Query 031886
Match_columns 151
No_of_seqs 145 out of 1685
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7n_A Flavodoxin, WRBA-like p 99.9 1.4E-24 4.7E-29 161.3 11.7 143 9-151 43-189 (193)
2 3b6i_A Flavoprotein WRBA; flav 99.9 2.6E-23 8.9E-28 153.7 15.2 136 14-151 62-198 (198)
3 2a5l_A Trp repressor binding p 99.9 5.1E-23 1.7E-27 152.4 15.4 135 14-151 65-200 (200)
4 2zki_A 199AA long hypothetical 99.9 1.2E-22 4E-27 150.6 13.8 132 15-151 65-196 (199)
5 1ydg_A Trp repressor binding p 99.9 2E-22 6.9E-27 150.8 14.3 131 13-150 71-201 (211)
6 2ark_A Flavodoxin; FMN, struct 99.8 4.1E-20 1.4E-24 136.4 13.0 126 10-150 42-169 (188)
7 2q62_A ARSH; alpha/beta, flavo 99.7 3.9E-17 1.3E-21 125.9 12.1 119 15-150 93-212 (247)
8 3hly_A Flavodoxin-like domain; 99.7 1.4E-16 4.8E-21 115.0 12.9 100 16-150 47-146 (161)
9 3fni_A Putative diflavin flavo 99.7 1.1E-16 3.8E-21 115.5 12.3 100 15-149 51-150 (159)
10 2fzv_A Putative arsenical resi 99.7 7.7E-17 2.6E-21 126.2 12.0 119 15-150 118-237 (279)
11 4hs4_A Chromate reductase; tri 99.7 4.4E-16 1.5E-20 116.3 14.7 119 15-150 68-188 (199)
12 3svl_A Protein YIEF; E. coli C 99.7 1.9E-16 6.6E-21 117.7 12.6 119 15-150 67-187 (193)
13 1sqs_A Conserved hypothetical 99.7 2.2E-17 7.4E-22 126.2 7.2 112 8-148 68-179 (242)
14 1rtt_A Conserved hypothetical 99.7 3.4E-16 1.2E-20 115.5 11.3 118 15-149 67-185 (193)
15 3fvw_A Putative NAD(P)H-depend 99.7 4.2E-17 1.4E-21 121.0 6.2 118 15-149 62-185 (192)
16 3gfs_A FMN-dependent NADPH-azo 99.7 1.9E-16 6.4E-21 115.2 9.3 112 15-148 58-169 (174)
17 5nul_A Flavodoxin; electron tr 99.7 1.8E-16 6.1E-21 111.0 8.1 102 9-144 34-137 (138)
18 3u7r_A NADPH-dependent FMN red 99.7 1.8E-15 6E-20 112.4 13.8 119 15-149 62-181 (190)
19 1rli_A Trp repressor binding p 99.7 8.6E-18 3E-22 122.6 1.0 110 15-144 66-183 (184)
20 3k1y_A Oxidoreductase; structu 99.6 7.3E-16 2.5E-20 114.6 8.1 115 9-150 75-190 (191)
21 2vzf_A NADH-dependent FMN redu 99.6 7.2E-16 2.5E-20 114.4 7.5 114 15-149 64-178 (197)
22 2q9u_A A-type flavoprotein; fl 99.6 3.7E-15 1.3E-19 121.2 11.5 102 16-150 303-407 (414)
23 3s2y_A Chromate reductase; ura 99.4 9.4E-17 3.2E-21 119.9 0.0 125 8-150 62-188 (199)
24 2fz5_A Flavodoxin; alpha/beta 99.6 3.9E-15 1.3E-19 103.5 7.8 100 9-144 35-136 (137)
25 2ohh_A Type A flavoprotein FPR 99.6 7.1E-15 2.4E-19 118.8 9.3 102 15-147 302-403 (404)
26 2hpv_A FMN-dependent NADH-azor 99.5 1.4E-14 4.7E-19 107.8 8.5 109 15-144 89-206 (208)
27 4dik_A Flavoprotein; TM0755, e 99.5 7.6E-15 2.6E-19 120.4 7.1 95 15-142 314-408 (410)
28 3f6r_A Flavodoxin; FMN binding 99.5 9.3E-15 3.2E-19 103.3 6.3 106 10-145 38-147 (148)
29 1t5b_A Acyl carrier protein ph 99.5 2.2E-14 7.4E-19 105.7 6.7 79 15-93 81-170 (201)
30 1t0i_A YLR011WP; FMN binding p 99.5 7.1E-14 2.4E-18 102.7 8.2 71 15-93 79-149 (191)
31 1ycg_A Nitric oxide reductase; 99.5 1E-13 3.5E-18 111.8 9.4 100 15-147 297-397 (398)
32 1f4p_A Flavodoxin; electron tr 99.5 2.7E-14 9.2E-19 100.7 5.1 102 14-145 41-146 (147)
33 1e5d_A Rubredoxin\:oxygen oxid 99.5 2.7E-13 9.2E-18 109.4 11.2 102 15-149 298-399 (402)
34 3r6w_A FMN-dependent NADH-azor 99.4 7.5E-13 2.6E-17 99.0 9.7 79 15-93 82-180 (212)
35 3f2v_A General stress protein 99.4 4.9E-12 1.7E-16 93.9 11.4 86 8-94 47-147 (192)
36 3u7i_A FMN-dependent NADH-azor 99.4 2.4E-12 8.1E-17 97.6 9.5 109 15-146 89-213 (223)
37 1czn_A Flavodoxin; FMN binding 99.4 4.5E-12 1.5E-16 91.3 10.3 126 13-146 39-167 (169)
38 3p0r_A Azoreductase; structura 99.4 8.9E-13 3E-17 99.0 6.8 78 15-92 87-178 (211)
39 2amj_A Modulator of drug activ 99.4 1.4E-12 4.9E-17 97.4 7.8 85 9-94 60-176 (204)
40 3lcm_A SMU.1420, putative oxid 99.3 1.7E-12 5.8E-17 96.3 6.7 79 15-93 68-159 (196)
41 1obo_A Flavodoxin; electron tr 99.3 1.4E-11 4.7E-16 88.7 11.1 127 12-146 38-167 (169)
42 3ha2_A NADPH-quinone reductase 99.3 5.9E-12 2E-16 92.4 8.5 86 8-94 40-139 (177)
43 3l9w_A Glutathione-regulated p 99.3 8.4E-12 2.9E-16 102.4 9.4 117 8-148 281-410 (413)
44 1yob_A Flavodoxin 2, flavodoxi 99.3 4.7E-11 1.6E-15 87.1 10.9 129 9-145 35-174 (179)
45 1ag9_A Flavodoxin; electron tr 99.3 8.4E-11 2.9E-15 85.4 12.0 126 13-146 38-167 (175)
46 1d4a_A DT-diaphorase, quinone 99.2 1E-11 3.4E-16 96.7 6.4 55 15-69 88-151 (273)
47 2fcr_A Flavodoxin; electron tr 99.2 7.7E-11 2.6E-15 85.4 10.0 125 14-146 39-171 (173)
48 2wc1_A Flavodoxin; electron tr 99.2 3.9E-11 1.4E-15 87.6 8.4 131 9-147 36-177 (182)
49 3tem_A Ribosyldihydronicotinam 99.2 1.5E-10 5.2E-15 87.9 10.1 55 15-69 87-150 (228)
50 3rpe_A MDAB, modulator of drug 99.2 5.7E-11 2E-15 89.8 7.5 80 15-94 78-189 (218)
51 1ykg_A SIR-FP, sulfite reducta 99.1 7.6E-11 2.6E-15 85.1 7.0 109 10-148 46-155 (167)
52 3klb_A Putative flavoprotein; 99.1 2.4E-10 8.2E-15 82.2 6.9 67 15-92 73-139 (162)
53 4ici_A Putative flavoprotein; 99.0 5.1E-10 1.7E-14 81.3 7.7 67 15-92 82-148 (171)
54 3edo_A Flavoprotein, putative 99.0 1.6E-10 5.6E-15 82.1 4.8 67 15-92 71-137 (151)
55 2hna_A Protein MIOC, flavodoxi 99.0 2E-11 6.9E-16 86.1 -2.2 105 15-146 41-146 (147)
56 2bmv_A Flavodoxin; electron tr 98.9 1.7E-09 6E-14 77.4 6.6 125 11-145 35-162 (164)
57 4gi5_A Quinone reductase; prot 98.9 4.7E-09 1.6E-13 82.0 8.1 55 15-69 107-178 (280)
58 1bvy_F Protein (cytochrome P45 98.8 4.2E-09 1.4E-13 77.9 4.6 103 16-147 63-167 (191)
59 2xod_A NRDI protein, NRDI; fla 98.6 1.1E-07 3.9E-12 64.6 7.4 85 20-144 32-118 (119)
60 2bpo_A CPR, P450R, NADPH-cytoc 98.4 1.1E-06 3.9E-11 76.0 9.0 114 8-148 85-200 (682)
61 3hr4_A Nitric oxide synthase, 98.3 1.1E-06 3.6E-11 66.4 6.8 84 9-94 75-159 (219)
62 1tll_A Nitric-oxide synthase, 97.7 0.00011 3.7E-09 63.7 8.8 113 9-148 46-199 (688)
63 3qe2_A CPR, P450R, NADPH--cyto 97.7 6.6E-05 2.3E-09 64.3 7.2 72 20-93 70-142 (618)
64 3n3a_C Protein NRDI; ribonucle 97.0 0.0004 1.4E-08 49.4 2.7 89 17-144 55-150 (153)
65 1rlj_A NRDI protein; flavoprot 96.9 0.0014 4.8E-08 45.7 5.2 87 18-144 41-129 (139)
66 3oet_A Erythronate-4-phosphate 60.8 14 0.00048 29.6 5.3 75 10-93 72-147 (381)
67 1oth_A Protein (ornithine tran 59.4 49 0.0017 25.8 8.1 59 27-92 123-183 (321)
68 1ml4_A Aspartate transcarbamoy 55.2 34 0.0012 26.5 6.5 61 27-92 122-185 (308)
69 2b0j_A 5,10-methenyltetrahydro 54.3 40 0.0014 26.4 6.6 97 15-144 136-236 (358)
70 3exr_A RMPD (hexulose-6-phosph 51.6 9.2 0.00031 28.0 2.6 36 15-50 182-220 (221)
71 3mw8_A Uroporphyrinogen-III sy 47.5 16 0.00055 26.5 3.4 38 15-64 45-82 (240)
72 4ekn_B Aspartate carbamoyltran 46.6 57 0.0019 25.2 6.5 60 28-92 119-182 (306)
73 3re1_A Uroporphyrinogen-III sy 46.1 17 0.00058 27.0 3.4 41 15-64 61-101 (269)
74 4es6_A Uroporphyrinogen-III sy 45.9 17 0.00057 26.7 3.3 41 15-64 53-93 (254)
75 2o4c_A Erythronate-4-phosphate 43.3 33 0.0011 27.3 4.8 75 10-93 69-144 (380)
76 2m1z_A LMO0427 protein; homolo 42.5 17 0.00058 23.7 2.5 37 12-65 49-85 (106)
77 4amu_A Ornithine carbamoyltran 38.1 1.2E+02 0.0039 24.1 7.2 59 28-92 149-209 (365)
78 1f35_A Olfactory marker protei 37.8 23 0.00078 24.3 2.6 17 132-148 118-134 (162)
79 2yfk_A Aspartate/ornithine car 37.5 1.6E+02 0.0055 23.7 9.9 56 37-92 165-223 (418)
80 3p9z_A Uroporphyrinogen III co 37.4 8.2 0.00028 28.1 0.4 42 16-64 33-74 (229)
81 3pfn_A NAD kinase; structural 36.9 13 0.00044 29.6 1.5 12 19-30 245-256 (365)
82 2kyr_A Fructose-like phosphotr 34.8 26 0.0009 23.0 2.5 37 12-65 52-88 (111)
83 2r48_A Phosphotransferase syst 34.0 28 0.00096 22.7 2.5 36 12-65 49-84 (106)
84 3efe_A THIJ/PFPI family protei 33.7 24 0.00082 25.2 2.4 44 15-65 67-113 (212)
85 2bcg_Y Protein YP2, GTP-bindin 33.6 1.1E+02 0.0036 20.8 5.8 53 9-65 69-121 (206)
86 3csu_A Protein (aspartate carb 32.9 1.2E+02 0.0042 23.3 6.5 60 28-92 122-185 (310)
87 3cpt_A Mitogen-activated prote 31.6 29 0.001 23.9 2.4 20 30-49 15-34 (143)
88 2r4q_A Phosphotransferase syst 31.5 28 0.00094 22.7 2.2 36 12-65 49-84 (106)
89 3pdi_A Nitrogenase MOFE cofact 31.4 1.2E+02 0.0042 24.6 6.6 37 53-97 328-364 (483)
90 1z0s_A Probable inorganic poly 31.1 15 0.00052 28.1 1.0 12 19-30 171-182 (278)
91 3ist_A Glutamate racemase; str 31.0 1.6E+02 0.0056 21.9 6.9 35 56-94 4-38 (269)
92 1pg5_A Aspartate carbamoyltran 30.5 75 0.0026 24.4 4.8 61 27-92 116-180 (299)
93 2gf9_A RAS-related protein RAB 30.2 1E+02 0.0035 20.5 5.2 80 10-93 84-163 (189)
94 3q98_A Transcarbamylase; rossm 29.7 2.1E+02 0.0074 22.8 10.0 55 38-92 169-226 (399)
95 3gd5_A Otcase, ornithine carba 28.4 2.1E+02 0.0071 22.2 8.5 48 38-92 138-185 (323)
96 2q7x_A UPF0052 protein SP_1565 27.3 40 0.0014 26.3 2.8 29 10-39 175-203 (326)
97 3k96_A Glycerol-3-phosphate de 27.2 1.9E+02 0.0065 22.4 6.8 27 16-48 95-121 (356)
98 2fg5_A RAB-22B, RAS-related pr 27.1 1.3E+02 0.0045 20.1 5.4 77 13-93 88-164 (192)
99 3dcm_X AdoMet, uncharacterized 27.0 42 0.0014 24.2 2.7 35 14-48 147-185 (192)
100 3r7f_A Aspartate carbamoyltran 27.0 1.1E+02 0.0039 23.5 5.3 60 28-92 115-177 (304)
101 2b6h_A ADP-ribosylation factor 26.7 1.5E+02 0.005 20.0 5.5 53 10-65 86-138 (192)
102 3tw8_B RAS-related protein RAB 26.6 92 0.0032 20.3 4.4 50 11-65 72-121 (181)
103 4fs3_A Enoyl-[acyl-carrier-pro 26.1 69 0.0023 23.3 3.9 36 54-94 3-38 (256)
104 2ppv_A Uncharacterized protein 25.8 38 0.0013 26.6 2.4 28 11-39 169-196 (332)
105 2p0y_A Hypothetical protein LP 25.7 33 0.0011 27.0 2.0 29 10-39 179-207 (341)
106 2gcg_A Glyoxylate reductase/hy 25.5 1.2E+02 0.0042 23.1 5.3 76 10-93 87-183 (330)
107 3evt_A Phosphoglycerate dehydr 25.3 74 0.0025 24.5 4.0 76 10-93 72-165 (324)
108 3afo_A NADH kinase POS5; alpha 24.9 19 0.00066 28.8 0.6 12 19-30 227-238 (388)
109 3l0i_B RAS-related protein RAB 24.9 99 0.0034 20.9 4.4 52 10-65 95-146 (199)
110 2i6u_A Otcase, ornithine carba 24.3 2.4E+02 0.0082 21.6 9.4 59 28-92 117-177 (307)
111 1z0f_A RAB14, member RAS oncog 24.2 1.5E+02 0.0051 19.1 5.6 75 15-93 82-156 (179)
112 4g2n_A D-isomer specific 2-hyd 24.1 1.6E+02 0.0055 22.8 5.8 77 10-94 105-202 (345)
113 1z0j_A RAB-22, RAS-related pro 24.0 1.2E+02 0.0043 19.3 4.6 47 15-65 73-119 (170)
114 3dz8_A RAS-related protein RAB 23.8 1.6E+02 0.0055 19.6 5.3 74 16-93 91-164 (191)
115 1q6o_A Humps, 3-keto-L-gulonat 23.6 44 0.0015 23.8 2.3 27 21-47 185-212 (216)
116 3oes_A GTPase rhebl1; small GT 23.5 1.7E+02 0.0059 19.7 5.4 54 9-65 84-137 (201)
117 1qv9_A F420-dependent methylen 23.5 1.9E+02 0.0066 21.8 5.7 39 17-65 61-99 (283)
118 1vlv_A Otcase, ornithine carba 23.5 2.6E+02 0.0089 21.6 8.5 59 28-92 136-196 (325)
119 3cpj_B GTP-binding protein YPT 23.4 1.8E+02 0.0062 20.0 5.6 80 10-93 75-154 (223)
120 2oil_A CATX-8, RAS-related pro 23.1 1.5E+02 0.0052 19.6 5.0 80 10-93 87-166 (193)
121 2ekl_A D-3-phosphoglycerate de 23.0 1.8E+02 0.0061 22.1 5.8 76 10-93 79-170 (313)
122 1sc6_A PGDH, D-3-phosphoglycer 22.9 1.7E+02 0.0057 23.3 5.8 76 10-93 80-173 (404)
123 3tkl_A RAS-related protein RAB 22.9 1.7E+02 0.0058 19.3 5.8 50 12-65 80-129 (196)
124 3i9v_6 NADH-quinone oxidoreduc 22.8 29 0.001 24.9 1.1 43 19-70 73-115 (181)
125 4adb_A Succinylornithine trans 22.5 2.5E+02 0.0085 21.1 7.1 67 21-92 128-221 (406)
126 4ep1_A Otcase, ornithine carba 22.4 2.8E+02 0.0096 21.6 9.2 57 29-92 149-207 (340)
127 2dbq_A Glyoxylate reductase; D 22.2 2.2E+02 0.0074 21.7 6.2 76 10-93 78-178 (334)
128 1ky3_A GTP-binding protein YPT 22.0 81 0.0028 20.6 3.3 51 15-65 76-126 (182)
129 2a5j_A RAS-related protein RAB 21.9 1.4E+02 0.0046 20.0 4.6 79 11-93 84-162 (191)
130 2w2k_A D-mandelate dehydrogena 21.8 2.2E+02 0.0074 21.9 6.2 76 10-93 91-192 (348)
131 3cit_A Sensor histidine kinase 21.8 1.5E+02 0.005 20.6 4.6 39 109-147 107-146 (160)
132 2fu5_C RAS-related protein RAB 21.6 1.8E+02 0.006 19.0 5.4 75 15-93 75-149 (183)
133 1zbd_A Rabphilin-3A; G protein 21.5 1.3E+02 0.0046 20.2 4.5 74 16-93 76-149 (203)
134 3ezx_A MMCP 1, monomethylamine 21.5 2.3E+02 0.0077 20.2 8.1 59 37-98 69-130 (215)
135 4e15_A Kynurenine formamidase; 21.3 2E+02 0.0069 20.6 5.7 42 57-98 81-122 (303)
136 3sds_A Ornithine carbamoyltran 21.2 3E+02 0.01 21.6 7.1 58 28-92 144-216 (353)
137 2o2z_A Hypothetical protein; s 21.0 49 0.0017 25.8 2.2 28 11-39 170-197 (323)
138 4a8t_A Putrescine carbamoyltra 20.8 3E+02 0.01 21.4 7.9 58 28-92 141-203 (339)
139 4e5n_A Thermostable phosphite 20.7 90 0.0031 24.0 3.7 77 10-94 78-174 (330)
140 3doj_A AT3G25530, dehydrogenas 20.6 2.5E+02 0.0086 20.8 6.2 66 15-95 72-140 (310)
141 1wwk_A Phosphoglycerate dehydr 20.6 1.6E+02 0.0055 22.2 5.1 75 11-93 78-170 (307)
142 3hwr_A 2-dehydropantoate 2-red 20.6 1.7E+02 0.0058 22.0 5.2 28 15-48 81-108 (318)
143 3tpf_A Otcase, ornithine carba 20.5 2.9E+02 0.01 21.1 7.8 49 37-92 125-174 (307)
144 1vg8_A RAS-related protein RAB 20.5 94 0.0032 20.9 3.5 53 13-65 73-125 (207)
145 3k5p_A D-3-phosphoglycerate de 20.4 1.9E+02 0.0065 23.2 5.6 77 10-94 91-185 (416)
146 2il1_A RAB12; G-protein, GDP, 20.3 1.2E+02 0.004 20.5 3.9 47 15-65 93-139 (192)
147 1dbt_A Orotidine 5'-phosphate 20.3 56 0.0019 23.8 2.3 32 15-46 200-234 (239)
148 3ovp_A Ribulose-phosphate 3-ep 20.0 1.2E+02 0.004 22.1 4.0 33 15-47 183-218 (228)
No 1
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.92 E-value=1.4e-24 Score=161.33 Aligned_cols=143 Identities=25% Similarity=0.246 Sum_probs=106.4
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
++++...+++.+||+||||||+|++++++++|+|+|++..+|....++||++++|+++|+..++.+.++.++...+..+|
T Consensus 43 ~~~~~~~~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G 122 (193)
T 3d7n_A 43 NLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHG 122 (193)
T ss_dssp CCCHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHhHHHHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCC
Confidence 34443368999999999999999999999999999999887776789999999999998876777889999999999999
Q ss_pred cEEecCCCCCCCCC--ccccccccccccccceecC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 031886 89 MLFVPLGYTFGSGM--FEMNEVKGGSSYGAGTFAA-DG-SRQPTDLELQQAFHQGKYVAEIAKKLKR 151 (151)
Q Consensus 89 ~~~v~~g~~~~~~~--~~~~~~~~~~~~g~~~~~~-~~-~~~p~e~~l~~a~~lG~~la~~~~~l~~ 151 (151)
|.+++.++..+... ...+....|++||..++.+ ++ ...|+++++++|+++|++|++.+++|++
T Consensus 123 ~~~vg~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~ 189 (193)
T 3d7n_A 123 GLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKS 189 (193)
T ss_dssp CEECCCC-------------------CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CEEeCCccCcccccccccccCCCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999876543200 0011223466688776653 22 1238999999999999999999998863
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.91 E-value=2.6e-23 Score=153.72 Aligned_cols=136 Identities=51% Similarity=0.805 Sum_probs=112.1
Q ss_pred ChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 14 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+++.+||+||||||+|++++++++|+|||++...|....++||++++|+++|+. ++.+.++..+...+..+||.+++
T Consensus 62 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp CGGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hHHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 37899999999999999999999999999999988776668999999999999876 66778889999999999999998
Q ss_pred CCCCCCCCCccccccccccccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 151 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~p~e~~l~~a~~lG~~la~~~~~l~~ 151 (151)
.++..... ...+++.++.+||...+.+ ++...|+++++++|+++|++|++.++++++
T Consensus 141 ~~~~~~~~-~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 141 IGYAAQEL-FDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CTTCSGGG-GCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcccc-cccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87652100 0012245667788877754 344679999999999999999999999874
No 3
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.90 E-value=5.1e-23 Score=152.37 Aligned_cols=135 Identities=41% Similarity=0.628 Sum_probs=107.3
Q ss_pred ChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 14 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+++.+||+||||||+|++++++++|+|||++...|....++||++++|+++|+..++.+.++..+...+..+||.+++
T Consensus 65 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~ 144 (200)
T 2a5l_A 65 TLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLG 144 (200)
T ss_dssp CHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECC
T ss_pred hHHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEEC
Confidence 38899999999999999999999999999999988776668999999999999887667777889999999999999998
Q ss_pred CCCCCCCCCccccccccccccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 151 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~p~e~~l~~a~~lG~~la~~~~~l~~ 151 (151)
..+..... ...+..+.+|+...+.+ ++...|+++++++|+++|+++++.++++++
T Consensus 145 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 145 IPYSEPAL---LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp CCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCccc---cccccCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 76542110 11123456677665543 334579999999999999999999999875
No 4
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.2e-22 Score=150.60 Aligned_cols=132 Identities=37% Similarity=0.608 Sum_probs=106.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||+||||||+||+++++++|+|||++..+|....++||++++|+++|+..++.+.++..+...+..+||.+++.
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 78999999999999999999999999999999887766689999999999998865666678889999999999999987
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLKR 151 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~~ 151 (151)
++..+.. .+....+.+||.+...+. ..|+++++++|+++|+++++.++++++
T Consensus 145 ~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~ 196 (199)
T 2zki_A 145 GYGIPEL---FQTTTGGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKC 196 (199)
T ss_dssp TTCSTHH---HHCSSSCCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCccc---cccccCCCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6552100 011134556777544311 168999999999999999999998864
No 5
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.89 E-value=2e-22 Score=150.83 Aligned_cols=131 Identities=32% Similarity=0.415 Sum_probs=107.5
Q ss_pred CChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 13 IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 13 ~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
...+++.+||+||||||+||+++++++|+|||++...|....++||++++|+++|+..++.+.++..+...+..+||.++
T Consensus 71 ~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 150 (211)
T 1ydg_A 71 ATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLT 150 (211)
T ss_dssp CCHHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEEC
T ss_pred HHHHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 34889999999999999999999999999999998777667899999999999988766667788999999999999999
Q ss_pred cCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 93 PLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 93 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
+.++.... -....+..||.....+. ..|+++++++|+++|++|++.+++++
T Consensus 151 ~~~~~~~~-----~~~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~ 201 (211)
T 1ydg_A 151 PPGYTDEV-----IFKSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLL 201 (211)
T ss_dssp CCTTCSHH-----HHHTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChh-----hccCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 87654100 00123566777655311 35899999999999999999999886
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.84 E-value=4.1e-20 Score=136.36 Aligned_cols=126 Identities=29% Similarity=0.436 Sum_probs=98.8
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhh-hhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE-LWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~-~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
+.+...+++.+||+||||||+|++++++++|+|+|++.. .| ..++||++++|+++|++.++...++.++...+..+|
T Consensus 42 l~~~~~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g 119 (188)
T 2ark_A 42 VDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFG 119 (188)
T ss_dssp TTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTT
T ss_pred hhhCCHHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Confidence 444457899999999999999999999999999999875 22 468999999999988777777778899999999999
Q ss_pred cEEecCCCCCCCCCccccccccccccccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhh
Q 031886 89 MLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPT-DLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 89 ~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~-e~~l~~a~~lG~~la~~~~~l~ 150 (151)
|.+++.+...+. .....||.... ..|+ ++++++|+++|+++++.+++++
T Consensus 120 ~~~~~~~~~~~~--------~~~~~~g~~~~-----~~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 120 FLVFGVTDYVGK--------KFTLHYGAVVA-----GEPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp CEECCEEEEEET--------TEEESSSEEEE-----SSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEeCCCccccc--------cccCCCcceee-----cCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999864321100 01112443221 3577 9999999999999999999875
No 7
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.73 E-value=3.9e-17 Score=125.91 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh-hccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~-~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.++|.+||+|||+||+||+++++++|+|||++...+. ...++||++++++++|+. |+. .++..+...+..+||.+++
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v~ 170 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITIP 170 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEeC
Confidence 7899999999999999999999999999999976543 246899999999998764 333 4567888889999999996
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
..+.. +..+.. +.+++. ..+++..++++.+++++++.+++++
T Consensus 171 ~~v~i------------~~~~~~--fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~ 212 (247)
T 2q62_A 171 NQSSV------------AKAFQE--FDANGR-MKPSSYYDRVVDVMEELVKFTLLTR 212 (247)
T ss_dssp CCEEE------------SSGGGG--BCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEE------------ecchhc--cCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432 111111 211222 3567888999999999999998886
No 8
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.71 E-value=1.4e-16 Score=115.05 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=81.0
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCC
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 95 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g 95 (151)
+++.++|+||||||||++.++ . +.|++++... .++||++++|+++||. +. ++..+.+.+...|+.+++.+
T Consensus 47 ~~~~~~d~ii~Gspty~g~~p-~-~~fl~~l~~~----~l~gk~v~~fgs~g~~-g~---a~~~l~~~l~~~G~~~v~~~ 116 (161)
T 3hly_A 47 EAVSSARGIVLGTPPSQPSEA-V-ATALSTIFAA----AHNKQAIGLFDSYGGD-DE---PIDALLAQFRNLGLHTAFPP 116 (161)
T ss_dssp HHHHHCSEEEEECCBSSCCHH-H-HHHHHHHHHH----CCTTSEEEEECCCCSS-BC---CHHHHHHHHHHTTCEESSSC
T ss_pred HHHHhCCEEEEEcCCcCCchh-H-HHHHHHHHhh----hhCCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecCc
Confidence 455789999999999987755 4 9999998642 5899999999998774 33 36788888889999999765
Q ss_pred CCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 96 YTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
+.. ...|+++++++|+++|++|++.+++-+
T Consensus 117 ~~~-------------------------~~~P~~~dl~~~~~~g~~la~~l~~~~ 146 (161)
T 3hly_A 117 IRV-------------------------KDQPTEAIYQQCEESGTDLGQWLTRAD 146 (161)
T ss_dssp BCC-------------------------CSSCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 432 246999999999999999998877543
No 9
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.71 E-value=1.1e-16 Score=115.52 Aligned_cols=100 Identities=10% Similarity=0.142 Sum_probs=81.4
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.++|+||||||||++.++ ++.|++++... .++||++++|+++||. ++ .+..+.+.+...|+.+++.
T Consensus 51 ~~~~~~~d~ii~Gspty~g~~p--~~~~l~~l~~~----~~~~k~va~fgs~g~~-~~---a~~~l~~~l~~~G~~~v~~ 120 (159)
T 3fni_A 51 RELVGRCTGLVIGMSPAASAAS--IQGALSTILGS----VNEKQAVGIFETGGGD-DE---PIDPLLSKFRNLGLTTAFP 120 (159)
T ss_dssp HHHHHTEEEEEEECCBTTSHHH--HHHHHHHHHHH----CCTTSEEEEECCSSSC-BC---CHHHHHHHHHHTTCEESSS
T ss_pred HHHHHhCCEEEEEcCcCCCCcc--HHHHHHHHHhh----cccCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecC
Confidence 4466779999999999998865 59999998653 6899999999998764 33 2578888888999999976
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
++.. ...|+++++++|+++|++|++.+++-
T Consensus 121 ~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~~~~~ 150 (159)
T 3fni_A 121 AIRI-------------------------KQTPTENTYKLCEEAGTDLGQWVTRD 150 (159)
T ss_dssp CBCC-------------------------SSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEE-------------------------EeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 25699999999999999999877653
No 10
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.71 E-value=7.7e-17 Score=126.20 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=91.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh-hccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~-~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.++|.+||+|||+||+||+++++++|+|||++...+. ...++||++++++++|+. |+. .++..+...+..+||.+++
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~ 195 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIP 195 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeC
Confidence 7899999999999999999999999999999976543 246899999999998764 332 4577888889999999996
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
..+.+. ..+.. +++++. ..+++..++++.+++++++.+++++
T Consensus 196 ~~v~v~------------~~~~~--fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~ 237 (279)
T 2fzv_A 196 NQSSIA------------KAFQE--FDAAGR-MKPSPYYDRIADVMEELVRFTALVR 237 (279)
T ss_dssp CCEEET------------TGGGT--BCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHG
T ss_pred CEEEEe------------ccccc--cCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 554331 11111 221222 3567788999999999999998876
No 11
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.70 E-value=4.4e-16 Score=116.34 Aligned_cols=119 Identities=18% Similarity=0.109 Sum_probs=91.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.++|.+||+|||+||+||+++++.+|+|||++.. +....|+||++++++++|++.|+. .+...+...+...|+.+++.
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~~ 145 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLNR 145 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcCC
Confidence 7789999999999999999999999999999976 223579999999999987655554 45678888888999999974
Q ss_pred -CCCCCCCCccccccccccccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 95 -GYTFGSGMFEMNEVKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 95 -g~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
.+.+ +... ..++++ +. ..|++..++++.+.+++++.+++++
T Consensus 146 ~~v~i------------~~~~--~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~ 188 (199)
T 4hs4_A 146 PEAMI------------GQVT--GKVDAQTLE-LSDVATREFLARQLDALAALARTLS 188 (199)
T ss_dssp SCEEE------------CSGG--GTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEe------------echh--hhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3332 1111 113211 22 3588889999999999999988765
No 12
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.70 E-value=1.9e-16 Score=117.70 Aligned_cols=119 Identities=21% Similarity=0.149 Sum_probs=88.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||+|||+||+||+++++.+|+|||++... ....++||++++++++|++.|+. .+...+...+..+|+.+++.
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~ 144 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNK 144 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCC
Confidence 78999999999999999999999999999999752 23579999999999876655544 45678888888999999964
Q ss_pred C-CCCCCCCccccccccccccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 95 G-YTFGSGMFEMNEVKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 95 g-~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
+ +.+ +... ..++++ +. ..|++..++++.+.++++..+++++
T Consensus 145 ~~~~~------------~~~~--~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 145 PEFMG------------GVIQ--NKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp SCEEE------------TTGG--GGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred CeEee------------cchh--hhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 111 1111 123222 22 4588999999999999998877654
No 13
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.70 E-value=2.2e-17 Score=126.24 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=86.8
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
+++..+ .+++.+||+|||+||+||+++++.+|+||||+...++...++||++++|+++|+.+ ...++..+...+..+
T Consensus 68 ~~~~~~-~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~ 144 (242)
T 1sqs_A 68 DDGGVI-KKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYM 144 (242)
T ss_dssp STHHHH-HHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCc--hhhHHHHHHHHHHHC
Confidence 344444 78899999999999999999999999999999655444578999999999987642 234567888888899
Q ss_pred CcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031886 88 GMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 88 g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~ 148 (151)
|+.+++. +.. . ..++++.+++++++|+++++.+++
T Consensus 145 G~~~v~~-~~~--------------------~-----~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 145 GGQILHQ-VSI--------------------T-----NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp TCEEEEE-EEE--------------------E-----GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeeE-EEE--------------------e-----ccCChHHHHHHHHHHHHHHHHHhc
Confidence 9999864 110 1 012336899999999999988754
No 14
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.68 E-value=3.4e-16 Score=115.51 Aligned_cols=118 Identities=21% Similarity=0.153 Sum_probs=85.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||+|||+||+||+++++.+|+|||++...+. ..++||++++|+++|++.++ ..++..+...+...|+.+++.
T Consensus 67 ~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~ 144 (193)
T 1rtt_A 67 REQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNK 144 (193)
T ss_dssp HHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCS
T ss_pred HHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCC
Confidence 6789999999999999999999999999999975432 46899999999998665544 346778888888999999974
Q ss_pred -CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 95 -GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 95 -g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
.+... .... .+++++ ...+++..++++++++++.+.+.+.
T Consensus 145 ~~~~~~------------~~~~--~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~ 185 (193)
T 1rtt_A 145 PEVMIS------------SAQN--AFDAQG-RLLDDKARELIQQQLQALQLWVREG 185 (193)
T ss_dssp SCEEEC------------SGGG--TBCSTT-CBCCHHHHHHHHHHHHHHHC-----
T ss_pred CeEEec------------chHh--hcCcCC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33321 1110 111122 2457888999999999998777654
No 15
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.68 E-value=4.2e-17 Score=121.01 Aligned_cols=118 Identities=14% Similarity=0.034 Sum_probs=88.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh------hccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA------SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~------~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
.+++.+||+|||+||+||+++++.+|+|||++..... ...|+||++++++++|+. | ....+..+...+..+|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999986321 236999999999998763 2 3345678888888999
Q ss_pred cEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 89 MLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 89 ~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
|.+++...... +....+. ++...++++..++++.+.+++.+.+++|
T Consensus 140 ~~~v~~~v~~~--------------~~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~ 185 (192)
T 3fvw_A 140 MHLVDQLTGVP--------------INSEAWS-TGILKVSAEKLAELSAQADALLSAIENL 185 (192)
T ss_dssp CEECCCCEEEC--------------CCTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred Ceeecceeecc--------------cchhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhh
Confidence 99998643321 1111122 2333468999999999999998877655
No 16
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.67 E-value=1.9e-16 Score=115.23 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=87.2
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||+|||+||+||+++++.+|+|||++.. ..++||++++|+++|++.|+ ...+..+...+..+|+.+++.
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v~~ 132 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVIPK 132 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEecc
Confidence 5689999999999999999999999999999865 36899999999987665443 345678888888999999975
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~ 148 (151)
++.++ . ..++. ....++++..+++.++.+++++.++.
T Consensus 133 ~v~i~------------~----~~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~ 169 (174)
T 3gfs_A 133 QLVLK------------P----VHIDV-ENATVAENIKESIKELVEELSMFAKA 169 (174)
T ss_dssp EEEEC------------G----GGEET-TTTEECHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEec------------h----hhcCC-CCCccCHHHHHHHHHHHHHHHHHHHc
Confidence 43321 1 01221 12457889999999999999988764
No 17
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.67 E-value=1.8e-16 Score=111.02 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=83.5
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchH--HHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAA--QCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~--~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
++.+.+.+++.++|.||||||||++++++ .++.|++++.. .++||++++|+++||..+ .++..+.+.|..
T Consensus 34 ~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~~---~a~~~l~~~l~~ 105 (138)
T 5nul_A 34 NVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST-----KISGKKVALFGSYGWGDG---KWMRDFEERMNG 105 (138)
T ss_dssp EGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSCS---HHHHHHHHHHHH
T ss_pred EhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCCC---hHHHHHHHHHHH
Confidence 44555578899999999999999999765 79999999864 289999999999887532 357888999999
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
.|+.+++.++.. ...|++++ ++|+++|++|++
T Consensus 106 ~G~~~v~~~~~~-------------------------~~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 106 YGCVVVETPLIV-------------------------QNEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp TTCEECSCCEEE-------------------------ESSCGGGH-HHHHHHHHHHHT
T ss_pred CCCEEECCceEE-------------------------ecCCCHHH-HHHHHHHHHHhc
Confidence 999999764332 14689999 999999999985
No 18
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.66 E-value=1.8e-15 Score=112.44 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=90.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.++|.+||++||+||+|++++|+.+|++||.+++.+....|.||++++++++++..|+. .....+...+...|+.+++.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECCC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEccC
Confidence 56899999999999999999999999999999865555689999999999876655543 45678888888999998864
Q ss_pred C-CCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 95 G-YTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 95 g-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
+ +.+ +. ....+++++. ..|++..++++.+.+++++.+++.
T Consensus 141 p~~~i------------~~--~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 141 PEAYI------------QW--HAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp SCCEE------------EC--CGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEE------------ec--cHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 2 211 11 1112322322 457888899999999999988874
No 19
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.66 E-value=8.6e-18 Score=122.59 Aligned_cols=110 Identities=16% Similarity=0.044 Sum_probs=81.3
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhh-------ccCCCCcEEEEEccCCCCc-cHHHHHHHHHHHHHh
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWAS-------QALAGKPAGIFWSTGFHGG-GQELTALTAVTQLAH 86 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~-------~~l~gK~~~~f~s~g~~~g-~~~~~l~~~~~~l~~ 86 (151)
.+++.+||+|||+||+||+++++++|+||||+...+.. ..++||++++|+++|+... +....+..+...+..
T Consensus 66 ~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~ 145 (184)
T 1rli_A 66 IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHF 145 (184)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998654321 2578999999999876321 123356788888889
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
.||.+++. +.. .+... +...++++.+++|+++|+++|.
T Consensus 146 ~G~~~~~~-~~~-----------~g~~~--------~~~~~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 146 MGMSFKGY-VLG-----------EGNRP--------GDILRDHQALSAASRLLKRSDA 183 (184)
T ss_dssp HTCEEEEE-EEE-----------ECSST--------TGGGGCHHHHHHHHHTTCCCCC
T ss_pred cCCccceE-EEE-----------ccCCc--------chhhcCHHHHHHHHHhhhhccc
Confidence 99998863 110 01111 1123589999999999998763
No 20
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.63 E-value=7.3e-16 Score=114.55 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=85.0
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHH-HHHHHHhc
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALT-AVTQLAHH 87 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~-~~~~l~~~ 87 (151)
++..+ .++|.+||+|||+||+||++++++||+|||++.. ..++||++++++++|+.+ +.. .++. +...+..+
T Consensus 75 ~~~~~-~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~-~~~-~~~~~L~~il~~l 147 (191)
T 3k1y_A 75 KLEEI-TSALSASDGLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSAR-HSL-VLDYALRPLLSYM 147 (191)
T ss_dssp HHHHH-HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSST-TTT-HHHHTHHHHHHHT
T ss_pred HHHHH-HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcc-hhh-HHHHHHHHHHHHC
Confidence 33444 8899999999999999999999999999999974 479999999999876543 332 2333 77777889
Q ss_pred CcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 88 GMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 88 g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
|+.+++.++... +. .++++ -+++..+++.++++++++.+++-+
T Consensus 148 g~~vv~~~v~~~-----------~~-----~f~~~----~~~~~~~rl~~~~~~~~~~~~~~~ 190 (191)
T 3k1y_A 148 RAVVVPTGVFAA-----------TE-----DFGGP----EGAEFNKRIARAAGELASLIVEES 190 (191)
T ss_dssp TCEECSCCEEEE-----------GG-----GCSHH----HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEcCcEEEec-----------hh-----hcCCC----CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999997654321 01 11100 146678888899999998887654
No 21
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.62 E-value=7.2e-16 Score=114.37 Aligned_cols=114 Identities=19% Similarity=0.074 Sum_probs=84.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHH-HHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTAL-TAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~-~~~~~l~~~g~~~v~ 93 (151)
.+++.+||+|||+||+|++++++.+|+|||++.. ..++||++++|+++|+. ++. ..+. .+...+..+|+.+++
T Consensus 64 ~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~-~~~-~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 64 VDATCNADGLIVATPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSP-AHV-LALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSG-GGG-GHHHHTHHHHHHTTTCSEEC
T ss_pred HHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCc-chh-hHHHHHHHHHHHHcCCEecc
Confidence 5789999999999999999999999999999863 37999999999996653 332 2343 678888899999997
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
.+.... ...+ . +.+++. .++++..++++++++++++.+++.
T Consensus 138 ~~v~~~-----------~~~~-~--~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~ 178 (197)
T 2vzf_A 138 QSFFLV-----------QSQF-S--VVDGKL-AVEDDVASQLNNAIDHFRLSLSSE 178 (197)
T ss_dssp CCEEEE-----------SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCC
T ss_pred ceEEEe-----------chhh-c--ccCCCC-cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 643321 0001 0 111222 689999999999999998766543
No 22
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.61 E-value=3.7e-15 Score=121.18 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=84.4
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccC-CCCcEEEEEccCCCCccHHHHHHHHHHHHHh-cCcEEec
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAH-HGMLFVP 93 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l-~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~-~g~~~v~ 93 (151)
+++.+||+||||||+|++++++++|+|+|++... .+ +||++++|+++|+. ++ +...+...+.. +|+.+++
T Consensus 303 ~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~-~~---a~~~l~~~l~~~~g~~~~~ 374 (414)
T 2q9u_A 303 LHTYDSGAVAFASPTLNNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWS-NR---AVPDIVAELRDGCKADVYD 374 (414)
T ss_dssp HHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSS-CC---HHHHHHHHHHHTSCCBCCC
T ss_pred HHHHhCCEEEEEcCccCcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCC-ch---hHHHHHHHHHhhcCcEEcc
Confidence 4899999999999999999999999999999754 46 99999999998775 43 35677777888 8999886
Q ss_pred CC-CCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 94 LG-YTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 94 ~g-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
.+ +.. ...|+++++++|+++|+++++.+++++
T Consensus 375 ~~~~~~-------------------------~~~p~~~~~~~~~~~g~~l~~~~~~~~ 407 (414)
T 2q9u_A 375 EKGITF-------------------------KFNYTEELLEQAYNAGVDLGKRAIAYC 407 (414)
T ss_dssp SSCEEE-------------------------ESCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 221 135899999999999999999888765
No 23
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.38 E-value=9.4e-17 Score=119.92 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=90.2
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
+++..+ .+++.+||+|||+||+||+++++.+|+|||++...+.. .++||++++++++|++.|+ ..+...+...+..+
T Consensus 62 ~~~~~~-~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~~l~~l 138 (199)
T 3s2y_A 62 APVLTM-AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGG-ARAQYHLRQSLVFL 138 (199)
Confidence 445555 88999999999999999999999999999999764322 6899999999987655443 33567788888889
Q ss_pred CcEEecC-CCCCCCCCccccccccccccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031886 88 GMLFVPL-GYTFGSGMFEMNEVKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKLK 150 (151)
Q Consensus 88 g~~~v~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~p~e~~l~~a~~lG~~la~~~~~l~ 150 (151)
|+.+++. ++.+. ... ..++++ +. ..|++..++++.+.+++++.+++.+
T Consensus 139 g~~~v~~~~v~i~------------~~~--~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 188 (199)
T 3s2y_A 139 DAYVLNRPEAMIG------------QVT--GKVDAQTLE-LSDVATREFLARQLDALAALARTLS 188 (199)
Confidence 9998865 44331 111 112212 22 3456677888888888887776554
No 24
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.58 E-value=3.9e-15 Score=103.46 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHH--HHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHh
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQ--CKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAH 86 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~--~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~ 86 (151)
++.+.+.+++.++|.||||||+|+++++++ +|+|+|++.. .++||++++|+++|+..+ .+...+...+..
T Consensus 35 ~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-----~l~~k~~~~~~t~g~~~~---~~~~~l~~~l~~ 106 (137)
T 2fz5_A 35 RFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-----KLKGKKVGLFGSYGWGSG---EWMDAWKQRTED 106 (137)
T ss_dssp ETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----GCSSCEEEEEEEESSCCS---HHHHHHHHHHHH
T ss_pred EcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-----hcCCCEEEEEEecCCCCc---hHHHHHHHHHHH
Confidence 344455788999999999999999999999 9999999853 689999999999876422 356788888888
Q ss_pred cCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 87 HGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 87 ~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
.|+.+++ ++.. . ..|++ +++++++|+++++
T Consensus 107 ~g~~~~~-~~~~-----------------------~--g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 107 TGATVIG-TAIV-----------------------N--EMPDN--APECKELGEAAAK 136 (137)
T ss_dssp TTCEEEE-EEEE-----------------------E--SSSSS--CTHHHHHHHHHHT
T ss_pred CCCEEcC-cEEE-----------------------e--eCCCh--HHHHHHHHHHHhc
Confidence 9999883 2221 0 23554 9999999999874
No 25
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.57 E-value=7.1e-15 Score=118.81 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=83.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.+||+||||||+|++++++.+|+|+|++...+... ++||++++|+++|+. ++. +..+...+..+|+.+++.
T Consensus 302 ~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~-~~a---~~~l~~~l~~~g~~~~~~ 376 (404)
T 2ohh_A 302 VKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGN-GGA---TGTMKELLAEAGFDVACE 376 (404)
T ss_dssp HHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSS-CCH---HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCC-Chh---HHHHHHHHHHCCCEEEeE
Confidence 347999999999999999999999999999998654434 799999999998775 333 467888888899999863
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~ 147 (151)
+.. ...|+++++++++++|+++++.++
T Consensus 377 -~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 377 -EEV-------------------------YYVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp -EEE-------------------------ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -EEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHh
Confidence 211 135789999999999999998764
No 26
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.55 E-value=1.4e-14 Score=107.81 Aligned_cols=109 Identities=18% Similarity=0.094 Sum_probs=77.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh---------hhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---------ASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLA 85 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~ 85 (151)
.+++.+||+|||+||+||+++++++|+||||+.... ....++||++++++++|+..++.......+...+.
T Consensus 89 ~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~ 168 (208)
T 2hpv_A 89 TDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILN 168 (208)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHH
Confidence 678999999999999999999999999999986421 12358999999999887654432334556677778
Q ss_pred hcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 86 HHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 86 ~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
..|+.+++. +.. +|. +......++.++++++.++++++
T Consensus 169 ~~G~~~~~~-~~~---------------~~~-----~~~~~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 169 FIGVDQVDG-LFI---------------EGI-----DHFPDRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp HTTCCEEEE-EEE---------------ECT-----TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred hCCCCeeeE-EEE---------------ccc-----cCCHHHHHHHHHHHHHHHHHHHh
Confidence 888887752 110 111 10012345678889999998875
No 27
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.54 E-value=7.6e-15 Score=120.42 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=78.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
++++.+||+||||||||++++.+.|+.|++.+..+ .++||++++|||+||. |++ ...+.+.+..+|+.+++.
T Consensus 314 ~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~----~~~~K~~~~FGSyGWs-g~a---~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 314 LKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDK----ANYEKPVLVFGVHGWA-PSA---ERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHH----CCCCCEEEEEEECCCC-CTT---SCCHHHHHTTSSCEEEEE
T ss_pred HHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhc----ccCCCEEEEEECCCCC-cHH---HHHHHHHHHHCCCEEECc
Confidence 67888999999999999999999999999998764 7899999999999875 443 467778888999999864
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHH
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYV 142 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~l 142 (151)
.... ...++++++++|.+++++.
T Consensus 386 ~~~~-------------------------~~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 386 TEIK-------------------------GSNMDERKIEEAISLLKKE 408 (410)
T ss_dssp EEEC-------------------------STTCCHHHHHHHHHHHHHH
T ss_pred EEEE-------------------------CCCCCHHHHHHHHHHHHHh
Confidence 3211 1357889999999888764
No 28
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.53 E-value=9.3e-15 Score=103.32 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=81.9
Q ss_pred CCCCChHHHh-hCCEeEEeccccC---CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHH
Q 031886 10 VPVIRPHQLK-EADGFLFGFPSRF---GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLA 85 (151)
Q Consensus 10 ~~~~~~~~l~-~aD~iIlgsPtY~---~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~ 85 (151)
+.+.+.+++. ++|.||||||||+ |.+++.++.|++++.. ..++||++++|+++....++...+...+...|.
T Consensus 38 ~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~ 113 (148)
T 3f6r_A 38 AADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAK 113 (148)
T ss_dssp TTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHH
T ss_pred hhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3444456777 9999999999998 6999999999999864 369999999999832212233345788888999
Q ss_pred hcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 86 HHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 86 ~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
..|+.+++.++.. + ..|++ +++++++++++|++.
T Consensus 114 ~~G~~~~~~~~~~-----------------------~--~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 114 ELGATIIAEGLKM-----------------------E--GDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp HTTCEECSCCEEE-----------------------E--SSGGG-CHHHHHHHHHHHHHT
T ss_pred HcCCEEeecceEe-----------------------e--cCcch-HHHHHHHHHHHHHhh
Confidence 9999999764321 1 35888 999999999999864
No 29
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.51 E-value=2.2e-14 Score=105.68 Aligned_cols=79 Identities=23% Similarity=0.139 Sum_probs=62.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh---------hccCCCCcEEEEEccCCCCcc--HHHHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA---------SQALAGKPAGIFWSTGFHGGG--QELTALTAVTQ 83 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~~g~--~~~~l~~~~~~ 83 (151)
.+++.+||+|||+||+||+++++++|+||||+..... ...++||++++|+++|+..++ .+.....+...
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~ 160 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF 160 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHH
Confidence 5789999999999999999999999999999974211 135899999999998775333 12245667777
Q ss_pred HHhcCcEEec
Q 031886 84 LAHHGMLFVP 93 (151)
Q Consensus 84 l~~~g~~~v~ 93 (151)
+...|+.+++
T Consensus 161 l~~~G~~~~~ 170 (201)
T 1t5b_A 161 LGFIGITDVN 170 (201)
T ss_dssp HHHTTCCCEE
T ss_pred HhhcCcceeE
Confidence 7888888775
No 30
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.49 E-value=7.1e-14 Score=102.65 Aligned_cols=71 Identities=24% Similarity=0.177 Sum_probs=60.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.+++.+||+|||+||+||+++++.+|+|||++.. .++||++++|++ |+. ++ ..++..+...+...||.+++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~-~~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGH-GG-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETT-TT-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCc-ch-hhHHHHHHHHHHHCCCEEcc
Confidence 6789999999999999999999999999999863 589999998865 553 33 34677888888999999987
No 31
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.48 E-value=1e-13 Score=111.81 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=82.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.++|+||||||||++++++.+|+|+|++... .++||++++|+++|+ .++. +..+...+...|+.+++.
T Consensus 297 ~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~----~~~~k~~~~~~s~g~-~~~a---~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 297 IKEILDARAVLVGSPTINNDILPVVSPLLDDLVGL----RPKNKVGLAFGAYGW-GGGA---QKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHH----CCSSCEEEEEEEESS-SCCH---HHHHHHHHHHTTCEESCS
T ss_pred HHHHHHCCEEEEECCccCccchHHHHHHHHHHhcc----ccCCCEEEEEEeCCC-chHH---HHHHHHHHHHCCeEEecC
Confidence 35578999999999999999999999999998753 689999999999876 3443 677888888999999875
Q ss_pred C-CCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031886 95 G-YTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 95 g-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~ 147 (151)
+ +.. ...|+++++++++++|+++++.++
T Consensus 369 ~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 369 PGPTV-------------------------QWVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp SCCEE-------------------------ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEE-------------------------ecCCCHHHHHHHHHHHHHHHHHHh
Confidence 3 321 135889999999999999998763
No 32
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.48 E-value=2.7e-14 Score=100.72 Aligned_cols=102 Identities=17% Similarity=0.084 Sum_probs=78.9
Q ss_pred ChHHHhh-CCEeEEeccccC-Cc--chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCc
Q 031886 14 RPHQLKE-ADGFLFGFPSRF-GV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 89 (151)
Q Consensus 14 ~~~~l~~-aD~iIlgsPtY~-~~--~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~ 89 (151)
..+++.+ +|.||||||||+ +. +++.+++|+|++.. ..++||++++|+++++..++...+...+...+...|+
T Consensus 41 ~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~ 116 (147)
T 1f4p_A 41 EAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGA 116 (147)
T ss_dssp CSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTC
T ss_pred CHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCC
Confidence 3456888 999999999995 66 79999999999864 2689999999999644333445577889999999999
Q ss_pred EEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 90 LFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 90 ~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
.+++.++.. + ..|++ ++++++++++++++.
T Consensus 117 ~~~~~~~~~-----------------------~--~~p~~-~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 117 EIVQDGLRI-----------------------D--GDPRA-ARDDIVGWAHDVRGA 146 (147)
T ss_dssp EECSCCEEE-----------------------E--SCGGG-GHHHHHHHHHHHHTT
T ss_pred eEhhccccc-----------------------c--cCchh-HHHHHHHHHHHHHhh
Confidence 988754321 1 23655 889999999998753
No 33
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.47 E-value=2.7e-13 Score=109.44 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=83.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.++|+||||||+|++++++.+++|+|++... .++||++++|+++|+. ++ ++..+...+..+|+.+++.
T Consensus 298 ~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~~----~l~~k~~~~f~t~g~~-~~---a~~~l~~~l~~~G~~~~~~ 369 (402)
T 1e5d_A 298 MSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGL----RPQNKIGGAFGSFGWS-GE---STKVLAEWLTGMGFDMPAT 369 (402)
T ss_dssp HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHT----CCCSCEEEEEEEESSS-CH---HHHHHHHHHHHTTCBCCSC
T ss_pred HHHHHHCCEEEEECCccCCCchHHHHHHHHHhhhc----ccCCCEEEEEEcCCCc-cH---HHHHHHHHHHHCCCEEecC
Confidence 35579999999999999999999999999998753 6899999999998653 32 4678888888899988864
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 149 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~l 149 (151)
++.. + ..|+++++++++++|+++++.+++.
T Consensus 370 ~~~~-----------------------~--~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 370 PVKV-----------------------K--NVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp CEEE-----------------------E--SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEE-----------------------e--eCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3221 1 3588999999999999999887654
No 34
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.42 E-value=7.5e-13 Score=98.97 Aligned_cols=79 Identities=25% Similarity=0.163 Sum_probs=59.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh-----h--------hccCCCCcEEEEEccC--CCCccH-----H
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-----A--------SQALAGKPAGIFWSTG--FHGGGQ-----E 74 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~-----~--------~~~l~gK~~~~f~s~g--~~~g~~-----~ 74 (151)
.++|.+||+|||+||+||+++++++|+||||+.... . ...++||++.+++++| ++.++. .
T Consensus 82 ~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 161 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMN 161 (212)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGC
T ss_pred HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchh
Confidence 578999999999999999999999999999995321 0 2468999999999987 332221 1
Q ss_pred HHHHHHHHHHHhcCcEEec
Q 031886 75 LTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 75 ~~l~~~~~~l~~~g~~~v~ 93 (151)
.....+...+...|+..++
T Consensus 162 ~~~~~l~~~l~~~G~~~~~ 180 (212)
T 3r6w_A 162 HADPWLRTALGFIGIDEVT 180 (212)
T ss_dssp CSHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHHHHHCCCceeE
Confidence 2245566666777887774
No 35
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.38 E-value=4.9e-12 Score=93.93 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh-h----hccCCCCcEEEEEccCCCCc-----c-----
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-A----SQALAGKPAGIFWSTGFHGG-----G----- 72 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~-~----~~~l~gK~~~~f~s~g~~~g-----~----- 72 (151)
+|+... .+++.+||+|||++|+||+++|+.+|+||||+.... . ...|+||++.+++++|+... +
T Consensus 47 ~dv~~~-~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~ 125 (192)
T 3f2v_A 47 IDVAAE-QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCS 125 (192)
T ss_dssp CCHHHH-HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSC
T ss_pred hhHHHH-HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccC
Confidence 344444 789999999999999999999999999999985431 1 14789999999999876421 1
Q ss_pred HHHHHHHHHHHHHhcCcEEecC
Q 031886 73 QELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 73 ~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+..+..+...+...||..++.
T Consensus 126 ~~~~l~pl~~~~~f~G~~~~~~ 147 (192)
T 3f2v_A 126 VAEVLRPFELTAKYCNADYRPP 147 (192)
T ss_dssp HHHHHHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHhCCCeEeee
Confidence 1223344566778889998864
No 36
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.37 E-value=2.4e-12 Score=97.59 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=76.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh---h------hccC-CCCcEEEEEccCCCCcc--H----HHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---A------SQAL-AGKPAGIFWSTGFHGGG--Q----ELTAL 78 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~---~------~~~l-~gK~~~~f~s~g~~~g~--~----~~~l~ 78 (151)
.+++.+||+|||++|+||+++++.+|+||||+.... . ...+ +||++.+++++|+..++ . +....
T Consensus 89 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~ 168 (223)
T 3u7i_A 89 LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHK 168 (223)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHH
T ss_pred HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHH
Confidence 788999999999999999999999999999986531 0 1346 89999999998765332 1 12345
Q ss_pred HHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 79 TAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 79 ~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
.+...+...|+..+..-+. .|. + ..+.++.++++++-++.+++..
T Consensus 169 ~l~~~l~~~G~~~~~~i~~----------------~g~-----~--~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 169 YLKAMFNFLGIEDYQIVRA----------------QGT-----A--VLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp HHHHHHHHHTCCEEEEEEE----------------CCT-----T--TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceeEEEEE----------------cCc-----c--CCCHHHHHHHHHHHHHHHHHHH
Confidence 5666777778877742110 011 1 2246777888888877777654
No 37
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.37 E-value=4.5e-12 Score=91.25 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=84.5
Q ss_pred CChHHHhhCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC-Cc-cHHHHHHHHHHHHHhcCc
Q 031886 13 IRPHQLKEADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGM 89 (151)
Q Consensus 13 ~~~~~l~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-~~~~~l~~~~~~l~~~g~ 89 (151)
.+.+++.++|.||||+|||+ +.++..+|.|++++.. ..++||++++|+++++. .+ +...++..+...+...|+
T Consensus 39 ~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~ 114 (169)
T 1czn_A 39 ADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGS 114 (169)
T ss_dssp CCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTC
T ss_pred CCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCC
Confidence 34568999999999999998 6799999999998853 37999999999997652 22 345668889999989999
Q ss_pred EEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 90 LFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 90 ~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
.+++.-...++.|.....+..+.+.|. ..+ . ..+++.+.+++.++++.+.+.+
T Consensus 115 ~~~~~~~~~g~~~~~s~~~~~~~~~gl-~~~--~-~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 115 QTVGYWPIEGYDFNESKAVRNNQFVGL-AID--E-DNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp EECCCEECTTCCCSCCTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCcceecchheeCCeeeee-eec--C-CCccccCHHHHHHHHHHHHHHh
Confidence 999731111111000001111122232 121 1 2356788999999999987643
No 38
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.37 E-value=8.9e-13 Score=98.96 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=59.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh---------hccCCCCcEEEEEccCCCCccH-----HHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA---------SQALAGKPAGIFWSTGFHGGGQ-----ELTALTA 80 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~~g~~-----~~~l~~~ 80 (151)
.+++.+||+|||++|+||+++++.+|+||||+..... ...++||++.+++++|+..++. ......+
T Consensus 87 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l 166 (211)
T 3p0r_A 87 LNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYV 166 (211)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHH
T ss_pred HHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHH
Confidence 6789999999999999999999999999999864211 2358999999999987654321 1224555
Q ss_pred HHHHHhcCcEEe
Q 031886 81 VTQLAHHGMLFV 92 (151)
Q Consensus 81 ~~~l~~~g~~~v 92 (151)
...+...|+..+
T Consensus 167 ~~~l~~~G~~~v 178 (211)
T 3p0r_A 167 ASMMGFFGATNM 178 (211)
T ss_dssp HHHHHHTTCCSC
T ss_pred HHHHHhCCCCee
Confidence 666666677655
No 39
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.36 E-value=1.4e-12 Score=97.41 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=63.0
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhh-hh-------------------hccCCCCcEEEEEccCC
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA-------------------SQALAGKPAGIFWSTGF 68 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~-~~-------------------~~~l~gK~~~~f~s~g~ 68 (151)
|+... .++|.+||+|||++|+||+++|+++|+||||+... |. ...++||++.+++++|+
T Consensus 60 d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~ 138 (204)
T 2amj_A 60 DVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNA 138 (204)
T ss_dssp CHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSS
T ss_pred cHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCC
Confidence 34444 88999999999999999999999999999997532 21 13589999999999876
Q ss_pred CCc------------cHHHHHHHHHHHHHhcCcEEecC
Q 031886 69 HGG------------GQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 69 ~~g------------~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
..+ .....+..+...+...||.+++.
T Consensus 139 ~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 139 PMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp CTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTTCEECCC
T ss_pred ChHHHccCcccccCCCHHHHHHHHHHHHHHcCCeecce
Confidence 421 11122334667778889988753
No 40
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.34 E-value=1.7e-12 Score=96.33 Aligned_cols=79 Identities=23% Similarity=0.186 Sum_probs=57.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh---h------hccCCCCcEEEEEccCCC--Cc--cHHHHHHHHH
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---A------SQALAGKPAGIFWSTGFH--GG--GQELTALTAV 81 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~---~------~~~l~gK~~~~f~s~g~~--~g--~~~~~l~~~~ 81 (151)
.+++.+||+|||++|+||+++|+.+|+||||+.... . ...|+||++.+++++|+. .. +.......+.
T Consensus 68 ~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~ 147 (196)
T 3lcm_A 68 RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKK 147 (196)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHH
T ss_pred HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHH
Confidence 778999999999999999999999999999985421 0 236899999999998765 10 0000113445
Q ss_pred HHHHhcCcEEec
Q 031886 82 TQLAHHGMLFVP 93 (151)
Q Consensus 82 ~~l~~~g~~~v~ 93 (151)
..+...|+..++
T Consensus 148 ~~l~~~G~~~~~ 159 (196)
T 3lcm_A 148 QILKPCAISPVK 159 (196)
T ss_dssp HTTGGGTCCCEE
T ss_pred HHHHhcCCceee
Confidence 555566666554
No 41
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.33 E-value=1.4e-11 Score=88.67 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=83.9
Q ss_pred CCChHHHhhCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC-Cc-cHHHHHHHHHHHHHhcC
Q 031886 12 VIRPHQLKEADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHG 88 (151)
Q Consensus 12 ~~~~~~l~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-~~~~~l~~~~~~l~~~g 88 (151)
+...+++.++|.||||+|||+ +.++..++.|++++.. ..++||++++|+++++. .+ ....++..+...+...|
T Consensus 38 ~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g 113 (169)
T 1obo_A 38 QAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 113 (169)
T ss_dssp TCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTT
T ss_pred cCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCC
Confidence 334678999999999999996 6677889999998864 37899999999997652 22 24456788999999999
Q ss_pred cEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 89 MLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 89 ~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
+.+++.-...++.+.....+..+.+.|. .. + ...+++.+.+++.++++.+.+.+
T Consensus 114 ~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~--~-~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 114 GKTVGYWSTDGYDFNDSKALRNGKFVGL-AL--D-EDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp CEECCCEECTTCCCSCCTTEETTEESSE-EE--C-TTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CEEEEeecCCCcccccchhhcCCceeeE-Ee--e-CCCccccCHHHHHHHHHHHHHHh
Confidence 9998741111111110001111112222 11 1 11245678899999999987654
No 42
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.32 E-value=5.9e-12 Score=92.40 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=64.6
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh----hhccCCCCcEEEEEccCCCCc-----c-----H
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW----ASQALAGKPAGIFWSTGFHGG-----G-----Q 73 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~----~~~~l~gK~~~~f~s~g~~~g-----~-----~ 73 (151)
.|+... .+++.+||+|||++|+||+++|+.+|.||||+.... ....|+||++.+++++|+... + -
T Consensus 40 ~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~ 118 (177)
T 3ha2_A 40 FNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTI 118 (177)
T ss_dssp CCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCH
T ss_pred ccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCH
Confidence 344444 889999999999999999999999999999985431 134799999999999876421 1 1
Q ss_pred HHHHHHHHHHHHhcCcEEecC
Q 031886 74 ELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 74 ~~~l~~~~~~l~~~g~~~v~~ 94 (151)
+..+..+...+...||.+++.
T Consensus 119 ~~~l~p~~~~~~~~G~~~~~~ 139 (177)
T 3ha2_A 119 SELMRPFEAFANKTKMMYLPI 139 (177)
T ss_dssp HHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHhCCCeEeCe
Confidence 233444566677889988864
No 43
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.30 E-value=8.4e-12 Score=102.38 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=82.5
Q ss_pred CCCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh-----hhccCCCCcEEEEEccCCCCcc--------HH
Q 031886 8 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-----ASQALAGKPAGIFWSTGFHGGG--------QE 74 (151)
Q Consensus 8 ~~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~-----~~~~l~gK~~~~f~s~g~~~g~--------~~ 74 (151)
+|+... .+++.+||+|||++|+||+++|+.+|+||||+.... ....|+||++.+++++|+..+. ..
T Consensus 281 ~d~~~~-~~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~ 359 (413)
T 3l9w_A 281 IDIAAE-QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFD 359 (413)
T ss_dssp CCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGG
T ss_pred HHHHHH-HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCch
Confidence 444444 889999999999999999999999999999985431 1235899999999987653211 12
Q ss_pred HHHHHHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031886 75 LTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 75 ~~l~~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~ 148 (151)
..+..+...+...||.+++.-+. +|+ ....+++..+.+.++.+++.+.+.+
T Consensus 360 ~~l~~l~~~~~~~G~~~l~~~~~----------------~g~-------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 360 VLSQPLQATAIYCGLNWLPPFAM----------------HCT-------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp GGGHHHHHHHHHTTCEECCCEEE----------------CCS-------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeecceEEE----------------cCC-------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 23456667778889998864211 222 0123445567788899998887764
No 44
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.26 E-value=4.7e-11 Score=87.07 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=87.9
Q ss_pred CCCCCChHHHhhCCEeEEeccccC-Ccch--------HHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC-Cc-cHHHHH
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRF-GVMA--------AQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTA 77 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~-~~~~--------~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-~~~~~l 77 (151)
++.+.+.+++.++|.||||+|||+ +.++ ..++.|++++.. ..++||++++|++++.. .+ ....++
T Consensus 35 ~~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~ 110 (179)
T 1yob_A 35 NVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDAL 110 (179)
T ss_dssp EGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHH
T ss_pred EhhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHH
Confidence 344445778999999999999999 8899 899999999864 37999999999996542 12 234567
Q ss_pred HHHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 78 LTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 78 ~~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
..+...+...|+.+++.-...++.|.....+..+.+.|. .. +. ..+++.+.++++++.+.+...
T Consensus 111 ~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl-~~--d~-~~~~~~~~~~i~~w~~~l~~~ 174 (179)
T 1yob_A 111 GELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGL-AL--DL-DNQSGKTDERVAAWLAQIAPE 174 (179)
T ss_dssp HHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSE-EE--CT-TTCGGGHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceecc-cc--CC-CCCCcccHHHHHHHHHHHHHH
Confidence 889999999999999753333333222222222233333 11 11 124466888899998887643
No 45
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.26 E-value=8.4e-11 Score=85.43 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=84.4
Q ss_pred CChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC--ccHHHHHHHHHHHHHhcCc
Q 031886 13 IRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG--GGQELTALTAVTQLAHHGM 89 (151)
Q Consensus 13 ~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~--g~~~~~l~~~~~~l~~~g~ 89 (151)
...+++.++|.||||+||| .+.++..++.|++.+.. ..++||++++|++++..+ .....++..+...+...|+
T Consensus 38 ~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~ 113 (175)
T 1ag9_A 38 SSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGA 113 (175)
T ss_dssp CCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTC
T ss_pred CChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCC
Confidence 3467899999999999997 58888999999999864 379999999999965321 1123568899999999999
Q ss_pred EEecCCCCCCCCCccccccc-cccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 90 LFVPLGYTFGSGMFEMNEVK-GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 90 ~~v~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
.+++.-...++.|.....+. .+.+.|. ... ...+++.+.+++.++++.|.+.+
T Consensus 114 ~~v~~~~~~g~~~~~s~~~~~~~~~~gl-~~~---~~~~~~~~~~~i~~w~~~i~~~~ 167 (175)
T 1ag9_A 114 TIVGHWPTAGYHFEASKGLADDDHFVGL-AID---EDRQPELTAERVEKWVKQISEEL 167 (175)
T ss_dssp EECCCEECTTCCCSCCSCEEETTEESSE-EEC---TTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcccccchheeeCCeEEee-ecC---CCCcccccHHHHHHHHHHHHHHh
Confidence 99974222222111000010 1112222 121 12356788899999999987654
No 46
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.24 E-value=1e-11 Score=96.66 Aligned_cols=55 Identities=24% Similarity=0.261 Sum_probs=47.2
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhh---------hccCCCCcEEEEEccCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA---------SQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~ 69 (151)
.++|.+||+|||++|+||+++++.+|+||||+..... ...++||++.+++++|+.
T Consensus 88 ~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 88 QKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 5679999999999999999999999999999864321 246899999999998764
No 47
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.22 E-value=7.7e-11 Score=85.40 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=83.1
Q ss_pred ChHHHhhCCEeEEeccccC-Ccc----hHHHHHHH-HHhhhhhhhccCCCCcEEEEEccCCCC--ccHHHHHHHHHHHHH
Q 031886 14 RPHQLKEADGFLFGFPSRF-GVM----AAQCKAFF-DATYELWASQALAGKPAGIFWSTGFHG--GGQELTALTAVTQLA 85 (151)
Q Consensus 14 ~~~~l~~aD~iIlgsPtY~-~~~----~~~~K~fl-Drl~~~~~~~~l~gK~~~~f~s~g~~~--g~~~~~l~~~~~~l~ 85 (151)
+.+++.++|.||||+|||+ +.+ +..++.|+ +++.. ..++||++++|++++..+ .....++..+...+.
T Consensus 39 ~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~ 114 (173)
T 2fcr_A 39 DPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFA 114 (173)
T ss_dssp CGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHH
T ss_pred ChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHH
Confidence 4577899999999999999 899 89999999 98864 379999999999964321 122356788899999
Q ss_pred hcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 86 HHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 86 ~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
..|+.+++.-...++.+.....+..+.+.|. .... ...++.+.+++.++.+.+.+.+
T Consensus 115 ~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 115 KQGAKPVGFSNPDDYDYEESKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp HTTCEEECCBCGGGSCCSCCTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEeecccCCcccccchhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHHh
Confidence 9999999752222222111111222223333 1211 1134457788888888876543
No 48
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.22 E-value=3.9e-11 Score=87.55 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=85.2
Q ss_pred CCCCCChHHHhhCCEeEEeccccC-Ccch--------HHHHHHHHHhhhhhhhccCCCCcEEEEEccCC--CCccHHHHH
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRF-GVMA--------AQCKAFFDATYELWASQALAGKPAGIFWSTGF--HGGGQELTA 77 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~-~~~~--------~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~--~~g~~~~~l 77 (151)
++.+...+++.++|.||||+|||+ +.++ ..++.|++++.. ..++||++++|++++. ++.....+.
T Consensus 36 ~~~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~ 111 (182)
T 2wc1_A 36 NVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNAL 111 (182)
T ss_dssp EGGGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHH
T ss_pred EcccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHH
Confidence 344445678999999999999999 8888 789999999864 3799999999999754 221224467
Q ss_pred HHHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031886 78 LTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 78 ~~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~ 147 (151)
..+...+...|+.+++.-...++.|.....+..+.+.|.. . +. ...++.+.+++..+.+.|.+.+.
T Consensus 112 ~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~-~--d~-~~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 112 FFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLA-L--DQ-DNQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp HHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEE-E--CT-TTCGGGHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeee-c--cC-CCCccccHHHHHHHHHHHHHHHh
Confidence 8888999999999997532222221111111111222321 1 10 11224467888889888876553
No 49
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.18 E-value=1.5e-10 Score=87.86 Aligned_cols=55 Identities=29% Similarity=0.283 Sum_probs=47.1
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh---------hhccCCCCcEEEEEccCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---------ASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~ 69 (151)
.+++.+||+|||++|+||+++++.+|+||||+.... ....|+||++.+++++|+.
T Consensus 87 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 87 QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 677999999999999999999999999999985421 1257999999999998754
No 50
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.17 E-value=5.7e-11 Score=89.83 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=60.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhh-hh-------------------hccCCCCcEEEEEccCCCCc---
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA-------------------SQALAGKPAGIFWSTGFHGG--- 71 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~-~~-------------------~~~l~gK~~~~f~s~g~~~g--- 71 (151)
.+++.+||+|||++|+||+++++.+|+||||+... |. .+.|+||++.++.++|+...
T Consensus 78 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~ 157 (218)
T 3rpe_A 78 IENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFT 157 (218)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHH
T ss_pred HHHHHhCCEEEEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhc
Confidence 78999999999999999999999999999998543 11 13579999999999876521
Q ss_pred --c------H-HHHHHHHHHHHHhcCcEEecC
Q 031886 72 --G------Q-ELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 72 --~------~-~~~l~~~~~~l~~~g~~~v~~ 94 (151)
+ . +..+..+...+...||..++.
T Consensus 158 ~~g~~~~g~~~~~~l~p~~~~l~f~G~~~l~~ 189 (218)
T 3rpe_A 158 DPEQFFHGVGVDGVYLPFHKANQFLGMKPLPT 189 (218)
T ss_dssp CTTSTTTTCHHHHHTHHHHHHHHHTTCEECCC
T ss_pred ccccccccCCHHHHHHHHHHHHHhCCCEEece
Confidence 1 0 112233566777889988864
No 51
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.15 E-value=7.6e-11 Score=85.10 Aligned_cols=109 Identities=10% Similarity=-0.077 Sum_probs=79.3
Q ss_pred CCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
+.+.+.+++.++|.||||+||| ++.++..++.|++.+... ....++||++++|+++....++.......+...|...|
T Consensus 46 ~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G 124 (167)
T 1ykg_A 46 AGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELG 124 (167)
T ss_dssp GGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHT
T ss_pred hhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCC
Confidence 3344466788999999999999 789999999999998631 01358999999999643222333345788888888889
Q ss_pred cEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031886 89 MLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 89 ~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~ 148 (151)
+.++..... .++++.++++++++++++.++.
T Consensus 125 ~~~v~~~~~-----------------------------~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 125 GERLLDRVD-----------------------------ADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp CEESSCCEE-----------------------------ECTTCHHHHHHHHHHHHHHHHT
T ss_pred CeEeeccee-----------------------------cCCCcHHHHHHHHHHHHHHHHh
Confidence 988854211 1234678888999998877654
No 52
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.08 E-value=2.4e-10 Score=82.23 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=54.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..++.++|.||||+|+|++++++.++.|++++ .++||++++|+++|+.+. ..++..+...+. +..++
T Consensus 73 ~~~l~~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~--g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 73 LFHPEKYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGSGI--GNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp CSCGGGCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCCS--HHHHHHHHHHCT--TSEEC
T ss_pred ccChhhCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCCc--cHHHHHHHHHcC--CCEee
Confidence 46789999999999999999999999999985 689999999999987432 245677777654 55655
No 53
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.05 E-value=5.1e-10 Score=81.34 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=54.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..++.++|.||||+|+|++++++.++.|++++ .++||++++|+++|+.+. ..++..+...+. +..+.
T Consensus 82 ~~~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~--g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 82 KENIGTYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSSI--GNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp CTTGGGCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCCS--HHHHHHHHHHST--TSEEC
T ss_pred cccHhHCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCCc--chHHHHHHHHcC--CCeec
Confidence 35789999999999999999999999999997 589999999999876532 345677777654 45544
No 54
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.04 E-value=1.6e-10 Score=82.12 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=51.9
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..++.++|+||||+|+|++++++.++.|++++. .+.+|++++|+++|+..|+ ++..+...+. +..++
T Consensus 71 ~~~l~~~d~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~g~---~~~~l~~~~~--~~~~~ 137 (151)
T 3edo_A 71 NIDYNNYDLILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNHKA---YVSHFNEWAD--GLNVI 137 (151)
T ss_dssp CCCGGGCSEEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCHHH---HHHHHHHHTT--TSEEE
T ss_pred hhCHhhCCEEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCCCc---HHHHHHHHcC--CCeee
Confidence 567899999999999999999999999999974 4788888888887653343 3455555543 45555
No 55
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=98.97 E-value=2e-11 Score=86.15 Aligned_cols=105 Identities=11% Similarity=-0.027 Sum_probs=73.9
Q ss_pred hHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
.+++.++|.||||+||| ++.++..++.|++.+... ...++||++++|+++....++...+...+...+...|+.++.
T Consensus 41 ~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~ 118 (147)
T 2hna_A 41 LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTG 118 (147)
T ss_dssp SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECS
T ss_pred HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEee
Confidence 45677899999999999 899999999999998642 126899999999952110011112346777777888998886
Q ss_pred CCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031886 94 LGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 146 (151)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~ 146 (151)
..... ...+++++.++++++++++++.+
T Consensus 119 ~~~~~-------------------------d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 119 ETLKI-------------------------NILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp SCBCC-------------------------CCSSCCSSCSCCHHHHHHHHHHH
T ss_pred eeEEE-------------------------ecCCCCCcHHHHHHHHHHHHHHh
Confidence 54332 12345566777888888887654
No 56
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=98.93 E-value=1.7e-09 Score=77.40 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=74.7
Q ss_pred CCCChHHHhhCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCC-Ccc-HHHHHHHHHHHHHhc
Q 031886 11 PVIRPHQLKEADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GGG-QELTALTAVTQLAHH 87 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g~-~~~~l~~~~~~l~~~ 87 (151)
.+.+..++.++|.||||+|||+ +.++..++.|++.+... .++||++++|+++... .++ ...+...+...+..
T Consensus 35 ~~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~~----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~- 109 (164)
T 2bmv_A 35 AKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEAS----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA- 109 (164)
T ss_dssp GGCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCTH----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT-
T ss_pred ccCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhhh----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh-
Confidence 3445678999999999999997 66788899999987542 5889999999983221 121 12345677776665
Q ss_pred CcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031886 88 GMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 145 (151)
Q Consensus 88 g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~ 145 (151)
..+++.....++.+.....+..+...+. .. + ...+++++.++++++++++.+.
T Consensus 110 -~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~--~-~~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 110 -GKVVGQTSTDGYHFEASKAVEGGKFVGL-VI--D-EDNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp -SEECCCEESTTCCCSCCTTEETTEESSE-EE--C-TTTCGGGHHHHHHHHHHHHTTT
T ss_pred -CEEEccccCCCccccchhhhhcCcccCc-cC--C-CCCccccCHHHHHHHHHHHHHh
Confidence 6666531111111110011111111121 11 1 1123467899999999998653
No 57
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=4.7e-09 Score=82.02 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=46.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhh-----------------hhccCCCCcEEEEEccCCC
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-----------------ASQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~-----------------~~~~l~gK~~~~f~s~g~~ 69 (151)
.+++.+||.|||.+|+||+++++.+|.||||+.... ..+.|+||.+.++.|+|+.
T Consensus 107 ~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 107 QEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 567999999999999999999999999999985321 1235789999999998754
No 58
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=98.79 E-value=4.2e-09 Score=77.93 Aligned_cols=103 Identities=13% Similarity=-0.025 Sum_probs=73.4
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCc-cHHHHHHHHHHHHHhcCcEEecC
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG-GQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g-~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
+++.++|.||||+|||+|.++..++.|++.+.... ...|+||.+++|+++....+ +.-.....+.+.|...|+.++..
T Consensus 63 ~~l~~~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~-~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~ 141 (191)
T 1bvy_F 63 GNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQAS-ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIAD 141 (191)
T ss_dssp TCCCSSSEEEEEECCBTTBCCTTTHHHHHHHHTCC-SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEE
T ss_pred hhhhhCCeEEEEEeecCCCcCHHHHHHHHHHHhcc-chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeec
Confidence 35788999999999999999999999999986431 13589999999996321111 12234678888888888877743
Q ss_pred CCCCCCCCccccccccccccccceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 031886 95 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQ-AFHQGKYVAEIAK 147 (151)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~-a~~lG~~la~~~~ 147 (151)
... . + . +++++. ++++++.|++.++
T Consensus 142 ~~~---------------------~--d--~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 142 RGE---------------------A--D--A---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp EEE---------------------E--E--T---TSCHHHHHHHHHHHHHHHHH
T ss_pred cEE---------------------E--e--c---CCChHHHHHHHHHHHHHHhc
Confidence 211 1 1 1 235655 8899999888775
No 59
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=98.62 E-value=1.1e-07 Score=64.60 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=56.6
Q ss_pred hCCEeEEeccccC-CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCcc-HHHHHHHHHHHHHhcCcEEecCCCC
Q 031886 20 EADGFLFGFPSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGG-QELTALTAVTQLAHHGMLFVPLGYT 97 (151)
Q Consensus 20 ~aD~iIlgsPtY~-~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~-~~~~l~~~~~~l~~~g~~~v~~g~~ 97 (151)
.+|.||||+|||+ +.++..++.|++. ++||.+++|++++...++ .......+...+.. .. .+.
T Consensus 32 ~~~~ii~g~pt~~~g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~---~~~ 96 (119)
T 2xod_A 32 IDEDFILITYTTGFGNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PI---VSK 96 (119)
T ss_dssp CCSCEEEEECCBTTTBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CE---EEE
T ss_pred cCCCEEEEEeecCCCcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---cc---EEE
Confidence 5999999999995 8999999999975 457899999984321111 11233444444321 00 000
Q ss_pred CCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 98 FGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
+ ...|++++++++++++++++.
T Consensus 97 ---------------------~----~~~~~~~d~~~~~~~~~~i~~ 118 (119)
T 2xod_A 97 ---------------------F----ELSGTNNDVEYFKERVREIAT 118 (119)
T ss_dssp ---------------------E----ETTCCHHHHHHHHHHHHHHTC
T ss_pred ---------------------E----ecCCCHHHHHHHHHHHHHhcc
Confidence 1 135889999999999998863
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=98.38 E-value=1.1e-06 Score=75.98 Aligned_cols=114 Identities=14% Similarity=-0.038 Sum_probs=82.5
Q ss_pred CCCCCCChHHHhhC-CEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHH
Q 031886 8 NDVPVIRPHQLKEA-DGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLA 85 (151)
Q Consensus 8 ~~~~~~~~~~l~~a-D~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~ 85 (151)
.++.+.+.+++.++ |.|||++||| .|.++..++.|++.+.... ...|+||.+++|+.+....++.-.....+...|.
T Consensus 85 ~~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~ 163 (682)
T 2bpo_A 85 ADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLS 163 (682)
T ss_dssp EETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHH
T ss_pred eehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHH
Confidence 34556667788899 9999999999 8999999999999987531 1359999999999532222333345678888889
Q ss_pred hcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031886 86 HHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 86 ~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~~~~~ 148 (151)
..|+..+..... . | ..+ ++..+.+..+++.+...+..
T Consensus 164 ~lGa~~l~~~~~---------------------~--D--~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 164 AAGAIRLGKLGE---------------------A--D--DGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp HTTCEECSCCEE---------------------E--E--TTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCeEeECcEE---------------------E--e--cCC-cccHHHHHHHHHHHHHHHHh
Confidence 999998864211 1 1 123 45677888999998776654
No 61
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=66.40 Aligned_cols=84 Identities=13% Similarity=-0.050 Sum_probs=63.7
Q ss_pred CCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH 87 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~ 87 (151)
++.+.+++++.+++.+||++||| .|.++..++.|++.+... ...++|+.+++||.+.+.....-.....+...|..+
T Consensus 75 ~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~l 152 (219)
T 3hr4_A 75 CMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHL 152 (219)
T ss_dssp EGGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHH
T ss_pred EcccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHC
Confidence 44555677899999999999999 788999999999998643 125799999999974322222233467888888888
Q ss_pred CcEEecC
Q 031886 88 GMLFVPL 94 (151)
Q Consensus 88 g~~~v~~ 94 (151)
|...+.+
T Consensus 153 Ga~~l~~ 159 (219)
T 3hr4_A 153 GASQLTP 159 (219)
T ss_dssp TCEESSC
T ss_pred CCCEeeC
Confidence 9998854
No 62
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=97.73 E-value=0.00011 Score=63.71 Aligned_cols=113 Identities=14% Similarity=-0.126 Sum_probs=77.9
Q ss_pred CCCCCChHHHhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhh------------------------------------
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWA------------------------------------ 51 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~------------------------------------ 51 (151)
++.+.++.++..++.+||++||| +|.++..++.|++.+.....
T Consensus 46 ~m~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 125 (688)
T 1tll_A 46 SMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRD 125 (688)
T ss_dssp ETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC-----------------
T ss_pred ecccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccc
Confidence 44555667788899999999999 99999999999999875410
Q ss_pred ----hccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCCCCCCCCccccccccccccccceecCCCCCCC
Q 031886 52 ----SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQP 127 (151)
Q Consensus 52 ----~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p 127 (151)
...|+|+.+++||.+.......-.....+.+.|...|...+..... . |. .
T Consensus 126 ~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~~~~---------------------~--D~--~- 179 (688)
T 1tll_A 126 NFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMRE---------------------G--DE--L- 179 (688)
T ss_dssp -----CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEE---------------------E--ET--T-
T ss_pred cccccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCceeeccee---------------------e--cc--C-
Confidence 1258999999999532111222234577888888889888753211 0 11 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 031886 128 TDLELQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 128 ~e~~l~~a~~lG~~la~~~~~ 148 (151)
..+.+.++.+++.+.+.+.+
T Consensus 180 -~g~e~~f~~W~~~~~~~l~~ 199 (688)
T 1tll_A 180 -CGQEEAFRTWAKKVFKAACD 199 (688)
T ss_dssp -TTHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHH
Confidence 12456688888888877654
No 63
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=97.72 E-value=6.6e-05 Score=64.29 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=54.7
Q ss_pred hCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 20 EADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 20 ~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
+++.+||+|||| .|.++..++.|++.+... ...|+||.+++||.+.+..++.-.....+...|..+|...+.
T Consensus 70 ~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~ 142 (618)
T 3qe2_A 70 DNALVVFCMATYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIF 142 (618)
T ss_dssp TTCEEEEEEECBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESS
T ss_pred cCcEEEEEcCccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEee
Confidence 489999999999 899999999999998642 147999999999942211122233457777788888998874
No 64
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=96.95 E-value=0.0004 Score=49.41 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHhhCCEeEEeccccC-----CcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC-ccH-HHHHHHHHHHHHhcCc
Q 031886 17 QLKEADGFLFGFPSRF-----GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG-GGQ-ELTALTAVTQLAHHGM 89 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~-----~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~-g~~-~~~l~~~~~~l~~~g~ 89 (151)
.+...+-+|+++|||. +.++.++..||+... ..++..++++++ ... |.. -.+...+.+.+. .
T Consensus 55 ~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsG-N~nfg~~Fc~A~d~ia~k~~---v 123 (153)
T 3n3a_C 55 RIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASG-NRNFGEAYGRAGDVIARKCG---V 123 (153)
T ss_dssp CCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEE-CGGGGGGTTHHHHHHHHHHT---C
T ss_pred ccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecC-CCchhHHHHHHHHHHHHHhC---C
Confidence 3457789999999997 999999999998542 224567888873 321 111 123444444432 1
Q ss_pred EEecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 90 LFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 90 ~~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
-++ +. -+..++++|+++++++.+++.+
T Consensus 124 P~l---~k-------------------------fEL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 124 PWL---YR-------------------------FELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp CEE---EE-------------------------EETTCCHHHHHHHHHHHHHHHH
T ss_pred CeE---EE-------------------------EeCCCCHHHHHHHHHHHHHHHh
Confidence 111 11 1146889999999999988765
No 65
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=96.92 E-value=0.0014 Score=45.68 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=54.2
Q ss_pred HhhCCEeEEecccc-CCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccH-HHHHHHHHHHHHhcCcEEecCC
Q 031886 18 LKEADGFLFGFPSR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ-ELTALTAVTQLAHHGMLFVPLG 95 (151)
Q Consensus 18 l~~aD~iIlgsPtY-~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~-~~~l~~~~~~l~~~g~~~v~~g 95 (151)
+...|.+|+++||| .|.++..+..|++.- +++..++++++....|.. -.+...+.. ..+..+.. .
T Consensus 41 ~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~---~~~~~~~~-~ 107 (139)
T 1rlj_A 41 DHVDTPFVLVTYTTNFGQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAKSADTISR---QYQVPILH-K 107 (139)
T ss_dssp SCCCSCEEEEECCBGGGBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHHHH---HHTCCEEE-E
T ss_pred cccCCCEEEEEcCcCCCcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHHHHHHHHH---HcCCCCcc-e
Confidence 55678899999999 799999999999642 235777777643211221 112223332 22332221 0
Q ss_pred CCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 96 YTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
+ + ..++++|.++++++.+++.+
T Consensus 108 -----------------------~--e--l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 108 -----------------------F--E--LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp -----------------------E--E--TTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------E--E--EcCCHHHHHHHHHHHHHHHH
Confidence 1 1 24778999999999988874
No 66
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=60.81 E-value=14 Score=29.57 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHH-HHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKA-FFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~-flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
++.++.+.+.+....|.-+|.|+...-+++-- .+=.+.+ .....+.||.++++|. |.. | ..+...+..+|
T Consensus 72 ~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r-~~g~~l~gktvGIIGl-G~I-G------~~vA~~l~a~G 142 (381)
T 3oet_A 72 TDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE-RDGFSLRDRTIGIVGV-GNV-G------SRLQTRLEALG 142 (381)
T ss_dssp CTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHH-HTTCCGGGCEEEEECC-SHH-H------HHHHHHHHHTT
T ss_pred ccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHH-hcCCccCCCEEEEEeE-CHH-H------HHHHHHHHHCC
Confidence 34566788888888899999987654443321 1111111 1124789999999986 222 1 35555666789
Q ss_pred cEEec
Q 031886 89 MLFVP 93 (151)
Q Consensus 89 ~~~v~ 93 (151)
|.++.
T Consensus 143 ~~V~~ 147 (381)
T 3oet_A 143 IRTLL 147 (381)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 98875
No 67
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=59.45 E-value=49 Score=25.76 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=37.2
Q ss_pred eccccCCc--chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 27 GFPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 27 gsPtY~~~--~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..|+.|+. -.-+...++|-+.=..+.+.++|+.++.+|-. . ++..++...+..+|+.+.
T Consensus 123 ~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~------~-~va~Sl~~~~~~~G~~v~ 183 (321)
T 1oth_A 123 SIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDG------N-NILHSIMMSAAKFGMHLQ 183 (321)
T ss_dssp SSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCS------S-HHHHHHHTTTGGGTCEEE
T ss_pred CCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCc------h-hhHHHHHHHHHHcCCeEE
Confidence 46787754 24466777776543223357899998887751 1 355677766667777655
No 68
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=55.21 E-value=34 Score=26.48 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=41.1
Q ss_pred eccccCC---cchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 27 GFPSRFG---VMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 27 gsPtY~~---~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
..|+.|+ .-.-+...+.|-+.-..+.+.++|++++.+|-. . ..++..++...+..+|+.+.
T Consensus 122 ~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~--~---~~rva~Sl~~~~~~~G~~v~ 185 (308)
T 1ml4_A 122 EVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDL--K---YGRTVHSLAEALTFYDVELY 185 (308)
T ss_dssp SSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCT--T---TCHHHHHHHHHGGGSCEEEE
T ss_pred CCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCC--C---cCchHHHHHHHHHHCCCEEE
Confidence 4688874 346778888887653333457899998887742 1 12356777877778888766
No 69
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=54.34 E-value=40 Score=26.41 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=54.9
Q ss_pred hHHHhhCCEeEEeccccCCc-chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC---cE
Q 031886 15 PHQLKEADGFLFGFPSRFGV-MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG---ML 90 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~-~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g---~~ 90 (151)
.+.++++|.+|+=+|- |+ -..-.|+|++.+- -.++++++-... . ..++..|...+ ..
T Consensus 136 ~EAvk~AEi~IlftPf--G~~t~~Iakkii~~lp-----------EgAII~nTCTip---p---~~ly~~le~l~R~Dvg 196 (358)
T 2b0j_A 136 REAVEGADIVITWLPK--GNKQPDIIKKFADAIP-----------EGAIVTHACTIP---T---TKFAKIFKDLGREDLN 196 (358)
T ss_dssp HHHHTTCSEEEECCTT--CTTHHHHHHHHGGGSC-----------TTCEEEECSSSC---H---HHHHHHHHHTTCTTSE
T ss_pred HHHhcCCCEEEEecCC--CCCcHHHHHHHHhhCc-----------CCCEEecccCCC---H---HHHHHHHHHhCcccCC
Confidence 7889999999999995 66 5666788888763 234555532221 1 23333333322 33
Q ss_pred EecCCCCCCCCCccccccccccccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031886 91 FVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 144 (151)
Q Consensus 91 ~v~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~l~~a~~lG~~la~ 144 (151)
+.. |.. +..-|+....-.+...-+|+.+++|.+|+++...
T Consensus 197 IsS--~HP------------aaVPgt~Gq~~~g~~yAtEEqIeklveLaksa~k 236 (358)
T 2b0j_A 197 ITS--YHP------------GCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARG 236 (358)
T ss_dssp EEE--CBC------------SSCTTTCCCEEEEESSSCHHHHHHHHHHHHHHHS
T ss_pred eec--cCC------------CCCCCCCCccccccccCCHHHHHHHHHHHHHhCC
Confidence 332 111 1111111000022356799999999999998753
No 70
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=51.62 E-value=9.2 Score=27.99 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=26.4
Q ss_pred hHHHhh--CCEeEEeccccCC-cchHHHHHHHHHhhhhh
Q 031886 15 PHQLKE--ADGFLFGFPSRFG-VMAAQCKAFFDATYELW 50 (151)
Q Consensus 15 ~~~l~~--aD~iIlgsPtY~~-~~~~~~K~flDrl~~~~ 50 (151)
..++.+ ||.+|+|+|.+.. ++...++.+.+.+...|
T Consensus 182 ~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~ 220 (221)
T 3exr_A 182 LKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRIW 220 (221)
T ss_dssp GGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHHHHh
Confidence 344544 7899999999864 57777888877776655
No 71
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=47.47 E-value=16 Score=26.46 Aligned_cols=38 Identities=13% Similarity=-0.095 Sum_probs=26.6
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
++.+.++|.|||.||. .++.|++.+.. .+.+.+++++|
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l~~-----~l~~~~~~aVG 82 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWLKD-----QWPKATYYAVG 82 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHHTT-----CCCSSEEEESS
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHHHh-----hCcCCeEEEEC
Confidence 5567889999999997 66777777642 35555555444
No 72
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=46.60 E-value=57 Score=25.16 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=39.6
Q ss_pred ccccCCc---chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc-CcEEe
Q 031886 28 FPSRFGV---MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH-GMLFV 92 (151)
Q Consensus 28 sPtY~~~---~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~-g~~~v 92 (151)
.|++|++ -.-+...+.|-+.-..+.+.++|++++++|-. . ..++..++...+..+ |+.+.
T Consensus 119 vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~--~---~~rva~Sl~~~~~~~~G~~v~ 182 (306)
T 4ekn_B 119 VPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDL--K---YGRTVHSLVYALSLFENVEMY 182 (306)
T ss_dssp SCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCT--T---TCHHHHHHHHHHHTSSSCEEE
T ss_pred CCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCC--C---CCcHHHHHHHHHHhcCCCEEE
Confidence 5788763 45677777776543323357999999988752 1 123567777778888 88755
No 73
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=46.11 E-value=17 Score=27.04 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=27.2
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
++++.++|.|||.||. .++.|++.+...|. .+.+.+++++|
T Consensus 61 l~~l~~~d~vifTS~n-------aV~~~~~~l~~~~~--~~~~~~i~aVG 101 (269)
T 3re1_A 61 IFELLNYSAVIVVSKP-------AARLAIELIDEVWP--QPPMQPWFSVG 101 (269)
T ss_dssp HHTGGGSSEEEECSHH-------HHHHHHHHHHHHCS--SCCCSCEEESS
T ss_pred HHhccCCCEEEEECHH-------HHHHHHHHHHHhCC--CcccCEEEEEC
Confidence 3457889999999997 66777777654432 34445555554
No 74
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=45.94 E-value=17 Score=26.66 Aligned_cols=41 Identities=5% Similarity=-0.071 Sum_probs=27.4
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
+.++.++|.|||.||. .++.|++.+...|. .+.+.+++++|
T Consensus 53 l~~l~~~d~vifTS~~-------aV~~~~~~l~~~~~--~~~~~~i~aVG 93 (254)
T 4es6_A 53 MLDLDRYCAVVVVSKP-------AARLGLERLDRYWP--QPPQQTWCSVG 93 (254)
T ss_dssp HHTGGGCSEEEECSHH-------HHHHHHHHHHHHCS--SCCSCEEEESS
T ss_pred HHhccCCCEEEEECHH-------HHHHHHHHHHHhCC--CcccCEEEEEC
Confidence 4567889999999997 67777777654431 33445555554
No 75
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=43.34 E-value=33 Score=27.30 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=44.3
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHH-HHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCK-AFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 88 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K-~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g 88 (151)
++.++.+.+.+....|..+|.++....++.- ..+=.+.+.| ...+.||.++++|. |.. | ..+...+..+|
T Consensus 69 ~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-~~~l~g~tvGIIGl-G~I-G------~~vA~~l~~~G 139 (380)
T 2o4c_A 69 TDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-GADLAERTYGVVGA-GQV-G------GRLVEVLRGLG 139 (380)
T ss_dssp STTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-TCCGGGCEEEEECC-SHH-H------HHHHHHHHHTT
T ss_pred cchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-hcccCCCEEEEEeC-CHH-H------HHHHHHHHHCC
Confidence 3445677778888888888987654433221 1111111112 24799999999985 222 1 34455556778
Q ss_pred cEEec
Q 031886 89 MLFVP 93 (151)
Q Consensus 89 ~~~v~ 93 (151)
|.++.
T Consensus 140 ~~V~~ 144 (380)
T 2o4c_A 140 WKVLV 144 (380)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 76
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=42.55 E-value=17 Score=23.72 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 12 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 12 ~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
.++.+++.+||+||+++.+-. +.. .+|.||++.-..+
T Consensus 49 ~Lt~~~I~~AD~VIia~d~~v-----------~~~------~RF~gk~v~~~~v 85 (106)
T 2m1z_A 49 ELTEKDVNIGEVVIFAVDTKV-----------RNK------ERFDGKVVLEVPV 85 (106)
T ss_dssp CCCHHHHHHCSEEEEEESSCC-----------STH------HHHTTSEEEEECT
T ss_pred CCCHHHHhhCCEEEEeccccc-----------cch------hccCCCcEEEEcH
Confidence 456799999999999998743 111 2577999877766
No 77
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=38.07 E-value=1.2e+02 Score=24.12 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=35.6
Q ss_pred ccccCCc--chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 28 FPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 28 sPtY~~~--~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.|++|+. -.-+...+.|-+.=....+.++|+.++++|-. . .++..++...+..+|+.+.
T Consensus 149 vPVINa~~~~~HPtQaLaDl~Ti~E~~G~l~glkva~vGD~--~----nnva~Sl~~~~~~lG~~v~ 209 (365)
T 4amu_A 149 VPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDY--K----NNVGVSTMIGAAFNGMHVV 209 (365)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHHHSSCTTCEEEEESST--T----SHHHHHHHHHHHHTTCEEE
T ss_pred CCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC--C----cchHHHHHHHHHHcCCEEE
Confidence 4666642 23355666665432222356999999887752 1 1245777777777888765
No 78
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=37.81 E-value=23 Score=24.27 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031886 132 LQQAFHQGKYVAEIAKK 148 (151)
Q Consensus 132 l~~a~~lG~~la~~~~~ 148 (151)
-..+.++|+||++.|+-
T Consensus 118 EADaqEFGERiaeLAki 134 (162)
T 1f35_A 118 EADALEFGERLSDLAKI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35678999999999874
No 79
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=37.52 E-value=1.6e+02 Score=23.73 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhhhhhcc---CCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 37 AQCKAFFDATYELWASQA---LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 37 ~~~K~flDrl~~~~~~~~---l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
-+...++|-+.=..+.+. ++|+.+++++.+.-..|...++...+...+..+|+.+.
T Consensus 165 HPtQaLaDl~TI~E~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 165 HPTQAMADALHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp CHHHHHHHHHHHHHHTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred ChHHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 345555555432111233 78888888874321113324566777777778888765
No 80
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=37.36 E-value=8.2 Score=28.12 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=25.9
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEE
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 64 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~ 64 (151)
.++.++|.|||.|+. -++.|++++........+.+++++++|
T Consensus 33 ~~l~~~d~lifTS~n-------aV~~~~~~l~~~~~~~~l~~~~i~aVG 74 (229)
T 3p9z_A 33 LDPTPFNALIFTSKN-------AVFSLLETLKNSPKLKMLQNIPAYALS 74 (229)
T ss_dssp SCCTTCSEEEESCHH-------HHHHHHHHTTTCHHHHHHHTSCEEESS
T ss_pred CCcCcCCEEEEECHH-------HHHHHHHHHHhccchHHHcCCcEEEEC
Confidence 356789999999998 556676665421111234555655555
No 81
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=36.93 E-value=13 Score=29.62 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..|||||++|||
T Consensus 245 ~~aDGlIVSTPT 256 (365)
T 3pfn_A 245 VQGDGVIVSTPT 256 (365)
T ss_dssp ECSSEEEEECGG
T ss_pred EecCeEEEeCCc
Confidence 479999999999
No 82
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=34.79 E-value=26 Score=23.00 Aligned_cols=37 Identities=5% Similarity=-0.016 Sum_probs=28.1
Q ss_pred CCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 12 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 12 ~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
.++.+++.+||+||+.+-+---+ ..+|.||++.-..+
T Consensus 52 ~Lt~~~I~~Ad~VIiA~d~~v~~-----------------~~RF~GK~v~~~~v 88 (111)
T 2kyr_A 52 RLTAQDIAEATIIIHSVAVTPED-----------------NERFESRDVYEITL 88 (111)
T ss_dssp CCCHHHHHHCSEEEEEESSCCTT-----------------GGGGTTSCEEEEET
T ss_pred CCCHHHHHhCCEEEEEeCCCcCc-----------------hhhcCCCeEEEeCH
Confidence 45688999999999999874110 24789999987776
No 83
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=33.96 E-value=28 Score=22.67 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=27.6
Q ss_pred CCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 12 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 12 ~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
.++.+++.+||.||+.+-+-- | ..+|.||++.-..+
T Consensus 49 ~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v 84 (106)
T 2r48_A 49 KLTEEEIREADAIIIAADRSV-----------N-------KDRFIGKKLLSVGV 84 (106)
T ss_dssp CCCHHHHHHCSEEEEEESSCC-----------C-------CGGGTTSBEEEECH
T ss_pred CCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCH
Confidence 456889999999999988631 1 14799999977665
No 84
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=33.72 E-value=24 Score=25.22 Aligned_cols=44 Identities=7% Similarity=0.020 Sum_probs=26.9
Q ss_pred hHHHh--hCCEeEE-eccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLK--EADGFLF-GFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~--~aD~iIl-gsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
++++. ++|+||+ |.+.+.......+.+|+.+... +||+++.+++
T Consensus 67 ~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~ 113 (212)
T 3efe_A 67 LDECTLESKDLLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICG 113 (212)
T ss_dssp GGGCCCCTTCEEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETH
T ss_pred HHHCCccCCCEEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcH
Confidence 45555 8999998 3333334556777777777642 4556555554
No 85
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=33.60 E-value=1.1e+02 Score=20.81 Aligned_cols=53 Identities=8% Similarity=0.013 Sum_probs=33.4
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
++.......+..+|++|+.-..-...-...++.+++.+... ...+.++.++++
T Consensus 69 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~n 121 (206)
T 2bcg_Y 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGN 121 (206)
T ss_dssp TTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 34444466788999999977665444445566666666432 234677777776
No 86
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=32.95 E-value=1.2e+02 Score=23.31 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=39.7
Q ss_pred ccccCC---cchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc-CcEEe
Q 031886 28 FPSRFG---VMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH-GMLFV 92 (151)
Q Consensus 28 sPtY~~---~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~-g~~~v 92 (151)
.|+.|+ .-.-+...+.|-+.-..+.+.++|++++.+|-. . ..++..++...+..+ |+.+.
T Consensus 122 vPVINag~G~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~--~---~~rva~Sl~~~~~~~~g~~v~ 185 (310)
T 3csu_A 122 VPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL--K---YGRTVHSLTQALAKFDGNRFY 185 (310)
T ss_dssp CCEEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESCT--T---TCHHHHHHHHHHHTSSSCEEE
T ss_pred CCEEcCccCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCC--C---CCchHHHHHHHHHhCCCCEEE
Confidence 577764 346677778777643333467999999887741 1 123567778788888 88765
No 87
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=31.60 E-value=29 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=11.2
Q ss_pred ccCCcchHHHHHHHHHhhhh
Q 031886 30 SRFGVMAAQCKAFFDATYEL 49 (151)
Q Consensus 30 tY~~~~~~~~K~flDrl~~~ 49 (151)
.||++|+..+|+|++.+...
T Consensus 15 ~~~~~m~~~Lq~~L~~ll~r 34 (143)
T 3cpt_A 15 LYFQGSADDLKRFLYKKLPS 34 (143)
T ss_dssp -------CHHHHHHHHHGGG
T ss_pred hhhhhhHHHHHHHHHHHHhc
Confidence 48999999999999998653
No 88
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=31.48 E-value=28 Score=22.69 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=27.5
Q ss_pred CCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 12 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 12 ~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
.++.+++.+||.||+.+-+-- | ..+|.||++.-..+
T Consensus 49 ~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v 84 (106)
T 2r4q_A 49 KLTAQEIEDAPAIIVAADKQV-----------E-------MERFKGKRVLQVPV 84 (106)
T ss_dssp CCCHHHHHHCSCEEEEESSCC-----------C-------CGGGTTSBEEEECH
T ss_pred CCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCH
Confidence 456889999999999988631 1 14789999977665
No 89
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=31.36 E-value=1.2e+02 Score=24.65 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=25.3
Q ss_pred ccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCCC
Q 031886 53 QALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT 97 (151)
Q Consensus 53 ~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~ 97 (151)
..|.||++++++- +.. ...+..+|..+||.++..++.
T Consensus 328 ~~l~GKrv~i~~~-----~~~---~~~l~~~L~ElGmevv~~gt~ 364 (483)
T 3pdi_A 328 ARLEGKRVLLYTG-----GVK---SWSVVSALQDLGMKVVATGTK 364 (483)
T ss_dssp HHHTTCEEEEECS-----SSC---HHHHHHHHHHHTCEEEEECBS
T ss_pred HHhcCCEEEEECC-----Cch---HHHHHHHHHHCCCEEEEEecC
Confidence 4689999998763 112 234556677899999976543
No 90
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=31.12 E-value=15 Score=28.06 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 171 ~~~DGlIVsTPT 182 (278)
T 1z0s_A 171 IRCDGFIVATQI 182 (278)
T ss_dssp EEESEEEEEESG
T ss_pred EecCeEEEecCC
Confidence 479999999997
No 91
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=31.04 E-value=1.6e+02 Score=21.88 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 56 AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 56 ~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
.+++.++|=| +. |.-..++++.+.+-...+.+++.
T Consensus 4 ~~~~IgvfDS--Gv--GGltv~~~i~~~lP~~~~iy~~D 38 (269)
T 3ist_A 4 MKQAIGFIDS--GV--GGLTVVREVLKQLPHEQVYYLGD 38 (269)
T ss_dssp SCCCEEEEES--SS--TTHHHHHHHHHHCTTCCEEEEEC
T ss_pred CCCcEEEEEC--Cc--cHHHHHHHHHHHCCCCcEEEEeC
Confidence 3578899987 22 34456788888888778888764
No 92
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=30.52 E-value=75 Score=24.41 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=41.3
Q ss_pred eccccCC---cchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhc-CcEEe
Q 031886 27 GFPSRFG---VMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH-GMLFV 92 (151)
Q Consensus 27 gsPtY~~---~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~-g~~~v 92 (151)
..|+.|+ .-.-+...+.|-+.-..+.+.++|++++.+|-. . ..++..++...+..+ |+.+.
T Consensus 116 ~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~--~---~~rva~Sl~~~~~~~~g~~v~ 180 (299)
T 1pg5_A 116 DIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDL--K---YARTVNSLLRILTRFRPKLVY 180 (299)
T ss_dssp SSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECC--S---SCHHHHHHHHHGGGSCCSEEE
T ss_pred CCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCC--C---CCchHHHHHHHHHhCCCCEEE
Confidence 3578887 346677788887643333468999999988852 1 123567777778888 88765
No 93
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=30.17 E-value=1e+02 Score=20.52 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=41.9
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 89 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~ 89 (151)
+.......+..+|++|+.-..-...-...++.+++.+... ...++++.++++=--.........+.........++
T Consensus 84 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF 159 (189)
T ss_dssp SCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred HhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC
Confidence 3444456678899999876554333334455566655432 345778888876211101001112344444455566
Q ss_pred EEec
Q 031886 90 LFVP 93 (151)
Q Consensus 90 ~~v~ 93 (151)
.++.
T Consensus 160 ~~~~ 163 (189)
T 2gf9_A 160 EFFE 163 (189)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6554
No 94
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=29.73 E-value=2.1e+02 Score=22.81 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhhhhc---cCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 38 QCKAFFDATYELWASQ---ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 38 ~~K~flDrl~~~~~~~---~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
+...+.|-+.=..+.+ .++|+++++++.+-...|...+...++...+..+|+.+.
T Consensus 169 PtQaLaDl~TI~E~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~ 226 (399)
T 3q98_A 169 PTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 226 (399)
T ss_dssp HHHHHHHHHHHHHHHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEE
T ss_pred cHHHHHHHHHHHHHhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEE
Confidence 4555555532111112 378899988875321123233455777777777888755
No 95
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=28.35 E-value=2.1e+02 Score=22.19 Aligned_cols=48 Identities=19% Similarity=0.066 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 38 QCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 38 ~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
+...+.|-+.=....+.++|++++++|-. .++..++...+..+|+.+.
T Consensus 138 PtQaLaDl~Ti~e~~g~l~glkva~vGD~-------~rva~Sl~~~~~~~G~~v~ 185 (323)
T 3gd5_A 138 PCQVVADLLTIRENFGRLAGLKLAYVGDG-------NNVAHSLLLGCAKVGMSIA 185 (323)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCEEEEESCC-------CHHHHHHHHHHHHHTCEEE
T ss_pred cHHHHHHHHHHHHHhCCCCCCEEEEECCC-------CcHHHHHHHHHHHcCCEEE
Confidence 44555554322212357899999877742 2345666666677787755
No 96
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=27.34 E-value=40 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC 39 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~ 39 (151)
.+++ ++.|.+||.||+|--..+-++-+.+
T Consensus 175 ~p~a-l~AI~~AD~IvlgPGSl~TSI~P~L 203 (326)
T 2q7x_A 175 SRRV-VQTILESDMIVLGPGSLFTSILPNI 203 (326)
T ss_dssp CSHH-HHHHHHCSEEEECSSCCCCCCHHHH
T ss_pred CHHH-HHHHHhCCEEEECCCCCHHHHhhhh
Confidence 3555 8999999999999988888775543
No 97
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=27.19 E-value=1.9e+02 Score=22.35 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=21.5
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhh
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 48 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~ 48 (151)
+.+.+||.||++.|.+ .++.+++.+..
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~~ 121 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMKP 121 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHGG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHHH
Confidence 4578899999999985 67777877754
No 98
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=27.10 E-value=1.3e+02 Score=20.10 Aligned_cols=77 Identities=10% Similarity=-0.033 Sum_probs=43.5
Q ss_pred CChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 13 IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 13 ~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.....+..+|++|+.-..-...-...++.+++.+... ...+++..++++=--.........+.....+...++.++
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 3355678899999987655544445566666666432 345778877776211000011123455555666676665
Q ss_pred c
Q 031886 93 P 93 (151)
Q Consensus 93 ~ 93 (151)
.
T Consensus 164 ~ 164 (192)
T 2fg5_A 164 E 164 (192)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=26.97 E-value=42 Score=24.21 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=28.5
Q ss_pred ChHHHhhCCEeE---Eecccc-CCcchHHHHHHHHHhhh
Q 031886 14 RPHQLKEADGFL---FGFPSR-FGVMAAQCKAFFDATYE 48 (151)
Q Consensus 14 ~~~~l~~aD~iI---lgsPtY-~~~~~~~~K~flDrl~~ 48 (151)
+-+++..||.++ -++|.| ..++...+.-.+||+..
T Consensus 147 tneel~~cd~~l~~Ip~~~eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 147 PDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp CHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHTT
T ss_pred CHHHHHhcCEEEccCCCCCCCCccCHHHHHHHHHHHHcC
Confidence 467888999887 677888 48899999999999854
No 100
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=26.96 E-value=1.1e+02 Score=23.48 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=38.7
Q ss_pred ccccCCc---chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 28 FPSRFGV---MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 28 sPtY~~~---~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.|+.|++ -.-+...+.|-+.=..+.+.++|++++++|-. ...++..++...+..+|+.+.
T Consensus 115 vPVINagdg~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~-----~~~rva~Sl~~~~~~~G~~v~ 177 (304)
T 3r7f_A 115 IPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGDI-----KHSRVARSNAEVLTRLGARVL 177 (304)
T ss_dssp SCEEESCCTTSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC-----TTCHHHHHHHHHHHHTTCEEE
T ss_pred CCEEeCCCCCCcCcHHHHHHHHHHHHHhCCCCCCEEEEEcCC-----CCcchHHHHHHHHHHcCCEEE
Confidence 4777763 35577777776543222357999999888752 112456777777777888754
No 101
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=26.68 E-value=1.5e+02 Score=19.99 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+.......+.++|++|+.-..-...-...++.+++++.. .....++++.++++
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~N 138 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFAN 138 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEE
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEE
Confidence 333434567899999997665443334455566665532 12356788888887
No 102
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=26.59 E-value=92 Score=20.25 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=31.6
Q ss_pred CCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 11 PVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
.......+..+|++|+.-..-...-...++.++..+.. ...+.+..++++
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~n 121 (181)
T 3tw8_B 72 RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVGN 121 (181)
T ss_dssp SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----HCTTSEEEEEEE
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 33445567889999997665444444455566666543 345677777776
No 103
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=26.14 E-value=69 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=23.4
Q ss_pred cCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 54 ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 54 ~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
+|+||++.+-|.+|+++=| ..+...|...|..++-.
T Consensus 3 ~l~gK~alVTGaa~~~GIG-----~aiA~~la~~Ga~Vvi~ 38 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIA-----FGVAKVLDQLGAKLVFT 38 (256)
T ss_dssp CCTTCEEEEECCCSTTCHH-----HHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCCCchHH-----HHHHHHHHHCCCEEEEE
Confidence 6899998777654332212 45566667889887743
No 104
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=25.78 E-value=38 Score=26.58 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.6
Q ss_pred CCCChHHHhhCCEeEEeccccCCcchHHH
Q 031886 11 PVIRPHQLKEADGFLFGFPSRFGVMAAQC 39 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~~~~~~~~ 39 (151)
+++ ++.|.+||.||+|--..+-++-+.+
T Consensus 169 p~~-l~AI~~AD~IvlgPGS~~TSI~P~L 196 (332)
T 2ppv_A 169 NEA-IEALEQADLIVLGPGSLYTSVISNL 196 (332)
T ss_dssp HHH-HHHHHHCSEEEECSSCCCCCCHHHH
T ss_pred HHH-HHHHHhCCEEEECCCCCHHHhcccc
Confidence 444 8899999999999988888775543
No 105
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=25.73 E-value=33 Score=27.05 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC 39 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~ 39 (151)
.+++ ++.|.+||.||+|--..+-++-+.+
T Consensus 179 ~p~a-l~AI~~AD~IvlgPGSlyTSI~P~L 207 (341)
T 2p0y_A 179 VQPV-IDAIMAADQIVLGPGSLFTSILPNL 207 (341)
T ss_dssp CHHH-HHHHHHCSEEEECSSCCCCCCHHHH
T ss_pred CHHH-HHHHHhCCEEEECCCCCHHHhcccc
Confidence 3444 8899999999999988888775543
No 106
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=25.46 E-value=1.2e+02 Score=23.08 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=44.6
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH-----HHHHHHHhh--------hhhhh--------ccCCCCcEEEEEccCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ-----CKAFFDATY--------ELWAS--------QALAGKPAGIFWSTGF 68 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~-----~K~flDrl~--------~~~~~--------~~l~gK~~~~f~s~g~ 68 (151)
++.++++...+....|.-+|.|+...-+. +-++..++. ..|.. ..+.||.++++|. |.
T Consensus 87 ~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~-G~ 165 (330)
T 2gcg_A 87 IDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGL-GR 165 (330)
T ss_dssp CTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECC-SH
T ss_pred cccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECc-CH
Confidence 34556778888888999999887554333 222211111 12321 3588999999886 22
Q ss_pred CCccHHHHHHHHHHHHHhcCcEEec
Q 031886 69 HGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 69 ~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
. | ..+...+..+|+.++.
T Consensus 166 i-G------~~iA~~l~~~G~~V~~ 183 (330)
T 2gcg_A 166 I-G------QAIARRLKPFGVQRFL 183 (330)
T ss_dssp H-H------HHHHHHHGGGTCCEEE
T ss_pred H-H------HHHHHHHHHCCCEEEE
Confidence 2 1 3444555677877664
No 107
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=25.28 E-value=74 Score=24.52 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=46.7
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH-----HHHHHHHhhh---------hhh----hccCCCCcEEEEEccCCCCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ-----CKAFFDATYE---------LWA----SQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~-----~K~flDrl~~---------~~~----~~~l~gK~~~~f~s~g~~~g 71 (151)
++.++.+.+.+....|.-+|.|+...-++ +-.+..++.. .|. ...+.||.++++|. |.. |
T Consensus 72 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGl-G~I-G 149 (324)
T 3evt_A 72 VDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGT-GQI-G 149 (324)
T ss_dssp CTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECC-SHH-H
T ss_pred ccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECc-CHH-H
Confidence 34566788888899999999876544332 2222211111 232 23689999999986 221 1
Q ss_pred cHHHHHHHHHHHHHhcCcEEec
Q 031886 72 GQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 72 ~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+...+..+||.++.
T Consensus 150 ------~~vA~~l~~~G~~V~~ 165 (324)
T 3evt_A 150 ------QSLAAKASALGMHVIG 165 (324)
T ss_dssp ------HHHHHHHHHTTCEEEE
T ss_pred ------HHHHHHHHhCCCEEEE
Confidence 3455566678998885
No 108
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=24.88 E-value=19 Score=28.80 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=11.0
Q ss_pred hhCCEeEEeccc
Q 031886 19 KEADGFLFGFPS 30 (151)
Q Consensus 19 ~~aD~iIlgsPt 30 (151)
..+||||++|||
T Consensus 227 ~~~DGliVsTPT 238 (388)
T 3afo_A 227 TTADGVALATPT 238 (388)
T ss_dssp EEEEEEEEECTG
T ss_pred ecCCeEEEeCCC
Confidence 479999999998
No 109
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=24.85 E-value=99 Score=20.91 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=28.7
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+.......+..+|++|+.--.-...-...++.+++.+... ...+++..++++
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~n 146 (199)
T 3l0i_B 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGN 146 (199)
T ss_dssp CCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-C
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEE
Confidence 3344455678899999976655544445566666666432 234667766665
No 110
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=24.33 E-value=2.4e+02 Score=21.58 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=38.2
Q ss_pred ccccCCc--chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 28 FPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 28 sPtY~~~--~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.|+.|+. -.-+...++|-+.=..+.+.++|++++.+|-. ..++..++...+..+|+.+.
T Consensus 117 vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~------~~rva~Sl~~~~~~~g~~v~ 177 (307)
T 2i6u_A 117 VPVINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDG------ANNMAHSLLLGGVTAGIHVT 177 (307)
T ss_dssp SCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT------TSHHHHHHHHHHHHTTCEEE
T ss_pred CCEEcCCCCCcCccHHHHHHHHHHHHhCCcCCeEEEEECCC------CcCcHHHHHHHHHHCCCEEE
Confidence 5777643 24466677776543223367999999887751 12456777777778888766
No 111
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=24.24 E-value=1.5e+02 Score=19.12 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=40.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
...+.++|++|+.-..-...-...++.+++.+... .-.+++..++++=--.........+.....+...++.++.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 44578899999876654443344455666655432 2356777777763111010111234555555666766654
No 112
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=24.11 E-value=1.6e+02 Score=22.83 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh--------hccCCCCcEEEEEccCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA--------SQALAGKPAGIFWSTGF 68 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~--------~~~l~gK~~~~f~s~g~ 68 (151)
++.++.+...+....|.-+|.|+....+++ -.+..++. ..|. ...+.||.++++|. |.
T Consensus 105 ~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGl-G~ 183 (345)
T 4g2n_A 105 YDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGM-GR 183 (345)
T ss_dssp CTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESC-SH
T ss_pred ccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEe-Ch
Confidence 455678888899999999998876544333 22222221 1232 24689999999986 22
Q ss_pred CCccHHHHHHHHHHHHHhcCcEEecC
Q 031886 69 HGGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 69 ~~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
. | ..+...+..+||.++..
T Consensus 184 I-G------~~vA~~l~~~G~~V~~~ 202 (345)
T 4g2n_A 184 I-G------RAIATRARGFGLAIHYH 202 (345)
T ss_dssp H-H------HHHHHHHHTTTCEEEEE
T ss_pred h-H------HHHHHHHHHCCCEEEEE
Confidence 2 1 35555667889988853
No 113
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=23.98 E-value=1.2e+02 Score=19.32 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=28.7
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
..-+..+|++|+.-..-...-...++.+++.+... ...+.++.++++
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~n 119 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGN 119 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEE
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 45678899998876554433344556666666432 345667766666
No 114
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=23.81 E-value=1.6e+02 Score=19.57 Aligned_cols=74 Identities=7% Similarity=-0.019 Sum_probs=39.0
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+..+|++|+.--.-...-...++.+++.+... ...+.+..++++=--...................++.++.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFE 164 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 4577899999865543333334455666665432 3467788877762111011111223444444556666654
No 115
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=23.64 E-value=44 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=20.1
Q ss_pred CCEeEEeccccCC-cchHHHHHHHHHhh
Q 031886 21 ADGFLFGFPSRFG-VMAAQCKAFFDATY 47 (151)
Q Consensus 21 aD~iIlgsPtY~~-~~~~~~K~flDrl~ 47 (151)
||+||+|++.+.. ++...++.+.+.+.
T Consensus 185 ad~ivvG~~I~~a~dp~~~~~~~~~~i~ 212 (216)
T 1q6o_A 185 IHVFIAGRSIRDAASPVEAARQFKRSIA 212 (216)
T ss_dssp CSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCEEEEeehhcCCCCHHHHHHHHHHHHH
Confidence 7999999999864 55566777666553
No 116
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=23.52 E-value=1.7e+02 Score=19.66 Aligned_cols=54 Identities=6% Similarity=0.062 Sum_probs=31.4
Q ss_pred CCCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 9 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 9 ~~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
++.......+..+|++|+.--.-...-...++.++..+... ....++++.++++
T Consensus 84 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~n 137 (201)
T 3oes_A 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPVVLVGN 137 (201)
T ss_dssp TTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred chHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEE
Confidence 34444466788899999866554433335556666665432 1235678877776
No 117
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=23.46 E-value=1.9e+02 Score=21.82 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 17 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 17 ~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
+=++.|.+|+.||+ ...+++-++= ..| .-+|.|+.+++-
T Consensus 61 ~~~~pDfvI~isPN--~a~PGP~~AR-----E~l---~~~~iP~IvI~D 99 (283)
T 1qv9_A 61 EDFEPDFIVYGGPN--PAAPGPSKAR-----EML---ADSEYPAVIIGD 99 (283)
T ss_dssp HHHCCSEEEEECSC--TTSHHHHHHH-----HHH---HTSSSCEEEEEE
T ss_pred hhcCCCEEEEECCC--CCCCCchHHH-----HHH---HhCCCCEEEEcC
Confidence 34579999999995 6677776651 110 248899998886
No 118
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=23.45 E-value=2.6e+02 Score=21.63 Aligned_cols=59 Identities=22% Similarity=0.128 Sum_probs=37.5
Q ss_pred ccccCCcc--hHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 28 FPSRFGVM--AAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 28 sPtY~~~~--~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.|+.|+.- .-+...++|-+.-....+.++|+.++.+|-. ..++..++...+..+|+.+.
T Consensus 136 vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~------~~rva~Sl~~~~~~~G~~v~ 196 (325)
T 1vlv_A 136 VPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDT------RNNVATSLMIACAKMGMNFV 196 (325)
T ss_dssp SCEEESCCSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCT------TSHHHHHHHHHHHHTTCEEE
T ss_pred CCEEeCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCC------CcCcHHHHHHHHHHCCCEEE
Confidence 56666432 4456666666543222357999999887751 12456777777778888766
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=23.43 E-value=1.8e+02 Score=20.01 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=39.5
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 89 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~ 89 (151)
+.......+..+|++|+.--.-...-...++.+++.+... ...++++.++++=--..............+....++
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 150 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN----ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL 150 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH----CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 3444466688899999875544333334455566665432 234677777776210000001112344445555666
Q ss_pred EEec
Q 031886 90 LFVP 93 (151)
Q Consensus 90 ~~v~ 93 (151)
.++.
T Consensus 151 ~~~~ 154 (223)
T 3cpj_B 151 LFTE 154 (223)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 120
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=23.10 E-value=1.5e+02 Score=19.65 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=39.9
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 89 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~ 89 (151)
+.......+..+|++|+.--.-...-...++.+++.+... .-.++++.++++=--...................++
T Consensus 87 ~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (193)
T 2oil_A 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL 162 (193)
T ss_dssp TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC
Confidence 3334355678899999875443322233445566655431 235677777776211001001123344444555666
Q ss_pred EEec
Q 031886 90 LFVP 93 (151)
Q Consensus 90 ~~v~ 93 (151)
.++.
T Consensus 163 ~~~~ 166 (193)
T 2oil_A 163 LFLE 166 (193)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 121
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=23.05 E-value=1.8e+02 Score=22.06 Aligned_cols=76 Identities=20% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH-----HHHHHHHhh--------hhhh---hccCCCCcEEEEEccCCCCccH
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ-----CKAFFDATY--------ELWA---SQALAGKPAGIFWSTGFHGGGQ 73 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~-----~K~flDrl~--------~~~~---~~~l~gK~~~~f~s~g~~~g~~ 73 (151)
++.++.+...+....|.-+|.|+....++ +-++..++. ..|. ...+.||.++++|. |.. |
T Consensus 79 ~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~-G~I-G-- 154 (313)
T 2ekl_A 79 LDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGF-GRI-G-- 154 (313)
T ss_dssp CTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESC-SHH-H--
T ss_pred CCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEee-CHH-H--
Confidence 34456778888888899999887554332 222222221 1131 24689999999985 222 1
Q ss_pred HHHHHHHHHHHHhcCcEEec
Q 031886 74 ELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 74 ~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+...+..+||.++.
T Consensus 155 ----~~~A~~l~~~G~~V~~ 170 (313)
T 2ekl_A 155 ----TKVGIIANAMGMKVLA 170 (313)
T ss_dssp ----HHHHHHHHHTTCEEEE
T ss_pred ----HHHHHHHHHCCCEEEE
Confidence 3445556677888775
No 122
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=22.92 E-value=1.7e+02 Score=23.29 Aligned_cols=76 Identities=16% Similarity=0.035 Sum_probs=46.5
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh-----hccCCCCcEEEEEccCCCCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA-----SQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~-----~~~l~gK~~~~f~s~g~~~g 71 (151)
++.++++...+....|+-+|.|+..--+++ -.+..++. ..|. ...+.||.++++|. |.. |
T Consensus 80 ~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGl-G~I-G 157 (404)
T 1sc6_A 80 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGY-GHI-G 157 (404)
T ss_dssp CTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECC-SHH-H
T ss_pred cCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeE-CHH-H
Confidence 445667888888899999998875443221 22221111 1232 23689999999986 221 1
Q ss_pred cHHHHHHHHHHHHHhcCcEEec
Q 031886 72 GQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 72 ~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+...+..+||.++.
T Consensus 158 ------~~vA~~l~~~G~~V~~ 173 (404)
T 1sc6_A 158 ------TQLGILAESLGMYVYF 173 (404)
T ss_dssp ------HHHHHHHHHTTCEEEE
T ss_pred ------HHHHHHHHHCCCEEEE
Confidence 3455566678999885
No 123
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=22.91 E-value=1.7e+02 Score=19.31 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=30.7
Q ss_pred CCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 12 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 12 ~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
......+..+|++|+.--.-...-...++.+++.+... ...+++..++++
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~n 129 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGN 129 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 33355678899999976554433334556666666432 234677777776
No 124
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=22.75 E-value=29 Score=24.86 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=28.3
Q ss_pred hhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCC
Q 031886 19 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 70 (151)
Q Consensus 19 ~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 70 (151)
++||.+|+.-++ +-.|...++++... .-+=|.+.++|++...+
T Consensus 73 rqaDiliVeG~V-----t~~m~~~l~~~~e~----~p~pk~VIAvGsCA~~G 115 (181)
T 3i9v_6 73 RQADVMIVAGRL-----SKKMAPVMRRVWEQ----MPDPKWVISMGACASSG 115 (181)
T ss_dssp -CCCCEEEESCC-----BTTTHHHHHHHHHS----SCSSCCEEEEHHHHHSC
T ss_pred CCceEEEEeccC-----CcccHHHHHHHHHH----cCCCceEEEeecccccC
Confidence 578888776544 44556677777542 34568899999986543
No 125
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=22.46 E-value=2.5e+02 Score=21.06 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCEeEEeccccCCcchHHHHHH-----------------------HHHhhhhhhhccCCCCcEEEEEccCCCCcc----H
Q 031886 21 ADGFLFGFPSRFGVMAAQCKAF-----------------------FDATYELWASQALAGKPAGIFWSTGFHGGG----Q 73 (151)
Q Consensus 21 aD~iIlgsPtY~~~~~~~~K~f-----------------------lDrl~~~~~~~~l~gK~~~~f~s~g~~~g~----~ 73 (151)
-|.||+-+|+|.+.....+..- +|.+ ...+..++.+++.+--...|+ .
T Consensus 128 ~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~l~~~~~~v~~~p~np~g~~~~~~ 202 (406)
T 4adb_A 128 KSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSA-----SALIDDSTCAVIVEPIQGEGGVVPAS 202 (406)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHH-----HTTCSTTEEEEEECSEETTTTSEECC
T ss_pred CcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHH-----HHHhcCCeEEEEEeCCcCCCCCccCC
Confidence 3889999999988865443211 1111 124556777777663233333 3
Q ss_pred HHHHHHHHHHHHhcCcEEe
Q 031886 74 ELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 74 ~~~l~~~~~~l~~~g~~~v 92 (151)
...++.+.+.+..++..++
T Consensus 203 ~~~l~~l~~l~~~~~~~li 221 (406)
T 4adb_A 203 NAFLQGLRELCNRHNALLI 221 (406)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 3457888888888888776
No 126
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=22.42 E-value=2.8e+02 Score=21.64 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=33.5
Q ss_pred cccCCc--chHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 29 PSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 29 PtY~~~--~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
|+.|+. -.-+...++|-+.=....+.++|++++++|-. .++...+...+..+|+.+.
T Consensus 149 PVINag~~~~HPtQaLaDl~TI~E~~G~l~glkva~vGD~-------~nva~Sl~~~~~~~G~~v~ 207 (340)
T 4ep1_A 149 PVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDG-------NNVCHSLLLASAKVGMHMT 207 (340)
T ss_dssp CEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC-------CHHHHHHHHHHHHHTCEEE
T ss_pred CEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC-------chhHHHHHHHHHHcCCEEE
Confidence 555432 23355666665432222357999999888742 2355677777777787755
No 127
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=22.15 E-value=2.2e+02 Score=21.73 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHH-----HHHHHHHhh--------hhhh------------hccCCCCcEEEEE
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQ-----CKAFFDATY--------ELWA------------SQALAGKPAGIFW 64 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~-----~K~flDrl~--------~~~~------------~~~l~gK~~~~f~ 64 (151)
++.++.+...+....|.-+|.|+...-+. +-++..++. ..|. ...+.||.++++|
T Consensus 78 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG 157 (334)
T 2dbq_A 78 YDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157 (334)
T ss_dssp CTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEEC
T ss_pred cccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEc
Confidence 34456778888888888899987554332 222222221 1232 1368999999998
Q ss_pred ccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 65 STGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 65 s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
. |.. | ..+...+..+|+.++.
T Consensus 158 ~-G~i-G------~~iA~~l~~~G~~V~~ 178 (334)
T 2dbq_A 158 L-GRI-G------QAIAKRAKGFNMRILY 178 (334)
T ss_dssp C-SHH-H------HHHHHHHHHTTCEEEE
T ss_pred c-CHH-H------HHHHHHHHhCCCEEEE
Confidence 5 222 1 3444455567888774
No 128
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=21.97 E-value=81 Score=20.58 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=29.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
..-+..+|++|+.--.-...-...++.+++.+..........+.+..++++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 126 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN 126 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence 344678899998654433333344566666654321111236778888887
No 129
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=21.86 E-value=1.4e+02 Score=19.97 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=41.5
Q ss_pred CCCChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcE
Q 031886 11 PVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGML 90 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~ 90 (151)
.......+..+|++|+.-..-...-...++.+++.+... ...+.++.++++=--.........+.........++.
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 159 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI 159 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE
Confidence 344466788999999976654433334455566655432 2356777777762111010011223444444555665
Q ss_pred Eec
Q 031886 91 FVP 93 (151)
Q Consensus 91 ~v~ 93 (151)
++.
T Consensus 160 ~~~ 162 (191)
T 2a5j_A 160 FME 162 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 130
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=21.81 E-value=2.2e+02 Score=21.92 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=46.3
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hh---hh---------hccCCCCcEEEEE
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------EL---WA---------SQALAGKPAGIFW 64 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~---~~---------~~~l~gK~~~~f~ 64 (151)
++.++++...+....|.-+|.|+....+++ -++..++. .. |. ...+.||.++++|
T Consensus 91 ~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG 170 (348)
T 2w2k_A 91 FDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVG 170 (348)
T ss_dssp CTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEEC
T ss_pred ccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEE
Confidence 455667888888899999999875543332 22222211 11 41 2468999999998
Q ss_pred ccCCCCccHHHHHHHHHHHHH-hcCcEEec
Q 031886 65 STGFHGGGQELTALTAVTQLA-HHGMLFVP 93 (151)
Q Consensus 65 s~g~~~g~~~~~l~~~~~~l~-~~g~~~v~ 93 (151)
. |.. | ..+...+. .+||.++.
T Consensus 171 ~-G~I-G------~~vA~~l~~~~G~~V~~ 192 (348)
T 2w2k_A 171 L-GAI-Q------KEIARKAVHGLGMKLVY 192 (348)
T ss_dssp C-SHH-H------HHHHHHHHHTTCCEEEE
T ss_pred E-CHH-H------HHHHHHHHHhcCCEEEE
Confidence 5 222 1 34455566 78888774
No 131
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=21.80 E-value=1.5e+02 Score=20.64 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=28.3
Q ss_pred ccccccccceecCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 031886 109 KGGSSYGAGTFAADG-SRQPTDLELQQAFHQGKYVAEIAK 147 (151)
Q Consensus 109 ~~~~~~g~~~~~~~~-~~~p~e~~l~~a~~lG~~la~~~~ 147 (151)
..|..+|+-...++. ...++++|++.++.++..+|..+.
T Consensus 107 ~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aie 146 (160)
T 3cit_A 107 ADEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLE 146 (160)
T ss_dssp SSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 446667776665422 236999999999999998886543
No 132
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=21.59 E-value=1.8e+02 Score=19.01 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=38.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
...+..+|++|+.-..-...-...++.+++.+... ...+.+..++++=--.........+.........++.++.
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 149 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEE
Confidence 44577899999976654432234455566655431 2356777777763111111111223444455555666554
No 133
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=21.54 E-value=1.3e+02 Score=20.15 Aligned_cols=74 Identities=8% Similarity=0.020 Sum_probs=38.2
Q ss_pred HHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEec
Q 031886 16 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 16 ~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+..+|++|+..-.-...-...++.++..+... ...++++.++++=--...................++.++.
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFE 149 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEE
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEE
Confidence 3467899999876654433334455666665432 3457788777763111111111123344444455666554
No 134
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.51 E-value=2.3e+02 Score=20.23 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhhhh--ccCCCCcEEEEEc-cCCCCccHHHHHHHHHHHHHhcCcEEecCCCCC
Q 031886 37 AQCKAFFDATYELWAS--QALAGKPAGIFWS-TGFHGGGQELTALTAVTQLAHHGMLFVPLGYTF 98 (151)
Q Consensus 37 ~~~K~flDrl~~~~~~--~~l~gK~~~~f~s-~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~~ 98 (151)
..|+.-++.+...... ..-..+.-.++++ -|-. .+.....+...|..+|+.++..|..+
T Consensus 69 ~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~---HdiG~~iv~~~l~~~G~~Vi~LG~~v 130 (215)
T 3ezx_A 69 KAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDI---HDIGHRLVTTMLGANGFQIVDLGVDV 130 (215)
T ss_dssp HHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCC---CCHHHHHHHHHHHHTSCEEEECCSSC
T ss_pred HHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCCh---hHHHHHHHHHHHHHCCCeEEEcCCCC
Confidence 4556666665443322 1122333344444 3333 33445677778889999999776543
No 135
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Probab=21.30 E-value=2e+02 Score=20.63 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=24.8
Q ss_pred CCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEecCCCCC
Q 031886 57 GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTF 98 (151)
Q Consensus 57 gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v~~g~~~ 98 (151)
.+++.+|.-+|++..+.......+...+...|+.++...|+.
T Consensus 81 ~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~ 122 (303)
T 4e15_A 81 QAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNL 122 (303)
T ss_dssp TCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCC
Confidence 467777776544333332223345566677899988766653
No 136
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=21.23 E-value=3e+02 Score=21.55 Aligned_cols=58 Identities=10% Similarity=-0.058 Sum_probs=33.7
Q ss_pred ccccCC--cchHHHHHHHHHhhhhhhhcc-------------CCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 28 FPSRFG--VMAAQCKAFFDATYELWASQA-------------LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 28 sPtY~~--~~~~~~K~flDrl~~~~~~~~-------------l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.|+.|+ +-.-+...++|-+.=..+.+. ++|+.++++|-. .++..++...+..+|+.+.
T Consensus 144 vPVINag~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~-------~nva~Sl~~~l~~lG~~v~ 216 (353)
T 3sds_A 144 VPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDA-------NNVLFDLAIAATKMGVNVA 216 (353)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCC-------CHHHHHHHHHHHHTTCEEE
T ss_pred CCEEECCCCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCC-------chHHHHHHHHHHHcCCEEE
Confidence 466654 234456666665432111123 489998877742 1356777777778888755
No 137
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=20.99 E-value=49 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=22.3
Q ss_pred CCCChHHHhhCCEeEEeccccCCcchHHH
Q 031886 11 PVIRPHQLKEADGFLFGFPSRFGVMAAQC 39 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~~~~~~~~ 39 (151)
+++ ++.|.+||.||+|--..+-++-+.+
T Consensus 170 p~~-l~AI~~AD~IvlgPGS~~TSI~P~L 197 (323)
T 2o2z_A 170 REG-LEAIRKADVIVIGPGSLYTSVLPNL 197 (323)
T ss_dssp HHH-HHHHHHCSEEEECSSCTTTTHHHHH
T ss_pred HHH-HHHHHhCCEEEECCCCCHHHhcccc
Confidence 344 8889999999999888887775543
No 138
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=20.80 E-value=3e+02 Score=21.41 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=34.6
Q ss_pred ccccCCc--chHHHHHHHHHhhhhhhh--c-cCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 28 FPSRFGV--MAAQCKAFFDATYELWAS--Q-ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 28 sPtY~~~--~~~~~K~flDrl~~~~~~--~-~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
.|+.|+. -.-+...+.|-+.=.... + .++|+.++++|-. .++..++...+..+|+.+.
T Consensus 141 vPVINag~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~-------~rva~Sl~~~~~~~G~~v~ 203 (339)
T 4a8t_A 141 IPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA-------TQVCFSLGLITTKMGMNFV 203 (339)
T ss_dssp SCEEECCCSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSC-------CHHHHHHHHHHHHTTCEEE
T ss_pred CCEEECCCCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC-------chhHHHHHHHHHHcCCEEE
Confidence 3566543 233566666654322222 3 6888998877742 2456777777777888765
No 139
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=20.71 E-value=90 Score=24.03 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=46.4
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh-------hccCCCCcEEEEEccCCC
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA-------SQALAGKPAGIFWSTGFH 69 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~-------~~~l~gK~~~~f~s~g~~ 69 (151)
++.++.+...+....|.-+|.|+...-+++ -++..++. ..|. ...+.||.++++|. |..
T Consensus 78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~-G~I 156 (330)
T 4e5n_A 78 FDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGM-GAI 156 (330)
T ss_dssp CTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECC-SHH
T ss_pred ccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEee-CHH
Confidence 455667888888888888998876543332 12221111 1121 13578999999986 221
Q ss_pred CccHHHHHHHHHHHHHhcCcEEecC
Q 031886 70 GGGQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 70 ~g~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
| ..+...+..+||.++..
T Consensus 157 -G------~~vA~~l~~~G~~V~~~ 174 (330)
T 4e5n_A 157 -G------LAMADRLQGWGATLQYH 174 (330)
T ss_dssp -H------HHHHHHTTTSCCEEEEE
T ss_pred -H------HHHHHHHHHCCCEEEEE
Confidence 1 34555667788888753
No 140
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=20.65 E-value=2.5e+02 Score=20.81 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=36.5
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHH---HHhhhhhhhccCCCCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEE
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFF---DATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLF 91 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~fl---Drl~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~ 91 (151)
.+.+.+||.||+..|+. ..++..+ +.+.. ....|+.+ ...++. ...+...+...+...|..+
T Consensus 72 ~~~~~~aDvvi~~vp~~-----~~~~~v~~~~~~l~~----~l~~g~~v---v~~st~---~~~~~~~~~~~~~~~g~~~ 136 (310)
T 3doj_A 72 AEVIKKCKYTIAMLSDP-----CAALSVVFDKGGVLE----QICEGKGY---IDMSTV---DAETSLKINEAITGKGGRF 136 (310)
T ss_dssp HHHHHHCSEEEECCSSH-----HHHHHHHHSTTCGGG----GCCTTCEE---EECSCC---CHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhCCEEEEEcCCH-----HHHHHHHhCchhhhh----ccCCCCEE---EECCCC---CHHHHHHHHHHHHHcCCEE
Confidence 34467899999999863 3455555 33332 12244433 222121 1223456666667778888
Q ss_pred ecCC
Q 031886 92 VPLG 95 (151)
Q Consensus 92 v~~g 95 (151)
++.+
T Consensus 137 v~~p 140 (310)
T 3doj_A 137 VEGP 140 (310)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8644
No 141
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=20.64 E-value=1.6e+02 Score=22.24 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCCChHHHhhCCEeEEeccccCCcchHHH-----HHHHHHhh--------hhhh-----hccCCCCcEEEEEccCCCCcc
Q 031886 11 PVIRPHQLKEADGFLFGFPSRFGVMAAQC-----KAFFDATY--------ELWA-----SQALAGKPAGIFWSTGFHGGG 72 (151)
Q Consensus 11 ~~~~~~~l~~aD~iIlgsPtY~~~~~~~~-----K~flDrl~--------~~~~-----~~~l~gK~~~~f~s~g~~~g~ 72 (151)
+.++.+...+....|.-+|.|+...-+++ -++..++. ..|. ...+.||.++++|. |.. |
T Consensus 78 d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~-G~I-G- 154 (307)
T 1wwk_A 78 DNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGF-GRI-G- 154 (307)
T ss_dssp TTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECC-SHH-H-
T ss_pred cccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEcc-CHH-H-
Confidence 34567778888888999998875543322 22211111 1232 13689999999985 222 1
Q ss_pred HHHHHHHHHHHHHhcCcEEec
Q 031886 73 QELTALTAVTQLAHHGMLFVP 93 (151)
Q Consensus 73 ~~~~l~~~~~~l~~~g~~~v~ 93 (151)
..+...+..+||.++.
T Consensus 155 -----~~~A~~l~~~G~~V~~ 170 (307)
T 1wwk_A 155 -----YQVAKIANALGMNILL 170 (307)
T ss_dssp -----HHHHHHHHHTTCEEEE
T ss_pred -----HHHHHHHHHCCCEEEE
Confidence 3445555677888774
No 142
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=20.57 E-value=1.7e+02 Score=21.96 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=21.0
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhh
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 48 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~ 48 (151)
.+++..+|.||++.|.+. +...++.+..
T Consensus 81 ~~~~~~~D~vilavk~~~------~~~~l~~l~~ 108 (318)
T 3hwr_A 81 PSAVQGADLVLFCVKSTD------TQSAALAMKP 108 (318)
T ss_dssp GGGGTTCSEEEECCCGGG------HHHHHHHHTT
T ss_pred HHHcCCCCEEEEEccccc------HHHHHHHHHH
Confidence 456788999999999973 4666666653
No 143
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=20.51 E-value=2.9e+02 Score=21.12 Aligned_cols=49 Identities=6% Similarity=-0.168 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhhhccCC-CCcEEEEEccCCCCccHHHHHHHHHHHHHhcCcEEe
Q 031886 37 AQCKAFFDATYELWASQALA-GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 92 (151)
Q Consensus 37 ~~~K~flDrl~~~~~~~~l~-gK~~~~f~s~g~~~g~~~~~l~~~~~~l~~~g~~~v 92 (151)
-+...+.|-+.=..+.+.++ |++++++|-. .++..++...+..+|+.+.
T Consensus 125 HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~-------~~va~Sl~~~~~~~G~~v~ 174 (307)
T 3tpf_A 125 HPTQVLGDLFTIKEWNKMQNGIAKVAFIGDS-------NNMCNSWLITAAILGFEIS 174 (307)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGCCEEEEESCS-------SHHHHHHHHHHHHHTCEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCEEEEEcCC-------CccHHHHHHHHHHcCCEEE
Confidence 35566666543222235688 9999887751 1356677777777787755
No 144
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=20.46 E-value=94 Score=20.95 Aligned_cols=53 Identities=9% Similarity=-0.025 Sum_probs=29.7
Q ss_pred CChHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 13 IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 13 ~~~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
....-+..+|++|+.-..-...-...++.+++.+..........+++..++++
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 33456788999998765433332334455555554321111235678877776
No 145
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=20.38 E-value=1.9e+02 Score=23.19 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCCCChHHHhhCCEeEEeccccCCcchHHHH-----HHHHHhh--------hhhh-----hccCCCCcEEEEEccCCCCc
Q 031886 10 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCK-----AFFDATY--------ELWA-----SQALAGKPAGIFWSTGFHGG 71 (151)
Q Consensus 10 ~~~~~~~~l~~aD~iIlgsPtY~~~~~~~~K-----~flDrl~--------~~~~-----~~~l~gK~~~~f~s~g~~~g 71 (151)
++.++++...+....|+-+|-|+..--+++- .+..++. ..|. ...+.||.++++|. |.. |
T Consensus 91 ~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGl-G~I-G 168 (416)
T 3k5p_A 91 TNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGY-GNI-G 168 (416)
T ss_dssp CTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECC-SHH-H
T ss_pred cCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEee-CHH-H
Confidence 4556688888899999999988765433321 1111111 1122 23689999999986 222 1
Q ss_pred cHHHHHHHHHHHHHhcCcEEecC
Q 031886 72 GQELTALTAVTQLAHHGMLFVPL 94 (151)
Q Consensus 72 ~~~~~l~~~~~~l~~~g~~~v~~ 94 (151)
..+...+..+||.++..
T Consensus 169 ------~~vA~~l~~~G~~V~~y 185 (416)
T 3k5p_A 169 ------SQVGNLAESLGMTVRYY 185 (416)
T ss_dssp ------HHHHHHHHHTTCEEEEE
T ss_pred ------HHHHHHHHHCCCEEEEE
Confidence 34455667789998853
No 146
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=20.33 E-value=1.2e+02 Score=20.45 Aligned_cols=47 Identities=6% Similarity=0.007 Sum_probs=28.8
Q ss_pred hHHHhhCCEeEEeccccCCcchHHHHHHHHHhhhhhhhccCCCCcEEEEEc
Q 031886 15 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 65 (151)
Q Consensus 15 ~~~l~~aD~iIlgsPtY~~~~~~~~K~flDrl~~~~~~~~l~gK~~~~f~s 65 (151)
...+..+|++|+.--.-...-...++.+++.+... ...++++.++++
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilV~N 139 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGN 139 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 34567899999976654433334445555555432 345678877776
No 147
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=20.33 E-value=56 Score=23.82 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=22.6
Q ss_pred hHHHh--hCCEeEEeccccCC-cchHHHHHHHHHh
Q 031886 15 PHQLK--EADGFLFGFPSRFG-VMAAQCKAFFDAT 46 (151)
Q Consensus 15 ~~~l~--~aD~iIlgsPtY~~-~~~~~~K~flDrl 46 (151)
++++. -+|.||+|+|.|.. ++...++.+.+.+
T Consensus 200 p~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i 234 (239)
T 1dbt_A 200 PAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEW 234 (239)
T ss_dssp HHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHH
Confidence 45543 38999999999975 6666666665554
No 148
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=20.00 E-value=1.2e+02 Score=22.08 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=23.4
Q ss_pred hHHHhh--CCEeEEeccccCC-cchHHHHHHHHHhh
Q 031886 15 PHQLKE--ADGFLFGFPSRFG-VMAAQCKAFFDATY 47 (151)
Q Consensus 15 ~~~l~~--aD~iIlgsPtY~~-~~~~~~K~flDrl~ 47 (151)
+.++.+ ||.+|.||+.+.. ++...++.+.+.+.
T Consensus 183 ~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~ 218 (228)
T 3ovp_A 183 VHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS 218 (228)
T ss_dssp HHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 556655 9999999999864 46666666666554
Done!