.++.++++-
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK 116 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTA-----SKHMPGVLVGNK 116 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEC
Confidence 4567799999887665444445566777766532 246777777763
No 164
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=22.39 E-value=55 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=20.2
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHH
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQC 39 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~ 39 (151)
-.+.+ ++.|.+||.||+|--..+-++-+.+
T Consensus 173 ~~p~~-l~AI~~AD~IiigPgs~~TSI~P~L 202 (300)
T PF01933_consen 173 ANPEA-LEAIEEADLIIIGPGSLYTSIIPNL 202 (300)
T ss_dssp B-HHH-HHHHHH-SEEEE-SS-CCCCCHHHH
T ss_pred CCHHH-HHHHHhCCEEEEcCCCchhhhcccc
Confidence 33445 8899999999999888888875543
No 165
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=22.08 E-value=4.3e+02 Score=22.07 Aligned_cols=67 Identities=7% Similarity=-0.092 Sum_probs=40.8
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
....|.+-||-|-++...-+.+++..+.....+..-..+.+-++|.. + .+. ..++.+.|..+|+.++
T Consensus 129 ~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~-~--~~d---~~el~~lL~~~Gi~v~ 195 (427)
T PRK02842 129 GVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSL-A--DVV---EDQLTLEFKKLGIGVV 195 (427)
T ss_pred CCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeC-C--cch---HHHHHHHHHHcCCeeE
Confidence 34577777888887755555666666554322223344556677764 1 222 3678888888898864
No 166
>PLN02929 NADH kinase
Probab=21.89 E-value=47 Score=26.80 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 194 ~~~DGliVsTpT 205 (301)
T PLN02929 194 VRSSGLRVSTAA 205 (301)
T ss_pred eecCcEEEeCCc
Confidence 478999999999
No 167
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=21.83 E-value=61 Score=26.90 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCCCCCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhh
Q 031886 4 PPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 48 (151)
Q Consensus 4 ~~~~~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~ 48 (151)
||-.--++++ .+.+++||.+|++-|.-| +..+++.+..
T Consensus 90 P~NvvAv~dl-~ea~~dADilvf~vPhQf------~~~ic~~l~g 127 (372)
T KOG2711|consen 90 PENVVAVPDL-VEAAKDADILVFVVPHQF------IPRICEQLKG 127 (372)
T ss_pred CCCeEecchH-HHHhccCCEEEEeCChhh------HHHHHHHHhc
Confidence 4444445556 788999999999999632 3445555544
No 168
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=21.75 E-value=50 Score=26.64 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ 38 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~ 38 (151)
.+++ ++.|.+||.||+|--..+-++-+.
T Consensus 173 ~pea-l~AI~~AD~IIlGPgsp~TSI~P~ 200 (297)
T TIGR01819 173 APKV-LEAIRKEDNILIGPSNPITSIGPI 200 (297)
T ss_pred CHHH-HHHHHhCCEEEECCCccHHHhhhh
Confidence 3444 889999999999977766655443
No 169
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=21.73 E-value=2e+02 Score=20.02 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
..++++|++|+....-...-....+.++..+.. ...++++++.++++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~N 108 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFAN 108 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEe
Confidence 457889999998665433323445555555542 12456678888887
No 170
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=21.43 E-value=2.6e+02 Score=21.12 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=32.7
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 70 (151)
|-.+....-++||.+|+. |.++-.|-..+-++.. .-..=|.+..+|++...+
T Consensus 65 fG~~~r~SPRQaDvmIva-----Gt~t~Kmap~lr~~Yd----QMPePK~VIsMGsCa~~G 116 (194)
T COG0377 65 FGEVPRASPRQADLMIVA-----GTLTNKMAPALRRVYD----QMPEPKWVISMGSCANSG 116 (194)
T ss_pred hCcCCCCCcccccEEEEe-----ccchHHHHHHHHHHHH----hCCCCcEEEEecccccCC
Confidence 333334456789988875 4555666666665553 234558888999986543
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.42 E-value=3.6e+02 Score=21.22 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 33 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 33 ~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.++-.+-+.+++-+..+ ++|+++--+-.+|.++-|+...+..+...+...|..+|..
T Consensus 30 ~Gie~Qk~~l~~Nt~~F-----l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev 86 (249)
T PF05673_consen 30 IGIERQKEALIENTEQF-----LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEV 86 (249)
T ss_pred cCHHHHHHHHHHHHHHH-----HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEE
Confidence 34556666666666543 6777766666666666678888888888888888887753
No 172
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=21.28 E-value=1.2e+02 Score=21.54 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=24.2
Q ss_pred hHH--HhhCCEeEEeccc---cCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQ--LKEADGFLFGFPS---RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~--l~~aD~iIlgsPt---Y~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+++ ..++|+||+.... +.....+.+..|+.+.. -++|+++.+++
T Consensus 56 ~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~~ic~ 104 (179)
T TIGR01383 56 LEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQE-------SKGKLVAAICA 104 (179)
T ss_pred HHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHH-------HCCCEEEEECh
Confidence 444 5679999986532 11122445666665553 35566665554
No 173
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=21.15 E-value=4e+02 Score=23.17 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=40.8
Q ss_pred hCCEeEEeccccCC-cchH----HHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 20 EADGFLFGFPSRFG-VMAA----QCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 20 ~aD~iIlgsPtY~~-~~~~----~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
....|-+-||-|-+ ..++ .++++++.+.....+..-....+-+++.+ .+.|. +.++...|..+|+.++.
T Consensus 160 ~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~-n~~gD----~~eik~lLe~~Gl~v~~ 233 (513)
T TIGR01861 160 DVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEY-NIQGD----QEVMVDYFQRMGIQVLS 233 (513)
T ss_pred CCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCC-CCccC----HHHHHHHHHHCCCeEEE
Confidence 35688889999987 3333 47777877653211111112234466654 22233 46788888899998873
No 174
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=21.15 E-value=1.9e+02 Score=20.71 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 17 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
.+..+|++|+.--.....-....+..++++.. ...+.++++.++++
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~N 126 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGN 126 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEe
Confidence 36789999987554332223344555555432 23467888888887
No 175
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=21.00 E-value=1.5e+02 Score=20.46 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=27.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
...++++|++|+.-..-...-...++.++..+... .-.+.+..++++
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~n 116 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGN 116 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 45678899999986653333333445555554321 234567777775
No 176
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=20.84 E-value=1.7e+02 Score=19.99 Aligned_cols=51 Identities=8% Similarity=-0.062 Sum_probs=28.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
..-++++|++|+--......-...+..|.+.+..........+++..++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 445677999888765544333344555555543221112344778887776
No 177
>PRK13243 glyoxylate reductase; Reviewed
Probab=20.71 E-value=4.6e+02 Score=21.17 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=46.2
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh------------hccCCCCcEEEEE
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA------------SQALAGKPAGIFW 64 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~------------~~~l~gK~~~~f~ 64 (151)
++.++.+.+.+-...|.-+|.|+...-+.+ -.+..++. ..|. ...+.||.++++|
T Consensus 78 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG 157 (333)
T PRK13243 78 YDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIG 157 (333)
T ss_pred ccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEEC
Confidence 345667888888889999999875543332 11111111 1232 1358999999999
Q ss_pred ccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 65 STGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 65 s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
. |.. | ..+...+..+||.++.
T Consensus 158 ~-G~I--G-----~~vA~~l~~~G~~V~~ 178 (333)
T PRK13243 158 F-GRI--G-----QAVARRAKGFGMRILY 178 (333)
T ss_pred c-CHH--H-----HHHHHHHHHCCCEEEE
Confidence 6 221 1 3555666678898774
No 178
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.57 E-value=4e+02 Score=22.30 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=42.2
Q ss_pred hCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 20 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 20 ~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
....|-+-||-|-++...-....++.+...+....-+.+.+-+++.+ ...+ -+.++.+.+..+|+.++
T Consensus 118 ~~~vi~v~t~gF~g~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~--~~~~---D~~ei~~lL~~~Gl~~~ 185 (429)
T cd03466 118 EPKIIPASTPGYGGTHVEGYDTAVRSIVKNIAVDPDKIEKINVIAGM--MSPA---DIREIKEILREFGIEYI 185 (429)
T ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHHHHhccCCCCCCcEEEECCC--CChh---HHHHHHHHHHHcCCCeE
Confidence 35677777999988877677666666654322222223445555532 1212 26788888899999875
No 179
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=20.54 E-value=3.9e+02 Score=21.61 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=45.3
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------h--hhh----hccCCCCcEEEEEccCCCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------E--LWA----SQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~--~~~----~~~l~gK~~~~f~s~g~~~ 70 (151)
++.++++...+....|..+|.|+...-+++ -.+.-++. . .|. ...++||+++++|. |..
T Consensus 80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~-G~I- 157 (330)
T PRK12480 80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGT-GRI- 157 (330)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECC-CHH-
Confidence 344557777888888888999876653332 22222221 0 121 13689999998886 222
Q ss_pred ccHHHHHHHHHHHHHhcCcEEec
Q 031886 71 GGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 71 g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
| ..+...+..+||.++.
T Consensus 158 G------~~vA~~L~~~G~~V~~ 174 (330)
T PRK12480 158 G------AATAKIYAGFGATITA 174 (330)
T ss_pred H------HHHHHHHHhCCCEEEE
Confidence 1 3444555678888875
No 180
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=20.51 E-value=3.1e+02 Score=19.07 Aligned_cols=46 Identities=7% Similarity=-0.038 Sum_probs=30.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
...+..+|++|+.--.-...-...++.|+..+... ..+.++.++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piiiv~n 112 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CGNIPIVLCGN 112 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEE
Confidence 34567799999876655444445567777777542 23788877776
No 181
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=20.30 E-value=1.4e+02 Score=22.16 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=26.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhh
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 47 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~ 47 (151)
.+-+..||.+| |--.|+.++-+.+--||||+.
T Consensus 117 ~evye~aDynl-gvg~qpHSvrAAlAI~LDRL~ 148 (176)
T PRK03958 117 REVYELADWNV-AVGNQPHSEVAALAVFLDRLF 148 (176)
T ss_pred HHHHhhCCEEe-ccCCCChHHHHHHHHHHHHhc
Confidence 45567788877 777788899999999999985
Done!