Query 031892
Match_columns 151
No_of_seqs 50 out of 52
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3262 H/ACA small nucleolar 28.1 26 0.00056 29.6 0.7 35 2-44 86-123 (215)
2 PF13684 Dak1_2: Dihydroxyacet 14.2 79 0.0017 27.4 0.8 10 98-107 297-306 (313)
3 PF11983 DUF3484: Domain of un 12.0 55 0.0012 23.0 -0.7 8 33-40 65-72 (73)
4 PF08765 Mor: Mor transcriptio 11.6 68 0.0015 23.3 -0.3 12 100-111 43-54 (108)
5 TIGR03599 YloV DAK2 domain fus 10.0 1.3E+02 0.0028 28.3 0.9 10 98-107 514-523 (530)
6 KOG2199 Signal transducing ada 9.7 1.1E+02 0.0024 28.7 0.2 10 140-149 246-255 (462)
7 TIGR02593 CRISPR_cas5 CRISPR-a 7.7 70 0.0015 19.6 -1.3 11 38-48 24-34 (42)
8 PRK13149 H/ACA RNA-protein com 7.0 1.6E+02 0.0034 20.4 0.1 11 17-27 40-50 (73)
9 PF15044 CLU_N: Mitochondrial 6.6 2.7E+02 0.0059 19.2 1.1 19 88-106 16-35 (76)
10 PF15560 Imm8: Immunity protei 6.3 2.3E+02 0.005 22.5 0.6 9 98-106 6-14 (133)
No 1
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=28.14 E-value=26 Score=29.57 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=25.0
Q ss_pred CCccCccccCCCCCCccccccCCCCCCC---CCCCCCcccccCCCC
Q 031892 2 ENKRQESASSSSSPINFDHLFGPKDSSS---SATTGGFGSIFSPPT 44 (151)
Q Consensus 2 e~kK~~~~Sssssss~~~~lFGpk~s~s---ssssgiF~SIFppPs 44 (151)
|||+|.+ -+||||||-+..- -.+.+|-.|+|.|=.
T Consensus 86 enk~qIG--------KVDEIfG~i~d~~fsIK~~dgv~assfk~g~ 123 (215)
T KOG3262|consen 86 ENKEQIG--------KVDEIFGPINDVHFSIKPSDGVQASSFKPGD 123 (215)
T ss_pred cchhhhc--------chhhhcccccccEEEEecCCCceeecccCCC
Confidence 6677764 5899999986543 447788888887543
No 2
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=14.24 E-value=79 Score=27.39 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=8.3
Q ss_pred ceeecccccc
Q 031892 98 SIYYGGQENY 107 (151)
Q Consensus 98 SIyYGGqd~Y 107 (151)
-+|||||.+|
T Consensus 297 e~~~GgQ~~y 306 (313)
T PF13684_consen 297 EVYDGGQPLY 306 (313)
T ss_pred EEEECCCcce
Confidence 4889999887
No 3
>PF11983 DUF3484: Domain of unknown function (DUF3484); InterPro: IPR021873 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains []. This C-terminal domain is found in FtsA from Firmicutes (Gram-positive bacteria). It is typically between 65 to 81 amino acids in length.
Probab=12.01 E-value=55 Score=22.99 Aligned_cols=8 Identities=63% Similarity=1.103 Sum_probs=6.2
Q ss_pred CCCccccc
Q 031892 33 TGGFGSIF 40 (151)
Q Consensus 33 sgiF~SIF 40 (151)
=|||++||
T Consensus 65 R~~fgsmF 72 (73)
T PF11983_consen 65 RGFFGSMF 72 (73)
T ss_pred HHHHhhhc
Confidence 37888888
No 4
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=11.56 E-value=68 Score=23.34 Aligned_cols=12 Identities=50% Similarity=1.207 Sum_probs=4.1
Q ss_pred eeccccccCCCC
Q 031892 100 YYGGQENYSPRT 111 (151)
Q Consensus 100 yYGGqd~Ys~~~ 111 (151)
||||+.+|-|..
T Consensus 43 ~~gG~~iyiP~~ 54 (108)
T PF08765_consen 43 YFGGQQIYIPKC 54 (108)
T ss_dssp HH-SS------S
T ss_pred HHCCEeEEeeCc
Confidence 799999998864
No 5
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=9.96 E-value=1.3e+02 Score=28.25 Aligned_cols=10 Identities=60% Similarity=0.982 Sum_probs=6.8
Q ss_pred ceeecccccc
Q 031892 98 SIYYGGQENY 107 (151)
Q Consensus 98 SIyYGGqd~Y 107 (151)
-+|||||..|
T Consensus 514 e~~~GgQ~~y 523 (530)
T TIGR03599 514 EIYEGGQPLY 523 (530)
T ss_pred EEEECCCCce
Confidence 3677777766
No 6
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=9.74 E-value=1.1e+02 Score=28.68 Aligned_cols=10 Identities=50% Similarity=1.258 Sum_probs=7.5
Q ss_pred CCcccCCCcc
Q 031892 140 SRGNWWQGSL 149 (151)
Q Consensus 140 SRGnWWqGSl 149 (151)
+--|||+|.+
T Consensus 246 s~~~WWKG~~ 255 (462)
T KOG2199|consen 246 SDPNWWKGEN 255 (462)
T ss_pred CCcchhcccc
Confidence 4469999974
No 7
>TIGR02593 CRISPR_cas5 CRISPR-associated protein Cas5, N-terminal domain. This model represents a shared N-terminal domain, about 43 amino acids in length, common to a number of related protein families each of which is associated with a distinct subtype of CRISPR/cas system, where CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeat and Cas is an abbreviation for CRISPR-associated. Members of this family are widely distributed enough that we designated the family Cas5. Homology appears remote, or absent, between the more C-terminal regions different subfamilies of these proteins, which typically are 210 to 265 amino acids in total length. Cas5 proteins of six different CRISPR/cas subtypes so far defined are described by respective full-length models TIGR01868, TIGR01876, TIGR01895, TIGR01874, TIGR02586, and TIGR02592. The best characterized protein in this family is DevS or Myxococcus xanthus, a Cas protein that appears to participate in a species-specific
Probab=7.70 E-value=70 Score=19.58 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=7.2
Q ss_pred cccCCCCccCC
Q 031892 38 SIFSPPTAVQG 48 (151)
Q Consensus 38 SIFppPs~v~g 48 (151)
--||||++|.|
T Consensus 24 y~~Pp~Stv~G 34 (42)
T TIGR02593 24 YPVPPPSALLG 34 (42)
T ss_pred CCCCCHHHHHH
Confidence 45777777655
No 8
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=7.05 E-value=1.6e+02 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=8.1
Q ss_pred ccccccCCCCC
Q 031892 17 NFDHLFGPKDS 27 (151)
Q Consensus 17 ~~~~lFGpk~s 27 (151)
-++++|||=+.
T Consensus 40 kV~dIfGPV~~ 50 (73)
T PRK13149 40 KVVDVFGPVKE 50 (73)
T ss_pred EEEEEECCCCC
Confidence 47889998653
No 9
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=6.61 E-value=2.7e+02 Score=19.25 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.2
Q ss_pred CCCCCCcccc-ceeeccccc
Q 031892 88 ESAEPCYFSS-SIYYGGQEN 106 (151)
Q Consensus 88 e~~epc~~sS-SIyYGGqd~ 106 (151)
+.++.|+|.. ++.+.|+..
T Consensus 16 ~~~~t~~~Tn~~L~~~g~~L 35 (76)
T PF15044_consen 16 ESPETCYLTNFSLEHNGQRL 35 (76)
T ss_pred hCccccceeEEEEEECCCcc
Confidence 4688999988 899999984
No 10
>PF15560 Imm8: Immunity protein 8
Probab=6.29 E-value=2.3e+02 Score=22.49 Aligned_cols=9 Identities=44% Similarity=0.685 Sum_probs=7.3
Q ss_pred ceeeccccc
Q 031892 98 SIYYGGQEN 106 (151)
Q Consensus 98 SIyYGGqd~ 106 (151)
+|+||||+.
T Consensus 6 n~ViGG~~~ 14 (133)
T PF15560_consen 6 NIVIGGQID 14 (133)
T ss_pred EEEEcCcch
Confidence 678999984
Done!