Query 031888
Match_columns 151
No_of_seqs 107 out of 930
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 2.4E-38 5.1E-43 233.1 16.8 143 3-150 5-150 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 5.8E-35 1.3E-39 214.0 20.2 143 2-150 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 6.4E-18 1.4E-22 119.5 17.3 134 3-148 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 4.7E-15 1E-19 104.7 18.3 107 1-122 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 6.8E-15 1.5E-19 105.5 15.9 136 4-148 1-142 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.6 4.3E-14 9.3E-19 99.6 15.7 108 4-123 1-109 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 4.1E-13 8.9E-18 95.1 17.7 110 3-125 3-115 (140)
8 cd07813 COQ10p_like Coenzyme Q 99.6 1.2E-13 2.7E-18 98.7 12.6 133 5-149 2-136 (138)
9 cd08861 OtcD1_ARO-CYC_like N-t 99.5 1.3E-12 2.7E-17 93.5 16.6 112 4-125 1-113 (142)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 3.2E-12 6.8E-17 90.5 15.7 107 3-123 2-108 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.5 1.1E-11 2.3E-16 87.5 16.6 135 4-148 2-140 (141)
12 cd07825 SRPBCC_7 Ligand-bindin 99.4 8.3E-12 1.8E-16 89.4 15.2 138 3-148 1-143 (144)
13 cd07812 SRPBCC START/RHO_alpha 99.4 1.7E-11 3.8E-16 84.2 15.6 112 5-126 2-114 (141)
14 cd07820 SRPBCC_3 Ligand-bindin 99.4 7.5E-12 1.6E-16 89.7 13.6 110 4-124 1-113 (137)
15 cd07817 SRPBCC_8 Ligand-bindin 99.4 2.4E-11 5.1E-16 86.0 14.6 107 4-125 2-108 (139)
16 cd07824 SRPBCC_6 Ligand-bindin 99.4 5.5E-11 1.2E-15 86.1 15.8 109 4-125 3-114 (146)
17 cd07818 SRPBCC_1 Ligand-bindin 99.4 9E-11 2E-15 84.6 16.3 113 3-125 3-119 (150)
18 PRK10724 hypothetical protein; 99.4 1.8E-11 3.8E-16 90.8 12.5 134 1-146 14-149 (158)
19 cd07814 SRPBCC_CalC_Aha1-like 99.4 6.6E-11 1.4E-15 83.6 14.4 135 4-148 2-137 (139)
20 cd05018 CoxG Carbon monoxide d 99.3 6.5E-11 1.4E-15 84.1 14.2 115 3-126 2-116 (144)
21 PF03364 Polyketide_cyc: Polyk 99.3 2.7E-10 5.9E-15 80.2 13.7 104 10-123 1-104 (130)
22 cd08860 TcmN_ARO-CYC_like N-te 99.3 7.6E-10 1.7E-14 80.9 15.8 113 2-126 1-116 (146)
23 cd07823 SRPBCC_5 Ligand-bindin 99.1 4.7E-09 1E-13 75.9 12.3 136 5-148 2-144 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.9 4.4E-08 9.5E-13 69.8 11.6 135 3-149 2-144 (145)
25 cd08893 SRPBCC_CalC_Aha1-like_ 98.8 1.9E-07 4.2E-12 65.6 13.5 133 3-149 1-135 (136)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 1.1E-07 2.3E-12 69.9 12.5 125 3-149 12-136 (157)
27 cd08900 SRPBCC_CalC_Aha1-like_ 98.8 1.1E-06 2.4E-11 63.2 16.4 139 4-149 2-142 (143)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.8 2.6E-07 5.6E-12 66.7 13.0 139 4-150 2-142 (142)
29 COG3427 Carbon monoxide dehydr 98.8 2E-07 4.3E-12 68.0 12.0 137 3-149 2-144 (146)
30 cd08894 SRPBCC_CalC_Aha1-like_ 98.8 1.9E-07 4E-12 67.0 11.9 134 4-149 2-138 (139)
31 cd08897 SRPBCC_CalC_Aha1-like_ 98.8 5.4E-07 1.2E-11 64.1 14.1 129 3-150 1-133 (133)
32 COG5637 Predicted integral mem 98.8 1.9E-07 4E-12 70.2 11.1 109 3-126 71-180 (217)
33 cd08896 SRPBCC_CalC_Aha1-like_ 98.7 3.6E-07 7.9E-12 66.0 12.2 141 4-150 2-146 (146)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.7 2.2E-06 4.8E-11 61.9 16.0 136 3-149 1-145 (146)
35 PF06240 COXG: Carbon monoxide 98.7 4.4E-07 9.5E-12 65.5 12.0 133 7-148 2-139 (140)
36 cd08876 START_1 Uncharacterize 98.6 5.8E-06 1.2E-10 62.3 16.3 140 3-148 42-194 (195)
37 COG2867 Oligoketide cyclase/li 98.5 6.9E-07 1.5E-11 65.0 8.8 115 1-126 1-115 (146)
38 cd08891 SRPBCC_CalC Ligand-bin 98.4 1.5E-05 3.3E-10 57.6 13.3 132 4-149 2-148 (149)
39 cd08901 SRPBCC_CalC_Aha1-like_ 98.3 1.5E-05 3.3E-10 56.9 11.0 124 4-149 2-131 (136)
40 cd08892 SRPBCC_Aha1 Putative h 98.3 8.3E-05 1.8E-09 52.5 14.1 122 4-148 2-124 (126)
41 PF08327 AHSA1: Activator of H 98.2 0.00011 2.3E-09 50.8 12.5 122 11-148 1-123 (124)
42 COG3832 Uncharacterized conser 98.1 0.00018 4E-09 52.5 13.3 135 3-149 9-148 (149)
43 COG4276 Uncharacterized conser 97.8 0.0013 2.7E-08 47.5 12.2 116 1-126 1-121 (153)
44 PTZ00220 Activator of HSP-90 A 97.8 0.00085 1.8E-08 47.9 11.5 120 10-148 1-126 (132)
45 cd08874 START_STARD9-like C-te 97.6 0.012 2.7E-07 45.3 16.5 120 4-129 47-182 (205)
46 cd08873 START_STARD14_15-like 97.5 0.023 5E-07 44.8 17.3 142 3-150 78-234 (235)
47 cd08863 SRPBCC_DUF1857 DUF1857 97.3 0.035 7.5E-07 40.5 14.5 110 13-143 18-130 (141)
48 cd08905 START_STARD1-like Chol 97.0 0.049 1.1E-06 41.9 13.9 144 4-150 51-208 (209)
49 PF08982 DUF1857: Domain of un 97.0 0.032 6.9E-07 41.0 12.0 69 4-81 2-79 (149)
50 cd00177 START Lipid-binding ST 96.9 0.093 2E-06 38.5 15.9 120 3-126 40-168 (193)
51 cd08913 START_STARD14-like Lip 96.7 0.19 4.2E-06 39.7 15.4 116 3-123 82-210 (240)
52 cd08906 START_STARD3-like Chol 96.6 0.23 5E-06 38.2 15.4 141 4-149 51-207 (209)
53 cd08871 START_STARD10-like Lip 96.5 0.25 5.4E-06 38.0 15.1 143 4-151 49-203 (222)
54 cd08877 START_2 Uncharacterize 96.4 0.23 5E-06 38.0 13.8 141 3-148 47-212 (215)
55 cd08914 START_STARD15-like Lip 96.4 0.35 7.6E-06 38.2 15.6 139 3-149 79-234 (236)
56 cd08868 START_STARD1_3_like Ch 96.2 0.4 8.7E-06 36.5 17.0 145 4-150 50-207 (208)
57 cd08903 START_STARD5-like Lipi 95.9 0.58 1.3E-05 35.9 15.1 139 4-148 48-205 (208)
58 cd08870 START_STARD2_7-like Li 95.6 0.73 1.6E-05 35.2 16.9 144 3-151 51-209 (209)
59 cd08911 START_STARD7-like Lipi 95.4 0.87 1.9E-05 34.8 14.6 147 4-151 47-207 (207)
60 cd08869 START_RhoGAP C-termina 95.4 0.85 1.8E-05 34.6 14.2 116 4-126 46-171 (197)
61 KOG3177 Oligoketide cyclase/li 94.2 0.23 4.9E-06 38.5 6.7 108 7-125 73-183 (227)
62 cd08910 START_STARD2-like Lipi 92.9 3.3 7.2E-05 31.7 13.9 143 3-151 50-207 (207)
63 PF10698 DUF2505: Protein of u 92.7 3 6.5E-05 30.5 13.6 113 4-126 1-131 (159)
64 cd08872 START_STARD11-like Cer 92.6 4.1 8.9E-05 31.9 13.6 141 3-150 53-226 (235)
65 smart00234 START in StAR and p 92.6 3.4 7.3E-05 30.9 17.0 120 3-126 46-176 (206)
66 cd08902 START_STARD4-like Lipi 89.9 7.6 0.00017 30.0 15.1 121 4-126 49-177 (202)
67 cd08867 START_STARD4_5_6-like 88.9 8.3 0.00018 29.1 15.3 142 4-148 48-205 (206)
68 cd08908 START_STARD12-like C-t 87.6 11 0.00024 29.0 12.5 116 3-126 53-178 (204)
69 PF11687 DUF3284: Domain of un 87.3 8 0.00017 27.0 11.3 102 5-125 2-105 (120)
70 PF01852 START: START domain; 74.8 31 0.00068 25.4 16.8 118 3-126 47-176 (206)
71 KOG2936 Uncharacterized conser 70.9 33 0.00072 28.1 7.9 95 4-119 175-271 (301)
72 cd08904 START_STARD6-like Lipi 49.7 1.2E+02 0.0025 23.3 15.6 120 4-126 48-179 (204)
73 cd08885 RHO_alpha_C_1 C-termin 28.6 2.3E+02 0.005 20.5 7.2 45 75-122 80-124 (190)
74 PF10313 DUF2415: Uncharacteri 28.5 50 0.0011 19.0 1.8 12 48-59 1-12 (43)
75 COG5435 Uncharacterized conser 24.4 2.9E+02 0.0063 20.3 5.6 64 80-147 3-68 (147)
76 PLN00188 enhanced disease resi 21.9 6.5E+02 0.014 23.4 14.0 141 4-146 229-385 (719)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=2.4e-38 Score=233.06 Aligned_cols=143 Identities=29% Similarity=0.641 Sum_probs=132.3
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcc-cccCccccceEEEEcCCCCCC-eEEEEEecCCCcceeeeEEEEEEEE-eCccEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEII-SKINPEMLAHAEYIQGDGSPG-SLRLFKLGPAVHSYVKESIEKIEGV-ETGRSV 79 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l-~~~~P~~v~s~~~~eGdg~~G-svR~~~~~~g~~~~~~~~kErl~~~-~~~~~~ 79 (151)
+++.++++++||+++|+++++.+++ |+++|++|+|++++||||++| |||.|+|.+|++.. ++|||++.+ ++++++
T Consensus 5 ~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~--~~Kekve~~D~~~~~~ 82 (151)
T PF00407_consen 5 KLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFK--YVKEKVEAIDEENKTI 82 (151)
T ss_dssp EEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEE--EEEEEEEEEETTTTEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcc--eeEEEEEeecCCCcEE
Confidence 7889999999999999999986665 999999999999999999777 99999999988764 799999999 888999
Q ss_pred EEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhhc
Q 031888 80 TYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 80 ~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 150 (151)
+|+++||+++..|.+|.+++++.|.++| +|+++|+++|++.++..++|+.+++++.+++|+||+|||+
T Consensus 83 ~y~viEGd~l~~~~~~~~~~~~~~~~~g---~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLla 150 (151)
T PF00407_consen 83 TYTVIEGDVLGDYKSFKSTIQKIPKGDG---GCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLA 150 (151)
T ss_dssp EEEEEEETTGTTTEEEEEEEEEEEETTS---CEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccccccEEEEEEEEEecCCCCC---ceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998789999999999999886 8999999999999999989999999999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=5.8e-35 Score=214.00 Aligned_cols=143 Identities=28% Similarity=0.594 Sum_probs=130.5
Q ss_pred ccEEEEEEEcCCHHHHHHHhhCCCc-c-cccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEE-eCccE
Q 031888 2 KKMKGQVVLNLPAEKAWEMYRNNEI-I-SKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGV-ETGRS 78 (151)
Q Consensus 2 ~~~~~~~~i~a~a~~vW~~~~d~~~-l-~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~-~~~~~ 78 (151)
++++.+++|+||||+||++++||.+ + +.|+| .|++|++++|+|++||||.|++.+|++.. .++|||+.+ +++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~--~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVK--YVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcce--EEEEEEEEEcccccE
Confidence 5789999999999999999999984 6 56777 79999999999999999999999887433 599999999 88999
Q ss_pred EEEEEEeCCCCC-ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhhc
Q 031888 79 VTYLVVDGELKG-MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 79 ~~y~iieg~~~~-~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 150 (151)
++|++++|+++. +|++|.++++|.|.+++ +|+++|+++|++.++++++|+.+++.+..++++++.|++.
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~---~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDG---GCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCC---CEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhc
Confidence 999999999874 69999999999999664 8999999999999999999999999999999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.81 E-value=6.4e-18 Score=119.47 Aligned_cols=134 Identities=22% Similarity=0.330 Sum_probs=110.3
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEE-eCccEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGV-ETGRSVTY 81 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~-~~~~~~~y 81 (151)
+++.+++|++|+++||+++.|+.++++|+|. +.++++.++++++|+++.+.+..|. .++++++.+ +.++++.|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~-----~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPA-VASCELEGGGPGVGAVRTVTLKDGG-----TVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccC-cceEEeecCCCCCCeEEEEEeCCCC-----EEEEEehhcCccCCEEEE
Confidence 5789999999999999999999999999997 7788887665468999999987662 488999988 55599999
Q ss_pred EEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhhh
Q 031888 82 LVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKFQ 148 (151)
Q Consensus 82 ~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~l 148 (151)
++.+|+.+ +.++.+++++.|.+++ +|.|+|+..|++.++ .+.+. .+.+.....+++|.++|
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~~~---~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPLP--VKNYVATIRVTPEGDG---GTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCCC--cccceEEEEEEECCCC---ccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988544 7789999999998775 899999999999876 22222 33666677888888776
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.70 E-value=4.7e-15 Score=104.74 Aligned_cols=107 Identities=23% Similarity=0.421 Sum_probs=87.0
Q ss_pred CccEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEe-CccEE
Q 031888 1 MKKMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVE-TGRSV 79 (151)
Q Consensus 1 M~~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~-~~~~~ 79 (151)
|.+++.++.|+|||++||+.++|+.++++|.|. +.++++.+++ ++|..+.+...... .+++++..++ .++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~~-----~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPG-VKSVELLSGG-GPGTERTVRVAGRG-----TVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTT-EEEEEEEEEC-STEEEEEEEECSCS-----EEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhc-eEEEEEcccc-ccceeEEEEecccc-----ceeEEEEEecCCCcEE
Confidence 899999999999999999999999999999996 7788887633 44666677653322 4899999884 49999
Q ss_pred EEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEe
Q 031888 80 TYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEP 122 (151)
Q Consensus 80 ~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~ 122 (151)
.|++. ..+ +.++.+++++.|.++ ||.|+|+.+|++
T Consensus 74 ~~~~~--~~~--~~~~~~~~~~~~~~~----gt~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV--PSG--FTNGTGRWRFEPVGD----GTRVTWTVEFEP 108 (139)
T ss_dssp EEEEE--SSS--SCEEEEEEEEEEETT----TEEEEEEEEEEE
T ss_pred EEEEE--ecc--eeEEEEEEEEEEcCC----CEEEEEEEEEEE
Confidence 99997 222 678899999999876 699999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.67 E-value=6.8e-15 Score=105.50 Aligned_cols=136 Identities=13% Similarity=0.252 Sum_probs=93.2
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcc--eeeeEEEEEEEE-eCccEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHS--YVKESIEKIEGV-ETGRSVT 80 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~--~~~~~kErl~~~-~~~~~~~ 80 (151)
++.++.|++|+++||+++.|++++|+|+|+ +++++++++.+. +.........+... .+..+..++.+. +.++.+.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 78 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFEARVVLELREREEFPRELD 78 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEE
Confidence 357899999999999999999999999997 888888766431 21111110000000 000244555655 4589999
Q ss_pred EEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhhh
Q 031888 81 YLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKFQ 148 (151)
Q Consensus 81 y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~l 148 (151)
|++++|+ +..+.+++++.|.+++ ++|.++|++.++|.... |.+. ...+.+..++++|.+.+
T Consensus 79 ~~~~~g~----~~~~~g~w~~~~~~~~--~~t~v~~~~~~~~~~~~-p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 79 FEMVEGD----FKRFEGSWRLEPLADG--GGTLLTYEVEVKPDFFA-PVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred EEEcCCc----hhceEEEEEEEECCCC--CeEEEEEEEEEEeCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886 7889999999999872 28999999999998643 2211 22455566777766554
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.63 E-value=4.3e-14 Score=99.59 Aligned_cols=108 Identities=24% Similarity=0.347 Sum_probs=86.1
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCC-CCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGD-GSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGd-g~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
++.++.|+||+|+||+++.|+.++++|.|. +.+++.+.++ .++|+..++....++... .++++++.+++++.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~--~~~~~v~~~~p~~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRI--ELTYEITEYEPGRRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceE--EEEEEEEEecCCcEEEEE
Confidence 367899999999999999999999999997 6677776543 378888888765443322 378888877788999999
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeC
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPL 123 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~ 123 (151)
..+|+ + .+..++++.|.++ +|.++|+.+|+..
T Consensus 78 ~~~~~----~-~~~~~~~~~~~~~----~t~v~~~~~~~~~ 109 (140)
T cd08865 78 GSSGP----F-PYEDTYTFEPVGG----GTRVRYTAELEPG 109 (140)
T ss_pred ecCCC----c-ceEEEEEEEEcCC----ceEEEEEEEEccc
Confidence 87664 2 3688999999755 7999999999973
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=4.1e-13 Score=95.13 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=83.3
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCC-CCCCeEEEEEecCCCcceeeeEEEEEEEE--eCccEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGD-GSPGSLRLFKLGPAVHSYVKESIEKIEGV--ETGRSV 79 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGd-g~~GsvR~~~~~~g~~~~~~~~kErl~~~--~~~~~~ 79 (151)
+++.++.|+||+++||+++.|+.++|+|+|. +.++++++++ ++.+...++++..++. ..+-+..+ ++++.+
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i 76 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGI-----KDTYALEYTWDGAGSV 76 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeE-----EEEEEEEEEEcCCCcE
Confidence 6789999999999999999999999999997 8888886543 3434444555543321 11212223 346889
Q ss_pred EEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 80 TYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 80 ~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
+|+..+|.. ..++.+++++.|.++ +|.|+|+.++++..+
T Consensus 77 ~~~~~~~~~---~~~~~~~~~~~~~~~----~t~vt~~~~~~~~~~ 115 (140)
T cd07819 77 SWTLVEGEG---NRSQEGSYTLTPKGD----GTRVTFDLTVELTVP 115 (140)
T ss_pred EEEEecccc---eeEEEEEEEEEECCC----CEEEEEEEEEEecCC
Confidence 999998763 678899999999866 799999999998765
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.55 E-value=1.2e-13 Score=98.74 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=97.9
Q ss_pred EEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEEE
Q 031888 5 KGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVV 84 (151)
Q Consensus 5 ~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ii 84 (151)
+.++.|++|++.||+++.|++++|+|+|+ +.+++++++++ .+...++.+.-++... .+..++. ++.++++++..+
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRE--SFTSRVT-LVPPESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccE--EEEEEEE-ecCCCEEEEEec
Confidence 67899999999999999999999999997 77888887654 3444445554333222 2445544 455889999999
Q ss_pred eCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCC--hHHHHHHHHHHHHHHHhhhh
Q 031888 85 DGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPA--PEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 85 eg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~k~ie~~l~ 149 (151)
+|. ++.+.+++++.|.++| +|.|+|.+.|++.++.... ..-+.+....+++++.+.+.
T Consensus 77 ~g~----~~~~~g~w~~~p~~~~---~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 77 DGP----FKHLEGEWRFKPLGEN---ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred CCC----hhhceeEEEEEECCCC---CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 884 7889999999999875 8999999999998652100 11235566777777776553
No 9
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.54 E-value=1.3e-12 Score=93.46 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=81.8
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEE-eCccEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGV-ETGRSVTYL 82 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~-~~~~~~~y~ 82 (151)
++.+++|++|+++||+++.|+.++|+|+|. .+++.++++++...++.+....++... .. +....+ .+++++.|.
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~i~~~ 75 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT--VHVERLELDGGVERLRMWATAFDGSVH--TW-TSRRVLDPEGRRIVFR 75 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEE--EE-EEEEEEcCCCCEEEEE
Confidence 367899999999999999999999999996 344444433221245555554333222 12 333345 448899999
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
.+++..+ +..+.++++|.|.+++ +|.|+|+.+|++...
T Consensus 76 ~~~~~~~--~~~~~g~w~~~~~~~~---~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 76 QEEPPPP--VASMSGEWRFEPLGGG---GTRVTLRHDFTLGID 113 (142)
T ss_pred EeeCCCC--hhhheeEEEEEECCCC---cEEEEEEEEEEECCC
Confidence 9986543 7899999999999864 899999999999865
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.49 E-value=3.2e-12 Score=90.47 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=82.5
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
+++.++.|+||+++||+++.|+.++++|+|+ +.++++..+..++|+..+++...+. .+..++.++++++++.++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~-----~~~~~i~~~~p~~~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV-----RSTFTVTELRPGHSFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCc-ceEEEEecCCCCCCcEEEEecCCCC-----ceEEEEEEecCCCEEEEE
Confidence 5788999999999999999999999999997 7888886543267877666653322 367788877677789887
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeC
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPL 123 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~ 123 (151)
.... ...+..++++.|.+++ +|.++|+.+|...
T Consensus 76 ~~~~-----~~~~~~~~~~~~~~~~---~t~l~~~~~~~~~ 108 (138)
T cd08862 76 GPAP-----GISAVHRHEFEAKPDG---GVRVTTSESLSGP 108 (138)
T ss_pred ecCC-----CEEEEEEEEEEEcCCC---cEEEEEEEEeecc
Confidence 6432 2345689999998754 8999999988754
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=1.1e-11 Score=87.54 Aligned_cols=135 Identities=14% Similarity=0.091 Sum_probs=93.3
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCC-cceeeeEEEEEEEEeCccEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~-~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
++.++.|+||+++||+++.|+.++++|+|. +.+++... .++|+...+.+..++ ... .+.+++.++++++++.|+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~--~~~~~v~~~~p~~~~~~~ 76 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPR--SFKPRVTEVEPPRRLAWR 76 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcE--EEEEEEEEEcCCCEeEEE
Confidence 678999999999999999999999999996 55554321 467777777765332 222 377888878888999999
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCC---ChHHHHHHHHHHHHHHHhhh
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTP---APEKARDAALGFLKCFDKFQ 148 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~k~ie~~l 148 (151)
...++.. ......+++|.|.+++ +|.++|+..|........ -...+.+.+..++++|.+++
T Consensus 77 ~~~~~~~--~~~~~~~~~~~~~~~~---~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 77 GGLPFPG--LLDGEHSFELEPLGDG---GTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred ecCCCCc--EeeEEEEEEEEEcCCC---cEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 8877643 3456789999997554 899999988865322110 11123444455555555543
No 12
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=8.3e-12 Score=89.37 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=95.6
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCC--CCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGD--GSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVT 80 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGd--g~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~ 80 (151)
.++.++.|+||+++||+++.|+.++|+|.|..... ....++ -++|+..++.+...+... .+..++.++++++++.
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~g~~~--~~~~~v~~~~p~~~l~ 77 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVR-EAIDGPRILAVGDVFRMAMRLDGGPY--RITNHVVAFEENRLIA 77 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccc-cccCCCccCCCCCEEEEEEEcCCCce--EEEEEEEEECCCCEEE
Confidence 36889999999999999999999999999852221 222333 378888887765422222 3666777778888999
Q ss_pred EEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC--C-ChHHHHHHHHHHHHHHHhhh
Q 031888 81 YLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST--P-APEKARDAALGFLKCFDKFQ 148 (151)
Q Consensus 81 y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~k~ie~~l 148 (151)
|+..-.+.+ ......++++.|.++| +|.++++..|...+... + ........+...+.+|++||
T Consensus 78 ~~~~~~~~~--~~~~~~~~~l~~~~~g---~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQE--PGGHRWRWELEPIGPG---RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCCC--CCceeEEEEEEECCCC---cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 986421211 2345678899998764 89999999988664421 1 12234566678888888876
No 13
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.7e-11 Score=84.18 Aligned_cols=112 Identities=15% Similarity=0.238 Sum_probs=88.7
Q ss_pred EEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCC-CCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEE
Q 031888 5 KGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGD-GSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLV 83 (151)
Q Consensus 5 ~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGd-g~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~i 83 (151)
+.++.|++|+++||+++.|+.++++|+|. +.++++.++. ...|....+.+..+.. . ....++..++++..++|++
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGRR-L--TLTSEVTEVDPPRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcc-cceEEEcCCCCccceeEEEEEecCCcc-c--cceEEEEEecCCCceEEEE
Confidence 57889999999999999999999999997 7777776553 3666776666642222 1 3678877665578999999
Q ss_pred EeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 84 VDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 84 ieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
..++.. ..+..++++.+.+++ +|.++|+.++++....
T Consensus 78 ~~~~~~---~~~~~~~~~~~~~~~---~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 78 TGGGGG---VDGTGEWRLEPEGDG---GTRVTYTVEYDPPGPL 114 (141)
T ss_pred ecCCCC---cceeEEEEEEECCCC---cEEEEEEEEEecCCcc
Confidence 987753 578999999998763 8999999999998765
No 14
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=7.5e-12 Score=89.69 Aligned_cols=110 Identities=16% Similarity=0.248 Sum_probs=88.8
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCC-C--CCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGD-G--SPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVT 80 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGd-g--~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~ 80 (151)
++.++.|+||+|+||+.+.|..++++|+|. +.++++++.+ + .+|+.-.+++..++... .++-+++.+++++.+.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~--~w~~~it~~~p~~~f~ 77 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDNLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ--RWTTEITEVEPPRRFV 77 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcchHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCce--EEEEEEEEEcCCCeEE
Confidence 367899999999999999999999999997 6688886432 2 56888888887665333 3677777667788999
Q ss_pred EEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCC
Q 031888 81 YLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLT 124 (151)
Q Consensus 81 y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~ 124 (151)
+..+.|+ +..+..++.+.|.++ ||.++++++|+...
T Consensus 78 ~~~~~G~----~~~w~h~~~f~~~~~----gT~vt~~v~~~~p~ 113 (137)
T cd07820 78 DEQVSGP----FRSWRHTHRFEAIGG----GTLMTDRVEYRLPL 113 (137)
T ss_pred EEeccCC----chhCEEEEEEEECCC----ceEEEEEEEEeCCc
Confidence 9998876 567888889998755 79999999999953
No 15
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=2.4e-11 Score=86.04 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=80.9
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLV 83 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~i 83 (151)
++.++.|+||+++||+++.|+.++|+|.|. +.+++++.+. +.-..+....|. .. .+..++..+++++.+.|..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~-~~--~~~~~v~~~~~~~~i~~~~ 74 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSH-VESVEQLDDT---RSHWKAKGPAGL-SV--EWDAEITEQVPNERIAWRS 74 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhh-hcEEEEcCCC---ceEEEEecCCCC-cE--EEEEEEeccCCCCEEEEEE
Confidence 678999999999999999999999999997 7788876441 222223332233 22 3666666556777899998
Q ss_pred EeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 84 VDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 84 ieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
..|. + .+.+++.+.|.+++ +|.+++++.|++...
T Consensus 75 ~~~~----~-~~~~~~~f~~~~~~---~T~vt~~~~~~~~~~ 108 (139)
T cd07817 75 VEGA----D-PNAGSVRFRPAPGR---GTRVTLTIEYEPPGG 108 (139)
T ss_pred CCCC----C-CcceEEEEEECCCC---CeEEEEEEEEECCcc
Confidence 7764 3 57799999997764 899999999998864
No 16
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=5.5e-11 Score=86.06 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=81.1
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEc--CCCCCCeEEEEEecCC-CcceeeeEEEEEEEEeCccEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQ--GDGSPGSLRLFKLGPA-VHSYVKESIEKIEGVETGRSVT 80 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~e--Gdg~~GsvR~~~~~~g-~~~~~~~~kErl~~~~~~~~~~ 80 (151)
+..+..|++|+|+||+++.|+.++|+|+|+ +.++++++ ++.++|+.-+...... +... .+.-++.+.++++.+.
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~v~~~~p~~~~~ 79 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAESWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRL--RFELRVTRIEPLSLLE 79 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhhcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEE--EEEEEEEeecCCcEEE
Confidence 567889999999999999999999999997 78888876 3347787765543222 2111 2445555557889999
Q ss_pred EEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 81 YLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 81 y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
|.. +|++ . ...+++|.|.++ ||.|+++.+++..++
T Consensus 80 ~~~-~g~~----~-~~~~~~~~~~~~----gt~vt~~~~~~~~~~ 114 (146)
T cd07824 80 VRA-SGDL----E-GVGRWTLAPDGS----GTVVRYDWEVRTTKP 114 (146)
T ss_pred EEE-EEee----e-EEEEEEEEEcCC----CEEEEEEEEEEcCHH
Confidence 985 6653 3 368899999655 799999999998653
No 17
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=9e-11 Score=84.62 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=83.1
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccce--EEE--EcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAH--AEY--IQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRS 78 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s--~~~--~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~ 78 (151)
+++.++.|++|+++||+++.|+.++|+|+|.+... ++. .+++.++|+...++...+.. ....++..++++++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~----~~~~~v~~~~p~~~ 78 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG----EGEMEITESVPNER 78 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc----ceEEEEEecCCCcE
Confidence 57889999999999999999999999999953221 222 12334788887776544211 13456665578899
Q ss_pred EEEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 79 VTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 79 ~~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
+.|+...++.. -.+...++++.|.++ ||.++|+.+|+....
T Consensus 79 i~~~~~~~~~~--~~~~~~~~~~~~~~~----gT~v~~~~~~~~~~~ 119 (150)
T cd07818 79 IEYELRFIKPF--EATNDVEFTLEPVGG----GTKVTWGMSGELPFP 119 (150)
T ss_pred EEEEEEecCCc--cccceEEEEEEEcCC----ceEEEEEEEecCCch
Confidence 99999864432 136789999999944 899999999997755
No 18
>PRK10724 hypothetical protein; Provisional
Probab=99.36 E-value=1.8e-11 Score=90.77 Aligned_cols=134 Identities=14% Similarity=0.225 Sum_probs=96.1
Q ss_pred CccEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEE
Q 031888 1 MKKMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVT 80 (151)
Q Consensus 1 M~~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~ 80 (151)
|+++..++.|++|++++|+++.|..+.|+|+|. .+++++++-++. +.+..++.+-++-.. .+..|+.- ..++++.
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~--~f~srv~~-~~~~~I~ 88 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISK--TFTTRNQL-TSNQSIL 88 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccE--EEEEEEEe-cCCCEEE
Confidence 789999999999999999999999999999997 556677654332 234444443333222 25555443 5666899
Q ss_pred EEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCC--hHHHHHHHHHHHHHHHh
Q 031888 81 YLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPA--PEKARDAALGFLKCFDK 146 (151)
Q Consensus 81 y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~k~ie~ 146 (151)
+.+++|+ |+.+.+.|++.|.+++ +|.|++..+|+.....-.. .....+.+..|.+++++
T Consensus 89 ~~~~~Gp----F~~l~g~W~f~p~~~~---~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 89 MQLVDGP----FKKLIGGWKFTPLSQE---ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred EEecCCC----hhhccceEEEEECCCC---CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 8999999999998864 8999999999966553210 11224555666666665
No 19
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.35 E-value=6.6e-11 Score=83.60 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=92.1
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLV 83 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~i 83 (151)
++.+++|+||+++||+++.|+.++|+|+|. ...++.....| |+.+......++... .+..++.++++++.+.|+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~--~~~~~i~~~~~~~~i~~~~ 76 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEG--WVSGEVLEVEPPRRLVFTW 76 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEE--eccEEEEEEcCCCeEEEEe
Confidence 678999999999999999999999999995 22222211122 677765544322222 3678888778889999999
Q ss_pred EeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCC-ChHHHHHHHHHHHHHHHhhh
Q 031888 84 VDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTP-APEKARDAALGFLKCFDKFQ 148 (151)
Q Consensus 84 ieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~k~ie~~l 148 (151)
..++. ...-....++++.|.++ +|.++|+.++.+...... --......+..++..|.+||
T Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~~----~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 77 AFSDE-TPGPETTVTVTLEETGG----GTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred cccCC-CCCCceEEEEEEEECCC----CEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHh
Confidence 98754 11355788899999875 799999999988643200 01122444556666666665
No 20
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.35 E-value=6.5e-11 Score=84.14 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=78.2
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
+++.++.|++|+++||+++.|++++++|+|+ +++++.++++. .....++.+.+.+... ...-++.+.++++.+.++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 77 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTF--KGKVELSDLDPPESYTIT 77 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEE--EEEEEEEecCCCcEEEEE
Confidence 5788999999999999999999999999997 66777665322 1111122221111111 123444444556778888
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
....+. .....+..++++.|. ++ +|.|+|+++|++.+..
T Consensus 78 ~~~~~~-~~~~~~~~~~~l~~~-~~---gT~v~~~~~~~~~g~l 116 (144)
T cd05018 78 GEGKGG-AGFVKGTARVTLEPD-GG---GTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEcCC-CceEEEEEEEEEEec-CC---cEEEEEEEEEEEccCh
Confidence 764332 125689999999998 43 8999999999987653
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.27 E-value=2.7e-10 Score=80.21 Aligned_cols=104 Identities=13% Similarity=0.314 Sum_probs=73.4
Q ss_pred EcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEEEeCCCC
Q 031888 10 LNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVVDGELK 89 (151)
Q Consensus 10 i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~iieg~~~ 89 (151)
|+||+++||+++.|+.++|.|+|. ++++++++.++. +..-.+....++... .+..++... ....+.+..++|+
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~g~-- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKR--SWTSRVTED-PPERIRFEQISGP-- 73 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCE--EEEEEEEEE-CTTTEEEESSETT--
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEE--EEEEEEEEE-EeeeeeeeecCCC--
Confidence 689999999999999999999997 778888876543 333345555444333 366666655 3333889998887
Q ss_pred CceeeEEEEEEEEecCCCCCCccEEEEEEEEEeC
Q 031888 90 GMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPL 123 (151)
Q Consensus 90 ~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~ 123 (151)
++.+.+++++.|.++ .+++|.++++.+++..
T Consensus 74 --~~~~~g~W~~~~~~~-~~~g~~~~v~~~~~~~ 104 (130)
T PF03364_consen 74 --FKSFEGSWRFEPLGG-NEGGTRTRVTYDYEVD 104 (130)
T ss_dssp --EEEEEEEEEEEEETT-ECCEEEEEEEEEEEEE
T ss_pred --chhcEEEEEEEECCC-CcCCCEEEEEEEEEEe
Confidence 899999999999975 0014555666666553
No 22
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.26 E-value=7.6e-10 Score=80.85 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=80.0
Q ss_pred ccEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCC-CCCeEEEEEecCCCcceeeeEEEEEEEE-eCccEE
Q 031888 2 KKMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDG-SPGSLRLFKLGPAVHSYVKESIEKIEGV-ETGRSV 79 (151)
Q Consensus 2 ~~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg-~~GsvR~~~~~~g~~~~~~~~kErl~~~-~~~~~~ 79 (151)
+..+.+++|++||+.||+++.|..+.|.|+|. ..++++++.++ +.|+--++....++...+ +..|+ . . ...+++
T Consensus 1 ~~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~-w~s~~-~-~~~~~~~i 76 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTNDIATWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWS-WVSER-T-LDPVNRTV 76 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHHhhhhhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEE-EEEEE-E-ecCCCcEE
Confidence 45789999999999999999999999999997 77788876543 555322223322332222 22332 2 3 566778
Q ss_pred EEE-EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 80 TYL-VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 80 ~y~-iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
.++ ...| + +....++++|+|.++ ||.|++..+|+..++.
T Consensus 77 ~~~~~~~~--p--~~~m~~~W~f~~~~~----gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 77 RARRVETG--P--FAYMNIRWEYTEVPE----GTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEecCC--C--cceeeeeEEEEECCC----CEEEEEEEEEEECCCC
Confidence 774 2232 2 889999999999955 6999999999977543
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.07 E-value=4.7e-09 Score=75.87 Aligned_cols=136 Identities=12% Similarity=0.106 Sum_probs=81.8
Q ss_pred EEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEe-CccEEEEEE
Q 031888 5 KGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVE-TGRSVTYLV 83 (151)
Q Consensus 5 ~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~-~~~~~~y~i 83 (151)
+.++.|++|+++||+++.|+.+++.|+|+ +++++..+ ++. ..-.+++.-|.-...-..+=++..++ +++.+.+..
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg-~~~~~~~~-~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPG-ASLTEVEG-DDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCC-ceeccccC-CCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE
Confidence 56889999999999999999999999997 77766543 222 22233333222111100122444444 788888875
Q ss_pred EeCCCCC-ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCCh-H----HHHHHHHHHHHHHHhhh
Q 031888 84 VDGELKG-MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAP-E----KARDAALGFLKCFDKFQ 148 (151)
Q Consensus 84 ieg~~~~-~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~-~----~~~~~~~~~~k~ie~~l 148 (151)
-..+... ---....++++.|. ++ +|.|+|+++++..+....-. . .....+..++++|.+.+
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~~-~~---gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSPA-GG---GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEecCCCcceEEEEEEEEEEec-CC---cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 5421110 01246778888884 33 89999999998776642111 1 22444455666666554
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.89 E-value=4.4e-08 Score=69.82 Aligned_cols=135 Identities=14% Similarity=0.220 Sum_probs=84.5
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
.++.++.|+||+++||+++.|...+++|.|... .....+.+..| .+.+.++... ...-++..+++++.+.|+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~--~~~~~~~~~~g---~~~~~~~~~~---~~~~~i~~~~p~~~l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL--GPFVVGEGATG---EITYPGYEHG---VFPVTVVEVDPPRRFSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC--CCcccCCccee---EEecCCCCcc---ceEEEEEEeCCCcEEEEE
Confidence 578899999999999999999999999998532 11111222222 3334332111 245566766899999999
Q ss_pred EEeCC----CC-CceeeEEEEEEEEecCCCCCCccEEEEEEE-EEeCCCCCC--ChHHHHHHHHHHHHHHHhhhh
Q 031888 83 VVDGE----LK-GMYDPYRVTFSFTPVEGKQDEMCIAEWAAE-FEPLTTSTP--APEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 83 iieg~----~~-~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~-~~~~~~~~~--~~~~~~~~~~~~~k~ie~~l~ 149 (151)
..... .. ..-.....++++.|.++ +|.|+++-. |...++... ......+-...++..|++||-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIAG----GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecCC----cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 76443 10 11233568889999765 799999876 432221110 112334556888899998885
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.85 E-value=1.9e-07 Score=65.65 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=84.6
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
+++.++.|+||+++||+++.|...++.|.+... + +++..+|.--++........ .+.=++.++++++.+.|+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~--~---~~~~~~G~~~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~ 72 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPEFTRQYWGGTT--V---ESDWKVGSAFEYRRGDDGTV---DVEGEVLESDPPRRLVHT 72 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCchhhhheecccc--c---ccCCcCCCeEEEEeCCCccc---ccceEEEEecCCCeEEEE
Confidence 578899999999999999999999999997521 1 33434555444544432111 144456655788888888
Q ss_pred EEeCCCC--CceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhh
Q 031888 83 VVDGELK--GMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 83 iieg~~~--~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 149 (151)
...+..+ ..-.....++.+.|.++ +|.++.+.+..+.+. ..-.........+++.|.+||-
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~l~~~~~----~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 73 WRAVWDPEMAAEPPSRVTFEIEPVGD----VVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EecCCCcccCCCCCEEEEEEEEecCC----cEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHhc
Confidence 7644321 11235677888888654 687777765543221 1123345556778888888763
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.85 E-value=1.1e-07 Score=69.87 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=85.9
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
.++.++.|+||+++||+++.|+..++.|.|.. ..+-.+|...++.+.+... . ....++.++++++++.|+
T Consensus 12 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~--~~~~~v~e~~p~~~l~~~ 81 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALTDPERLARWFAPG-------TGDLRVGGRVEFVMDDEEG-P--NATGTILACEPPRLLAFT 81 (157)
T ss_pred EEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-------CCCcccCceEEEEecCCCC-C--ccceEEEEEcCCcEEEEE
Confidence 47889999999999999999999999999841 1233456666666644211 1 256677766888999999
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhh
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 149 (151)
...++ .....+++|.+.++ +|.++.+.++.+... ......+....++..|.+||-
T Consensus 82 ~~~~~-----~~~~~~~~l~~~~~----gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e 136 (157)
T cd08899 82 WGEGG-----GESEVRFELAPEGD----GTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALE 136 (157)
T ss_pred ecCCC-----CCceEEEEEEEcCC----CEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHc
Confidence 87554 12356778888653 799988888765441 223334555667777777764
No 27
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.80 E-value=1.1e-06 Score=63.18 Aligned_cols=139 Identities=9% Similarity=0.001 Sum_probs=84.0
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCcc-ccceEEEEcCCCCCCeEEEEEec-CCCcceeeeEEEEEEEEeCccEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPE-MLAHAEYIQGDGSPGSLRLFKLG-PAVHSYVKESIEKIEGVETGRSVTY 81 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~-~v~s~~~~eGdg~~GsvR~~~~~-~g~~~~~~~~kErl~~~~~~~~~~y 81 (151)
++.+..++||+++||+++.|...+.+|+.. ---.+...+.|-.+|..-.+.+. +++... ...=++.+++++++|.|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~--~~~g~~~~~~p~~~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEI--TVEARYHDIVPDERIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEE--eeeEEEEEecCCceEEE
Confidence 567889999999999999999989888842 01112222334344444344432 333322 13445555588999988
Q ss_pred EEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhh
Q 031888 82 LVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 82 ~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 149 (151)
+.........-.....++++.|.++ +|.++.+-..-...+.. .......-...++..|++||-
T Consensus 80 t~~~~~~~~~~~~s~v~~~l~~~~~----gT~l~~~~~~~~~~~~~-~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 80 TYTMHIGGTLLSASLATVEFAPEGG----GTRLTLTEQGAFLDGDD-DPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEeeccCCccccceEEEEEEEECCC----CEEEEEEEEEecccccc-hhhhHHHHHHHHHHHHHHHHh
Confidence 8643211111123457888888754 79988877653222211 123445666888899998874
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.80 E-value=2.6e-07 Score=66.69 Aligned_cols=139 Identities=10% Similarity=-0.007 Sum_probs=86.0
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEec-CCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLG-PAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~-~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
++.+..++||+++||+++.|...+.+|....--.+...+.|..+|..-++.+. +++... .+.=++.+++++++|.|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~--~~~g~~~ei~p~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEM--GFHGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEe--cceEEEEEEcCCCEEEEE
Confidence 67889999999999999999998888885422223333445445554455443 232222 134455656788888887
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHhhhhc
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST-PAPEKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~k~ie~~l~~ 150 (151)
---.+.. -.....++++.|.++ +|.++.+..|....... ..-....+-...++.+|++||.+
T Consensus 80 ~~~~~~~--~~~s~v~~~l~~~~~----gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 80 EEFEGLP--DGVALETVTFTELGG----RTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred eEecCCC--CCceEEEEEEEECCC----CEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 6433321 133567888898754 79999876653211100 01113355668899999999864
No 29
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.79 E-value=2e-07 Score=68.03 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=92.5
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEE-eCccEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGV-ETGRSVTY 81 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~-~~~~~~~y 81 (151)
.++.+..|++|+++||+++.|+..+...+|+ ++|++. +||.-. ..-.+.+++=...+ .-+-++..+ +++++++.
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG-~qs~e~-~g~e~~-~~v~l~ig~l~~~~--~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPG-VQSVET-NGDEYT-AKVKLKIGPLKGTF--SGRVRFVNVDEPPRSITI 76 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCC-cceeee-cCCeEE-EEEEEeecceeEEE--EEEEEEccccCCCcEEEE
Confidence 4577899999999999999999999999998 999876 455211 12222222111111 234555555 78888888
Q ss_pred EEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC-CChH----HHHHHHHHHHHHHHhhhh
Q 031888 82 LVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST-PAPE----KARDAALGFLKCFDKFQL 149 (151)
Q Consensus 82 ~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~-~~~~----~~~~~~~~~~k~ie~~l~ 149 (151)
+--+|.. .-+-+.++.+++.|.++ +|++.|.+.-+-.+... .=+. -.++....+|++|.++|.
T Consensus 77 ~g~G~~~-~g~~~~~~~v~l~~~g~----gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 77 NGSGGGA-AGFADGTVDVQLEPSGE----GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred Eeecccc-cceeeeeeEEEEEEcCC----CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876443 33677888888999876 69999999888765431 0111 235566777788877764
No 30
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=1.9e-07 Score=66.99 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=81.3
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCc-cccceEEEEcCCCCCCeEEEEEe-cCCCcceeeeEEEEEEEEeCccEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINP-EMLAHAEYIQGDGSPGSLRLFKL-GPAVHSYVKESIEKIEGVETGRSVTY 81 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P-~~v~s~~~~eGdg~~GsvR~~~~-~~g~~~~~~~~kErl~~~~~~~~~~y 81 (151)
++.+..|+||+++||+++.|...+.+|.+ .-+.. ...+.|..+|..-++.+ .+++... ...=++.+++++++|.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~g~~~--~~~g~v~e~~p~~~l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPDGTDY--PNRIVFLEIEPPERIVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcc-eEEEEEecCCCEEEEEEECCCCCEe--cceEEEEEEcCCCEEEE
Confidence 67889999999999999999998888873 32221 11222333444434333 3333221 12345666689999999
Q ss_pred EEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHhhhh
Q 031888 82 LVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST-PAPEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 82 ~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~k~ie~~l~ 149 (151)
+.-.++. ....++++.|.++ +|.++.+..|....... .......+-...++.+|++||.
T Consensus 79 t~~~~~~-----~~~v~~~~~~~~~----gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSGPP-----RFRLTVTFEEQGG----KTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccCCC-----cEEEEEEEEECCC----CEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 9854421 2457889998754 79998887642211000 0001123446788888988874
No 31
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=5.4e-07 Score=64.10 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=83.9
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccce--EEEEcCCCCCCeEEEEEec--CCCcceeeeEEEEEEEEeCccE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAH--AEYIQGDGSPGSLRLFKLG--PAVHSYVKESIEKIEGVETGRS 78 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s--~~~~eGdg~~GsvR~~~~~--~g~~~~~~~~kErl~~~~~~~~ 78 (151)
|++.++.++||+++||+++.|...+.+|++. ... +...+.|..+|..-++.+. +|.... .+.=++.+++++++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~--~~~g~~~ei~p~~~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTPEHITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGF--DFEGTYTEVEPHKL 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHHHHhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCccc--ccceEEEEECCCCE
Confidence 5788999999999999999999999999643 111 1122334455555454442 222111 13445555689999
Q ss_pred EEEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhhc
Q 031888 79 VTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 79 ~~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 150 (151)
+.|+..++ ...++++.|.++ +|.++-+ +.+.... ..+....-...++..|++||-+
T Consensus 78 l~~~~~~~--------~~v~~~l~~~~~----gT~l~l~--~~~~~~~--~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 78 IEYTMEDG--------REVEVEFTEEGD----GTKVVET--FDAENEN--PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEEcCCC--------CEEEEEEEECCC----CEEEEEE--ECCCCCC--cHHHHHHHHHHHHHHHHHHhhC
Confidence 99996432 357889999754 7988764 4443221 2345566778899999999853
No 32
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.75 E-value=1.9e-07 Score=70.16 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=86.3
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEec-CCCcceeeeEEEEEEEEeCccEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLG-PAVHSYVKESIEKIEGVETGRSVTY 81 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~-~g~~~~~~~~kErl~~~~~~~~~~y 81 (151)
.++.+++|+.|+|.||+.++|+.++|.||.+ +.|+++.+.+. .+|+.. +++...+ +.-+|+...++..|.|
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~--Wea~it~d~~~e~I~W 142 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLENLPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVE--WEAEITKDIPGERIQW 142 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhhhhhHHHHh-hceeeccCCCc-----cceeEcCCCCceEE--EeehhhccCCCcEEee
Confidence 5688999999999999999999999999986 99999876542 466664 3554443 6677775579999999
Q ss_pred EEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 82 LVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 82 ~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
+=++|.-.+ -++.++|.+..+. .|.|+-+++|.|.+..
T Consensus 143 ~Sl~Ga~v~----NsG~VrF~~~pg~---~t~V~v~lsY~~Pgg~ 180 (217)
T COG5637 143 ESLPGARVE----NSGAVRFYDAPGD---STEVKVTLSYRPPGGL 180 (217)
T ss_pred ecCCCCcCC----CCccEEeeeCCCC---ceEEEEEEEecCCccH
Confidence 999996431 3566888888763 7899999999988764
No 33
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=3.6e-07 Score=66.00 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=80.6
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEe-cCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKL-GPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~-~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
+..++.|+||+|+||+++.|...+.+|++.-=-++...+.|..+|..-++.+ .+++... ...=++.++++++++.|+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~--~~~g~v~~i~p~~~l~~t 79 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEF--PNPGCFLEVVPGERLVFT 79 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEe--cceEEEEEEeCCCEEEEE
Confidence 5778999999999999999999888887421001111122333343334444 3333322 134556666889999998
Q ss_pred EEe--CCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHhhhhc
Q 031888 83 VVD--GELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST-PAPEKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 83 iie--g~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~k~ie~~l~~ 150 (151)
-.- +..+..-..-..++++.|.++ +|.++.+..+....... .......+-...++.+|++||.+
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~~~~~----gT~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 80 DALTPGWRPAEKPFMTAIITFEDEGG----GTRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EeecCCcCCCCCCcEEEEEEEEecCC----cEEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 432 211110011456888999755 79998775442110000 00001135568899999999854
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.72 E-value=2.2e-06 Score=61.87 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=84.1
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCc-cccceEEEEcCCCCCCeEEEEEe--cC------CCcceeeeEEEEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINP-EMLAHAEYIQGDGSPGSLRLFKL--GP------AVHSYVKESIEKIEGV 73 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P-~~v~s~~~~eGdg~~GsvR~~~~--~~------g~~~~~~~~kErl~~~ 73 (151)
+++.+..|+||+++||+++.|...+.+|.+ .-+ .+...+.+..+|-.-.+.+ .+ .+... ...=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~--~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDPDALAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTD--VFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEe--eeEEEEEEE
Confidence 367889999999999999999999988875 212 1222223333343333322 22 11111 233456656
Q ss_pred eCccEEEEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhhhh
Q 031888 74 ETGRSVTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKFQL 149 (151)
Q Consensus 74 ~~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 149 (151)
+++++|.|+..-.+... -.....++++.+.++ +|.++++...-+.. .......+-...++..|++||-
T Consensus 78 ~p~~~i~~~~~~~~~~~-~~~~~v~~~~~~~~~----~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNERIVYTDVFDDPSL-SGEMTMTWTLSPVSG----GTDVTIVQSGIPDG---IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCEEEEEEEecCCCC-CceEEEEEEEEecCC----CEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHHhc
Confidence 88999999864322110 123468888888754 79999888643221 1234557777889999999874
No 35
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.72 E-value=4.4e-07 Score=65.53 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=78.7
Q ss_pred EEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEEEeC
Q 031888 7 QVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVVDG 86 (151)
Q Consensus 7 ~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~iieg 86 (151)
+.+|++|+++||++|.|.+.+..-+|+ +++.+... +.-.+.++ +.+++-...+ ..+=++...+++..+..++-..
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG-~~~~e~~~-~~~~~~~~-v~vG~i~~~~--~g~~~~~~~~~~~~~~~~~~g~ 76 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPG-VESIEKVG-DEYKGKVK-VKVGPIKGTF--DGEVRITEIDPPESYTLEFEGR 76 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTT-EEEEEEEC-TEEEEEEE-EESCCCEEEE--EEEEEEEEEETTTEEEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCC-cEEeeecC-cEEEEEEE-EEeccEEEEE--EEEEEEEEcCCCcceEeeeecc
Confidence 678999999999999999999999998 88887765 42112221 2322211111 2344445454555544444433
Q ss_pred CCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC-CChH----HHHHHHHHHHHHHHhhh
Q 031888 87 ELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST-PAPE----KARDAALGFLKCFDKFQ 148 (151)
Q Consensus 87 ~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~-~~~~----~~~~~~~~~~k~ie~~l 148 (151)
+... -.+..+.+++...+++ +|.|.|+++++-.+... .-.. ........++++|+..|
T Consensus 77 g~~~-~~~~~~~~~~~~~~~~---~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 77 GRGG-GSSASANITLSLEDDG---GTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp ECTC-CEEEEEEEEEEECCCT---CEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-ceEEEEEEEEEcCCCC---CcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322 3455677777776665 59999999999776542 1112 22445566666666554
No 36
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.62 E-value=5.8e-06 Score=62.32 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=87.5
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceee-eEEE-EEEEEeCccEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVK-ESIE-KIEGVETGRSVT 80 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~-~~kE-rl~~~~~~~~~~ 80 (151)
.+..+..|+++|+++|+++.|.+..|+|.|. +.++++++..+.--.+-.+.+....+...| ++-. +.....++..+.
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~ 120 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVT 120 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEE
Confidence 4677888999999999999999999999996 778888876432123333333322211001 2222 121112245555
Q ss_pred EEEEeCCC--C--C---ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH----HHHHHHHHHHHHHHhhh
Q 031888 81 YLVVDGEL--K--G---MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE----KARDAALGFLKCFDKFQ 148 (151)
Q Consensus 81 y~iieg~~--~--~---~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~----~~~~~~~~~~k~ie~~l 148 (151)
..+..++. + . .+..+.+.+.++|.+++ +|.|++.+.++|.+.. |.. -.......+++++.+.+
T Consensus 121 i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~---~t~vt~~~~~dp~g~i--P~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 121 ITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNG---KTRVTYQAYADPGGSI--PGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEeecCCccCCCCCCeEEceeceeeEEEEECCCC---eEEEEEEEEeCCCCCC--CHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554432 2 1 14677888999999874 8999999999998653 222 12444567777776643
No 37
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.54 E-value=6.9e-07 Score=64.97 Aligned_cols=115 Identities=16% Similarity=0.260 Sum_probs=84.8
Q ss_pred CccEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEE
Q 031888 1 MKKMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVT 80 (151)
Q Consensus 1 M~~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~ 80 (151)
|++++.+.-++.+|+++++++.|....|+++|....+ ++.+.++. ..+-.++.+=++-.. .+.-|+.-.+..+.|.
T Consensus 1 m~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s-~v~~~~~~-~l~A~l~V~~k~i~e--~F~Trv~~~~~~~~I~ 76 (146)
T COG2867 1 MPQIERTALVPYSASQMFDLVNDVESYPEFLPWCSAS-RVLERNER-ELIAELDVGFKGIRE--TFTTRVTLKPTARSID 76 (146)
T ss_pred CCeeEeeeeccCCHHHHHHHHHHHHhCchhccccccc-eEeccCcc-eeEEEEEEEhhheee--eeeeeeeecCchhhhh
Confidence 8899999999999999999999999999999975544 56666542 245555554333111 2334433223444788
Q ss_pred EEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 81 YLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 81 y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
-++++|+ |+...++|+++|.+++ +|.|...++|+.....
T Consensus 77 ~~l~~GP----Fk~L~~~W~F~pl~~~---~ckV~f~ldfeF~s~l 115 (146)
T COG2867 77 MKLIDGP----FKYLKGGWQFTPLSED---ACKVEFFLDFEFKSRL 115 (146)
T ss_pred hhhhcCC----hhhhcCceEEEECCCC---ceEEEEEEEeeehhHH
Confidence 8888887 8899999999997664 9999999999987654
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.41 E-value=1.5e-05 Score=57.61 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=76.7
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCcccc-------ceEEEEcCCCCC-CeEEEEEecCCCcceeeeEEEEEEEEeC
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEML-------AHAEYIQGDGSP-GSLRLFKLGPAVHSYVKESIEKIEGVET 75 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v-------~s~~~~eGdg~~-GsvR~~~~~~g~~~~~~~~kErl~~~~~ 75 (151)
++.++.|+||+++||+++.| .+.+|.+.-- ..|++ |..+ |..+ ....+| .. ...=++.++++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~-~~~~~g-~~---~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVF---EPRAGGRWY-EIGEDG-TE---CEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEE---cccCCcEEE-EecCCC-cE---eceEEEEEEcC
Confidence 67899999999999999999 4667764211 23333 2223 3333 322223 22 23345555588
Q ss_pred ccEEEEEEEeCC-C-C-CceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC-CC---hHHHHHHHHHHHHHHHhhh
Q 031888 76 GRSVTYLVVDGE-L-K-GMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST-PA---PEKARDAALGFLKCFDKFQ 148 (151)
Q Consensus 76 ~~~~~y~iieg~-~-~-~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~-~~---~~~~~~~~~~~~k~ie~~l 148 (151)
+++|.|+-.-++ . . ... .-..++++.|.+++ +|.++.+-..-+..+.. .. ......-...++.+|++||
T Consensus 72 ~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~---gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 72 PSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAE---GTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred CCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCC---CeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 999999865221 1 1 111 23688999998733 79988877764432210 01 1122344577888888887
Q ss_pred h
Q 031888 149 L 149 (151)
Q Consensus 149 ~ 149 (151)
-
T Consensus 148 ~ 148 (149)
T cd08891 148 E 148 (149)
T ss_pred c
Confidence 3
No 39
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.31 E-value=1.5e-05 Score=56.89 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=76.8
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLV 83 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~i 83 (151)
++.++.|+||+++||+++.+...+.+|.+. -.+.++. +|..-.+.+...+.. +.=++.++++++++.|+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~~----~~g~~~~~~p~~~l~~~w 71 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFT-GSSGRLE-----EGKTVTWDWEMYGAS----VPVNVLEIEPNKRIVIEW 71 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhcccccc-CCCcccc-----CCCEEEEEEEccCCc----eEEEEEEEcCCCEEEEEe
Confidence 578899999999999999999989887543 2233332 333334444433322 233455558999999987
Q ss_pred EeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHH------HHHHHHHHHHHHHhhhh
Q 031888 84 VDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEK------ARDAALGFLKCFDKFQL 149 (151)
Q Consensus 84 ieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~------~~~~~~~~~k~ie~~l~ 149 (151)
-.++. . -..++++.+.++| +|.++-+-..-+.. +++. ...-...++..|+.||.
T Consensus 72 ~~~~~---~--s~v~~~l~~~~~g---gT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le 131 (136)
T cd08901 72 GDPGE---P--TTVEWTFEELDDG---RTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLE 131 (136)
T ss_pred cCCCC---C--EEEEEEEEECCCC---cEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 54321 2 4478889997643 79887765432211 1211 12334677888888875
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.28 E-value=8.3e-05 Score=52.49 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=75.2
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLV 83 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~i 83 (151)
++.++.|+||+++||+++.|...+.+|... ..+.+...| |..+ +.+|. +.=++.++++++++.|+-
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~-~~~~d~~~G----G~~~---~~~g~------~~g~~~~i~p~~~l~~~w 67 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRS-PAKVDAKVG----GKFS---LFGGN------ITGEFVELVPGKKIVQKW 67 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCC-CceecCCCC----CEEE---EeCCc------eEEEEEEEcCCCEEEEEE
Confidence 578899999999999999999988888843 333333222 3433 22332 333455567888888876
Q ss_pred EeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHH-HHHHHHHhhh
Q 031888 84 VDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAAL-GFLKCFDKFQ 148 (151)
Q Consensus 84 ieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~k~ie~~l 148 (151)
--.+.+. -..-..++.+.+.++ +|.++.+-..-+.. ..+...+-.. .++..|.++|
T Consensus 68 ~~~~~~~-~~~s~v~~~l~~~~~----gT~ltl~~~g~~~~----~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 68 RFKSWPE-GHYSTVTLTFTEKDD----ETELKLTQTGVPAG----EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EcCCCCC-CCcEEEEEEEEECCC----CEEEEEEEECCCCc----hHHHHHhhHHHHHHHHHHHHh
Confidence 5333221 122457888888744 78887776644332 2233334444 3777777765
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.16 E-value=0.00011 Score=50.80 Aligned_cols=122 Identities=18% Similarity=0.155 Sum_probs=73.5
Q ss_pred cCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEEEeCCCCC
Q 031888 11 NLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVVDGELKG 90 (151)
Q Consensus 11 ~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~iieg~~~~ 90 (151)
+||+++||+++.+...+.+|.+.-... .+..+|..-++. .+++... ...=+++++.++++|.|+.--++...
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~-----~~~~~Gg~~~~~-~~~g~~~--~~~~~v~~~~p~~~i~~~~~~~~~~~ 72 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAE-----MDFRPGGSFRFM-DPDGGEF--GFDGTVLEVEPPERIVFTWRMPDDPD 72 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEE-----EECSTTEEEEEE-ETTSEEE--EEEEEEEEEETTTEEEEEEEEETSSS
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCcce-----eeeecCCEEEEE-ecCCCCc--eeeEEEEEEeCCEEEEEEEEccCCCC
Confidence 689999999999999999993211222 222334433332 2333332 13334666688888999965444321
Q ss_pred ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHH-HHHHHHHHHHHHHhhh
Q 031888 91 MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEK-ARDAALGFLKCFDKFQ 148 (151)
Q Consensus 91 ~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 148 (151)
-.....+++|.+.++ +|.++-+..-.+.... ... .......++.+|.+||
T Consensus 73 -~~~~~v~~~~~~~~~----~T~l~~~~~~~~~~~~---~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 73 -GPESRVTFEFEEEGG----GTRLTLTHSGFPDDDE---EEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp -CEEEEEEEEEEEETT----EEEEEEEEEEEHSHHH---HHHCHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEEEEcCC----cEEEEEEEEcCCccHH---HHHHHHHHHHHHHHHHHHHh
Confidence 235577888899433 8888777622222111 112 4556688888888886
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00018 Score=52.49 Aligned_cols=135 Identities=12% Similarity=0.006 Sum_probs=80.8
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
.+..+..|++|+++||+++.|...+.+|+..--.+.++.-| .+....+...+|.. . .+.-++.+++++++|.|+
T Consensus 9 ~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g~~-~--~~~~~~~~v~p~~rIv~t 82 (149)
T COG3832 9 TLEIERLIDAPPEKVFEALTDPELLARWFMPGGAEFDARTG---GGERVRFRGPDGPV-H--SFEGEYLEVVPPERIVFT 82 (149)
T ss_pred eEEEEEeecCCHHHHHHHhcCHHHHHhhcCCCCCccceecC---CceEEeeecCCCCe-e--ecceEEEEEcCCcEEEEE
Confidence 57889999999999999999999898888510011112111 12333444434432 1 245566666788888888
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---H--HHHHHHHHHHHHHhhhh
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---K--ARDAALGFLKCFDKFQL 149 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~--~~~~~~~~~k~ie~~l~ 149 (151)
-.-.+....+..-..++++.|..+| + +++..........+... . ..+....++.+++++|.
T Consensus 83 w~~~~~~~~~~~~~v~~~l~~~~~g---~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 83 WDFDEDGEPFLKSLVTITLTPEDDG---G---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred eccCCCCCcccCceEEEEEEEecCC---C---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 7766543223456778888887664 2 22333333222211111 1 25667888888888874
No 43
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0013 Score=47.53 Aligned_cols=116 Identities=15% Similarity=0.270 Sum_probs=81.9
Q ss_pred CccEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCC-CCCeEEEEEecCCC-c-ceeeeEEEEEEE--EeC
Q 031888 1 MKKMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDG-SPGSLRLFKLGPAV-H-SYVKESIEKIEG--VET 75 (151)
Q Consensus 1 M~~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg-~~GsvR~~~~~~g~-~-~~~~~~kErl~~--~~~ 75 (151)
|+.+.....|+||.|-||+..+..++|..+-|..+ +-+-+|+. +.|+--...+.+-+ + .. .++-|+++ ++.
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrpd~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~--tW~Arhte~~~d~ 76 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRPDALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGL--TWVARHTESGFDN 76 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCccHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCc--eEEEEeeecccCC
Confidence 89999999999999999999999998877777533 33334532 33333222222211 1 12 37788887 478
Q ss_pred ccEEEEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 76 GRSVTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 76 ~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
..+++=.++.|+.+.. +..-+-++.+.++ +|++.=.+.|++..+.
T Consensus 77 ~~~FtDv~i~gPfp~~--~WrHtH~F~~egg----~TvliD~Vsye~p~g~ 121 (153)
T COG4276 77 GSRFTDVCITGPFPAL--NWRHTHNFVDEGG----GTVLIDSVSYELPAGT 121 (153)
T ss_pred cceeeeeeecCCccce--eeEEEeeeecCCC----cEEEEeeEEeeccCcc
Confidence 8889999999986533 4666777887655 8999999999987763
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.78 E-value=0.00085 Score=47.92 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=69.7
Q ss_pred EcCCHHHHHHHhhCCCccccc-CccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEEEeCCC
Q 031888 10 LNLPAEKAWEMYRNNEIISKI-NPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVVDGEL 88 (151)
Q Consensus 10 i~a~a~~vW~~~~d~~~l~~~-~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~iieg~~ 88 (151)
++||+++||+++.|.+.+.+| .+. ...+++ .+|..-++ ..+. +.=++.+++++++|.|+---.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~-~~~~d~-----~~GG~f~~--~~~~------~~G~~~ev~pp~rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGS-PAEMDA-----KVGGKFSL--FNGS------VEGEFTELEKPKKIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCC-CccccC-----CcCCEEEE--ecCc------eEEEEEEEcCCCEEEEEEecCCC
Confidence 479999999999999888877 432 112222 23333222 1232 23344555788888887643321
Q ss_pred C-CceeeEEEEEEEEecCCCCCCccEEEEEEE-EEeCCCCC--CChHHHHHHHHH-HHHHHHhhh
Q 031888 89 K-GMYDPYRVTFSFTPVEGKQDEMCIAEWAAE-FEPLTTST--PAPEKARDAALG-FLKCFDKFQ 148 (151)
Q Consensus 89 ~-~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~-~~~~~~~~--~~~~~~~~~~~~-~~k~ie~~l 148 (151)
. ..+ -..|+++.|.+++ +|.++-+-. +....... ...+...+-... ++..|++||
T Consensus 67 ~~~~~--s~vt~~~~~~~~g---~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 67 EEDVY--SKVTIEFRAVEED---HTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCc--eEEEEEEEeCCCC---cEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 1 112 3578889987554 798888877 43222111 123344455555 688888876
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.61 E-value=0.012 Score=45.32 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=76.2
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCC-CCCeEEEEEec-C--CC-cceeeeEEEEEEEE-eCcc
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDG-SPGSLRLFKLG-P--AV-HSYVKESIEKIEGV-ETGR 77 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg-~~GsvR~~~~~-~--g~-~~~~~~~kErl~~~-~~~~ 77 (151)
+..+.+|++|+++||+++.|....++|.+. ++++++++--+ .. .|-+..+. + .. ++.. ++..+.... +...
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~-~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RD-fV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPRTRFLYDTM-IKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRD-FCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcchhhhhHHh-hhheeeeeecCCCe-EEEEEEecCCCCCCCCCCe-EEEEEEEEECCCcE
Confidence 456778999999999999999988999995 88889886533 33 33333332 2 10 1111 333332222 2332
Q ss_pred EEEEEEEeC-CCC--C-c---eeeEEEEEEEEec---CCCCCCccEEEEEEEEEeCCCCCCC
Q 031888 78 SVTYLVVDG-ELK--G-M---YDPYRVTFSFTPV---EGKQDEMCIAEWAAEFEPLTTSTPA 129 (151)
Q Consensus 78 ~~~y~iieg-~~~--~-~---~~~y~~t~~v~p~---~~g~~~~s~v~W~~~~~~~~~~~~~ 129 (151)
.+.-+-+.- .++ . . ...+.+-+.+.|. +++ .|.|++.+..+|.+++.|.
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~---~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQ---YTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCC---cEEEEEEEEECCCCCCCCH
Confidence 332222322 222 1 1 4678889999998 554 8999999999999776654
No 46
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.53 E-value=0.023 Score=44.77 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=90.7
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCC-CCCCeEEEEEecCC--CcceeeeEEEEEEEE--eCc-
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGD-GSPGSLRLFKLGPA--VHSYVKESIEKIEGV--ETG- 76 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGd-g~~GsvR~~~~~~g--~~~~~~~~kErl~~~--~~~- 76 (151)
.+..+..+++|++++++++.|...-++|.++ ..++++++-- ...+-++ +.+..- .++.. ++..+-... +..
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RD-fV~~~s~~~~~~~~~ 154 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPND-FVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCce-EEEEEEEEeccCCCC
Confidence 3567888999999999999999988999996 7788887632 2333333 333221 11111 222222211 121
Q ss_pred -cEEEEEEEe-CCCC--C---ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC--CCChHHHHHHHHHHHHHHHhh
Q 031888 77 -RSVTYLVVD-GELK--G---MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS--TPAPEKARDAALGFLKCFDKF 147 (151)
Q Consensus 77 -~~~~y~iie-g~~~--~---~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~k~ie~~ 147 (151)
..+..+-+. ...| . ....+.+-+.+.|.+++ +|.|++.+..+|.--. .-+-.++-..+...|++-++|
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~---~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGT---CTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQF 231 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCC---cEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHH
Confidence 223333333 2222 1 15788999999999875 8999999999987543 122346667778889999999
Q ss_pred hhc
Q 031888 148 QLS 150 (151)
Q Consensus 148 l~~ 150 (151)
|..
T Consensus 232 ~~~ 234 (235)
T cd08873 232 LVT 234 (235)
T ss_pred hcc
Confidence 863
No 47
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.29 E-value=0.035 Score=40.48 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=69.7
Q ss_pred CHHHHHHHhh-CCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEEEEeCCCCCc
Q 031888 13 PAEKAWEMYR-NNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYLVVDGELKGM 91 (151)
Q Consensus 13 ~a~~vW~~~~-d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~iieg~~~~~ 91 (151)
..+++|..|- .-.+-..++|+ +.+|++++..++ -..|.++|+.+ .++|++.. .+..++.|.+-.++
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~------~v~e~vt~-~~~~~v~f~~~~~g---- 84 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPG-LDRCEVLSESGT-VLERELTFGPA------KIRETVTL-EPPSRVHFLQADAG---- 84 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccc-cceEEEEecCCC-EEEEEEEECCc------eEEEEEEe-cCCcEEEEEecCCC----
Confidence 4579999976 44455678886 899999976542 46799999764 38999885 58889999988722
Q ss_pred eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH--HHHHHHHHHHHH
Q 031888 92 YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE--KARDAALGFLKC 143 (151)
Q Consensus 92 ~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~k~ 143 (151)
+ +.++.+....+ | .+-.+..|+...++..+++ .+.+....+++.
T Consensus 85 -~--~l~~~iee~~~----g-~L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~ 130 (141)
T cd08863 85 -G--TLTNTIEEPED----G-ALYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE 130 (141)
T ss_pred -C--eEEEEeccCCC----C-cEEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence 1 12222332223 3 3556788887666543332 334444555444
No 48
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.02 E-value=0.049 Score=41.89 Aligned_cols=144 Identities=9% Similarity=0.061 Sum_probs=81.6
Q ss_pred EEEEEEEcCCHHHHH-HHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecC-CCcceee-eEEEEEEEE-eCccE
Q 031888 4 MKGQVVLNLPAEKAW-EMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGP-AVHSYVK-ESIEKIEGV-ETGRS 78 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW-~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~-g~~~~~~-~~kErl~~~-~~~~~ 78 (151)
+..+..+++|+++++ .++.|....++|.+. +.++++++- +...=.++.+.... +.....| ++.-+.... +.+..
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~ 129 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCV 129 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEE
Confidence 467889999999999 666688888999997 667676644 22111233322221 1111112 232222222 22222
Q ss_pred EEEEEEeCC-CC--C---ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhhhh
Q 031888 79 VTYLVVDGE-LK--G---MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKFQL 149 (151)
Q Consensus 79 ~~y~iieg~-~~--~---~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~l~ 149 (151)
+.....+-+ .+ . ....+.+-+.+.|.+++ ++.|.++|.+..+|++.-. ... .+.+.....++.|-+++.
T Consensus 130 ~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~-~~~t~v~~~~~~DpkG~iP-~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 130 LAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGD-PSKTKLTWLLSIDLKGWLP-KSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCC-CCceEEEEEEeecCCCCCC-HHHHHHHhHHhHHHHHHHHHHHHh
Confidence 111112222 11 1 14667788899998651 1389999999999998842 211 224555677777777765
Q ss_pred c
Q 031888 150 S 150 (151)
Q Consensus 150 ~ 150 (151)
+
T Consensus 208 ~ 208 (209)
T cd08905 208 S 208 (209)
T ss_pred c
Confidence 4
No 49
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.99 E-value=0.032 Score=41.01 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=43.5
Q ss_pred EEEEEEEcCC--------HHHHHHHhhCC-CcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEe
Q 031888 4 MKGQVVLNLP--------AEKAWEMYRNN-EIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVE 74 (151)
Q Consensus 4 ~~~~~~i~a~--------a~~vW~~~~d~-~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~ 74 (151)
+++.+.||-| .++||+.|..- .+-..++|+ +.+|++++.. +.+-.|.++| |+. .++|++...
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~-~~~~~R~v~f--g~~----~v~E~v~~~- 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVPG-IDSCEVLSES-DTVLTREVTF--GGA----TVRERVTLY- 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-TT---EEEEEEE--SSEEEEEEEE--TTE----EEEEEEEEE-
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCccc-cCeEEEEecC-CCeEEEEEEE--CCc----EEEEEEEEe-
Confidence 4455555544 46899998753 345678895 8999998654 3467999999 222 499998864
Q ss_pred CccEEEE
Q 031888 75 TGRSVTY 81 (151)
Q Consensus 75 ~~~~~~y 81 (151)
+..++.|
T Consensus 73 ~~~~V~f 79 (149)
T PF08982_consen 73 PPERVDF 79 (149)
T ss_dssp TTTEEEE
T ss_pred CCcEEEE
Confidence 7788888
No 50
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.93 E-value=0.093 Score=38.45 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=71.3
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceee-eEEEEEEEEeCccEEEE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVK-ESIEKIEGVETGRSVTY 81 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~-~~kErl~~~~~~~~~~y 81 (151)
.+..+..++++++++|+++.|....++|.|. +.++++++.....-.+.+..+....+...| ++--+-........+..
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~ 118 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLMDIDLRKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVI 118 (193)
T ss_pred eEEEEEEECCCHHHHHHHHhCCchhhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEE
Confidence 4567889999999999999998777999996 777787765432234555555433221111 22222121222222222
Q ss_pred EEEeCCC---C---Cce--eeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 82 LVVDGEL---K---GMY--DPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 82 ~iieg~~---~---~~~--~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
....-+. + ... ..+.+-+.+.|.+++ +|.+++.+..+|.+..
T Consensus 119 ~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~---~~~vt~~~~~D~~g~i 168 (193)
T cd00177 119 VSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG---KTKVTYVLQVDPKGSI 168 (193)
T ss_pred EEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC---CEEEEEEEeeCCCCCc
Confidence 2222221 1 112 233566788898664 8999999999999753
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.74 E-value=0.19 Score=39.66 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=71.8
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecCCCccee-eeEEEEEEE-E-eCcc-
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGPAVHSYV-KESIEKIEG-V-ETGR- 77 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~g~~~~~-~~~kErl~~-~-~~~~- 77 (151)
.+..+..+++|++++++++.|....++|.++ +.++++++- +... .+.++...+-..+.+ |.+.-+..- . .++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~ 159 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGD 159 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCc
Confidence 4567889999999999999999999999997 778888754 3232 255555433211111 222222111 1 1222
Q ss_pred E--EEEEEE-eCCCC--Cc---eeeEEEEEEEEecCCCCCCccEEEEEEEEEeC
Q 031888 78 S--VTYLVV-DGELK--GM---YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPL 123 (151)
Q Consensus 78 ~--~~y~ii-eg~~~--~~---~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~ 123 (151)
. +....+ .-+.+ .. ..++.+-+.+.|.+++ +|.+++...-+|.
T Consensus 160 ~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~---~t~vtY~~~~dPG 210 (240)
T cd08913 160 PYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQ---LTKVSYYNQATPG 210 (240)
T ss_pred cEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCC---cEEEEEEEEeCCc
Confidence 1 222223 22332 11 4678899999998775 8999998877763
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.58 E-value=0.23 Score=38.20 Aligned_cols=141 Identities=12% Similarity=0.038 Sum_probs=76.9
Q ss_pred EEEEEEEcCCHHHHH-HHhhCCCcccccCccccceEEEEcCCC-CCCeEEEEEecCC-Ccceee-eEEEEEEEEeCcc--
Q 031888 4 MKGQVVLNLPAEKAW-EMYRNNEIISKINPEMLAHAEYIQGDG-SPGSLRLFKLGPA-VHSYVK-ESIEKIEGVETGR-- 77 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW-~~~~d~~~l~~~~P~~v~s~~~~eGdg-~~GsvR~~~~~~g-~~~~~~-~~kErl~~~~~~~-- 77 (151)
+..+..+++|++++| +++.|....++|.+. +.++++++--+ ..=-++.+..... ++...| ++..|-..-+.+.
T Consensus 51 fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i 129 (209)
T cd08906 51 FILKAFMQCPAELVYQEVILQPEKMVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYV 129 (209)
T ss_pred EEEEEEEcCCHHHHHHHHHhChhhccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCcEE
Confidence 567889999999998 578999999999997 77777765422 1111223333221 121112 3333322222222
Q ss_pred EEEEEEEeCCCC--Cce---eeEEEEEEEEe--cCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhh
Q 031888 78 SVTYLVVDGELK--GMY---DPYRVTFSFTP--VEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKF 147 (151)
Q Consensus 78 ~~~y~iieg~~~--~~~---~~y~~t~~v~p--~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~ 147 (151)
.+..++.-...+ ..| .++.+-+-+.| .+. ++|.++|.+..+|++.- |... .+.+.....+++|-++
T Consensus 130 ~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~---~~t~vt~~~~~Dp~G~l-P~~lvN~~~~~~~~~~~~~LR~~ 205 (209)
T cd08906 130 SAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNP---SVCTFIWILNTDLKGRL-PRYLIHQSLAATMFEFASHLRQR 205 (209)
T ss_pred EEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCC---CceEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322222 112 22233344454 334 48999999999999853 2211 2245556677777766
Q ss_pred hh
Q 031888 148 QL 149 (151)
Q Consensus 148 l~ 149 (151)
+-
T Consensus 206 ~~ 207 (209)
T cd08906 206 IR 207 (209)
T ss_pred Hh
Confidence 54
No 53
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.53 E-value=0.25 Score=38.04 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=77.5
Q ss_pred EEEEEEE-cCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceee-eEEEEEEEEeCccEE--
Q 031888 4 MKGQVVL-NLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVK-ESIEKIEGVETGRSV-- 79 (151)
Q Consensus 4 ~~~~~~i-~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~-~~kErl~~~~~~~~~-- 79 (151)
+..+..+ ++|++.+++++.|....++|.|. +..+++++.-+.--.|.+..+...-+...| ++--|....+++..+
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~ 127 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLHDPEYRKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIF 127 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHHChhhhhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEE
Confidence 4455665 79999999999998777999997 555566544221123444444321111112 222222211222211
Q ss_pred EEEEEeCCCC--Cc---eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhhhhcC
Q 031888 80 TYLVVDGELK--GM---YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKFQLSY 151 (151)
Q Consensus 80 ~y~iieg~~~--~~---~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~l~~~ 151 (151)
..++.-...+ .. ...+.+-+.+.|.+++ +|.++|.+..+|.+.- |.-- ........++++|.+.+.+|
T Consensus 128 ~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~---~t~vt~~~~~Dp~G~I-P~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 128 NHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK---GCTLTYVTQNDPKGSL-PKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred eccccCCCCCCCCCeEEeEEEccEEEEEECCCC---CEEEEEEEecCCCCCc-CHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1122111122 11 2356677889998764 8999999999998863 2111 11333456666666666543
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.44 E-value=0.23 Score=38.04 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=82.8
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCccee-eeEE---EEEEEEeCccE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYV-KESI---EKIEGVETGRS 78 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~-~~~k---Erl~~~~~~~~ 78 (151)
.+..+..|++|++.+.+++.|.+..++|.|...++ +.++..+..-.+-.+.+..- -+.+ |.+. ..++.++++..
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~-~~l~~~~~~~~v~y~~~~~P-wPv~~RD~v~~~~~~~~~~~~~~ 124 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRS-KKVKQLGRADKVCYLRVDLP-WPLSNREAVFRGFGVDRLEENGQ 124 (215)
T ss_pred EEEEEEEecCChhHeEEEEehhhhHhhhcccceee-EEEeecCCceEEEEEEEeCc-eEecceEEEEEEEEEeeeccCCC
Confidence 45678899999999999999997779999975554 44433221122333333211 0011 1111 11121224444
Q ss_pred EEEEEEeCC------------CC--C-c---eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHH
Q 031888 79 VTYLVVDGE------------LK--G-M---YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAA 137 (151)
Q Consensus 79 ~~y~iieg~------------~~--~-~---~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~ 137 (151)
+....-.-+ ++ . . ...+.+-+.++|.+++ +|.+++.+..+|.+...|.-. ..++..
T Consensus 125 i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~---~t~v~~~~~~DP~g~~IP~~liN~~~k~~~ 201 (215)
T cd08877 125 IVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPT---KCYLRFVANVDPKMSLVPKSLLNFVARKFA 201 (215)
T ss_pred EEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCC---CeEEEEEEEcCCCcccCCHHHHHHHHHHHH
Confidence 332222111 12 1 1 3677888999999875 899999999999887443322 336666
Q ss_pred HHHHHHHHhhh
Q 031888 138 LGFLKCFDKFQ 148 (151)
Q Consensus 138 ~~~~k~ie~~l 148 (151)
..+|++|.+.+
T Consensus 202 ~~~~~~l~k~~ 212 (215)
T cd08877 202 GLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHH
Confidence 78888877654
No 55
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.40 E-value=0.35 Score=38.19 Aligned_cols=139 Identities=7% Similarity=-0.024 Sum_probs=79.5
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecCC--CcceeeeEEEEEEEE-e-Ccc
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGPA--VHSYVKESIEKIEGV-E-TGR 77 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~g--~~~~~~~~kErl~~~-~-~~~ 77 (151)
.+..+..+++|++++++++.|....++|.++ ..++++++- +..- -|.++.-.+= .+... ++..+-... . .+.
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~-~~e~~vI~qld~~~-~vY~~~~pPw~Pvk~RD-~V~~~s~~~~~~dg~ 155 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH-FLSCEVIDWVSEDD-QIYHITCPIVNNDKPKD-LVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh-hceEEEEEEeCCCc-CEEEEecCCCCCCCCce-EEEEEEEEecCCCCC
Confidence 4677889999999999999999999999997 667787754 2222 2667654331 22211 222221111 2 222
Q ss_pred EEE---EEEEeCCCC--Cc---eee-EEEEEEEEecCCCCCCccEEEEEEEEEeCCCCC---CChHHHHHHHHHHHHHHH
Q 031888 78 SVT---YLVVDGELK--GM---YDP-YRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTST---PAPEKARDAALGFLKCFD 145 (151)
Q Consensus 78 ~~~---y~iieg~~~--~~---~~~-y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~k~ie 145 (151)
.+. .++-.-.+| .. ... ..+- .+.|.+++ +|.|++.+..+| +-.. .+-.+....+...|+.-.
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~---~~~VtY~~~~dP-g~lp~~~~n~~~~~~~~~~~~~~~~ 230 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSN---SCTVSYFNQISA-SILPYFAGNLGGWSKSIEETAASCI 230 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCC---cEEEEEEEEcCC-ccchheEEecchhhhHHHHHHHHHH
Confidence 232 222221222 11 355 3444 88898774 899999999999 2211 112233444555555555
Q ss_pred hhhh
Q 031888 146 KFQL 149 (151)
Q Consensus 146 ~~l~ 149 (151)
+||.
T Consensus 231 ~~~~ 234 (236)
T cd08914 231 QFLE 234 (236)
T ss_pred HHHh
Confidence 5554
No 56
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.16 E-value=0.4 Score=36.52 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=81.0
Q ss_pred EEEEEEEcCCHHHHHH-HhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecCCCccee-e-eEEEEEEEEeCc-cE
Q 031888 4 MKGQVVLNLPAEKAWE-MYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGPAVHSYV-K-ESIEKIEGVETG-RS 78 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~-~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~g~~~~~-~-~~kErl~~~~~~-~~ 78 (151)
+..+..+++|+++|++ ++.|.+..++|.+. +.++++++. |+..--+..+...+++.+.+ | ++--|-...+.+ ..
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~ 128 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYL 128 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeEE
Confidence 4567889999999986 56688888999997 556666544 32221222222222211111 2 222222222222 22
Q ss_pred EEEEEEeCC-CC--Cc---eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCC--hHHHHHHHHHHHHHHHhhhhc
Q 031888 79 VTYLVVDGE-LK--GM---YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPA--PEKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 79 ~~y~iieg~-~~--~~---~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~k~ie~~l~~ 150 (151)
+...-++=+ .+ .. ...+.+.+.+.|.+++ +++|.++|.+..+|++.-..- ..........++++|.+++.+
T Consensus 129 i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~-~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 129 SSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNN-PNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEeccCCCCCCCCCeEEEeccccEEEEEECCCC-CCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 222222211 11 11 3556788889997642 148999999999999764211 112245556788888877753
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.86 E-value=0.58 Score=35.87 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=74.1
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCc-c-cccCccccceEEEEcC-CCCCCeEEEEEec-CCCccee-e-eEEEEEEEEeCcc
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEI-I-SKINPEMLAHAEYIQG-DGSPGSLRLFKLG-PAVHSYV-K-ESIEKIEGVETGR 77 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~-l-~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~-~g~~~~~-~-~~kErl~~~~~~~ 77 (151)
+..+..++++++++++.+.|..+ . ++|.+. +.++++++- |+...-++. ... ++....+ | ++--+-.....+-
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 56788999999999999987754 3 899996 777788755 333222332 222 1111111 2 2222222222222
Q ss_pred EEE--EEEEeCCC-C---Cceee----EEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHH
Q 031888 78 SVT--YLVVDGEL-K---GMYDP----YRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCF 144 (151)
Q Consensus 78 ~~~--y~iieg~~-~---~~~~~----y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~i 144 (151)
.+. +...+-+. + ..++. ..+.++..|.++ ++|.++|.+..+|++.- |... ...+....+++.+
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~---~~t~v~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~L 201 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEP---DKTQLVSFFQTDLSGYL-PQTVVDSFFPASMAEFYNNL 201 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCC---CceEEEEEEEeccCCCc-CHHHHHHHhhHHHHHHHHHH
Confidence 333 32333321 2 11222 233444444444 48999999999998664 2211 1134445666776
Q ss_pred Hhhh
Q 031888 145 DKFQ 148 (151)
Q Consensus 145 e~~l 148 (151)
.+++
T Consensus 202 r~~~ 205 (208)
T cd08903 202 TKAV 205 (208)
T ss_pred HHHH
Confidence 6665
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.60 E-value=0.73 Score=35.19 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=81.4
Q ss_pred cEEEEEEE-cCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCC-eEEEEEecCCCcceeeeEEEEEEEE-eCccEE
Q 031888 3 KMKGQVVL-NLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPG-SLRLFKLGPAVHSYVKESIEKIEGV-ETGRSV 79 (151)
Q Consensus 3 ~~~~~~~i-~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~G-svR~~~~~~g~~~~~~~~kErl~~~-~~~~~~ 79 (151)
.+....++ ++|++.+.+++.|....++|.+. +.+.++++-+...| .|-++.+..--+...|.+.-+.... +.+..+
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~ 129 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSY 129 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEE
Confidence 35566677 67999999999998878999997 55556665443212 1222222111111112122221222 212222
Q ss_pred --EEEEEeC-CCCC----ceeeEEEEEEEEec--CCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhh
Q 031888 80 --TYLVVDG-ELKG----MYDPYRVTFSFTPV--EGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKF 147 (151)
Q Consensus 80 --~y~iieg-~~~~----~~~~y~~t~~v~p~--~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~ 147 (151)
...-+.- ..+. ....|.+.+.+.|. +++ +|.+.++..-+|.+. .|.-. ......-+++++|.+.
T Consensus 130 ~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~---~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 130 VCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQ---GSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCC---ceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222221 1121 26889999999998 453 788999988888554 22211 2255557888888888
Q ss_pred hhcC
Q 031888 148 QLSY 151 (151)
Q Consensus 148 l~~~ 151 (151)
+..|
T Consensus 206 ~~~Y 209 (209)
T cd08870 206 LRKY 209 (209)
T ss_pred HhcC
Confidence 7765
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.41 E-value=0.87 Score=34.83 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=81.6
Q ss_pred EEEEEEE-cCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCC-eEEEEEecCCCcceee-eEEEEEEEE-eCccE-
Q 031888 4 MKGQVVL-NLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPG-SLRLFKLGPAVHSYVK-ESIEKIEGV-ETGRS- 78 (151)
Q Consensus 4 ~~~~~~i-~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~G-svR~~~~~~g~~~~~~-~~kErl~~~-~~~~~- 78 (151)
+..+..+ ++|++.+.+++.|.+..++|.+. +.++++++.+...+ -|-.+.+..--+...| ++-.|-... ..+..
T Consensus 47 ~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~ 125 (207)
T cd08911 47 YKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLI 125 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEE
Confidence 4455555 99999999999999888999996 66677776532212 2233332211111111 233332223 23322
Q ss_pred -EEEEEEeC-CCC-----CceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH--HHHHHHHHHHHHHHhhhh
Q 031888 79 -VTYLVVDG-ELK-----GMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE--KARDAALGFLKCFDKFQL 149 (151)
Q Consensus 79 -~~y~iieg-~~~-----~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~k~ie~~l~ 149 (151)
+...-++- ..+ ....+|.+.+.+.|.+....++|.+.++..-+|.+.-...-. ......-+++++|.+.++
T Consensus 126 ~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 126 VIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred EEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 12112221 111 126789999999997410014888887777666654311111 224555788888888887
Q ss_pred cC
Q 031888 150 SY 151 (151)
Q Consensus 150 ~~ 151 (151)
.|
T Consensus 206 ~y 207 (207)
T cd08911 206 KY 207 (207)
T ss_pred cC
Confidence 65
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=95.41 E-value=0.85 Score=34.63 Aligned_cols=116 Identities=7% Similarity=0.027 Sum_probs=67.8
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecCCCcceee-eEEEEEEEE-eCc--cE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGPAVHSYVK-ESIEKIEGV-ETG--RS 78 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~g~~~~~~-~~kErl~~~-~~~--~~ 78 (151)
+..+..|++++++|++.+-|.. ++|.+. +.++++++- +... .|-+..+..-.+...| ++--|.... .++ ..
T Consensus 46 ~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~-~~~~~vie~id~~~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~ 121 (197)
T cd08869 46 WRASTEVEAPPEEVLQRILRER--HLWDDD-LLQWKVVETLDEDT-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACV 121 (197)
T ss_pred EEEEEEeCCCHHHHHHHHHHHH--hccchh-hheEEEEEEecCCc-EEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEE
Confidence 4778899999999999887653 899997 666677644 2211 2223322221111112 333333322 222 22
Q ss_pred EEEEEEeC--CCC-Cc--eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 79 VTYLVVDG--ELK-GM--YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 79 ~~y~iieg--~~~-~~--~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
+..+=++- ..+ .. ...+.+-+.++|.+++ +|.|+|.+..+|.+.-
T Consensus 122 i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~---~t~vty~~~~Dp~G~i 171 (197)
T cd08869 122 LVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSG---KSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCC---CeEEEEEEEECCCCCC
Confidence 22222321 111 22 3566788899998764 8999999999998764
No 61
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=94.19 E-value=0.23 Score=38.50 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=69.0
Q ss_pred EEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEE---EeCccEEEEEE
Q 031888 7 QVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEG---VETGRSVTYLV 83 (151)
Q Consensus 7 ~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~---~~~~~~~~y~i 83 (151)
...+..+++.+++++++.++..+++|= -++.++..-+.+-+.+-.+.. |=++ +-|+-+. .+..+...-..
T Consensus 73 rrligysp~~my~vVS~V~~Y~~FVPw-C~kS~V~~~~P~~~~kA~LeV--GFk~----l~E~y~S~Vt~~~p~l~kt~~ 145 (227)
T KOG3177|consen 73 RRLIGYSPSEMYSVVSNVSEYHEFVPW-CKKSDVTSRRPSGPLKADLEV--GFKP----LDERYTSNVTCVKPHLTKTVC 145 (227)
T ss_pred HhhhCCCHHHHHHHHHhHHHhhccccc-eeccceeecCCCCCceeeEEe--cCcc----cchhheeeeEEecccceEEee
Confidence 345789999999999999888889994 445455543311133434433 2222 2333222 23444444444
Q ss_pred EeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 84 VDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 84 ieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
-+|.+ |......|++.|+. +.++.|.+...+.|+-.-.
T Consensus 146 ~d~rL---F~~L~t~Wsf~pg~-~~p~tc~ldf~v~FeF~S~ 183 (227)
T KOG3177|consen 146 ADGRL---FNHLITIWSFKPGP-NIPRTCTLDFSVSFEFKSL 183 (227)
T ss_pred ccccH---HHhhhheeeeccCC-CCCCeEEEEEEEEEEehhH
Confidence 55543 88899999999988 3446999999999987643
No 62
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=92.92 E-value=3.3 Score=31.67 Aligned_cols=143 Identities=14% Similarity=0.033 Sum_probs=79.9
Q ss_pred cEEEEEEEc-CCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceee-eEEE-EEEEE-eCccE
Q 031888 3 KMKGQVVLN-LPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVK-ESIE-KIEGV-ETGRS 78 (151)
Q Consensus 3 ~~~~~~~i~-a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~-~~kE-rl~~~-~~~~~ 78 (151)
.+.....+. ++++.+.+++.|.+..++|.+.+.+ +.-.+.++ -.|-.+.+..--+...| ++-- +...+ .....
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~-~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~ 126 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE-LYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRK 126 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh-heeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCCe
Confidence 345667787 7999999999999888999997554 32112222 12334433211111111 2211 11222 22322
Q ss_pred EEE---EEEeCC-CC---C--ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCCh--HHHHHHHHHHHHHHHhh
Q 031888 79 VTY---LVVDGE-LK---G--MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAP--EKARDAALGFLKCFDKF 147 (151)
Q Consensus 79 ~~y---~iieg~-~~---~--~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~k~ie~~ 147 (151)
+.. ...+=+ .+ . ....|.+.+.+.|.+++ +|.+++....+|.+.-..-- .........++++|.+.
T Consensus 127 ~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~---~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 127 IWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK---GSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred EEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC---ceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHH
Confidence 211 111111 12 1 25789999999998764 89999999999866532101 12255557888888887
Q ss_pred hhcC
Q 031888 148 QLSY 151 (151)
Q Consensus 148 l~~~ 151 (151)
+..|
T Consensus 204 ~~~y 207 (207)
T cd08910 204 CQNY 207 (207)
T ss_pred HhcC
Confidence 7655
No 63
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=92.65 E-value=3 Score=30.48 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred EEEEEEEcCCHHHHHHHhhCCC---cccccCcc---ccceEEEEcCCCCCCeEEEEE-ecC-CCcce-eee------EE-
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNE---IISKINPE---MLAHAEYIQGDGSPGSLRLFK-LGP-AVHSY-VKE------SI- 67 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~---~l~~~~P~---~v~s~~~~eGdg~~GsvR~~~-~~~-g~~~~-~~~------~k- 67 (151)
++.+..+++|+|+||+++.|-. ..-+.+.. -+.+++. +|+| -+++... +.. ..|.. .|+ ++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~ 77 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTR 77 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEE
Confidence 4678899999999999999843 12222222 1333322 2332 1122111 111 11111 011 22
Q ss_pred -EEEEEE-eCccEEEEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 68 -EKIEGV-ETGRSVTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 68 -Erl~~~-~~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
|+-.-. +..++.+|++--.+.+ -+..+++.+.|.++ +|.+.++.+++..-+.
T Consensus 78 ~e~w~~~~~g~~~g~~~~~~~G~P---~~~~G~~~L~~~~~----gt~~~~~g~v~v~VPl 131 (159)
T PF10698_consen 78 TETWTPLDDGRRTGTFTVSIPGAP---VSISGTMRLRPDGG----GTRLTVEGEVKVKVPL 131 (159)
T ss_pred EEEEecCCCCeEEEEEEEEecCce---EEEEEEEEEecCCC----CEEEEEEEEEEEEEcc
Confidence 222122 3455556655443333 56899999999544 8999999999976554
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=92.61 E-value=4.1 Score=31.95 Aligned_cols=141 Identities=10% Similarity=0.108 Sum_probs=76.6
Q ss_pred cEEEEEEEc-CCHHHHHHHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecCCCccee-e-eE-EEEEEEEeCc-
Q 031888 3 KMKGQVVLN-LPAEKAWEMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGPAVHSYV-K-ES-IEKIEGVETG- 76 (151)
Q Consensus 3 ~~~~~~~i~-a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~g~~~~~-~-~~-kErl~~~~~~- 76 (151)
.+.....+. ++++.+.+.+.|.+...+|... +.+.++++- +... .|-+..+.. .-+.+ | ++ .-++...+++
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~-~~~~~vie~l~~~~-~I~Y~~~k~-PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDVRMDWETT-LENFHVVETLSQDT-LIFHQTHKR-VWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhhHHHHHhh-hheeEEEEecCCCC-EEEEEEccC-CCCCCCcEEEEEEEEEecCccc
Confidence 356777777 9999999999999888999986 777776644 2211 222222221 10111 1 11 1111222221
Q ss_pred --------cEEEEEEEeCCCCCceeeEEEE-----------------EEEEecCCCCCCccEEEEEEEEEeCCCCCCCh-
Q 031888 77 --------RSVTYLVVDGELKGMYDPYRVT-----------------FSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAP- 130 (151)
Q Consensus 77 --------~~~~y~iieg~~~~~~~~y~~t-----------------~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~- 130 (151)
-.+..++.-...+..-...++. ++++| +++ +|.+++.+..+|.+.....-
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~---~~~ity~~~~dPgG~iP~wvv 205 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNI---LCKITYVANVNPGGWAPASVL 205 (235)
T ss_pred cccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCC---eEEEEEEEEeCCCCCccHHHH
Confidence 2233333333322111111222 23444 343 89999999999988752111
Q ss_pred -HHHHHHHHHHHHHHHhhhhc
Q 031888 131 -EKARDAALGFLKCFDKFQLS 150 (151)
Q Consensus 131 -~~~~~~~~~~~k~ie~~l~~ 150 (151)
...+..+-++++++-+|++.
T Consensus 206 n~~~k~~~P~~l~~~~~~~~~ 226 (235)
T cd08872 206 RAVYKREYPKFLKRFTSYVQE 226 (235)
T ss_pred HHHHHhhchHHHHHHHHHHHH
Confidence 12355668899999999864
No 65
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=92.57 E-value=3.4 Score=30.88 Aligned_cols=120 Identities=8% Similarity=0.034 Sum_probs=70.3
Q ss_pred cEEEEEEEcCCHHHHH-HHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCC-cceee-eEEEE-EEEE-eCcc
Q 031888 3 KMKGQVVLNLPAEKAW-EMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV-HSYVK-ESIEK-IEGV-ETGR 77 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW-~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~-~~~~~-~~kEr-l~~~-~~~~ 77 (151)
.+..+..+.++++++. +++.|....++|.+. +.++++++--..-..|.+.....-- +...| ++--| .... +...
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~ 124 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDLRYRPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSY 124 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhcccchhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcE
Confidence 3566778999998755 577788888999997 6666776542211355555443221 21112 22222 1112 2222
Q ss_pred EEEEEEEeCCC-C---Cc--eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 78 SVTYLVVDGEL-K---GM--YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 78 ~~~y~iieg~~-~---~~--~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
.+..+-++.+. + .. ...+.+-+.+.|.+++ .|.++|....+|.+.-
T Consensus 125 vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~---~t~vt~~~~~D~~G~i 176 (206)
T smart00234 125 AVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG---PSKVTWVSHADLKGWL 176 (206)
T ss_pred EEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC---CeEEEEEEEEecCCCc
Confidence 33332222221 1 11 3567888999998875 7999999999999864
No 66
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=89.88 E-value=7.6 Score=29.98 Aligned_cols=121 Identities=8% Similarity=-0.032 Sum_probs=70.8
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeE-EEEEecCCCccee-e-eE-EEEEEEE-eCccE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSL-RLFKLGPAVHSYV-K-ES-IEKIEGV-ETGRS 78 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~Gsv-R~~~~~~g~~~~~-~-~~-kErl~~~-~~~~~ 78 (151)
...+..|+..++++|+.+.+.....+|-|. ++++++++-=+.-=.| |.++....+...+ | ++ .-++... +--.+
T Consensus 49 ~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~-v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s 127 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIRPGPYRLDWDSL-MTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLLS 127 (202)
T ss_pred EEEEEEecCCHHHHHHHHhcccchhcccch-hhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeEE
Confidence 356778889999999999987666899996 9999998752110133 4555443332222 2 22 2222223 33233
Q ss_pred EEEEEEeCCCC-Cce--eeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 79 VTYLVVDGELK-GMY--DPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 79 ~~y~iieg~~~-~~~--~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
.+-++.-...+ ..+ .++-+-+-+.|.+++ ++.|.++|-+..++++..
T Consensus 128 ~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~-p~k~~~t~~lq~DLkG~L 177 (202)
T cd08902 128 CGVSIEYEEARPNFVRGFNHPCGWFCVPLKDN-PSHSLLTGYIQTDLRGML 177 (202)
T ss_pred EEeeecCCCCCCCeEeecccccEEEEEECCCC-CCceEEEEEEEecCCCCc
Confidence 33333332222 112 333445567787653 368999999999998663
No 67
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=88.95 E-value=8.3 Score=29.14 Aligned_cols=142 Identities=11% Similarity=-0.013 Sum_probs=75.3
Q ss_pred EEEEEEEcCCHHHHHHHhhC--CCcccccCccccceEEEEcCCCCCCeEEEEEecC-CCccee-e-eE-EEEEEEEeCc-
Q 031888 4 MKGQVVLNLPAEKAWEMYRN--NEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGP-AVHSYV-K-ES-IEKIEGVETG- 76 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d--~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~-g~~~~~-~-~~-kErl~~~~~~- 76 (151)
+..+..|+++++++.+.+.| ....++|.+. +.++++++.-+..=.|-+..+.. +....+ | ++ .+....++.+
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~ 126 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGLRLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQ 126 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCcccccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCe
Confidence 57788999999999999998 5566899986 77778876532111222222221 111111 2 22 1211222222
Q ss_pred cEEEEEEEeCCC-C--Cc---eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChH---HHHHHHHHHHHHHHhh
Q 031888 77 RSVTYLVVDGEL-K--GM---YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPE---KARDAALGFLKCFDKF 147 (151)
Q Consensus 77 ~~~~y~iieg~~-~--~~---~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~ 147 (151)
..+...-++=+. + .. -..+.+-+-+.|.+++ +++|.++|.+..+|.+.-. .-. ...+.....+++|-+|
T Consensus 127 ~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~-~~~t~~~~~~~~DpkG~iP-~~lvn~~~~~~~~~~~~~lr~~ 204 (206)
T cd08867 127 WSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGS-PDKSFLVLYVQTDLRGMIP-QSLVESAMPSNLVNFYTDLVKG 204 (206)
T ss_pred EEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCC-CCceEEEEEEEeccCCCCc-HHHHHhhhhhhHHHHHHHHHHh
Confidence 122222222121 1 11 1334455566775421 1479999999999997642 111 1234446667777666
Q ss_pred h
Q 031888 148 Q 148 (151)
Q Consensus 148 l 148 (151)
+
T Consensus 205 ~ 205 (206)
T cd08867 205 V 205 (206)
T ss_pred c
Confidence 4
No 68
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=87.63 E-value=11 Score=29.00 Aligned_cols=116 Identities=6% Similarity=0.008 Sum_probs=67.4
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEec-CC-CcceeeeEEEEEEEE-eCccE
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLG-PA-VHSYVKESIEKIEGV-ETGRS 78 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~-~g-~~~~~~~~kErl~~~-~~~~~ 78 (151)
.+..+.+|+++++++.+.+-|- .++|.+.+.+ .++++- +... -|-+..+. +- .+... ++..|.-.. ..+..
T Consensus 53 ~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e-~~vIe~ld~~~-~I~Yy~~~~PwP~~~RD-~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 53 LWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLD-SKVIEILDSQT-EIYQYVQNSMAPHPARD-YVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhh-eEeeEecCCCc-eEEEEEccCCCCCCCcE-EEEEEEEEEeCCCCe
Confidence 4678899999999999998766 5789997554 455443 3211 12222211 11 11111 333333322 23332
Q ss_pred EEEEEEeCC---CC-C--ceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 79 VTYLVVDGE---LK-G--MYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 79 ~~y~iieg~---~~-~--~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
+........ .+ . ....+.+-+.++|.++| +|.|++.+..+|.+..
T Consensus 128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g---~t~vtyi~~~DPgG~i 178 (204)
T cd08908 128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSG---KSKLTYMCRIDLRGHM 178 (204)
T ss_pred EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCC---cEEEEEEEEeCCCCCC
Confidence 322222122 22 1 14567888899998875 8999999999998874
No 69
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=87.30 E-value=8 Score=27.04 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=64.4
Q ss_pred EEEEEEcCCHHHHHHHhhCCC--cccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccEEEEE
Q 031888 5 KGQVVLNLPAEKAWEMYRNNE--IISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRSVTYL 82 (151)
Q Consensus 5 ~~~~~i~a~a~~vW~~~~d~~--~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~~~y~ 82 (151)
..+..+++||+.+++.+-+.- ++.+.-..-+..-+| +| .-=.=.+..+. ..+=+|+++.+++.|.+.
T Consensus 2 kI~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~~-----~~~v~It~~~~~~~Y~~~ 70 (120)
T PF11687_consen 2 KISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNKR-----EAKVKITEYEPNKRYAAT 70 (120)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCCC-----EEEEEEEEEcCCCEEEEE
Confidence 456789999999999987632 233322221111112 33 11111122332 255568878889999999
Q ss_pred EEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCC
Q 031888 83 VVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTT 125 (151)
Q Consensus 83 iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~ 125 (151)
+.... ..+..+-++.|.++| .|.|+.+=++++.+-
T Consensus 71 ~~s~~-----~~~~i~Y~i~~~~~~---~~~v~y~E~~~~~~~ 105 (120)
T PF11687_consen 71 FSSSR-----GTFTISYEIEPLDDG---SIEVTYEEEYESKGF 105 (120)
T ss_pred EEecC-----CCEEEEEEEEECCCC---cEEEEEEEEEccCCH
Confidence 88543 558888889999885 799998888876553
No 70
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=74.84 E-value=31 Score=25.45 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=70.9
Q ss_pred cEEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCC--cceee-eEEEEEEE-E-eCcc
Q 031888 3 KMKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAV--HSYVK-ESIEKIEG-V-ETGR 77 (151)
Q Consensus 3 ~~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~--~~~~~-~~kErl~~-~-~~~~ 77 (151)
.+.....++++++++...+.+-.. +|-+. +.++++++--..-..|.+..+.... +...| ++--|... . +...
T Consensus 47 ~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~ 123 (206)
T PF01852_consen 47 MFKAEGVVPASPEQVVEDLLDDRE--QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTY 123 (206)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGG--HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEE
T ss_pred EEEEEEEEcCChHHHHHHHHhhHh--hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceE
Confidence 356778899999988888776544 89986 6677777552111466666554322 22222 22222121 2 2333
Q ss_pred EEEEEEEeCC-CCC----c--eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 78 SVTYLVVDGE-LKG----M--YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 78 ~~~y~iieg~-~~~----~--~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
.+..+=++.+ .+. . -..+.+-+.+.|.+++ .|.|++....+|.+..
T Consensus 124 ~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~---~~~vt~~~~~D~~G~i 176 (206)
T PF01852_consen 124 VIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG---RTRVTYVSQVDPKGWI 176 (206)
T ss_dssp EEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC---EEEEEEEEEEESSSSS
T ss_pred EEEEeeeccccccccccCcceeeeeeEeEEEEEccCC---CceEEEEEEECCCCCC
Confidence 4444333332 221 1 3567788899999885 6999999999998864
No 71
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.93 E-value=33 Score=28.11 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=53.6
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcCCCCCCeEEEEEecCCCcceeeeEEEEEEEEeCccE--EEE
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQGDGSPGSLRLFKLGPAVHSYVKESIEKIEGVETGRS--VTY 81 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eGdg~~GsvR~~~~~~g~~~~~~~~kErl~~~~~~~~--~~y 81 (151)
++.+..++|+++.++++|.|...+..|.-. . -++..+.| |..-. -+|.. ..| +.++++++. ..|
T Consensus 175 i~l~~tfn~~~~eLy~~fld~~rv~~wt~S-~--a~l~~~~~--g~f~l---f~GnV-----tg~-~~~~e~~K~Iv~kW 240 (301)
T KOG2936|consen 175 ISLSATFNCRVDELYEIFLDPERVKAWTRS-P--AELEADPG--GKFSL---FDGNV-----TGE-FLELEKNKKIVMKW 240 (301)
T ss_pred ceehhhcCCCHHHHHHHHhcHHHHHHhcCC-h--hhcccCCC--CceEE---ecccc-----eee-eeeecCCCeEEEEE
Confidence 455668999999999999998877666631 1 12322222 33322 25552 333 333434444 455
Q ss_pred EEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEE
Q 031888 82 LVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAE 119 (151)
Q Consensus 82 ~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~ 119 (151)
++- +-+ ..+-||+++++...+ ..|.++....
T Consensus 241 rl~--~Wp---~~~~atI~~~f~~~~--~~t~l~~~~k 271 (301)
T KOG2936|consen 241 RLK--SWP---DGHDATITLTFYESQ--GETKLQVKQK 271 (301)
T ss_pred ecc--cCC---CCccceEEEEEecCC--CceEEEEEec
Confidence 554 332 447778888776542 2676665553
No 72
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=49.69 E-value=1.2e+02 Score=23.29 Aligned_cols=120 Identities=10% Similarity=-0.077 Sum_probs=66.5
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCcccccCccccceEEEEcC-CCCCCeEEEEEecC-CCccee-e-eEEEEEEE-E-eCcc
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEIISKINPEMLAHAEYIQG-DGSPGSLRLFKLGP-AVHSYV-K-ESIEKIEG-V-ETGR 77 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~-g~~~~~-~-~~kErl~~-~-~~~~ 77 (151)
...+..|+++++++|+.+.+.....+|-+. +.+++++|- |... .|-+....+ +....+ | ++--|--. + +...
T Consensus 48 ~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~-~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ 125 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMYQPEHRIKWDKS-LQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMN 125 (204)
T ss_pred EEEEEEecCCHHHHHHHHhccchhhhhccc-ccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCCCEE
Confidence 457789999999999999886666899995 777777754 3211 233333222 111111 1 22222111 2 2222
Q ss_pred EEEEEEEeCCC--C-Cc---eeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCC
Q 031888 78 SVTYLVVDGEL--K-GM---YDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTS 126 (151)
Q Consensus 78 ~~~y~iieg~~--~-~~---~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~ 126 (151)
.+.+.-++=+- + .. -.++.+=+-+.|.+++ +++|.++|-+..++++.-
T Consensus 126 ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~-p~~t~l~~~~~~DlkG~l 179 (204)
T cd08904 126 IVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPEN-PAYSKLVMFVQPELRGNL 179 (204)
T ss_pred EEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCC-CCceEEEEEEEeCCCCCC
Confidence 22233333222 1 11 1344455667887542 247999999999998664
No 73
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=28.64 E-value=2.3e+02 Score=20.53 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred CccEEEEEEEeCCCCCceeeEEEEEEEEecCCCCCCccEEEEEEEEEe
Q 031888 75 TGRSVTYLVVDGELKGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEP 122 (151)
Q Consensus 75 ~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~ 122 (151)
....+.|.+.-.-.+..+.++...+++.|.+.+ .|.+.|..-+.+
T Consensus 80 ~~~~~~~~iFPN~~i~~~~~~~~~~~~~P~~~~---~t~~~~~~~~~~ 124 (190)
T cd08885 80 RRRLVLFAIFPTHLLALTPDYVWWLSLLPEGAG---RVRVRWGVLVAP 124 (190)
T ss_pred hcceEEEEECCcEEEEecCCeEEEEEEEecCCC---eEEEEEEEEEcc
Confidence 345556666543333335667788999998774 899988765544
No 74
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=28.49 E-value=50 Score=19.04 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=10.0
Q ss_pred CeEEEEEecCCC
Q 031888 48 GSLRLFKLGPAV 59 (151)
Q Consensus 48 GsvR~~~~~~g~ 59 (151)
|++|.++|.++.
T Consensus 1 GAvR~~kFsP~~ 12 (43)
T PF10313_consen 1 GAVRCCKFSPEP 12 (43)
T ss_pred CCeEEEEeCCCC
Confidence 789999998654
No 75
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=24.37 E-value=2.9e+02 Score=20.27 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=38.1
Q ss_pred EEEEEeCCC--CCceeeEEEEEEEEecCCCCCCccEEEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 031888 80 TYLVVDGEL--KGMYDPYRVTFSFTPVEGKQDEMCIAEWAAEFEPLTTSTPAPEKARDAALGFLKCFDKF 147 (151)
Q Consensus 80 ~y~iieg~~--~~~~~~y~~t~~v~p~~~g~~~~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 147 (151)
.|+|-||.+ |+.+.+-+-.+=+.+..+ .+-+...+.=++..+...-++-+......+-|++.+|
T Consensus 3 ~Y~i~EG~l~lP~~w~DrSvNvf~~~~~g----t~~~sfvIsRd~~~~g~~~~~y~~rql~~l~k~Lpgy 68 (147)
T COG5435 3 TYQIQEGTLELPAAWQDRSVNVFVSGDNG----TSGFSFVISRDPLEPGDTFPEYVQRQLALLRKQLPGY 68 (147)
T ss_pred eeEeeeeeEcCcchhccceEEEEEecCCC----cceeEEEEecCCCCCCCcHHHHHHHHHHHHHhhCCCe
Confidence 589999986 456777776665555433 4556666666666555444444444444555555444
No 76
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=21.92 E-value=6.5e+02 Score=23.40 Aligned_cols=141 Identities=11% Similarity=0.058 Sum_probs=74.0
Q ss_pred EEEEEEEcCCHHHHHHHhhCCCc-ccccCccccceEEEEcC-CCCCCeEEEEEecCCC--ccee-e-eEEEEEEEEeCcc
Q 031888 4 MKGQVVLNLPAEKAWEMYRNNEI-ISKINPEMLAHAEYIQG-DGSPGSLRLFKLGPAV--HSYV-K-ESIEKIEGVETGR 77 (151)
Q Consensus 4 ~~~~~~i~a~a~~vW~~~~d~~~-l~~~~P~~v~s~~~~eG-dg~~GsvR~~~~~~g~--~~~~-~-~~kErl~~~~~~~ 77 (151)
+...-.|+++|++||+.+.+.+. -.+|=.. ++.++++|- |++. .|-.-++.++- ...+ | ++--|--...+..
T Consensus 229 mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~-~~~~~vIE~ID~ht-dI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 229 MKAVGVVEATCEEIFELVMSMDGTRFEWDCS-FQYGSLVEEVDGHT-AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred eEEEEEecCCHHHHHHHHhccCcccccchhc-ccceEEEEEecCCe-EEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 45677899999999999998774 3788874 778777755 4322 23322332111 0000 1 2222222222222
Q ss_pred --EEEEEEEeCC--CC-C-ce--eeEEEEEEEEecC-CCCCCccEEEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHh
Q 031888 78 --SVTYLVVDGE--LK-G-MY--DPYRVTFSFTPVE-GKQDEMCIAEWAAEFEPLTTST-PAPEKARDAALGFLKCFDK 146 (151)
Q Consensus 78 --~~~y~iieg~--~~-~-~~--~~y~~t~~v~p~~-~g~~~~s~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~k~ie~ 146 (151)
.+.|.=++=+ ++ . .+ ..+.+.+.+.|.. +.+..+|.|+|-+..+.++=.. --|...+.....|+..|.+
T Consensus 307 sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAg 385 (719)
T PLN00188 307 SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAG 385 (719)
T ss_pred cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHH
Confidence 2222222222 12 1 12 3445778888843 2112589999999999887331 1223334444555554443
Done!