BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031888
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 11 NLPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVH-SYVKESI 67
++PA K ++ + + +I KI P+ + AE ++GDG PG+++ G H YVK I
Sbjct: 13 DIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFGEGSHYGYVKHKI 72
Query: 68 EKIEGVETGRSVTYLVVDGE 87
I+ V + +Y +++G+
Sbjct: 73 HSIDKVN--HTYSYSLIEGD 90
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 1 MKKMKGQVVLNLPAEKAWEMYRNN--EIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPA 58
+K+ Q LN+ E W + ++ K+ P ++ + I+GDG G+ +F P
Sbjct: 2 IKEFNTQTTLNVGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPG 61
Query: 59 VH--SYVKESIEKIEGVETGRSVTYLVVDGE-LKGMYDPYRVTFSFTPVEGKQDEMCIAE 115
+ +Y +E I + + E ++ VV+G L Y+ TF F+ + + + +
Sbjct: 62 IAPVNYQREVITEYD--ELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNVKI 119
Query: 116 WAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQLS 150
L P K ++ L +L +KF L+
Sbjct: 120 SYDHESELIEEKVKPTKTSESTLFYLGQLEKFLLN 154
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 16 KAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGP-AVHSYVKESIEKIEGVE 74
KA+ + +N ++ KI P+ + H+E ++GDG PG+++ G + + YVK I+ I+ +
Sbjct: 20 KAFVLDADN-LVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSID--K 76
Query: 75 TGRSVTYLVVDGELKG 90
S +Y +++G+ G
Sbjct: 77 ENYSYSYTLIEGDALG 92
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 1 MKKMKGQVVLNLPAEKAWEMYRNN--EIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPA 58
+K+ Q L++ E W + + ++ K+ P ++ + I+GDG G++ +F P
Sbjct: 2 VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61
Query: 59 VH-SYVKESIEKIEGVETGRSVTYLVVD-GELKGMYDPYRVTFSFTPVEGKQDEMCIAEW 116
V SY +E I + + E+ + V++ G L Y+ TF + +E + + +
Sbjct: 62 VSPSYQREEITEFD--ESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIE-EDKTLVNVKI 118
Query: 117 AAEFEPLTTSTPAPEKARDAALGFLKCFDKF 147
+ + + P K + L +L+ +++
Sbjct: 119 SYDHDSDIEEKVTPTKTSQSTLMYLRRLERY 149
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 16 KAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGP-AVHSYVKESIEKIEGVE 74
KA+ + +N ++ KI P+ + H+E + GDG PG+++ G + + YVK I+ I+ +
Sbjct: 20 KAFVLDADN-LVPKIAPQAIKHSEILWGDGGPGTIKKITFGEGSQYGYVKHKIDSID--K 76
Query: 75 TGRSVTYLVVDGELKG 90
S +Y +++G+ G
Sbjct: 77 ENYSYSYTLIEGDALG 92
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 3 KMKGQVVLNLPAEKAWEMYRNN-EIISKINPEMLAHAEYIQGD-GSPGSLRLFKLGPAVH 60
K++ V + A+K M+ +SK +P + + +GD G+ GS+ + VH
Sbjct: 18 KLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY---VH 74
Query: 61 S-YVKESIEKIEGVETGRS-VTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAA 118
K + E+IE VE ++ +T+ V++G+L Y + +T TP G I W
Sbjct: 75 DGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPG--SIVHWHL 132
Query: 119 EFEPLTTSTPAPEKARDAALGFLKCFDKFQLS 150
E+E ++ PE + K D+ L+
Sbjct: 133 EYEKISEEVAHPETLLQFCVEVSKEIDEHLLA 164
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + ++++ K+ P+ ++ E I+G+G PG+++ YVK+ ++
Sbjct: 13 IPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + ++ K+ P+ ++ E I+G+G PG+++ YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + + K+ P+ ++ E I+G+G PG+++ + YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGLPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V
1 Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1
Isoform J In Complex With
8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + + K+ P+ ++ E I+G+G PG+++ YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T +Y V++G
Sbjct: 73 EVD--HTNFKYSYSVIEG 88
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With 8-Anilinonaphthalene-1-Sulfonate
(Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Ternary Complex With
8-Anilinonaphthalene-1-Sulfonate ( Ans) And Deoxycholic
Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Dimethylbenzylammonium Propane
Sulfonate
Length = 159
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + + K+ P+ ++ E I+G+G PG+++ YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + + K+ P+ ++ E I+G+G PG+++ YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + + K+ P+ ++ E I G+G PG+++ + YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPEGLPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|2LE1|A Chain A, Solution Nmr Structure Of Tfu_2981 From Thermobifida
Fusca, Northeast Structural Genomics Consortium Target
Tfr85a
Length = 151
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 15/135 (11%)
Query: 1 MKKMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVH 60
M ++ V + PA W + + I + +P++ A +PG+ R+F G
Sbjct: 1 MATLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAG---- 56
Query: 61 SYVKESIEKIEGVETGRSVTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEF 120
+ + +E E+ R + Y + D +R P + D C W A F
Sbjct: 57 TEEELVERLVERDESARRLVYTMPDPPFP--ITNHRAVLEVVP---RDDRHCTVVWTAMF 111
Query: 121 EPLTTSTPAPEKARD 135
+ +PE AR+
Sbjct: 112 D------CSPETARE 120
>pdb|4GRH|A Chain A, Crystal Structure Of Pabb Of Stenotrophomonas Maltophilia
Length = 457
Score = 30.8 bits (68), Expect = 0.34, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 11 NLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKES 66
+LP W + + E+ S+I P + A A +GDG P +L L +H + E+
Sbjct: 97 SLPFRGGWALMLDYEVASQIEPVLPARA---RGDGRPTALALRCPAAVLHDHHNEA 149
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 12 LPAEKAWEMY--RNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIE 68
+PA + ++ + + + ++ P+ ++ E I G+G PG+++ + YVK+ ++
Sbjct: 13 IPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPEGLPFKYVKDRVD 72
Query: 69 KIEGVETGRSVTYLVVDG 86
+++ T Y V++G
Sbjct: 73 EVD--HTNFKYNYSVIEG 88
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 7 QVVLNLPAEKAWE--MYRNNEIISKINPEMLAHAEYIQGDGSPGSLR 51
+ V +L AEK + + N I K P + AE ++GDG PG+++
Sbjct: 14 EYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIK 60
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 41 IQGDGSPGSLRLFKL---GPAVHSYVKESIEKIEGVET-GRSVTYLVVDGEL 88
I+GDG PG+L++ L GP + +I+GV + Y V+DG++
Sbjct: 44 IKGDGGPGTLKIITLPDGGP-----ITTMTLRIDGVNKEALTFDYSVIDGDI 90
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 77 RSVTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDA 136
RS+TYLV+D E M D F P Q + + + + + TS P+ R
Sbjct: 166 RSITYLVID-EADKMLD-----MEFEP----QIRKILLDVRPDRQTVMTSATWPDTVRQL 215
Query: 137 ALGFLK 142
AL +LK
Sbjct: 216 ALSYLK 221
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 23 NNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVH-SYVKESIEKIEGVETGRSVTY 81
+++II K+ E + E ++G+G PG+++ H SYV I+ I+ E Y
Sbjct: 26 SDDIIPKV-IEQIQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAID--EASFEYNY 82
Query: 82 LVVDGELKGMYDPY-RVTFSFTPVEGKQDEMCIAEWAAEFEPL--TTSTPAPEKARDAAL 138
+V G G+ + ++TF + G D I + +F S E+A+
Sbjct: 83 SIVGG--TGLDESLEKITFESKLLSG-PDGGSIGKIKVKFHTKGDVLSDAVREEAKARGT 139
Query: 139 GFLKCFDKFQLS 150
G K + + L+
Sbjct: 140 GLFKAVEGYVLA 151
>pdb|2REG|A Chain A, Abc-transporter Choline Binding Protein In Complex With
Choline
pdb|2REG|B Chain B, Abc-transporter Choline Binding Protein In Complex With
Choline
pdb|2REJ|A Chain A, Abc-Transporter Choline Binding Protein In Unliganded
Semi- Closed Conformation
pdb|2REJ|B Chain B, Abc-Transporter Choline Binding Protein In Unliganded
Semi- Closed Conformation
pdb|2RF1|A Chain A, Crystal Structure Of Chox In An Unliganded Closed
Conformation
pdb|2RF1|B Chain B, Crystal Structure Of Chox In An Unliganded Closed
Conformation
pdb|2RIN|A Chain A, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine
pdb|2RIN|B Chain B, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine
pdb|3HCQ|A Chain A, Structural Analysis Of The Choline Binding Protein Chox In
A Semi- Closed And Ligand-Free Conformation
pdb|3HCQ|B Chain B, Structural Analysis Of The Choline Binding Protein Chox In
A Semi- Closed And Ligand-Free Conformation
Length = 298
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 21 YRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVT 80
YR ++ + + E LA A+Y + G+ K + ++ E KI G+E G
Sbjct: 74 YREDKSVETVR-ENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGN 132
Query: 81 YLVVDGELKGMYD 93
L++D KG +D
Sbjct: 133 RLIIDMVEKGTFD 145
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 32 PEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVVDGELKG- 90
PE + HA +G G+ G +FK+ ++ Y K G ET + V GEL
Sbjct: 49 PERVVHA---KGAGAHG---IFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSS 102
Query: 91 --MYDPYRVTFSFTPVEGKQD 109
+ DP F EG D
Sbjct: 103 DTLRDPRGFALKFYTDEGNYD 123
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 13 PAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHS-YVKESIEKIE 71
PA+ + + +II E + E ++G+G PG+++ S YV IE I+
Sbjct: 16 PAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAID 75
Query: 72 GVETGRSVTYLVVDGELKGMYDPY-RVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAP 130
E Y +V G G+ D +++F VEG + I + + E + P
Sbjct: 76 --EANLGYNYSIVGG--VGLPDTIEKISFETKLVEG-ANGGSIGKVTIKIETKGDAQPNE 130
Query: 131 EKARDAAL---GFLKCFDKF 147
E+ + A F K + +
Sbjct: 131 EEGKAAKARGDAFFKAIESY 150
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 5 KGQVVLNLPAEKAWEMYRNNEI 26
+G V+L PA +W+ Y+N E+
Sbjct: 415 QGDVILLSPANASWDXYKNFEV 436
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 23 NNEIISKINPEMLAHAEYIQGDGSPGSL-RLFKLGPAVHSYVKESIEKIEGVETGRSVTY 81
++EI+ K+ E + E ++G+G PG++ ++ + S+V ++ I+ E + Y
Sbjct: 26 SDEIVPKV-IEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAID--EANLTYNY 82
Query: 82 LVVDGELKGMYDPY-RVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAA--- 137
++ GE G+ + ++++ + G D I + +F T E RD A
Sbjct: 83 SIIGGE--GLDESLEKISYESKILPG-PDGGSIGKINVKFH--TKGDVLSETVRDQAKFK 137
Query: 138 -LGFLKCFDKFQLSY 151
LG K + + L++
Sbjct: 138 GLGLFKAIEGYVLAH 152
>pdb|3IZB|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 225
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 103 PVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKF 147
PVE ++D E EF P+ +TP PE+ + A +K F+K+
Sbjct: 7 PVEVQED----FEVVEEFTPVVLATPIPEEVQQAQTE-IKLFNKW 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,983,960
Number of Sequences: 62578
Number of extensions: 208429
Number of successful extensions: 620
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 31
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)