BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031890
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
Length = 133
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 32/49 (65%)
Query: 61 TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKI 109
TLV +G+ +++A++ DT + + +G G ++ + +A++ I +++++
Sbjct: 52 TLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNEL 100
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 105 REDKIARQIDEYTRLIASIKAQIKLVCEGIC 135
R D + ++I Y +A++KA I +C G+
Sbjct: 130 RPDLVVQEISNYGAGLAALKAGIPTICHGVG 160
>pdb|4EJO|A Chain A, Crystal Structure Of Padr Family Transcriptional Regulator
From Eggerthella Lenta Dsm 2243
pdb|4EJO|B Chain B, Crystal Structure Of Padr Family Transcriptional Regulator
From Eggerthella Lenta Dsm 2243
Length = 123
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 108 KIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 143
K R DE R++ ++AQ ++C+G+ +LL+ E
Sbjct: 81 KYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGE 116
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
Length = 391
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 GLGFHVEFTWSEALKFISQREDKIARQIDEY 116
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 116 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 146
>pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With
Inhibitor
Length = 203
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 GLGFHVEFTWSEALKFISQREDKIARQIDEY 116
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 103 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 133
>pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B
In Complex With Small Molecule Inhibitor
pdb|4DUH|B Chain B, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B
In Complex With Small Molecule Inhibitor
Length = 220
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 GLGFHVEFTWSEALKFISQREDKIARQIDEY 116
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 147
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
Clorobiocin
Length = 205
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 GLGFHVEFTWSEALKFISQREDKIARQIDEY 116
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 103 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 133
>pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 215
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 GLGFHVEFTWSEALKFISQREDKIARQIDEY 116
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 104 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 134
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 61 TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 101
LV+LG E + VP + + +G+ F TW E +F
Sbjct: 68 ALVDLGEEFAGRGSVPILEKVSKGLGIAFSNAKTWKEMRRF 108
>pdb|4G9Q|A Chain A, Crystal Structure Of A 4-Carboxymuconolactone
Decarboxylase
Length = 269
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 18 RRLKPDLTRAIAERDKVFEQQKIFSDL--RKNIENLEKNSVT 57
RR PD R++A + + QQ+++ D+ R + +++ VT
Sbjct: 39 RRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVT 80
>pdb|2FC2|A Chain A, No-Heme Complex In A Bacterial Nitric Oxide Synthase. An
Fe(Iii)-No May Cause Nitrosation.
pdb|2FC2|B Chain B, No-Heme Complex In A Bacterial Nitric Oxide Synthase. An
Fe(Iii)-No May Cause Nitrosation
Length = 363
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 88 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 130
G H+E W+EA FI++ ++ ++ +E + SIK++I L
Sbjct: 1 GSHMEILWNEAKAFIAECYQELGKE-EEVKDRLDSIKSEIDLT 42
>pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 21 KPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQA-DVPDTQ 79
+PDL I + +QK+ I + + +L T+ N G++ +M+A
Sbjct: 59 EPDLFIRITPK----PEQKVLEIRDSGIGMTKAELINNLGTIANSGTKAFMEALSAGADV 114
Query: 80 HIFVDIGLGFHVEFTWSEALKFISQRED 107
+ G+GF+ F ++ ++ IS+ D
Sbjct: 115 SMIGQFGVGFYSLFLVADRVQVISKSND 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,800,465
Number of Sequences: 62578
Number of extensions: 133690
Number of successful extensions: 384
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 23
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)