BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031892
         (151 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q59198|CISY_BARDO Citrate synthase (Fragment) OS=Bartonella doshiae GN=gltA PE=3 SV=1
          Length = 320

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 50  GSSHSGSIIGSLRKQGE--SSKGGESNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENY 107
           G +H G+    L+   E  S K     I  +KDK+  ++        F   +Y    +NY
Sbjct: 205 GPAHGGANEACLKMLKEIGSVKKIPEFIARAKDKNDPFRLMG-----FGHRVY----KNY 255

Query: 108 SPRTKATTESHHHVVKKDGDEDDP 131
            PR K   ++ H V+K+   +DDP
Sbjct: 256 DPRAKIMQKTCHEVLKELNRQDDP 279


>sp|P51112|HD_TAKRU Huntingtin OS=Takifugu rubripes GN=htt PE=3 SV=1
          Length = 3148

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 1   MENKRQESASSSSSPIN----FDHLFGPKDSSSSATTGGFGSIFSPPTA---VQGRGSSH 53
           +E+   E+ +    P+     +DH   P DSS + T G   ++     A   + G  S +
Sbjct: 489 VEDATPENPAQEGRPVGGSGAYDHSLPPSDSSQTTTEGPDSAVTPSDVAELVLDGSESQY 548

Query: 54  SGSIIGSLRKQGESSKGGES 73
           SG  IG+L+ + +      S
Sbjct: 549 SGMQIGTLQDEEDEGTATSS 568


>sp|P25588|MRC1_YEAST Mediator of replication checkpoint protein 1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=MRC1 PE=1
           SV=3
          Length = 1096

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 26  DSSSSATTGGFGSIFSPPTAVQGRGSSHSGSIIGSLRKQGESSKGGESNIFNSKDKSSIY 85
           D + +    G   I +PP  + G G   + + +  ++ + E  K  E N  N KD+    
Sbjct: 29  DENDNTNGNGPNDIDNPP-ELTGNGFLFANATLNRVKNRLEGKKAPEQNHNNGKDR---- 83

Query: 86  QSESAEPCYFSSSIYYGGQE 105
            SE++ P    S++Y GG+E
Sbjct: 84  -SENSLPTQLISNLYDGGEE 102


>sp|Q24143|HR96_DROME Nuclear hormone receptor HR96 OS=Drosophila melanogaster GN=Hr96
           PE=1 SV=1
          Length = 723

 Score = 29.6 bits (65), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 4   KRQESASSSSSPINFDHLFGPKDSSSSATTGGFGSIFSPPTAVQGRGSSHSGSIIGSLRK 63
           +R   A + SS  N DH  G +DS S       GS  S      GR +S  G+ +  L+ 
Sbjct: 114 ERDHKAPADSSSSNLDHYSGSQDSQSC------GSADSGANGCSGRQASSPGTQVNPLQM 167

Query: 64  QGE 66
             E
Sbjct: 168 TAE 170


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.303    0.122    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,446,267
Number of Sequences: 539616
Number of extensions: 2458774
Number of successful extensions: 6769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 5875
Number of HSP's gapped (non-prelim): 720
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (26.2 bits)