Query 031890
Match_columns 151
No_of_seqs 109 out of 630
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 100.0 1.2E-30 4.2E-35 189.9 18.7 128 9-139 3-130 (133)
2 2zdi_C Prefoldin subunit alpha 100.0 4.8E-30 1.7E-34 190.7 14.7 136 4-143 6-144 (151)
3 2zqm_A Prefoldin beta subunit 99.1 2.5E-08 8.5E-13 69.9 17.0 98 18-140 16-113 (117)
4 1fxk_A Prefoldin; archaeal pro 98.9 2.2E-07 7.4E-12 64.1 15.1 95 18-137 11-105 (107)
5 1fxk_C Protein (prefoldin); ar 97.8 0.00017 5.9E-09 51.3 9.6 116 4-133 5-131 (133)
6 2zdi_C Prefoldin subunit alpha 97.4 0.00017 5.8E-09 52.6 5.2 116 6-135 15-143 (151)
7 3gpv_A Transcriptional regulat 85.1 3.3 0.00011 29.4 6.9 52 93-144 74-135 (148)
8 3trt_A Vimentin; cytoskeleton, 84.9 3.1 0.00011 26.2 6.0 48 90-137 21-68 (77)
9 3rrk_A V-type ATPase 116 kDa s 82.2 17 0.00059 28.9 17.1 33 94-126 223-255 (357)
10 2zqm_A Prefoldin beta subunit 77.2 7 0.00024 26.1 6.0 105 2-131 5-111 (117)
11 3efg_A Protein SLYX homolog; x 77.1 11 0.00039 24.0 6.6 45 94-138 11-55 (78)
12 1q08_A Zn(II)-responsive regul 75.1 14 0.00047 23.8 6.9 33 106-138 41-73 (99)
13 1fxk_A Prefoldin; archaeal pro 74.7 7.4 0.00025 25.6 5.5 102 3-129 1-104 (107)
14 3gp4_A Transcriptional regulat 72.9 17 0.00058 25.5 7.3 38 94-131 78-115 (142)
15 3gp4_A Transcriptional regulat 71.1 14 0.00049 25.8 6.6 48 93-140 60-117 (142)
16 1gk4_A Vimentin; intermediate 70.8 16 0.00055 23.4 6.2 50 90-139 12-61 (84)
17 1x8y_A Lamin A/C; structural p 68.7 19 0.00064 23.3 6.2 50 90-139 14-63 (86)
18 3gpv_A Transcriptional regulat 67.6 11 0.00038 26.5 5.4 44 93-136 91-134 (148)
19 1nkp_B MAX protein, MYC proto- 67.2 16 0.00053 23.2 5.6 41 94-138 41-81 (83)
20 2z5i_A TM, general control pro 66.1 18 0.0006 21.3 6.4 39 99-137 7-45 (52)
21 3efg_A Protein SLYX homolog; x 64.9 19 0.00064 23.0 5.5 45 95-139 19-63 (78)
22 3n27_A Fusion glycoprotein F0, 64.5 21 0.0007 23.1 5.6 44 104-148 6-49 (80)
23 3mov_A Lamin-B1; LMNB1, B-type 60.2 32 0.0011 22.7 6.2 50 88-137 21-70 (95)
24 1q08_A Zn(II)-responsive regul 59.7 28 0.00095 22.2 5.9 36 94-129 36-71 (99)
25 3tnu_B Keratin, type II cytosk 58.7 31 0.001 23.7 6.2 52 88-139 59-110 (129)
26 1r8d_A Transcription activator 58.2 33 0.0011 22.5 6.2 41 93-133 60-104 (109)
27 3tnu_A Keratin, type I cytoske 58.2 31 0.0011 23.8 6.2 51 89-139 62-112 (131)
28 2yo3_A General control protein 57.0 35 0.0012 26.9 6.8 43 94-136 206-248 (268)
29 1r8e_A Multidrug-efflux transp 56.8 37 0.0013 25.6 7.0 43 93-135 64-110 (278)
30 1q06_A Transcriptional regulat 55.5 47 0.0016 22.8 7.1 42 93-134 58-109 (135)
31 3hh0_A Transcriptional regulat 54.1 53 0.0018 22.9 7.5 46 94-139 63-115 (146)
32 3swy_A Cyclic nucleotide-gated 53.8 30 0.001 19.9 6.0 33 102-134 3-35 (46)
33 3tnu_B Keratin, type II cytosk 52.7 6.7 0.00023 27.2 1.9 24 109-132 41-64 (129)
34 3ra3_A P1C; coiled coil domain 52.5 21 0.00072 17.9 3.5 21 14-34 6-26 (28)
35 1hjb_A Ccaat/enhancer binding 52.5 29 0.001 22.6 4.9 26 6-32 42-67 (87)
36 2vz4_A Tipal, HTH-type transcr 52.1 27 0.00092 22.9 4.9 39 93-131 59-101 (108)
37 1avy_A Fibritin, gpwac M; bact 51.6 43 0.0015 21.1 6.1 43 105-147 9-51 (74)
38 1m1j_C Fibrinogen gamma chain; 51.2 1.1E+02 0.0036 25.5 13.7 112 6-143 26-137 (409)
39 2yy0_A C-MYC-binding protein; 50.5 29 0.001 20.4 4.3 24 18-41 22-45 (53)
40 2w6a_A ARF GTPase-activating p 49.9 41 0.0014 20.5 6.3 36 4-40 24-59 (63)
41 3swf_A CGMP-gated cation chann 49.8 47 0.0016 21.1 6.0 27 102-128 5-31 (74)
42 1t6f_A Geminin; coiled-coil, c 48.9 27 0.00094 19.0 3.6 26 17-42 9-34 (37)
43 1nkp_A C-MYC, MYC proto-oncoge 48.2 52 0.0018 21.1 6.6 42 94-139 46-87 (88)
44 3qao_A LMO0526 protein, MERR-l 48.1 56 0.0019 24.9 6.8 47 93-139 61-111 (249)
45 3tnu_A Keratin, type I cytoske 47.5 6.2 0.00021 27.5 1.0 16 93-108 6-21 (131)
46 1a93_B MAX protein, coiled coi 47.4 32 0.0011 18.5 4.5 27 111-137 7-33 (34)
47 1l8d_A DNA double-strand break 47.2 57 0.002 21.3 6.9 42 98-139 4-45 (112)
48 3m9b_A Proteasome-associated A 47.1 52 0.0018 25.6 6.4 45 39-94 82-127 (251)
49 3u06_A Protein claret segregat 45.5 57 0.0019 27.0 6.8 46 94-139 7-52 (412)
50 3aei_A Prefoldin beta subunit 45.0 60 0.0021 20.9 11.7 34 86-119 50-83 (99)
51 2j5u_A MREC protein; bacterial 44.9 30 0.001 26.7 4.7 33 17-49 28-60 (255)
52 2pnv_A Small conductance calci 44.6 42 0.0014 19.0 4.7 22 104-125 16-37 (43)
53 1q06_A Transcriptional regulat 44.3 61 0.0021 22.2 5.9 37 94-130 76-112 (135)
54 3rmi_A Chorismate mutase prote 43.4 61 0.0021 21.8 5.6 39 3-42 8-46 (114)
55 1jnm_A Proto-oncogene C-JUN; B 42.8 52 0.0018 19.6 5.0 35 105-139 23-57 (62)
56 3nmd_A CGMP dependent protein 42.3 62 0.0021 20.4 7.1 45 95-139 21-68 (72)
57 1l8d_A DNA double-strand break 42.0 70 0.0024 20.9 12.3 45 96-140 63-107 (112)
58 3vkg_A Dynein heavy chain, cyt 41.3 3.5E+02 0.012 28.7 13.7 38 93-130 2010-2047(3245)
59 1deq_A Fibrinogen (alpha chain 41.2 41 0.0014 27.8 5.2 55 85-139 48-102 (390)
60 3l4q_C Phosphatidylinositol 3- 40.5 1.1E+02 0.0036 22.4 6.9 43 95-137 94-136 (170)
61 2wg5_A General control protein 40.1 81 0.0028 21.0 6.2 10 44-53 26-35 (109)
62 2yny_A General control protein 40.0 85 0.0029 21.2 6.4 39 93-131 65-103 (106)
63 1r8e_A Multidrug-efflux transp 38.5 93 0.0032 23.3 6.7 39 95-133 77-115 (278)
64 3q0x_A Centriole protein; cent 38.4 94 0.0032 23.8 6.5 44 94-137 161-211 (228)
65 1lrz_A FEMA, factor essential 37.5 1.6E+02 0.0053 23.9 8.3 49 89-137 239-300 (426)
66 4etp_A Kinesin-like protein KA 36.7 1.1E+02 0.0036 25.2 7.1 45 95-139 8-52 (403)
67 2l5g_B Putative uncharacterize 35.3 61 0.0021 18.2 5.9 30 104-133 9-38 (42)
68 3u1c_A Tropomyosin alpha-1 cha 35.2 90 0.0031 20.5 5.4 39 96-134 43-81 (101)
69 3lt7_A Adhesin YADA; adhesion, 34.6 81 0.0028 19.4 4.6 29 93-121 23-51 (64)
70 2zxx_A Geminin; coiled-coil, c 34.4 78 0.0027 20.2 4.7 32 17-48 36-67 (79)
71 3fx7_A Putative uncharacterize 33.8 68 0.0023 21.2 4.4 34 1-35 6-40 (94)
72 3hh0_A Transcriptional regulat 33.7 1.1E+02 0.0039 21.1 6.0 37 94-130 77-113 (146)
73 1wlq_A Geminin; coiled-coil; 2 33.6 97 0.0033 20.0 5.3 34 17-50 40-73 (83)
74 1lwu_C Fibrinogen gamma chain; 33.4 1.7E+02 0.0059 23.4 7.7 37 4-41 9-45 (323)
75 4a3a_A Amphiphysin; structural 32.7 23 0.00079 27.0 2.3 66 62-130 2-71 (243)
76 3bbp_D GRIP and coiled-coil do 32.5 49 0.0017 20.7 3.3 50 89-138 11-63 (71)
77 2zhg_A Redox-sensitive transcr 31.9 77 0.0026 22.2 4.9 11 93-103 68-78 (154)
78 2wuj_A Septum site-determining 31.8 61 0.0021 19.1 3.7 30 11-41 24-53 (57)
79 2akf_A Coronin-1A; coiled coil 31.7 58 0.002 16.9 4.8 27 109-135 4-30 (32)
80 1wp7_A Fusion protein; fusion 30.5 1.1E+02 0.0038 19.9 4.9 43 105-147 7-49 (89)
81 3ghg_A Fibrinogen alpha chain; 30.3 1.1E+02 0.0038 26.5 6.2 47 89-135 107-155 (562)
82 1uii_A Geminin; human, DNA rep 30.2 1.1E+02 0.0038 19.7 5.7 30 18-47 49-78 (83)
83 1ci6_A Transcription factor AT 29.6 93 0.0032 18.6 6.2 34 106-139 25-58 (63)
84 2yko_A LINE-1 ORF1P; RNA-bindi 29.5 1.6E+02 0.0054 22.6 6.5 37 102-138 11-47 (233)
85 2yo3_A General control protein 28.9 2.1E+02 0.0071 22.5 7.1 46 95-140 214-259 (268)
86 3h43_A Proteasome-activating n 28.7 84 0.0029 20.0 4.2 43 40-93 3-47 (85)
87 1r8d_A Transcription activator 28.7 49 0.0017 21.6 3.2 31 97-127 75-105 (109)
88 3m9b_A Proteasome-associated A 28.6 1.2E+02 0.004 23.6 5.7 43 99-141 56-98 (251)
89 3ghg_A Fibrinogen alpha chain; 28.0 1.6E+02 0.0055 25.4 6.8 35 102-136 115-149 (562)
90 3htk_A Structural maintenance 27.7 94 0.0032 18.0 7.1 15 97-111 5-19 (60)
91 1nkp_B MAX protein, MYC proto- 27.1 1.2E+02 0.004 18.9 5.2 32 98-129 48-79 (83)
92 1lwu_C Fibrinogen gamma chain; 26.9 1.8E+02 0.0061 23.3 6.7 38 102-139 17-54 (323)
93 2dfs_A Myosin-5A; myosin-V, in 26.3 3.5E+02 0.012 25.2 9.4 97 4-137 946-1042(1080)
94 2lw1_A ABC transporter ATP-bin 26.2 1.2E+02 0.0041 19.2 4.7 16 102-117 27-42 (89)
95 2aze_B Transcription factor E2 26.1 1.4E+02 0.0048 19.9 5.1 29 106-134 8-36 (106)
96 2nrj_A HBL B protein; enteroto 26.0 2.5E+02 0.0086 22.4 14.6 29 82-111 212-240 (346)
97 1ixr_A Holliday junction DNA h 25.7 78 0.0027 23.3 4.1 28 70-97 4-34 (191)
98 4dyl_A Tyrosine-protein kinase 25.5 2.7E+02 0.0091 22.5 9.5 42 97-138 302-343 (406)
99 3l4f_A RHO guanine nucleotide 25.4 1.2E+02 0.0041 18.4 4.7 53 92-144 2-54 (61)
100 1aa0_A Fibritin, gpwac E; bact 25.4 1.6E+02 0.0054 19.9 7.0 43 105-147 51-93 (113)
101 2wt7_A Proto-oncogene protein 25.1 1.1E+02 0.0039 18.1 6.0 32 106-137 25-56 (63)
102 2efr_A General control protein 25.1 1.9E+02 0.0065 20.7 6.4 32 9-42 17-48 (155)
103 2dgc_A Protein (GCN4); basic d 24.7 1.2E+02 0.0041 18.2 4.6 26 106-131 32-57 (63)
104 3azd_A Short alpha-tropomyosin 24.6 22 0.00075 19.4 0.6 26 99-124 6-31 (37)
105 1vcs_A Vesicle transport throu 24.5 84 0.0029 20.6 3.7 14 91-104 43-56 (102)
106 3t98_B Nucleoporin NUP58/NUP45 24.4 1.5E+02 0.005 19.3 4.8 31 99-129 7-37 (93)
107 2wg5_A General control protein 24.3 84 0.0029 20.9 3.7 26 115-140 11-36 (109)
108 2qyw_A Vesicle transport throu 24.1 83 0.0029 20.7 3.6 13 92-104 55-67 (102)
109 3mq7_A Bone marrow stromal ant 24.0 1.8E+02 0.0061 20.0 7.1 25 105-129 72-96 (121)
110 1v5r_A Growth-arrest-specific 24.0 83 0.0028 20.9 3.5 19 72-90 47-65 (97)
111 2w6b_A RHO guanine nucleotide 23.9 1.2E+02 0.0041 18.0 6.8 50 88-137 1-50 (56)
112 2zhg_A Redox-sensitive transcr 23.8 1.5E+02 0.0052 20.6 5.2 34 94-127 87-120 (154)
113 3kpe_A Fusion glycoprotein F0; 23.6 1.2E+02 0.004 17.7 5.9 40 102-141 2-41 (51)
114 2lme_A Adhesin YADA; trimeric 23.5 1.6E+02 0.0055 19.3 7.8 48 22-70 16-63 (105)
115 3sjb_C Golgi to ER traffic pro 23.2 1.6E+02 0.0056 19.3 4.8 28 102-129 54-81 (93)
116 2xdj_A Uncharacterized protein 23.2 1.5E+02 0.0052 18.9 6.3 31 107-137 23-53 (83)
117 2lf0_A Uncharacterized protein 22.8 1.8E+02 0.0061 20.1 5.1 22 18-39 6-27 (123)
118 1zxa_A CGMP-dependent protein 22.8 1.4E+02 0.0048 18.4 4.9 38 95-132 16-53 (67)
119 4b4t_K 26S protease regulatory 22.8 3.2E+02 0.011 22.5 7.8 72 2-88 44-115 (428)
120 2xv5_A Lamin-A/C; structural p 22.5 1.5E+02 0.0051 18.5 5.9 29 100-128 8-36 (74)
121 3u59_A Tropomyosin beta chain; 22.5 1.7E+02 0.0057 19.0 5.4 31 100-130 47-77 (101)
122 1nlw_A MAD protein, MAX dimeri 22.3 1.5E+02 0.0052 18.5 4.6 38 94-135 41-78 (80)
123 1t3j_A Mitofusin 1; coiled coi 22.3 1.8E+02 0.006 19.2 5.3 37 10-46 39-78 (96)
124 1cuk_A RUVA protein; DNA repai 22.2 83 0.0028 23.4 3.7 26 70-95 4-32 (203)
125 1gd2_E Transcription factor PA 22.2 1.5E+02 0.005 18.3 5.6 32 102-133 34-65 (70)
126 2q6q_A Spindle POLE BODY compo 21.8 1.5E+02 0.0052 18.4 7.4 37 6-43 16-52 (74)
127 1deq_A Fibrinogen (alpha chain 21.8 2.4E+02 0.0082 23.3 6.5 41 94-134 117-157 (390)
128 1rtm_1 Mannose-binding protein 21.7 1.1E+02 0.0039 20.4 4.1 25 102-126 2-26 (149)
129 3mud_A DNA repair protein XRCC 21.7 2.4E+02 0.0082 20.6 7.2 65 67-134 96-165 (175)
130 2z1c_A Hydrogenase expression/ 21.5 1.3E+02 0.0044 18.8 3.9 28 75-103 36-63 (75)
131 3d3r_A Hydrogenase assembly ch 21.4 76 0.0026 21.3 3.0 28 75-103 60-87 (103)
132 1t2k_D Cyclic-AMP-dependent tr 21.4 1.3E+02 0.0046 17.6 6.5 32 106-137 24-55 (61)
133 1ik9_A DNA repair protein XRCC 21.4 1.9E+02 0.0066 21.6 5.6 32 18-49 142-173 (213)
134 1dip_A Delta-sleep-inducing pe 21.3 1E+02 0.0036 19.5 3.4 31 95-125 13-43 (78)
135 1pd7_B MAD1; PAH2, SIN3, eukar 20.8 89 0.0031 15.7 2.4 14 95-108 8-21 (26)
136 2p2u_A HOST-nuclease inhibitor 20.8 2.4E+02 0.0081 20.2 6.8 41 5-45 28-75 (171)
137 3hhm_B NISH2 P85alpha; PI3KCA, 20.6 3.1E+02 0.01 22.2 7.1 43 94-136 202-244 (373)
138 3pbf_A Pulmonary surfactant-as 20.5 85 0.0029 20.9 3.2 23 16-38 3-25 (148)
139 3a7p_A Autophagy protein 16; c 20.4 2.4E+02 0.0083 20.1 7.1 40 95-134 66-105 (152)
140 3q0x_A Centriole protein; cent 20.3 2.9E+02 0.0099 21.0 8.1 35 99-133 180-214 (228)
141 1bb1_B Designed, thermostable 20.3 1.1E+02 0.0037 16.1 5.2 32 105-136 3-34 (36)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.97 E-value=1.2e-30 Score=189.86 Aligned_cols=128 Identities=14% Similarity=0.280 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecce
Q 031890 9 VQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLG 88 (151)
Q Consensus 9 i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g 88 (151)
++++.... +.|+.+++.+.++++.+...+++|..++++|+.|++ ..+.+++||||+|+|++|+|+|+++|+||||+|
T Consensus 3 ~~~l~~~~-q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g 79 (133)
T 1fxk_C 3 LAEIVAQL-NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAG 79 (133)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECCSTTEEEEEEETT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCC
Confidence 55666655 899999999999999999999999999999999987 257899999999999999999999999999999
Q ss_pred eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 89 FHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 89 ~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
||||+|.++|++|+++|++.++..++++.+.+.+++++++.+...|+++++
T Consensus 80 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 80 VAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998863
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.8e-30 Score=190.68 Aligned_cols=136 Identities=17% Similarity=0.275 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCe
Q 031890 4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKV---FEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQH 80 (151)
Q Consensus 4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l---~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~ 80 (151)
+.++++.++..+. +.|+.+++.+.++++.+ ...+++|..+.+.|+.+++ .+.+++||||+++|++|+|+|+++
T Consensus 6 ~~~~~l~ql~~~~-qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~---~~~~ilvplg~~~yv~g~i~~~~~ 81 (151)
T 2zdi_C 6 QNNKELEKLAYEY-QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE---EKPEILVPIGAGSFLKGVIVDKNN 81 (151)
T ss_dssp SSTTHHHHHHHHH-HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---SSCEEEEECSSSCEEEEECSCTTE
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCceEEEEcCCCeEEEEEECCCCE
Confidence 4566788999988 99999999999999999 7777777777777766653 478999999999999999999999
Q ss_pred eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031890 81 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 143 (151)
Q Consensus 81 V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~ 143 (151)
|+||||+|||||+|+++|++|+++|++.++..++++.+.+.+++++++.++..|+++++..+.
T Consensus 82 V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 82 AIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred EEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886655
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.07 E-value=2.5e-08 Score=69.88 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890 18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE 97 (151)
Q Consensus 18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e 97 (151)
..|+.++..+..++..+..++.++..+.+.|+.+++ +..++.++| |+||+.+.++
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~----d~~vy~~iG---------------------~vfv~~~~~e 70 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD----DAVVYKTVG---------------------TLIVKTTKDK 70 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT----TCCEEEEET---------------------TEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CcHhHHHhh---------------------HHHhhccHHH
Confidence 567889999999999999999998777777766643 234666666 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890 98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 140 (151)
Q Consensus 98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l 140 (151)
|...|++|++.++..++.+.+.+..+...+..+...++++.+=
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988753
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=98.86 E-value=2.2e-07 Score=64.08 Aligned_cols=95 Identities=8% Similarity=0.077 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890 18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE 97 (151)
Q Consensus 18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e 97 (151)
..|+.++..+..++..+..++.++..+.+.|+.+++ +..++.++| |+||+.+.++
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~----d~~vy~~iG---------------------~vfv~~~~~e 65 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD----DAEVYKSSG---------------------NILIRVAKDE 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT----TCCEEEEET---------------------TEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CchHHHHHh---------------------HHHHhccHHH
Confidence 567889999999999999999998777777766643 234666666 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
|...+++|++.++..++.+.+.+..+...+..+...+.++
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777653
No 5
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=97.81 E-value=0.00017 Score=51.32 Aligned_cols=116 Identities=11% Similarity=0.153 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhc---------CCCCceEEEecCCeeeEe
Q 031890 4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRK--NIENLEKN---------SVTSLRTLVNLGSEVYMQ 72 (151)
Q Consensus 4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~--~i~~l~~~---------~~~~~e~lVplg~~~fv~ 72 (151)
+......+|+.-+ +.|...+..+...+..+...++.+..+.. ..+.+-+- -....+++|++|+|+|+.
T Consensus 5 ~l~~~~q~l~~~~-~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE 83 (133)
T 1fxk_C 5 EIVAQLNIYQSQV-ELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence 5566778888866 99999999999999999999998887763 22211110 023457999999999999
Q ss_pred EEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 73 ADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG 133 (151)
Q Consensus 73 a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~ 133 (151)
-.+.+.- .-+++=+++++++++.+++.+..++..+..+...++..+..
T Consensus 84 ~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 84 KNFEDAM-------------ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9988743 23677889999999999999999999999999999887653
No 6
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00017 Score=52.63 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHhhhcC---------CCCceEEEecCCeeeEe
Q 031890 6 QEKVQKFEEFVDRRLKPDLTRA---IAERDKVFEQQKIFSDLR-KNIENLEKNS---------VTSLRTLVNLGSEVYMQ 72 (151)
Q Consensus 6 ~~~i~~~e~f~~~~L~~dL~~l---~~~~~~l~~~i~e~~~lk-~~i~~l~~~~---------~~~~e~lVplg~~~fv~ 72 (151)
.....+|+.-+ +.|...+..+ ..++..+...++.+..+. +..+.+-..+ ....+++|+||+|+||.
T Consensus 15 ~~~~qql~~~~-~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE 93 (151)
T 2zdi_C 15 AYEYQVLQAQA-QILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVE 93 (151)
T ss_dssp HHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEE
Confidence 33455555544 8888899999 888888888888876665 3333332211 13457999999999999
Q ss_pred EEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 73 ADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 135 (151)
Q Consensus 73 a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~ 135 (151)
-.+.+.- .-++.=+++++++++.+++.+..++..+..+...+..+...++
T Consensus 94 ~~~~eA~-------------~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 94 RSIDEAI-------------SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp EEHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred ecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888742 3477788999999999999999999999999999888775544
No 7
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=85.08 E-value=3.3 Score=29.39 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=33.1
Q ss_pred ecHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031890 93 FTWSEALKFIS----------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAET 144 (151)
Q Consensus 93 ~t~~eA~~~l~----------~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~ 144 (151)
+|+++...+++ .+...|...++.+..++..++..+..+...+........++
T Consensus 74 ~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 74 MPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36777777776 45567777777777777777777777777777777666555
No 8
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=84.92 E-value=3.1 Score=26.20 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=37.4
Q ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 90 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 90 ~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
.+.++..||..++..+++.+......-...+...+..|..+-..|+.|
T Consensus 21 ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 21 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999988888777777777776666555544
No 9
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=82.16 E-value=17 Score=28.85 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~ 126 (151)
+..+++.-++.++..++..++.+.+.+..+...
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999998888888888776
No 10
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.19 E-value=7 Score=26.07 Aligned_cols=105 Identities=11% Similarity=0.125 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCC
Q 031890 2 DSYRQEKVQKFEEFVD--RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQ 79 (151)
Q Consensus 2 ~~~~~~~i~~~e~f~~--~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~ 79 (151)
.+..++.+.+|..+-. +.|..++..+...+..+...+.++..+..--..+...+ .++|...-. +
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG----~vfv~~~~~--------e-- 70 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVG----TLIVKTTKD--------K-- 70 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEET----TEEEEECHH--------H--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhh----HHHhhccHH--------H--
Confidence 3467777778877554 78888999999999999999999877754322343332 466654421 1
Q ss_pred eeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 80 HIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVC 131 (151)
Q Consensus 80 ~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~ 131 (151)
+...+++-+++++.+++.|++.++.+.+.+..++.++....
T Consensus 71 -----------a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 71 -----------AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999999999999999999999999987654
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.15 E-value=11 Score=24.02 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 138 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~ 138 (151)
++++-+.-|.-|+...++.++.|++.+.+-..+|..+...++.+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666665555555554443
No 12
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=75.12 E-value=14 Score=23.76 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890 106 EDKIARQIDEYTRLIASIKAQIKLVCEGICELL 138 (151)
Q Consensus 106 i~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~ 138 (151)
...|..+++.+..++.+++.....+...+....
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555554443
No 13
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.70 E-value=7.4 Score=25.57 Aligned_cols=102 Identities=13% Similarity=0.213 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCe
Q 031890 3 SYRQEKVQKFEEFVD--RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQH 80 (151)
Q Consensus 3 ~~~~~~i~~~e~f~~--~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~ 80 (151)
|..++.+.+|..+-+ ..+..++..+...+......+.++..+..--..+...+ .++|...-.-
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG----~vfv~~~~~e----------- 65 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSG----NILIRVAKDE----------- 65 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEET----TEEEEECHHH-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHh----HHHHhccHHH-----------
Confidence 456777777777544 77888999999999999999999877654322333332 4666543221
Q ss_pred eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 81 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL 129 (151)
Q Consensus 81 V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~ 129 (151)
+...+++..++++.+++.|++.++.+...+..++.++..
T Consensus 66 ----------~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 66 ----------LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234689999999999999999999999999999998864
No 14
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=72.86 E-value=17 Score=25.45 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVC 131 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~ 131 (151)
++++...++..+++.++..+..++..+..+...+....
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555544444444444443
No 15
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=71.07 E-value=14 Score=25.83 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=34.1
Q ss_pred ecHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890 93 FTWSEALKFIS----------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 140 (151)
Q Consensus 93 ~t~~eA~~~l~----------~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l 140 (151)
+|+++...+++ .+...|.+.++.+..++..++.....+...+....+.
T Consensus 60 ~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 60 LSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788877775 4566777777777777777777777777777665544
No 16
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.76 E-value=16 Score=23.42 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=38.7
Q ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 90 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 90 ~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
..|.++.++.......+..++..+..+...+..++..+.......+.|-+
T Consensus 12 sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 12 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888889999999999999888888766555555443
No 17
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=68.65 E-value=19 Score=23.25 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=40.2
Q ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 90 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 90 ~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
..|-++.++...+...++.++..+..+..++..++..+.......+.+-+
T Consensus 14 ~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 14 AKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999999999988766655555543
No 18
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=67.58 E-value=11 Score=26.55 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 136 (151)
Q Consensus 93 ~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~ 136 (151)
.++++...++..+++.++.++..++..+..+...+......+..
T Consensus 91 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 91 STILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999887776654
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.21 E-value=16 Score=23.20 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 138 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~ 138 (151)
.+..|++|| ..|......+..++..++.+...+...++.+.
T Consensus 41 iL~~Ai~YI----~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 41 ILDKATEYI----QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777774 45666777777777777777777776665543
No 20
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=66.05 E-value=18 Score=21.30 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 99 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 99 ~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
.+|-.+.+..|++.++.|..++..-+..+..+...+.+.
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 467788889999999999999888888888887777553
No 21
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.92 E-value=19 Score=22.98 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
++.-..|.++-++.|++.+-.-++.|+.++.+++.+...+..+..
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566788999999999999999999999999999999888776653
No 22
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=64.52 E-value=21 Score=23.05 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhh
Q 031890 104 QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQE 148 (151)
Q Consensus 104 ~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~~~~~ 148 (151)
+.|..|.+.+..-.+.+.+++.-...+--.++.+|.+ .++++|-
T Consensus 6 ~~I~~LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~-IN~~~~~ 49 (80)
T 3n27_A 6 DNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDY-SGGSGGI 49 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCc
Confidence 4577888999999999999999999999999999998 5566664
No 23
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=60.24 E-value=32 Score=22.66 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=38.9
Q ss_pred eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 88 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 88 g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
+-.+|.++.++..-+...+..++..+..+...+..++..+..-....+.+
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999888876654444444
No 24
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=59.71 E-value=28 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL 129 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~ 129 (151)
++++...++..++..++.+++.++.....+...+..
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777666666655543
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.69 E-value=31 Score=23.71 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=38.8
Q ss_pred eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 88 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 88 g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
.-.+|.++.++..-....+..++..+..+...+..++..+.......+.|-+
T Consensus 59 ~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 59 CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888888888888888888887766555555443
No 26
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=58.24 E-value=33 Score=22.48 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=25.5
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQ----REDKIARQIDEYTRLIASIKAQIKLVCEG 133 (151)
Q Consensus 93 ~t~~eA~~~l~~----ri~~L~~~~~~l~~~l~~i~~~i~~~~~~ 133 (151)
+|+++...+++. ..+.|+.+++.+.+++..++..+..+...
T Consensus 60 ~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (109)
T 1r8d_A 60 FRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRT 104 (109)
T ss_dssp CCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888877743 35566666666666666666655555443
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.18 E-value=31 Score=23.75 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=40.2
Q ss_pred eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 89 FHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 89 ~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
-.+|.++.++.......+..++..+..+...+..++..+.......+.|-+
T Consensus 62 ~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 62 ASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888899999999998888888776655555543
No 28
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=56.95 E-value=35 Score=26.91 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 136 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~ 136 (151)
++.+|..|.+.|...|+..++.+..++.++.+.++.+...|..
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~ 248 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYH 248 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888887777777777666555543
No 29
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=56.82 E-value=37 Score=25.57 Aligned_cols=43 Identities=9% Similarity=-0.137 Sum_probs=22.4
Q ss_pred ecHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFIS----QREDKIARQIDEYTRLIASIKAQIKLVCEGIC 135 (151)
Q Consensus 93 ~t~~eA~~~l~----~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~ 135 (151)
+|+++..++++ .....|..+++.+.+++..++.....+...+.
T Consensus 64 ~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (278)
T 1r8e_A 64 TPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKK 110 (278)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556665553 23445555555555555555555555544443
No 30
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=55.54 E-value=47 Score=22.76 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=25.2
Q ss_pred ecHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQ----------REDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 93 ~t~~eA~~~l~~----------ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
+|++++.++++. ....+...++.+..++..++.....+...+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 58 FNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788777753 345556666666666666655555554444
No 31
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=54.13 E-value=53 Score=22.92 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=26.2
Q ss_pred cHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 94 TWSEALKFIS-------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 94 t~~eA~~~l~-------~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
|+++...+++ .+...|..+.+.+..++..++..+..+...+..+..
T Consensus 63 sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 63 SLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp CHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555553 344555566666666666666666666555555443
No 32
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=53.79 E-value=30 Score=19.93 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
++.|+..|+..++.++-.++++-+++......|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777776666555
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.72 E-value=6.7 Score=27.22 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 109 IARQIDEYTRLIASIKAQIKLVCE 132 (151)
Q Consensus 109 L~~~~~~l~~~l~~i~~~i~~~~~ 132 (151)
++..+..|+.++..++.+-..++.
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333444433333333333
No 34
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=52.54 E-value=21 Score=17.89 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 031890 14 EFVDRRLKPDLTRAIAERDKV 34 (151)
Q Consensus 14 ~f~~~~L~~dL~~l~~~~~~l 34 (151)
.|-|+.|.+.+..+.+++.++
T Consensus 6 efendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHh
Confidence 356677777666666666554
No 35
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.48 E-value=29 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 031890 6 QEKVQKFEEFVDRRLKPDLTRAIAERD 32 (151)
Q Consensus 6 ~~~i~~~e~f~~~~L~~dL~~l~~~~~ 32 (151)
+.++..++. .|..|+.++..|.....
T Consensus 42 ~~r~~~Le~-EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 42 QHKVLELTA-ENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 334444444 44444444444444333
No 36
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=52.09 E-value=27 Score=22.94 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=20.9
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQ----REDKIARQIDEYTRLIASIKAQIKLVC 131 (151)
Q Consensus 93 ~t~~eA~~~l~~----ri~~L~~~~~~l~~~l~~i~~~i~~~~ 131 (151)
+|++++..+++. ....|..+++.+.+++..++..+..+.
T Consensus 59 ~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 101 (108)
T 2vz4_A 59 FPLDEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVE 101 (108)
T ss_dssp CCHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777743 234455555555555555555444444
No 37
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=51.60 E-value=43 Score=21.09 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchh
Q 031890 105 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQ 147 (151)
Q Consensus 105 ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~~~~ 147 (151)
.++.++..+..+..+++.++.++..++..++.|+.-..-|+-|
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP 51 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCCCC
Confidence 4566777777777778888888888888888887544444444
No 38
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.17 E-value=1.1e+02 Score=25.50 Aligned_cols=112 Identities=12% Similarity=0.000 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEe
Q 031890 6 QEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDI 85 (151)
Q Consensus 6 ~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~v 85 (151)
++-+.+||. .+..+|+.|+..++++....++...++..|...-... .-+.++.+ +.
T Consensus 26 ~d~L~k~e~----~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~------------------Q~~~~d~~--e~ 81 (409)
T 1m1j_C 26 ADFFNKYRL----TTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE------------------KQTLPQSI--EQ 81 (409)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS------------------TTCCSSCH--HH
T ss_pred HHHHHHHHh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------cCCCCCch--hh
Confidence 344444443 3567788888888888888887777777776652211 11111110 00
Q ss_pred cceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031890 86 GLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 143 (151)
Q Consensus 86 G~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~ 143 (151)
-+.+ . .+..+-+.-++..+...+..+..|+..+...+..|..+...+.++.+....
T Consensus 82 ~tq~-s-kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 82 LTQK-S-KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHH-H-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHH-H-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 0111 1 012223333345555555677777777777777777777777777765444
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.50 E-value=29 Score=20.41 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 031890 18 RRLKPDLTRAIAERDKVFEQQKIF 41 (151)
Q Consensus 18 ~~L~~dL~~l~~~~~~l~~~i~e~ 41 (151)
+.|+.++..|..+++.|..++.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655554
No 40
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=49.94 E-value=41 Score=20.45 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 031890 4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKI 40 (151)
Q Consensus 4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e 40 (151)
+.+.+|+++=. +|..|..+|..++..+..++.+-..
T Consensus 24 aSeAkiQQLmk-VN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 24 TSEAKVQQLMK-VNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-HhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 34556777777 6788888888888887777765443
No 41
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=49.84 E-value=47 Score=21.06 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIK 128 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~ 128 (151)
+..|+..|+..++.|+-.++++-+++.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYE 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 42
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=48.86 E-value=27 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=19.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031890 17 DRRLKPDLTRAIAERDKVFEQQKIFS 42 (151)
Q Consensus 17 ~~~L~~dL~~l~~~~~~l~~~i~e~~ 42 (151)
|+.|+.++..-..++..+..+-.++.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57888888888888888777666554
No 43
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=48.23 E-value=52 Score=21.14 Aligned_cols=42 Identities=7% Similarity=0.025 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
.+..|++|| ..|......+......++.+-..+...|++|.+
T Consensus 46 iL~~A~~YI----~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 46 ILKKATAYI----LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367777775 456666666666677777777777777777654
No 44
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=48.10 E-value=56 Score=24.92 Aligned_cols=47 Identities=9% Similarity=0.024 Sum_probs=33.9
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 93 FTWSEALKFISQ----REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 93 ~t~~eA~~~l~~----ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
+|+++...+++. +...|..+++.+...+..+...+..+...|..+.+
T Consensus 61 ~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 61 FPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp CCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 377777777763 55677777777777777777777777777766554
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.48 E-value=6.2 Score=27.49 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=0.0
Q ss_pred ecHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQREDK 108 (151)
Q Consensus 93 ~t~~eA~~~l~~ri~~ 108 (151)
++..||..++..|+..
T Consensus 6 knr~eaE~~y~~K~ee 21 (131)
T 3tnu_A 6 KNRKDAEEWFFTKTEE 21 (131)
T ss_dssp ----------------
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3344444444444333
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=47.44 E-value=32 Score=18.53 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 111 RQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 111 ~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
......+++|++++.+-..+++.++.|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344455666666666666666666543
No 47
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.18 E-value=57 Score=21.33 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
+...+.++++.+...+..+......++.++..+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677788888888889988888898888888888877744
No 48
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=47.12 E-value=52 Score=25.64 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEE-ecceeEEeec
Q 031890 39 KIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVD-IGLGFHVEFT 94 (151)
Q Consensus 39 ~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~-vG~g~~vE~t 94 (151)
.++..+++-++.|... |+.-|.|+.. .+.++++|. =|-.|+|..+
T Consensus 82 ~El~~LkeElerL~sP---------PL~iGtvlev--~dd~~aiV~s~Gr~~~V~Vs 127 (251)
T 3m9b_A 82 QQLLALREEVDRLGQP---------PSGYGVLLAT--HDDDTVDVFTSGRKMRLTCS 127 (251)
T ss_dssp HHHHHHHHHHHHHHSC---------CEEEEEEEEE--CSSSCEEEECSSSCCEECBC
T ss_pred HHHHHHHHHHHHhcCC---------CceEEEEEEE--cCCCEEEEEeCCceEEEEeC
Confidence 3455566666666653 5555555552 233454443 3334554443
No 49
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.52 E-value=57 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
++++...-+.++++.+...++.+..++..+++++..-+..-++++|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n 52 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 52 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888765555555554
No 50
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=44.99 E-value=60 Score=20.92 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=25.1
Q ss_pred cceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 86 GLGFHVEFTWSEALKFISQREDKIARQIDEYTRL 119 (151)
Q Consensus 86 G~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~ 119 (151)
-++..||.|-++|++.+.+---.....++++.+.
T Consensus 50 f~dllveitkdeaiehier~rl~ykreie~l~~~ 83 (99)
T 3aei_A 50 FSDLLVEITKDEAIEHIERSRLVYKREIEKLKKR 83 (99)
T ss_dssp ETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999987665555555555544
No 51
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=44.85 E-value=30 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=22.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 17 DRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIE 49 (151)
Q Consensus 17 ~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~ 49 (151)
|+.|+.++..+......+.....|...|++.++
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777777776666666666655543
No 52
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=44.55 E-value=42 Score=18.99 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031890 104 QREDKIARQIDEYTRLIASIKA 125 (151)
Q Consensus 104 ~ri~~L~~~~~~l~~~l~~i~~ 125 (151)
.|-+.|++++..+..++..+.+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 53
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=44.32 E-value=61 Score=22.17 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 130 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~ 130 (151)
+.++...++..+++.++.++..++.....+..-+...
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888999999999999999888888887766543
No 54
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=43.40 E-value=61 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031890 3 SYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFS 42 (151)
Q Consensus 3 ~~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~ 42 (151)
|.....+..+..=+ +.+..+|-.|..++..+..++..|+
T Consensus 8 p~~~~~L~~lR~~I-D~ID~~il~LL~~R~~~~~~I~~~K 46 (114)
T 3rmi_A 8 EKILSELAYLRQSI-DNFDITLIHILAERFRCTQAIGRLK 46 (114)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677777666 7777888888888888888888775
No 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.79 E-value=52 Score=19.58 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 105 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 105 ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
++..|+..+..|..+-..+..++..+...+..|-+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777666655544
No 56
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.33 E-value=62 Score=20.35 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 95 WSEALKFISQRE---DKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 95 ~~eA~~~l~~ri---~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
+.+=...+.+|. ...+..++.+.+.+.++...|+.+...+-..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444455554444 445667888888888888888887776665554
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.01 E-value=70 Score=20.87 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890 96 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 140 (151)
Q Consensus 96 ~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l 140 (151)
.+.+.-+..++..+...+..+...+..+...+..+...++.+..|
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 107 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLTPL 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777778888888888888888888887777777644433
No 58
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.34 E-value=3.5e+02 Score=28.68 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=21.0
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 130 (151)
Q Consensus 93 ~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~ 130 (151)
.+..++..-++.+++..+..++..+..++.+.+.+..+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATY 2047 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555555555555555444433
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.23 E-value=41 Score=27.83 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=42.5
Q ss_pred ecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 85 IGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 85 vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
.-+|+=+--+++++..-+..||+.|...++.+++.-..+-..++.+.+.+++.+.
T Consensus 48 CPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~ 102 (390)
T 1deq_A 48 CPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA 102 (390)
T ss_pred CCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4457778888999999999999999999998887777766666666666654443
No 60
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=40.48 E-value=1.1e+02 Score=22.44 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
+.+..+.+..|++.+......|...+....+.+..++..|+.+
T Consensus 94 l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsL 136 (170)
T 3l4q_C 94 ILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSL 136 (170)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788899999999999999999999999999988888777654
No 61
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.05 E-value=81 Score=21.00 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=4.8
Q ss_pred HHHHHHHhhh
Q 031890 44 LRKNIENLEK 53 (151)
Q Consensus 44 lk~~i~~l~~ 53 (151)
+++-|+.|..
T Consensus 26 lkeel~~L~~ 35 (109)
T 2wg5_A 26 LENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 4445555543
No 62
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=40.01 E-value=85 Score=21.22 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=33.4
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVC 131 (151)
Q Consensus 93 ~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~ 131 (151)
-+.-+|..-++.++..++..+..+..++..++.+|..+.
T Consensus 65 nnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 65 NNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999988888888877654
No 63
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=38.52 E-value=93 Score=23.26 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG 133 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~ 133 (151)
.++...++..+++.++++++.++..+..+...+..+...
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999888887766543
No 64
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=38.44 E-value=94 Score=23.77 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLI-------ASIKAQIKLVCEGICEL 137 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l-------~~i~~~i~~~~~~i~~l 137 (151)
+-+..+.++..|+..+.+.+..++..+ +..++|+..+-..+.++
T Consensus 161 sde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555555544 44455555555554444
No 65
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=37.49 E-value=1.6e+02 Score=23.88 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=35.6
Q ss_pred eEEeecHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q 031890 89 FHVEFTWSEALKFISQREDKIARQIDEYT-------------RLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 89 ~~vE~t~~eA~~~l~~ri~~L~~~~~~l~-------------~~l~~i~~~i~~~~~~i~~l 137 (151)
+.++.++++..+-++.+++.|++.++++. .++..+.+|+...+..+..+
T Consensus 239 ~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 239 PLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999998885 34455555665555555444
No 66
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.73 E-value=1.1e+02 Score=25.19 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
+++-++.+.++...++..+++++..+.++++++..-+..-++++|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n 52 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHN 52 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777766655544444443
No 67
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.30 E-value=61 Score=18.24 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 104 QREDKIARQIDEYTRLIASIKAQIKLVCEG 133 (151)
Q Consensus 104 ~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~ 133 (151)
.+++.+...+++..++|+.++...+.++..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555543
No 68
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.23 E-value=90 Score=20.48 Aligned_cols=39 Identities=5% Similarity=0.047 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 96 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 96 ~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
++=+.-|.+|+..++..+++++..+...+..+.......
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455777777777777777777777766655444333
No 69
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=34.58 E-value=81 Score=19.38 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=20.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 93 FTWSEALKFISQREDKIARQIDEYTRLIA 121 (151)
Q Consensus 93 ~t~~eA~~~l~~ri~~L~~~~~~l~~~l~ 121 (151)
..+.+|..|-+.|...|+..+++..+.+.
T Consensus 23 ~~l~~AN~YTD~KF~qL~nKi~k~~kr~~ 51 (64)
T 3lt7_A 23 KAIRESNQYTDHKFHQLENRLDKLEKRLL 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888877777766643
No 70
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.45 E-value=78 Score=20.24 Aligned_cols=32 Identities=9% Similarity=0.322 Sum_probs=22.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 17 DRRLKPDLTRAIAERDKVFEQQKIFSDLRKNI 48 (151)
Q Consensus 17 ~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i 48 (151)
|..|+.++......+..+..+...+.++.+..
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888877777766555544433
No 71
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.77 E-value=68 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.8
Q ss_pred Cch-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 031890 1 MDS-YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVF 35 (151)
Q Consensus 1 ~~~-~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~ 35 (151)
|+| ++..=...++.|. +.|+.....|..+.+.|.
T Consensus 6 ~dpeElr~Fa~~L~~F~-d~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFK-ELLREEVNSLSNHFHNLE 40 (94)
T ss_dssp CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc
Confidence 344 5555578888887 888888888888777774
No 72
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.67 E-value=1.1e+02 Score=21.10 Aligned_cols=37 Identities=5% Similarity=0.126 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 130 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~ 130 (151)
+.+++...+..+.+.|...++.++..+..+..-+..+
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888999999998888888888887776643
No 73
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.65 E-value=97 Score=20.01 Aligned_cols=34 Identities=9% Similarity=0.306 Sum_probs=24.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 17 DRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIEN 50 (151)
Q Consensus 17 ~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~ 50 (151)
|+.|+.++..+...+..+..+..++..+-+...-
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~ 73 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888777776666554443
No 74
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.37 E-value=1.7e+02 Score=23.37 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 031890 4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIF 41 (151)
Q Consensus 4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~ 41 (151)
.+.+++.+||.-+ ......+..|+..++.+...|.++
T Consensus 9 ~~~~~~~~~e~~i-~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 9 KILEEVRILEQIG-VSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777787755 334445555555555555554443
No 75
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=32.72 E-value=23 Score=27.05 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=39.7
Q ss_pred EEecCCeeeEeEEeCC----CCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 62 LVNLGSEVYMQADVPD----TQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 130 (151)
Q Consensus 62 lVplg~~~fv~a~i~~----~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~ 130 (151)
+..+|+|.|...--+. +.+|...+|. ++.|.|+.-+...+|...++....+|.+.+..-.+.++.+
T Consensus 2 ~~~~~~~~~~~~i~K~~~Ra~~~l~qk~G~---~~~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~ 71 (243)
T 4a3a_A 2 MADIKTGIFAKNVQKRLNRAQEKVLQKLGK---ADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGM 71 (243)
T ss_dssp ------------------CGGGCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHcCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777654433 4455666665 5899999999999999999999999998887777766544
No 76
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.55 E-value=49 Score=20.71 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=31.3
Q ss_pred eEEeecHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890 89 FHVEFTWS---EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 138 (151)
Q Consensus 89 ~~vE~t~~---eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~ 138 (151)
|+.|.|.+ ++..-+.++...+...+..-....+.+-.+++++...|+++-
T Consensus 11 w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 11 WHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ------------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 34445444 455667788888999999888999999999999999998874
No 77
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=31.94 E-value=77 Score=22.24 Aligned_cols=11 Identities=0% Similarity=-0.103 Sum_probs=6.3
Q ss_pred ecHHHHHHHHH
Q 031890 93 FTWSEALKFIS 103 (151)
Q Consensus 93 ~t~~eA~~~l~ 103 (151)
+|+++..++++
T Consensus 68 ~sl~eI~~~l~ 78 (154)
T 2zhg_A 68 IPLATIGEAFG 78 (154)
T ss_dssp CCHHHHHHHHC
T ss_pred CCHHHHHHHHH
Confidence 35566666654
No 78
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.76 E-value=61 Score=19.07 Aligned_cols=30 Identities=10% Similarity=0.301 Sum_probs=18.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 031890 11 KFEEFVDRRLKPDLTRAIAERDKVFEQQKIF 41 (151)
Q Consensus 11 ~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~ 41 (151)
.-..|+ +.+-.+++.+......|..++..+
T Consensus 24 EVD~FL-d~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 24 EVNEFL-AQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677 566667777777666666666543
No 79
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.73 E-value=58 Score=16.91 Aligned_cols=27 Identities=4% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 109 IARQIDEYTRLIASIKAQIKLVCEGIC 135 (151)
Q Consensus 109 L~~~~~~l~~~l~~i~~~i~~~~~~i~ 135 (151)
|++.+.+++....+++.++..+++..+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666665554
No 80
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=30.50 E-value=1.1e+02 Score=19.95 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchh
Q 031890 105 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQ 147 (151)
Q Consensus 105 ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~~~~ 147 (151)
.|..|.+.+..-.+.+.+++.-+..+--+++.+|....++-.|
T Consensus 7 nIlrLKeSI~~TNeAV~EVt~glsqlaVAIqaIQD~IN~~l~~ 49 (89)
T 1wp7_A 7 NINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYGGSGGSG 49 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 4667888888999999999999999999999999887766444
No 81
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.28 E-value=1.1e+02 Score=26.47 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=36.1
Q ss_pred eEEeec--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 89 FHVEFT--WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 135 (151)
Q Consensus 89 ~~vE~t--~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~ 135 (151)
.|-|++ ++.-+.+|+.+++.--.++..|+..|..+...|+.++.-|.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 77788888888887778888888888888888888877664
No 82
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.17 E-value=1.1e+02 Score=19.69 Aligned_cols=30 Identities=10% Similarity=0.281 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKN 47 (151)
Q Consensus 18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~ 47 (151)
..|+.++..+...+..+.....+...+-+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665554443
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.65 E-value=93 Score=18.60 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 106 EDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 106 i~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
...|....+.|...-..++.++..+...+..|-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554433
No 84
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.51 E-value=1.6e+02 Score=22.64 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 138 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~ 138 (151)
++.|++.|++.++.+.+.......+++..+..++.+.
T Consensus 11 ~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 11 LEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555555556666666665553
No 85
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=28.86 E-value=2.1e+02 Score=22.45 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 140 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l 140 (151)
.+....-++.++..++..+.++.+.+.++-..|.-++..++++..|
T Consensus 214 Td~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 214 TDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666777777777777777777777777777777777766554
No 86
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=28.74 E-value=84 Score=20.02 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEE--ecceeEEee
Q 031890 40 IFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVD--IGLGFHVEF 93 (151)
Q Consensus 40 e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~--vG~g~~vE~ 93 (151)
++..+++-++.|+.. |+.-|-++. +.|.++++|. -|..|||-.
T Consensus 3 ev~~lkeei~~L~~~---------P~~vG~v~e--~~dd~~~iVkss~g~~~~V~v 47 (85)
T 3h43_A 3 ENEILRRELDRMRVP---------PLIVGTVVD--KVGERKVVVKSSTGPSFLVNV 47 (85)
T ss_dssp HHHHHHHHHHHHHSC---------CEEEEEEEE--EEETTEEEEEETTSSEEEEEB
T ss_pred HHHHHHHHHHHhcCC---------CceEEEEEE--EcCCCEEEEEeCCCCeEEEEe
Confidence 556667777777654 333344433 2234566664 344566554
No 87
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=28.72 E-value=49 Score=21.61 Aligned_cols=31 Identities=6% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 97 EALKFISQREDKIARQIDEYTRLIASIKAQI 127 (151)
Q Consensus 97 eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i 127 (151)
+....+..+++.++.+++.++..+..+...+
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 75 DRKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776666665543
No 88
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.63 E-value=1.2e+02 Score=23.63 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031890 99 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP 141 (151)
Q Consensus 99 ~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~ 141 (151)
.+-+.+++..|..+..+|...+...+.++..+...+.+++.-|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456777777777777788888888888888888888887653
No 89
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.02 E-value=1.6e+02 Score=25.45 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 136 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~ 136 (151)
|++++..|+..++..-..|+-++..|......|++
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433334444444444433333333
No 90
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.65 E-value=94 Score=17.97 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 031890 97 EALKFISQREDKIAR 111 (151)
Q Consensus 97 eA~~~l~~ri~~L~~ 111 (151)
++..-+.+++.....
T Consensus 5 ~~~~~~~~~~~~~~~ 19 (60)
T 3htk_A 5 NTKKTLENQVEELTE 19 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 91
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.07 E-value=1.2e+02 Score=18.89 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 98 ALKFISQREDKIARQIDEYTRLIASIKAQIKL 129 (151)
Q Consensus 98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~ 129 (151)
=+..|..+...+...++.+..+...++.++..
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777888888777777777654
No 92
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.90 E-value=1.8e+02 Score=23.29 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 139 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~ 139 (151)
++..+...+..+..|+..+...+..|+.+...|.++.+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555556555555544443
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.32 E-value=3.5e+02 Score=25.15 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEE
Q 031890 4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFV 83 (151)
Q Consensus 4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V 83 (151)
..++++.+++ +.+..+...|...++.+.....+...++..+..+......
T Consensus 946 ~L~~~~~~~~----~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~-------------------------- 995 (1080)
T 2dfs_A 946 SLLEKMNNLE----ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK-------------------------- 995 (1080)
T ss_dssp -----CHHHH----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Q ss_pred EecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 84 DIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 84 ~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
.+..+.++.+-.+...+......+.+++.+..++.....+...+.++
T Consensus 996 -------l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 996 -------LRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.20 E-value=1.2e+02 Score=19.19 Aligned_cols=16 Identities=6% Similarity=0.279 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYT 117 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~ 117 (151)
|..+|..|+..+..|.
T Consensus 27 le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 95
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.11 E-value=1.4e+02 Score=19.86 Aligned_cols=29 Identities=0% Similarity=0.147 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 106 EDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 106 i~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
+..|...+..|...-..+-.+|..+...+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 96
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=25.96 E-value=2.5e+02 Score=22.37 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=13.8
Q ss_pred EEEecceeEEeecHHHHHHHHHHHHHHHHH
Q 031890 82 FVDIGLGFHVEFTWSEALKFISQREDKIAR 111 (151)
Q Consensus 82 ~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~ 111 (151)
.+.++.|.+++....+..+ +.++++.|.+
T Consensus 212 ~~~i~Ggi~a~~a~k~~~~-~~~ei~~l~~ 240 (346)
T 2nrj_A 212 GLPIIGGIIVGVARDNLGK-LEPLLAELRQ 240 (346)
T ss_dssp EEEETTTEEEEEEGGGHHH-HHHHHHHHHS
T ss_pred hhhhhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445556666654433332 4444444433
No 97
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=25.75 E-value=78 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=19.6
Q ss_pred eEeEEeC--CCCeeEEEecc-eeEEeecHHH
Q 031890 70 YMQADVP--DTQHIFVDIGL-GFHVEFTWSE 97 (151)
Q Consensus 70 fv~a~i~--~~~~V~V~vG~-g~~vE~t~~e 97 (151)
|++|+|. .++.++|++|. ||.|-.|..-
T Consensus 4 ~l~G~l~~~~~~~~vidv~GvGY~v~~~~~t 34 (191)
T 1ixr_A 4 YLRGLVLKKEAGGFVLLAGGVGFFLQAPTPF 34 (191)
T ss_dssp EEEEEEEEECSSEEEEECSSEEEEEECCHHH
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHH
Confidence 6777766 46778888654 8888776543
No 98
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=25.46 E-value=2.7e+02 Score=22.48 Aligned_cols=42 Identities=2% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890 97 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 138 (151)
Q Consensus 97 eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~ 138 (151)
-+..+|..++..++..+..++..+...+.....+...++...
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~ 343 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEE 343 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999999998888877776553
No 99
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=25.45 E-value=1.2e+02 Score=18.43 Aligned_cols=53 Identities=6% Similarity=0.060 Sum_probs=40.7
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031890 92 EFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAET 144 (151)
Q Consensus 92 E~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~ 144 (151)
|+++.++.--+...+..|....+.+.+-+...+..=+.++..++.+-+-.+++
T Consensus 2 EkSLVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~~ 54 (61)
T 3l4f_A 2 EKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDP 54 (61)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 67888899999999999999888888888887777777776666655444443
No 100
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.44 E-value=1.6e+02 Score=19.87 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchh
Q 031890 105 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQ 147 (151)
Q Consensus 105 ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~~~~ 147 (151)
-++.++..+..+..++..++..+..++..++.++.-..-|+-|
T Consensus 51 sVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ag~i~~AP 93 (113)
T 1aa0_A 51 SIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAP 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred hhhccccchhhhheeecccccchhhhhhhhHHHHhcCCCCCCC
Confidence 3455555666666667777777777887788777544444444
No 101
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.12 E-value=1.1e+02 Score=18.11 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 106 EDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 106 i~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
+..|+...+.|..+-..++..+..+...+..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554444443
No 102
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.11 E-value=1.9e+02 Score=20.66 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031890 9 VQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFS 42 (151)
Q Consensus 9 i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~ 42 (151)
=.+|+.... +..||.+...+.+.....+.++.
T Consensus 17 d~KyeEvaR--~E~dLEraEERae~aE~k~~eLE 48 (155)
T 2efr_A 17 YHLENEVAR--LKKLLERAEERAELSEGKSAELE 48 (155)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665433 77788888777777777766543
No 103
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.74 E-value=1.2e+02 Score=18.19 Aligned_cols=26 Identities=4% Similarity=0.124 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 106 EDKIARQIDEYTRLIASIKAQIKLVC 131 (151)
Q Consensus 106 i~~L~~~~~~l~~~l~~i~~~i~~~~ 131 (151)
+..|+..+..|..+-..+..++..+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 104
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.57 E-value=22 Score=19.39 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 99 LKFISQREDKIARQIDEYTRLIASIK 124 (151)
Q Consensus 99 ~~~l~~ri~~L~~~~~~l~~~l~~i~ 124 (151)
++-+.+|+..|....+.++..+..++
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766666666666655544
No 105
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.49 E-value=84 Score=20.62 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=9.3
Q ss_pred EeecHHHHHHHHHH
Q 031890 91 VEFTWSEALKFISQ 104 (151)
Q Consensus 91 vE~t~~eA~~~l~~ 104 (151)
||..++||.++|+.
T Consensus 43 ie~~l~EA~ell~q 56 (102)
T 1vcs_A 43 VEKQLEEARELLEQ 56 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45567777777765
No 106
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.41 E-value=1.5e+02 Score=19.35 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 99 LKFISQREDKIARQIDEYTRLIASIKAQIKL 129 (151)
Q Consensus 99 ~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~ 129 (151)
.+|+.+.++..++.+..++..|..+..++..
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777777777777777777777766544
No 107
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.35 E-value=84 Score=20.91 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890 115 EYTRLIASIKAQIKLVCEGICELLQL 140 (151)
Q Consensus 115 ~l~~~l~~i~~~i~~~~~~i~~l~~l 140 (151)
.++.++..++.++....+.+.++++.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444444455555555555554
No 108
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.09 E-value=83 Score=20.66 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=6.2
Q ss_pred eecHHHHHHHHHH
Q 031890 92 EFTWSEALKFISQ 104 (151)
Q Consensus 92 E~t~~eA~~~l~~ 104 (151)
|..++||.++|+.
T Consensus 55 e~~ldEA~eLl~q 67 (102)
T 2qyw_A 55 DEKQQEANETLAE 67 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555444
No 109
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.97 E-value=1.8e+02 Score=19.99 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 105 REDKIARQIDEYTRLIASIKAQIKL 129 (151)
Q Consensus 105 ri~~L~~~~~~l~~~l~~i~~~i~~ 129 (151)
+++.|+..+..|+..+....+.+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 110
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=23.95 E-value=83 Score=20.93 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=14.9
Q ss_pred eEEeCCCCeeEEEecceeE
Q 031890 72 QADVPDTQHIFVDIGLGFH 90 (151)
Q Consensus 72 ~a~i~~~~~V~V~vG~g~~ 90 (151)
...+...++|+|-||.||.
T Consensus 47 ~vRil~~~~vMVRVGGGW~ 65 (97)
T 1v5r_A 47 FIRMLHNKHVMVRVGGGWE 65 (97)
T ss_dssp EEEEETTTEEEEEETTEEE
T ss_pred EEEEecCCEEEEEeCCcHH
Confidence 4445566799999999995
No 111
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.92 E-value=1.2e+02 Score=18.00 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=35.5
Q ss_pred eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 88 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 88 g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
|..=|+|+-++.--+...+..|.....++.+.+.+=+.-=+.++..++.+
T Consensus 1 ~~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 1 GPLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888999999999999999888888888776655555555555544
No 112
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.77 E-value=1.5e+02 Score=20.65 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQI 127 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i 127 (151)
+.++...++..+.+.++.+++.++.....+...+
T Consensus 87 ~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 87 SAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777776666655555433
No 113
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.58 E-value=1.2e+02 Score=17.74 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP 141 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~ 141 (151)
|+.++..|.+.+.+.++.+.++..-...+--+++.+|++.
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~I 41 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYI 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888887788777653
No 114
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=23.49 E-value=1.6e+02 Score=19.30 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeee
Q 031890 22 PDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVY 70 (151)
Q Consensus 22 ~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~f 70 (151)
..+.+|..+++.+..+...-.-.--++..|+... .+-+..|-+|-|.|
T Consensus 16 ~~~~~l~~~i~~~~~~~~~g~A~a~A~a~lp~~~-~~gk~~v~~g~G~y 63 (105)
T 2lme_A 16 HKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPY-GVGKVNFTAGVGGY 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSC-CSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCcEEEEEEEecc
Confidence 3445555555555555555444455666665432 34457777777766
No 115
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.21 E-value=1.6e+02 Score=19.28 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKL 129 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~ 129 (151)
++|+++.+.+.++++++.+..-+.....
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQA 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666655555443
No 116
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.20 E-value=1.5e+02 Score=18.86 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 107 DKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 107 ~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
-.|..+++.++.+++.++.++......+.++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344555555555555555555554444443
No 117
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.82 E-value=1.8e+02 Score=20.07 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 031890 18 RRLKPDLTRAIAERDKVFEQQK 39 (151)
Q Consensus 18 ~~L~~dL~~l~~~~~~l~~~i~ 39 (151)
+.++.+|++|.++++.++..++
T Consensus 6 e~~K~Eiq~L~drLD~~~rKla 27 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDAIRHQQA 27 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665555555544
No 118
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.80 E-value=1.4e+02 Score=18.37 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCE 132 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~ 132 (151)
.-+++.-=+.++..|+..++.-...+..++.++..+..
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555554444455554444444433
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.78 E-value=3.2e+02 Score=22.45 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCee
Q 031890 2 DSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHI 81 (151)
Q Consensus 2 ~~~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V 81 (151)
...++.++.+++.-+ +.|..+-+.+..+...+..++.. +++-++.++.. |+.-|-++ ++.|.+++
T Consensus 44 ~~dl~~~lk~le~~~-~~L~~e~e~l~~~~~~~~~e~~~---~~ee~~~l~~~---------~~~vg~~~--e~~d~~~~ 108 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEY-ELLTLQEDYIKDEQRHLKRELKR---AQEEVKRIQSV---------PLVIGQFL--EPIDQNTG 108 (428)
T ss_dssp ----CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTCS---------CEEEEEEE--EEEETTEE
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCC---------CceeeEEE--EEccCCee
Q ss_pred EEEecce
Q 031890 82 FVDIGLG 88 (151)
Q Consensus 82 ~V~vG~g 88 (151)
+|....|
T Consensus 109 iv~~~~~ 115 (428)
T 4b4t_K 109 IVSSTTG 115 (428)
T ss_dssp EEEETTS
T ss_pred EEecCCC
No 120
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.52 E-value=1.5e+02 Score=18.48 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 100 KFISQREDKIARQIDEYTRLIASIKAQIK 128 (151)
Q Consensus 100 ~~l~~ri~~L~~~~~~l~~~l~~i~~~i~ 128 (151)
+-+...+..++..+..++.++......++
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq 36 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQ 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544444433
No 121
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.45 E-value=1.7e+02 Score=19.02 Aligned_cols=31 Identities=3% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 100 KFISQREDKIARQIDEYTRLIASIKAQIKLV 130 (151)
Q Consensus 100 ~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~ 130 (151)
.-+.+|+..++..++.+...+...+..+...
T Consensus 47 ~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 47 QGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377777777777777777766666555443
No 122
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.30 E-value=1.5e+02 Score=18.53 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 135 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~ 135 (151)
.+..|.+||. .|......+..+...++.+...+...++
T Consensus 41 iL~kA~~yI~----~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 41 LLTKAKLHIK----KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777653 4555555555556666666655555444
No 123
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.27 E-value=1.8e+02 Score=19.24 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 10 QKFEEFVD---RRLKPDLTRAIAERDKVFEQQKIFSDLRK 46 (151)
Q Consensus 10 ~~~e~f~~---~~L~~dL~~l~~~~~~l~~~i~e~~~lk~ 46 (151)
.++.+-++ +.|..+++.+..+++.+....+....+++
T Consensus 39 arLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444443 55667777777777777777777766665
No 124
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=22.23 E-value=83 Score=23.35 Aligned_cols=26 Identities=12% Similarity=0.427 Sum_probs=15.4
Q ss_pred eEeEEeCC--CCeeEEEecc-eeEEeecH
Q 031890 70 YMQADVPD--TQHIFVDIGL-GFHVEFTW 95 (151)
Q Consensus 70 fv~a~i~~--~~~V~V~vG~-g~~vE~t~ 95 (151)
|++|+|.. ++.|+|++|. ||-|-.|.
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~ 32 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPM 32 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCH
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCH
Confidence 55666552 5667777544 66666543
No 125
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.18 E-value=1.5e+02 Score=18.33 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQIKLVCEG 133 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~ 133 (151)
|..++..|+.....+..+...++.++..+...
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 126
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.83 E-value=1.5e+02 Score=18.41 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 6 QEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSD 43 (151)
Q Consensus 6 ~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~ 43 (151)
+++|.++.-.+ ..|+..|.+...--..+..+....+.
T Consensus 16 q~EI~rLnvlv-gslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 16 QNEIFELKKIA-ETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666655 66666666555544444444444333
No 127
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.81 E-value=2.4e+02 Score=23.30 Aligned_cols=41 Identities=7% Similarity=0.122 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
.++.=+.+|+++++.-=..+..|+..|......|+.++..|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777776655577777777777777777776666
No 128
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=21.74 E-value=1.1e+02 Score=20.39 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 102 ISQREDKIARQIDEYTRLIASIKAQ 126 (151)
Q Consensus 102 l~~ri~~L~~~~~~l~~~l~~i~~~ 126 (151)
|.+++..|+.+++.|+..+..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777777776666553
No 129
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.72 E-value=2.4e+02 Score=20.63 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=39.7
Q ss_pred CeeeEeEEeCCCCeeEEEecceeEEe-ecHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 67 SEVYMQADVPDTQHIFVDIGLGFHVE-FTWSE----ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 67 ~~~fv~a~i~~~~~V~V~vG~g~~vE-~t~~e----A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
+-+...-.+++ |-..+|+=-.-+ -++.+ -+.|-.+.+..|+..+++|++++...+.....+...+
T Consensus 96 ~~~syek~lk~---vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 96 CYFFFEKNLKD---VSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp CEEEEEEECSS---CEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555544 455565422211 12223 3347778888889999999998888888777665554
No 130
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=21.53 E-value=1.3e+02 Score=18.83 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=20.1
Q ss_pred eCCCCeeEEEecceeEEeecHHHHHHHHH
Q 031890 75 VPDTQHIFVDIGLGFHVEFTWSEALKFIS 103 (151)
Q Consensus 75 i~~~~~V~V~vG~g~~vE~t~~eA~~~l~ 103 (151)
+...+.|+|++|.-.-. .+-++|.+.++
T Consensus 36 ~~vGD~VLVH~GfAi~~-ideeeA~etl~ 63 (75)
T 2z1c_A 36 TKPGDWVIVHTGFAIEK-LDEKKAMEILE 63 (75)
T ss_dssp CCTTCEEEEETTEEEEE-ECHHHHHHHHH
T ss_pred CCCCCEEEEecchhhhh-CCHHHHHHHHH
Confidence 34578999999854443 57888887765
No 131
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=21.40 E-value=76 Score=21.28 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=19.3
Q ss_pred eCCCCeeEEEecceeEEeecHHHHHHHHH
Q 031890 75 VPDTQHIFVDIGLGFHVEFTWSEALKFIS 103 (151)
Q Consensus 75 i~~~~~V~V~vG~g~~vE~t~~eA~~~l~ 103 (151)
+...+.|+|++|.-.-. .+-++|.+.++
T Consensus 60 ~~vGDyVLVHvGfAi~k-IDeeeA~etl~ 87 (103)
T 3d3r_A 60 LAIGDYVLIHIGFVMNK-IDRNDALQSLE 87 (103)
T ss_dssp CCTTCEEEEEEEEEEEE-ECHHHHHHHHH
T ss_pred CCCCCEEEEeechhhhh-CCHHHHHHHHH
Confidence 44578899999754332 47788887765
No 132
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.39 E-value=1.3e+02 Score=17.56 Aligned_cols=32 Identities=9% Similarity=0.389 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 106 EDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137 (151)
Q Consensus 106 i~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l 137 (151)
+..|+...+.+..+-..++..+..+...+..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444
No 133
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.39 E-value=1.9e+02 Score=21.58 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIE 49 (151)
Q Consensus 18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~ 49 (151)
..|..+...+...++.+..++.+|...|+..+
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666666665555443
No 134
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.33 E-value=1e+02 Score=19.48 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKA 125 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~ 125 (151)
.-|..++|+.+|..|.+....|+.+=.-++.
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888887776544444
No 135
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.83 E-value=89 Score=15.68 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 031890 95 WSEALKFISQREDK 108 (151)
Q Consensus 95 ~~eA~~~l~~ri~~ 108 (151)
+=+|.+||++|...
T Consensus 8 LLeAAeyLErrEre 21 (26)
T 1pd7_B 8 LLEAADYLERRERE 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44788999988763
No 136
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=20.77 E-value=2.4e+02 Score=20.18 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 5 RQEKVQKFEEFVD-------RRLKPDLTRAIAERDKVFEQQKIFSDLR 45 (151)
Q Consensus 5 ~~~~i~~~e~f~~-------~~L~~dL~~l~~~~~~l~~~i~e~~~lk 45 (151)
++..+.+++..+| +...+++..+.+.++.+...+..|.+..
T Consensus 28 l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 28 IDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666665 4455666777777777777777776553
No 137
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.63 E-value=3.1e+02 Score=22.24 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 136 (151)
Q Consensus 94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~ 136 (151)
.+-+-.+.|+.|++.+.....+|...+....+.+..++..|+.
T Consensus 202 ~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (373)
T 3hhm_B 202 RIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNS 244 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677788999999999999999999999888888877777763
No 138
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.48 E-value=85 Score=20.91 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Q 031890 16 VDRRLKPDLTRAIAERDKVFEQQ 38 (151)
Q Consensus 16 ~~~~L~~dL~~l~~~~~~l~~~i 38 (151)
+.+.|+..++.++.++..+...+
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666655554444
No 139
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.36 E-value=2.4e+02 Score=20.14 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 134 (151)
Q Consensus 95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i 134 (151)
...++.-+......++..+..+...+..+...+..+...+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777777777766555555555444444
No 140
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.26 E-value=2.9e+02 Score=20.99 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 99 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG 133 (151)
Q Consensus 99 ~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~ 133 (151)
...++.++...+...+.+...++..+.+...+-+.
T Consensus 180 l~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 180 CHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666667777777777777665444
No 141
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.26 E-value=1.1e+02 Score=16.08 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890 105 REDKIARQIDEYTRLIASIKAQIKLVCEGICE 136 (151)
Q Consensus 105 ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~ 136 (151)
++..+.+....+..++..++..|..+..-|.+
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666666666666666655554
Done!